BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4115
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D428|GOG7B_MOUSE Golgin subfamily A member 7B OS=Mus musculus GN=GOLGA7B PE=2 SV=1
Length = 167
Score = 165 bits (418), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 71/125 (56%), Positives = 97/125 (77%)
Query: 18 NAMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKS 77
+A K+FIQRDY+DGT+ +FQT FP EL+ +IERQ++E T+ +N ++ EAE + S
Sbjct: 14 SASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNGFYAEAEKIGGSS 73
Query: 78 YCEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIE 137
Y EGC+AC TAYF++LC ETHYEK LKK++++I EQNE VF PR L+L +P ERG+RVIE
Sbjct: 74 YLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKVFAPRGLLLTDPVERGMRVIE 133
Query: 138 IAILD 142
I+I +
Sbjct: 134 ISIYE 138
>sp|Q2TAP0|GOG7B_HUMAN Golgin subfamily A member 7B OS=Homo sapiens GN=GOLGA7B PE=2 SV=2
Length = 167
Score = 165 bits (418), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 70/125 (56%), Positives = 97/125 (77%)
Query: 18 NAMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKS 77
+A K+FIQRDY+DGT+ +FQT FP EL+ +IERQ++E T+ +N ++ EAE + S
Sbjct: 14 SASLATKVFIQRDYSDGTICQFQTKFPPELDSRIERQLFEETVKTLNGFYAEAEKIGGSS 73
Query: 78 YCEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIE 137
Y EGC+AC TAYF++LC ETHYEK LKK++++I EQNE +F PR L+L +P ERG+RVIE
Sbjct: 74 YLEGCLACATAYFIFLCMETHYEKVLKKISRYIQEQNEKIFAPRGLLLTDPVERGMRVIE 133
Query: 138 IAILD 142
I+I +
Sbjct: 134 ISIYE 138
>sp|Q5ZLC9|GOGA7_CHICK Golgin subfamily A member 7 OS=Gallus gallus GN=GOLGA7 PE=2 SV=1
Length = 137
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 92/124 (74%)
Query: 19 AMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSY 78
A K+FIQRDY+ GT +FQ+ FP ELE +I+RQ +E T+ +N + EAE + +SY
Sbjct: 6 APVSGKVFIQRDYSGGTRCQFQSKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSY 65
Query: 79 CEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIEI 138
EGC+ACLTAY ++LC ETHYEK LKK+AKFI EQNE ++ P+ L+L +P ERGLRVIEI
Sbjct: 66 LEGCLACLTAYTIFLCMETHYEKVLKKIAKFIQEQNEKIYAPQGLLLTDPIERGLRVIEI 125
Query: 139 AILD 142
I +
Sbjct: 126 TIYE 129
>sp|Q7Z5G4|GOGA7_HUMAN Golgin subfamily A member 7 OS=Homo sapiens GN=GOLGA7 PE=1 SV=2
Length = 137
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 92/124 (74%)
Query: 19 AMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSY 78
A K+FIQRDY+ GT +FQT FP ELE +I+RQ +E T+ +N + EAE + +SY
Sbjct: 6 APVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSY 65
Query: 79 CEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIEI 138
EGC+ACLTAY ++LC ETHYEK LKKV+K+I EQNE ++ P+ L+L +P ERGLRVIEI
Sbjct: 66 LEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEI 125
Query: 139 AILD 142
I +
Sbjct: 126 TIYE 129
>sp|Q5EA55|GOGA7_BOVIN Golgin subfamily A member 7 OS=Bos taurus GN=GOLGA7 PE=2 SV=1
Length = 137
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 92/124 (74%)
Query: 19 AMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSY 78
A K+FIQRDY+ GT +FQT FP ELE +I+RQ +E T+ +N + EAE + +SY
Sbjct: 6 APVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSY 65
Query: 79 CEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIEI 138
EGC+ACLTAY ++LC ETHYEK LKKV+K+I EQNE ++ P+ L+L +P ERGLRVIEI
Sbjct: 66 LEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEI 125
Query: 139 AILD 142
I +
Sbjct: 126 TIYE 129
>sp|Q91W53|GOGA7_MOUSE Golgin subfamily A member 7 OS=Mus musculus GN=Golga7 PE=2 SV=1
Length = 137
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 92/124 (74%)
Query: 19 AMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSY 78
A K+FIQRDY+ GT +FQT FP ELE +I+RQ +E T+ +N + EAE + +SY
Sbjct: 6 APVSGKVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSY 65
Query: 79 CEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIEI 138
EGC+ACLTAY ++LC ETHYEK LKKV+K+I EQNE ++ P+ L+L +P ERGLRVIEI
Sbjct: 66 LEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEI 125
Query: 139 AILD 142
I +
Sbjct: 126 TIYE 129
>sp|Q6AYQ1|GOGA7_RAT Golgin subfamily A member 7 OS=Rattus norvegicus GN=Golga7 PE=2
SV=1
Length = 137
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 69/124 (55%), Positives = 92/124 (74%)
Query: 19 AMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSY 78
A K+FIQRDY+ GT +FQT FP ELE +++RQ +E T+ +N + EAE + +SY
Sbjct: 6 APVSGKVFIQRDYSSGTRCQFQTKFPAELENRVDRQQFEETVRTLNNLYAEAEKLGGQSY 65
Query: 79 CEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIEI 138
EGC+ACLTAY ++LC ETHYEK LKKV+K+I EQNE ++ P+ L+L +P ERGLRVIEI
Sbjct: 66 LEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEI 125
Query: 139 AILD 142
I +
Sbjct: 126 TIYE 129
>sp|B9JV68|ATE_AGRVS Putative arginyl-tRNA--protein transferase OS=Agrobacterium vitis
(strain S4 / ATCC BAA-846) GN=ate PE=3 SV=1
Length = 253
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 47 LEGKIERQVYEYTIN----QMNVY-----FQEAESVSCKSYCEGCMACLTAYFVYLCAET 97
L G++ER+V+ + + +MN F+ +++++ + CE C AC++ V E
Sbjct: 22 LAGEMERKVFTHLVGPRAPEMNDLLTQGGFRRSQNIAYRPACETCRACISVRIV--AREF 79
Query: 98 HYEKCLKKVAKFIAEQNENVF 118
+ +++VA A+ +VF
Sbjct: 80 QPNRTMRRVAGVNADLTSSVF 100
>sp|A8HXU1|ATE_AZOC5 Putative arginyl-tRNA--protein transferase OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=ate PE=3 SV=1
Length = 249
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 12/59 (20%)
Query: 47 LEGKIERQVYEYTINQ---------MNVYFQEAESVSCKSYCEGCMACLTAYFVYLCAE 96
L GK ER+V+ + + + F+ ++S++ + CEGC AC++ V +C +
Sbjct: 22 LPGKEERKVFTHLVGERAGALNDVLTQGGFRRSQSIAYRPACEGCRACIS---VRICVD 77
>sp|Q3AB77|RS2_CARHZ 30S ribosomal protein S2 OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=rpsB PE=3 SV=1
Length = 232
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 27/128 (21%)
Query: 19 AMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSY 78
A C ++ + + GT+ F+T + ++ER + + Q
Sbjct: 84 AERCGMFYVNQRWLGGTLTNFKT-----IRKRVERLIEIEKMEQ---------------- 122
Query: 79 CEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLPRALMLVNPAERGLRVIEI 138
EG ++ L V A+ EK +K+++F++ E LP AL +V+P + + V E
Sbjct: 123 -EGALSVLPKKEV---AKILKEK--EKLSRFLSGIKEMKKLPDALFVVDPRKEKIAVAEA 176
Query: 139 AILDQPIV 146
LD P+V
Sbjct: 177 RKLDIPVV 184
>sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta'' OS=Adiantum
capillus-veneris GN=rpoC2 PE=2 SV=2
Length = 1420
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 91 VYLCAETHYEKCLKKV-AKFIAEQN--ENVFLPRALMLVNPAERGLRVIEIAILDQPIV 146
V +C + H E ++++ ++ +A ++ NVFLP L+ ++ AER RV++ +I +PIV
Sbjct: 1241 VRIC-DKHLEIIVRQLTSRVVASEDGVTNVFLPGELVELSQAERINRVLKKSIFYEPIV 1298
>sp|B2T3H8|ATE_BURPP Putative arginyl-tRNA--protein transferase OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ate PE=3 SV=1
Length = 273
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 31 YTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSYCEGCMACL 86
Y DG + R Q P L I VY + + F+ + + + YC+GC AC+
Sbjct: 27 YLDGRIARSQVATPSHL---INSDVY---TDLVKAGFRRSGVFTYRPYCDGCRACV 76
>sp|Q13ZM2|ATE_BURXL Putative arginyl-tRNA--protein transferase OS=Burkholderia
xenovorans (strain LB400) GN=ate PE=3 SV=1
Length = 279
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 31 YTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSYCEGCMACL 86
Y DG + R Q P L I VY + + F+ + + + YC+GC AC+
Sbjct: 27 YLDGRIARSQVATPSHL---INSDVY---TDLVKAGFRRSGVFTYRPYCDGCRACV 76
>sp|A9BME3|ATE_DELAS Putative arginyl-tRNA--protein transferase OS=Delftia acidovorans
(strain DSM 14801 / SPH-1) GN=ate PE=3 SV=1
Length = 249
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 31 YTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSYCEGCMACL 86
Y DG + R Q P L I+ Y ++ + F+ + + + YC+GC AC+
Sbjct: 24 YLDGRLARSQVATPSHL---IQNSAYSELVS---LGFRRSGMFTYRPYCDGCRACV 73
>sp|C0RI93|ATE_BRUMB Putative arginyl-tRNA--protein transferase OS=Brucella melitensis
biotype 2 (strain ATCC 23457) GN=ate PE=3 SV=1
Length = 249
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 47 LEGKIERQVYEYTI----NQMNVY-----FQEAESVSCKSYCEGCMACLTAYFVYLCAET 97
LEG+ ER+VY + + N++N F+ +++++ + CE C AC++ L E
Sbjct: 22 LEGQQERKVYTHLVGDKANEINDLLTQGGFRRSQNIAYRPACEVCRACISVRI--LAGEF 79
Query: 98 HYEKCLKKV 106
+ +++V
Sbjct: 80 EMTRNMRRV 88
>sp|A6X1Z7|ATE_OCHA4 Putative arginyl-tRNA--protein transferase OS=Ochrobactrum anthropi
(strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ate PE=3
SV=1
Length = 249
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 11/69 (15%)
Query: 47 LEGKIERQVYEYTI----NQMNVY-----FQEAESVSCKSYCEGCMACLTAYFVYLCAET 97
LEG++ER+V+ + + N++N F+ +++++ + CE C AC++ L E
Sbjct: 22 LEGQMERKVFTHLVGDKANEINDLLTQGGFRRSQNIAYRPACELCRACISVRI--LAGEF 79
Query: 98 HYEKCLKKV 106
+ +++V
Sbjct: 80 KMTRNMRRV 88
>sp|Q5VXU3|CHIC1_HUMAN Cysteine-rich hydrophobic domain 1 protein OS=Homo sapiens GN=CHIC1
PE=2 SV=2
Length = 224
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 34 GTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCK 76
G +F T FP L GK+ + ++ +I ++N ++A V+ K
Sbjct: 101 GLSNKFDTEFPSVLTGKVAPEEFKTSIGRVNACLKKALPVNVK 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,029,430
Number of Sequences: 539616
Number of extensions: 1773784
Number of successful extensions: 4102
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4089
Number of HSP's gapped (non-prelim): 23
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)