Query psy4115
Match_columns 149
No_of_seqs 107 out of 164
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 17:22:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lyc_A Spindle and kinetochore 43.2 23 0.00078 25.8 3.6 32 42-73 17-48 (130)
2 2ieq_A S glycoprotein, spike g 42.8 61 0.0021 23.0 5.6 64 53-117 31-106 (109)
3 3li6_A Calcium-binding protein 38.9 35 0.0012 19.4 3.5 20 48-67 14-33 (66)
4 2knc_B Integrin beta-3; transm 37.1 35 0.0012 22.6 3.5 29 83-111 24-52 (79)
5 3seo_A VOPL C terminal domain 36.5 38 0.0013 27.0 4.1 35 47-81 13-47 (241)
6 2zhy_A ATP:COB(I)alamin adenos 33.8 1.5E+02 0.0052 22.3 8.1 64 54-117 33-103 (183)
7 3tso_C RAB11 family-interactin 32.2 28 0.00095 23.2 2.3 17 100-116 34-50 (75)
8 1qzp_A Dematin; villin headpie 31.3 21 0.00073 23.1 1.6 17 44-60 27-43 (68)
9 1yu8_X Villin; alpha helix, 3- 29.6 24 0.00083 22.9 1.6 17 44-60 26-42 (67)
10 2k6m_S Supervillin; SVHP, HP, 28.8 24 0.00081 22.9 1.5 16 45-60 27-42 (67)
11 1ete_A FLT3 ligand; four-helix 25.2 12 0.00042 27.2 -0.5 60 54-116 13-78 (134)
12 3mkr_B Coatomer subunit alpha; 24.6 2.7E+02 0.0091 23.0 7.5 75 24-111 76-151 (320)
13 2kw7_A Conserved domain protei 24.5 87 0.003 22.4 4.1 42 46-87 104-147 (157)
14 1ujs_A Actin-binding LIM prote 24.2 29 0.00099 23.7 1.3 17 45-61 42-58 (88)
15 2gzd_C RAB11 family-interactin 23.5 47 0.0016 23.5 2.3 17 100-116 66-82 (107)
16 3gn4_A Myosin-VI; unconvention 23.5 2.3E+02 0.0077 21.0 6.8 34 51-87 3-36 (148)
17 1kmi_Z CHEZ, chemotaxis protei 22.2 1.8E+02 0.0062 22.4 5.8 53 48-101 99-151 (214)
18 3zzp_A TS9, ribosomal protein 22.2 79 0.0027 20.6 3.2 31 38-70 45-75 (77)
19 3aqy_A Beta-1,3-glucan-binding 22.0 42 0.0014 23.3 1.8 26 115-141 10-35 (106)
20 1s4x_A Integrin beta-3; cell a 20.3 40 0.0014 21.9 1.3 28 81-108 10-37 (67)
21 2wp7_A PPPDE peptidase domain- 20.2 57 0.0019 24.6 2.4 40 50-89 78-122 (168)
No 1
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=43.17 E-value=23 Score=25.83 Aligned_cols=32 Identities=9% Similarity=0.341 Sum_probs=28.5
Q ss_pred CCchhhcCCCchHHHHHHHHHHHHHHHHhhcc
Q psy4115 42 HFPQELEGKIERQVYEYTINQMNVYFQEAESV 73 (149)
Q Consensus 42 ~fP~eL~g~Is~eeF~~iI~~IN~~L~~A~~~ 73 (149)
+-|.-+.||++-++...+|+.||..+..-|.+
T Consensus 17 sIPkYmrGRlTle~lN~~i~~in~~~~~KY~i 48 (130)
T 2lyc_A 17 TIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKI 48 (130)
T ss_dssp TSCHHHHSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999888763
No 2
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=42.85 E-value=61 Score=23.01 Aligned_cols=64 Identities=14% Similarity=0.064 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHhhc-c--chhhHHHHHHH--------HHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHhhc
Q psy4115 53 RQVYEYTINQMNVYFQEAES-V--SCKSYCEGCMA--------CLTAYFVYLCAET-HYEKCLKKVAKFIAEQNENV 117 (149)
Q Consensus 53 ~eeF~~iI~~IN~~L~~A~~-~--s~~n~~e~~L~--------clT~~l~~~~~~t-~~kr~l~~le~yIe~~N~~~ 117 (149)
-..|.++|+++|..|.+... . +|. ..+..+. =+|.=+=.+=... ..-..-++|+.||+..|+.+
T Consensus 31 l~kiQdVVN~q~~aLs~ll~QLn~NF~-A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~~~elq~~idn~n~tl 106 (109)
T 2ieq_A 31 LNKIQDVVNQQGSALNHLTSQLRHNFQ-SGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINSTY 106 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC-CcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 36899999999999988776 3 332 2222221 0111110000000 11235567999999999875
No 3
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=38.86 E-value=35 Score=19.44 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=16.5
Q ss_pred cCCCchHHHHHHHHHHHHHH
Q psy4115 48 EGKIERQVYEYTINQMNVYF 67 (149)
Q Consensus 48 ~g~Is~eeF~~iI~~IN~~L 67 (149)
+|+|+.+||...+..++..+
T Consensus 14 ~G~i~~~e~~~~l~~~~~~~ 33 (66)
T 3li6_A 14 DGAVSYEEVKAFVSKKRAIK 33 (66)
T ss_dssp SSSCCHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCCC
Confidence 58999999999998876444
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=37.15 E-value=35 Score=22.59 Aligned_cols=29 Identities=17% Similarity=0.037 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhhcchhhHHHHHHHHHHH
Q psy4115 83 MACLTAYFVYLCAETHYEKCLKKVAKFIA 111 (149)
Q Consensus 83 L~clT~~l~~~~~~t~~kr~l~~le~yIe 111 (149)
+|++.+.+|.++...|=+|..++.|+=-+
T Consensus 24 iGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 24 IGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888877776777777776443
No 5
>3seo_A VOPL C terminal domain protein; alpha helix, structural protein; 2.31A {Vibrio parahaemolyticus} PDB: 3ryl_A
Probab=36.51 E-value=38 Score=27.04 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=31.0
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHhhccchhhHHHH
Q psy4115 47 LEGKIERQVYEYTINQMNVYFQEAESVSCKSYCEG 81 (149)
Q Consensus 47 L~g~Is~eeF~~iI~~IN~~L~~A~~~s~~n~~e~ 81 (149)
+.+++++.+...+-+.|-+||-.|..++|+-++-.
T Consensus 13 ~~~Klse~~l~~L~~~~sdYl~~Aa~vdw~qvi~~ 47 (241)
T 3seo_A 13 QSPKLSEQELDELANNLADYLFQAADIDWHQVISE 47 (241)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred hchhcCHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 56799999999999999999999999999865543
No 6
>2zhy_A ATP:COB(I)alamin adenosyltransferase, putative; helix bundle; 1.80A {Burkholderia thailandensis} PDB: 2zhz_A*
Probab=33.76 E-value=1.5e+02 Score=22.34 Aligned_cols=64 Identities=11% Similarity=0.056 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc----chhhHHHHHHHHHHHHHHHhhhc---chhhHHHHHHHHHHHHHHhhc
Q psy4115 54 QVYEYTINQMNVYFQEAESV----SCKSYCEGCMACLTAYFVYLCAE---THYEKCLKKVAKFIAEQNENV 117 (149)
Q Consensus 54 eeF~~iI~~IN~~L~~A~~~----s~~n~~e~~L~clT~~l~~~~~~---t~~kr~l~~le~yIe~~N~~~ 117 (149)
=|+--+|+.+|..+--|-.. ..+..+..+-.-|=--...+... ...+..+..||++|++.|..+
T Consensus 33 iea~G~vDElns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~la~~~~~~i~~~~v~~LE~~id~~~~~l 103 (183)
T 2zhy_A 33 IAAIGDVDELNSQIGVLLAEPLPDDVRAALSAIQHDLFDLGGELCIPGHAAITDAHLARLDGWLAHYNGQL 103 (183)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred eeeeeeHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 47788999999998766542 12222322211111111222221 123578999999999999976
No 7
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=32.22 E-value=28 Score=23.23 Aligned_cols=17 Identities=6% Similarity=0.276 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy4115 100 EKCLKKVAKFIAEQNEN 116 (149)
Q Consensus 100 kr~l~~le~yIe~~N~~ 116 (149)
+..+++||+||+.+=-+
T Consensus 34 ~~~v~eLEdYID~LLvR 50 (75)
T 3tso_C 34 DTHIRELEDYIDNLLVR 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56899999999976443
No 8
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=31.34 E-value=21 Score=23.14 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=13.8
Q ss_pred chhhcCCCchHHHHHHH
Q psy4115 44 PQELEGKIERQVYEYTI 60 (149)
Q Consensus 44 P~eL~g~Is~eeF~~iI 60 (149)
|.-|+-|+|.++|+++.
T Consensus 27 ~~~lE~yLsdedF~~vF 43 (68)
T 1qzp_A 27 RMRLERHLSAEDFSRVF 43 (68)
T ss_dssp GGGCGGGBCHHHHHHHS
T ss_pred chHHHhhCCHHHHHHHH
Confidence 44578899999999875
No 9
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=29.57 E-value=24 Score=22.87 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=13.7
Q ss_pred chhhcCCCchHHHHHHH
Q psy4115 44 PQELEGKIERQVYEYTI 60 (149)
Q Consensus 44 P~eL~g~Is~eeF~~iI 60 (149)
|.-|+-++|.++|+++.
T Consensus 26 ~~~lE~yLsdedF~~vF 42 (67)
T 1yu8_X 26 PSAKENHLSDEDFKAVF 42 (67)
T ss_dssp TTCGGGGSCHHHHHHHH
T ss_pred hHHHHhcCCHHHHHHHH
Confidence 44478899999999875
No 10
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=28.82 E-value=24 Score=22.88 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=13.0
Q ss_pred hhhcCCCchHHHHHHH
Q psy4115 45 QELEGKIERQVYEYTI 60 (149)
Q Consensus 45 ~eL~g~Is~eeF~~iI 60 (149)
.-|+-++|.++|+++.
T Consensus 27 ~~lE~yLsdedF~~vF 42 (67)
T 2k6m_S 27 LKLEIYLTDEDFEFAL 42 (67)
T ss_dssp TBCGGGSCHHHHHHHT
T ss_pred hHHHhhCCHHHHHHHH
Confidence 3477899999999865
No 11
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Probab=25.19 E-value=12 Score=27.24 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhccchh-hHHHHHHHHHHHHHHHhhhcchhhHHHH-----HHHHHHHHHHhh
Q psy4115 54 QVYEYTINQMNVYFQEAESVSCK-SYCEGCMACLTAYFVYLCAETHYEKCLK-----KVAKFIAEQNEN 116 (149)
Q Consensus 54 eeF~~iI~~IN~~L~~A~~~s~~-n~~e~~L~clT~~l~~~~~~t~~kr~l~-----~le~yIe~~N~~ 116 (149)
..|...|.++-+||-.-|.++.. |+=|. =+|+-+|.++..-..-++|+ ++.+.++.+|.+
T Consensus 13 S~F~~~i~~LsdyLLqDYPVtVasNLQdd---elC~alW~L~lAqrwm~rLk~vaGs~m~~Lle~VntE 78 (134)
T 1ete_A 13 SDFAVKIRELSDYLLQDYPVTVASNLQDD---ELCGGLWRLVLAQRWMERLKTVAGSKMQGLLERVNTE 78 (134)
T ss_dssp TTHHHHHHHHHTTSBTTCEEEEESCBCCC---TTTHHHHHHHHHHHHHHHHHTTBCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCeecccccccH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhccc
Confidence 46999999999999999997544 54444 24677888887744433333 367899999986
No 12
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=24.56 E-value=2.7e+02 Score=23.01 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=38.2
Q ss_pred EEEEccCCCCCcccccccCCchhhcCCCchHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhc-chhhHH
Q psy4115 24 KIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSYCEGCMACLTAYFVYLCAE-THYEKC 102 (149)
Q Consensus 24 ~i~I~RDys~g~~~qF~t~fP~eL~g~Is~eeF~~iI~~IN~~L~~A~~~s~~n~~e~~L~clT~~l~~~~~~-t~~kr~ 102 (149)
...++|+|.+....++..--|-- ++.|.+.|+++|...-.+=|+.++.++-.-|..+.+. ...+..
T Consensus 76 ~~~~~r~~~~~~~~~~lP~i~~~-------------l~~l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e 142 (320)
T 3mkr_B 76 YGYPNRNWKDAGLKNGVPAVGLK-------------LNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQE 142 (320)
T ss_dssp EECCBTTTTTCCSSSCCBCCCCC-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHH
T ss_pred hhhhcCCccccccccCCCCcccC-------------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHH
Confidence 34689999875444442222211 2233345667777533444555556655555554332 334444
Q ss_pred HHHHHHHHH
Q psy4115 103 LKKVAKFIA 111 (149)
Q Consensus 103 l~~le~yIe 111 (149)
..++.++|+
T Consensus 143 ~~e~~eli~ 151 (320)
T 3mkr_B 143 IAEAQQLIT 151 (320)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455544443
No 13
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=24.55 E-value=87 Score=22.40 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=27.8
Q ss_pred hhcCCCchHHHHHHH-HHHHHHHHHhhcc-chhhHHHHHHHHHH
Q psy4115 46 ELEGKIERQVYEYTI-NQMNVYFQEAESV-SCKSYCEGCMACLT 87 (149)
Q Consensus 46 eL~g~Is~eeF~~iI-~~IN~~L~~A~~~-s~~n~~e~~L~clT 87 (149)
.|+++|+...+..|+ +.|...|++.--. .....++.+..+|.
T Consensus 104 gl~~~l~d~~~~~I~~~~~~~~fr~g~y~~gi~~~i~~i~~~l~ 147 (157)
T 2kw7_A 104 GLEGYLPDGLLSRIIHDRMIPHFRSGNYAEGLSEGVLAVQQVLD 147 (157)
T ss_dssp TTTTTCCHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cHHhhCCHHHHHHHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 377889999999999 7788888754221 33444444444443
No 14
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=24.18 E-value=29 Score=23.72 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.6
Q ss_pred hhhcCCCchHHHHHHHH
Q psy4115 45 QELEGKIERQVYEYTIN 61 (149)
Q Consensus 45 ~eL~g~Is~eeF~~iI~ 61 (149)
.-||-++|.+||+++..
T Consensus 42 tklE~YLSdedF~~vFg 58 (88)
T 1ujs_A 42 TRLERHLSQEEFYQVFG 58 (88)
T ss_dssp TTGGGGSCTTHHHHHHS
T ss_pred HHHHhcCCHHHHHHHHC
Confidence 34788999999998763
No 15
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=23.53 E-value=47 Score=23.52 Aligned_cols=17 Identities=6% Similarity=0.276 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy4115 100 EKCLKKVAKFIAEQNEN 116 (149)
Q Consensus 100 kr~l~~le~yIe~~N~~ 116 (149)
+..+++||+||+.+=-+
T Consensus 66 d~~IrELEDYID~LLvR 82 (107)
T 2gzd_C 66 DTHIRELEDYIDNLLVR 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35789999999976543
No 16
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=23.48 E-value=2.3e+02 Score=20.96 Aligned_cols=34 Identities=6% Similarity=0.059 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHH
Q psy4115 51 IERQVYEYTINQMNVYFQEAESVSCKSYCEGCMACLT 87 (149)
Q Consensus 51 Is~eeF~~iI~~IN~~L~~A~~~s~~n~~e~~L~clT 87 (149)
=+||...++|.++|..|..+- |+-..=++|+|.=
T Consensus 3 sDPE~L~~Lv~kV~~WLi~sR---WrK~q~~~lsvIK 36 (148)
T 3gn4_A 3 SDPDHLAELVKRVNHWLICSR---WKKVQWCSLSVIK 36 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 368999999999999999886 6666666666654
No 17
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=22.21 E-value=1.8e+02 Score=22.37 Aligned_cols=53 Identities=4% Similarity=-0.058 Sum_probs=34.3
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhcchhhH
Q psy4115 48 EGKIERQVYEYTINQMNVYFQEAESVSCKSYCEGCMACLTAYFVYLCAETHYEK 101 (149)
Q Consensus 48 ~g~Is~eeF~~iI~~IN~~L~~A~~~s~~n~~e~~L~clT~~l~~~~~~t~~kr 101 (149)
.+.++.++|++.+.++..+|...... ....-+.++.++.+-=+-++.+-..+|
T Consensus 99 ~~~~~~~~~~~l~~~~~~~l~~v~~~-~~~~~~~l~eIm~AqdFQDLTGQ~I~K 151 (214)
T 1kmi_Z 99 ADPIDLADARELVTDTRQFLADVPAH-TSFTNAQLLKIMMAQDFQDLTGQVIKR 151 (214)
T ss_dssp TSSCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45688999999999999999877654 123334444444444455555544444
No 18
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=22.16 E-value=79 Score=20.56 Aligned_cols=31 Identities=6% Similarity=0.218 Sum_probs=24.5
Q ss_pred ccccCCchhhcCCCchHHHHHHHHHHHHHHHHh
Q psy4115 38 RFQTHFPQELEGKIERQVYEYTINQMNVYFQEA 70 (149)
Q Consensus 38 qF~t~fP~eL~g~Is~eeF~~iI~~IN~~L~~A 70 (149)
++.+-| +|.+-+++++...+|+++.+.+.+.
T Consensus 45 ~YE~m~--Il~P~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 45 RYEVNI--VLNPNLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp EEEEEE--EECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEE--EECCCCCHHHHHHHHHHHHHHHHhc
Confidence 444444 4788899999999999999998764
No 19
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=21.97 E-value=42 Score=23.35 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.2
Q ss_pred hhcCcCCCceeeCccccceEEEEEEEe
Q psy4115 115 ENVFLPRALMLVNPAERGLRVIEIAIL 141 (149)
Q Consensus 115 ~~~~~~~Gl~ii~Pr~~G~lslei~i~ 141 (149)
-++++|+|+++.=| +-|+-.+-|+..
T Consensus 10 ve~l~PkG~~vSip-~pGi~lfafh~~ 35 (106)
T 3aqy_A 10 LEAIYPKGLRVSIP-DDGFSLFAFHGK 35 (106)
T ss_dssp EEEESSSCEEEEEE-CSSCSEEEEEEE
T ss_pred EEEeCCCcEEEEEe-CCCcEEEEEEEE
Confidence 36789999999999 999977767543
No 20
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=20.28 E-value=40 Score=21.85 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHH
Q psy4115 81 GCMACLTAYFVYLCAETHYEKCLKKVAK 108 (149)
Q Consensus 81 ~~L~clT~~l~~~~~~t~~kr~l~~le~ 108 (149)
.++|++.+.+|.++...+=+|..++.|+
T Consensus 10 ~liGl~lLliwKll~~i~DrrEyakFE~ 37 (67)
T 1s4x_A 10 SSGLVPRGSHMKLLITIHDRKEFAKFEE 37 (67)
T ss_dssp -----------CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4688899999999977665666666554
No 21
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=20.24 E-value=57 Score=24.57 Aligned_cols=40 Identities=15% Similarity=0.384 Sum_probs=29.8
Q ss_pred CCchHHHHHHHHHHHHH-H-HHhhcc---chhhHHHHHHHHHHHH
Q psy4115 50 KIERQVYEYTINQMNVY-F-QEAESV---SCKSYCEGCMACLTAY 89 (149)
Q Consensus 50 ~Is~eeF~~iI~~IN~~-L-~~A~~~---s~~n~~e~~L~clT~~ 89 (149)
.+++++|+++|+.+-.. + .++|+. +|-+|.+.+...||+-
T Consensus 78 ~~~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk 122 (168)
T 2wp7_A 78 EVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGR 122 (168)
T ss_dssp CCCHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCC
Confidence 48899999999999764 3 566764 6777777776666653
Done!