Query psy4115
Match_columns 149
No_of_seqs 107 out of 164
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 17:22:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4115.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4115hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nhya1 a.45.1.1 (A:76-219) GS 38.7 40 0.0029 21.5 6.0 63 54-116 59-123 (144)
2 d1tdza1 a.156.1.2 (A:132-219) 35.6 11 0.00079 23.7 2.4 35 41-75 51-85 (88)
3 d1ctda_ a.39.1.5 (A:) Troponin 35.1 11 0.00077 20.1 1.9 19 43-61 13-31 (34)
4 d1r2za1 a.156.1.2 (A:135-228) 34.2 12 0.00088 23.7 2.5 33 42-74 52-84 (94)
5 d1k82a1 a.156.1.2 (A:129-216) 31.8 14 0.001 23.1 2.4 34 42-75 52-85 (88)
6 d2q3la1 c.13.2.2 (A:1-125) Unc 29.1 3.6 0.00026 27.6 -1.0 28 46-73 24-51 (125)
7 d1qzpa_ a.14.1.1 (A:) Dematin 28.2 12 0.00089 22.9 1.6 18 44-61 27-44 (68)
8 d1m15a2 d.128.1.2 (A:96-357) A 28.1 53 0.0038 24.4 5.7 55 5-70 2-64 (262)
9 d1yu5x1 a.14.1.1 (X:10-76) Vil 27.9 13 0.00093 22.7 1.6 18 44-61 26-43 (67)
10 d1euma_ a.25.1.1 (A:) Non-hem 27.3 64 0.0046 21.3 5.6 61 52-116 2-63 (161)
11 d1a4pa_ a.39.1.2 (A:) Calcycli 27.1 63 0.0046 19.6 5.9 15 48-62 22-36 (92)
12 d1ee8a1 a.156.1.2 (A:122-210) 26.7 18 0.0013 22.5 2.4 34 42-75 52-85 (89)
13 d1wlza1 a.39.1.7 (A:229-311) D 24.6 17 0.0013 21.4 1.9 17 48-64 34-50 (83)
14 d1s3qa1 a.25.1.1 (A:3-164) Non 23.0 86 0.0062 20.6 5.6 62 51-116 2-64 (162)
15 d1v4pa_ d.67.1.2 (A:) Hypothet 20.9 25 0.0018 23.4 2.3 28 48-75 47-74 (151)
16 d1eija_ a.5.6.1 (A:) Hypotheti 20.7 22 0.0016 21.8 1.7 19 46-64 51-69 (72)
17 d2fcea1 a.39.1.5 (A:84-144) Ca 20.6 15 0.0011 20.7 0.8 18 48-65 15-32 (61)
No 1
>d1nhya1 a.45.1.1 (A:76-219) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.66 E-value=40 Score=21.54 Aligned_cols=63 Identities=5% Similarity=0.044 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhc-c-chhhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHhh
Q psy4115 54 QVYEYTINQMNVYFQEAES-V-SCKSYCEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNEN 116 (149)
Q Consensus 54 eeF~~iI~~IN~~L~~A~~-~-s~~n~~e~~L~clT~~l~~~~~~t~~kr~l~~le~yIe~~N~~ 116 (149)
+++.+.+..+|+.|....- . +--++.|-.++++..++.............-.|.+|++...++
T Consensus 59 ~~~~~~l~~le~~L~~~~~l~Gd~~T~ADi~l~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~ 123 (144)
T d1nhya1 59 DAVDKIVDIFENRLKNYTYLATENISLADLVAASIFTRYFESLFGTEWRAQHPAIVRWFNTVRAS 123 (144)
T ss_dssp HHHHHHHHHHHHHHTTCSSSSSSSCCHHHHHHHHHHHHHHHHTCCHHHHHHCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCcccccccccchHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCC
Confidence 4455556666666644322 2 2237778787777766555444444445566799999988763
No 2
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=35.58 E-value=11 Score=23.67 Aligned_cols=35 Identities=9% Similarity=0.084 Sum_probs=30.2
Q ss_pred cCCchhhcCCCchHHHHHHHHHHHHHHHHhhccch
Q psy4115 41 THFPQELEGKIERQVYEYTINQMNVYFQEAESVSC 75 (149)
Q Consensus 41 t~fP~eL~g~Is~eeF~~iI~~IN~~L~~A~~~s~ 75 (149)
...|....+.|+.+|++.+...+...|.+|.....
T Consensus 51 ~I~P~~~~~~Ls~~~~~~L~~~i~~vl~~ai~~gG 85 (88)
T d1tdza1 51 KIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGG 85 (88)
T ss_dssp TCCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HcCccchhhHcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34687788899999999999999999999987643
No 3
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=35.07 E-value=11 Score=20.07 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.1
Q ss_pred CchhhcCCCchHHHHHHHH
Q psy4115 43 FPQELEGKIERQVYEYTIN 61 (149)
Q Consensus 43 fP~eL~g~Is~eeF~~iI~ 61 (149)
|-.--+|+|+.+||.+|+.
T Consensus 13 fDkNaDGyiD~eEl~~ilr 31 (34)
T d1ctda_ 13 FDKNADGYIDIEELGEILR 31 (34)
T ss_dssp TCCSSSSCBCHHHHHHHHH
T ss_pred HccCCcccccHHHHHHHHH
Confidence 4444579999999999875
No 4
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=34.17 E-value=12 Score=23.72 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=29.2
Q ss_pred CCchhhcCCCchHHHHHHHHHHHHHHHHhhccc
Q psy4115 42 HFPQELEGKIERQVYEYTINQMNVYFQEAESVS 74 (149)
Q Consensus 42 ~fP~eL~g~Is~eeF~~iI~~IN~~L~~A~~~s 74 (149)
.-|....+.|+.+|++.+.+.+...|.+|....
T Consensus 52 I~P~~~~~~Ls~~e~~~L~~~~~~vl~~ai~~g 84 (94)
T d1r2za1 52 ILPGRPAASLSSKEIERLHEEMVATIGEAVMKG 84 (94)
T ss_dssp CCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 467777888999999999999999999999853
No 5
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=31.80 E-value=14 Score=23.15 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCchhhcCCCchHHHHHHHHHHHHHHHHhhccch
Q psy4115 42 HFPQELEGKIERQVYEYTINQMNVYFQEAESVSC 75 (149)
Q Consensus 42 ~fP~eL~g~Is~eeF~~iI~~IN~~L~~A~~~s~ 75 (149)
.-|......|+++|++.+...|-..|.+|+....
T Consensus 52 I~P~~~~~~L~~~~~~~L~~~i~~vl~~a~~~gG 85 (88)
T d1k82a1 52 IHPDRLASSLSLAECELLARVIKAVLLRSIEQGG 85 (88)
T ss_dssp CCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccChHHHCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4677788899999999999999999999987643
No 6
>d2q3la1 c.13.2.2 (A:1-125) Uncharacterized protein Shew3102 {Shewanella loihica [TaxId: 359303]}
Probab=29.10 E-value=3.6 Score=27.65 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=24.4
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHHhhcc
Q psy4115 46 ELEGKIERQVYEYTINQMNVYFQEAESV 73 (149)
Q Consensus 46 eL~g~Is~eeF~~iI~~IN~~L~~A~~~ 73 (149)
+++|+|+.+++++++..|+..+.+...+
T Consensus 24 ~~~G~lt~~D~~~~~~~l~~~l~~~~~~ 51 (125)
T d2q3la1 24 KAVGKLTHEDYEQMTPLLESALAGIKTP 51 (125)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTTCCSS
T ss_pred EEEeeECHHHHHHHHHHHHHHHHhcCCc
Confidence 5789999999999999999999876543
No 7
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.19 E-value=12 Score=22.87 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=14.1
Q ss_pred chhhcCCCchHHHHHHHH
Q psy4115 44 PQELEGKIERQVYEYTIN 61 (149)
Q Consensus 44 P~eL~g~Is~eeF~~iI~ 61 (149)
|.-|+-++|.++|+++..
T Consensus 27 ~~~lE~yLsd~dF~~vFg 44 (68)
T d1qzpa_ 27 RMRLERHLSAEDFSRVFA 44 (68)
T ss_dssp GGGCGGGBCHHHHHHHSS
T ss_pred hHHHHhhCCHHHHHHHHC
Confidence 455888999999988653
No 8
>d1m15a2 d.128.1.2 (A:96-357) Arginine kinase, C-terminal domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=28.08 E-value=53 Score=24.36 Aligned_cols=55 Identities=7% Similarity=0.057 Sum_probs=39.1
Q ss_pred ccccCCCCCCCCC--------CcceeeEEEEccCCCCCcccccccCCchhhcCCCchHHHHHHHHHHHHHHHHh
Q psy4115 5 KEKSMSQATTPDL--------NAMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEA 70 (149)
Q Consensus 5 ~~~~~~~~~~~~~--------~~~~~~~i~I~RDys~g~~~qF~t~fP~eL~g~Is~eeF~~iI~~IN~~L~~A 70 (149)
..|+.+.+|.... .-...-.||+-|-.++= .|| +.++.+|.+++.+.|-+.|...
T Consensus 2 d~hp~~~~~~~~~l~~~dp~~~~ViSsRiRlaRNl~g~-------~Fp----~~~s~~e~~~v~~~i~~~l~~l 64 (262)
T d1m15a2 2 DKHPPKQWGDINTLVGLDPAGQFIISTRVRCGRSLQGY-------PFN----PCLTAEQYKEMEEKVSSTLSSM 64 (262)
T ss_dssp CCCCCCCCCCGGGCCBSCTTCSSEEEEEEEEEECBTTC-------CCG----GGCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCCcccccchhhccCCCCcccEEEEeeEEeeeccCCC-------CCC----ccCCHHHHHHHHHHHHHHHHhC
Confidence 3466666644333 22346789999988872 455 7789999999999998888653
No 9
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.95 E-value=13 Score=22.71 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=14.4
Q ss_pred chhhcCCCchHHHHHHHH
Q psy4115 44 PQELEGKIERQVYEYTIN 61 (149)
Q Consensus 44 P~eL~g~Is~eeF~~iI~ 61 (149)
|.-|+-++|.++|+++..
T Consensus 26 ~~~lE~yLsd~dF~~vFg 43 (67)
T d1yu5x1 26 PSRKENHLSDEDFKAVFG 43 (67)
T ss_dssp TTCGGGGSCHHHHHHHHS
T ss_pred hHHHHhhCCHHHHHHHHC
Confidence 445888999999998754
No 10
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]}
Probab=27.33 E-value=64 Score=21.32 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHhh
Q psy4115 52 ERQVYEYTINQMNVYFQEAESV-SCKSYCEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNEN 116 (149)
Q Consensus 52 s~eeF~~iI~~IN~~L~~A~~~-s~~n~~e~~L~clT~~l~~~~~~t~~kr~l~~le~yIe~~N~~ 116 (149)
+++--..+=++||..|..++-+ +...|+++. + .-.+.-++..+....+...+++++.+|.+
T Consensus 2 ~~~~~~~LN~qi~~El~as~~Yl~~a~~~~~~-~---l~g~a~~f~~~a~EE~~HA~~l~~yl~~r 63 (161)
T d1euma_ 2 KPEMIEKLNEQMNLELYSSLLYQQMSAWCSYH-T---FEGAAAFLRRHAQEEMTHMQRLFDYLTDT 63 (161)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555666777777777765 556666654 1 12223444555566778889999998874
No 11
>d1a4pa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), P11 s100a10, calpactin [TaxId: 9606]}
Probab=27.06 E-value=63 Score=19.59 Aligned_cols=15 Identities=7% Similarity=0.286 Sum_probs=13.1
Q ss_pred cCCCchHHHHHHHHH
Q psy4115 48 EGKIERQVYEYTINQ 62 (149)
Q Consensus 48 ~g~Is~eeF~~iI~~ 62 (149)
+|.|+.+||.+.+.+
T Consensus 22 dG~is~~El~~~l~~ 36 (92)
T d1a4pa_ 22 KGYLTKEDLRVLMEK 36 (92)
T ss_dssp GCSBCHHHHHHHHHH
T ss_pred CCEEcHHHHHHHHHH
Confidence 588999999999875
No 12
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=26.66 E-value=18 Score=22.49 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=29.5
Q ss_pred CCchhhcCCCchHHHHHHHHHHHHHHHHhhccch
Q psy4115 42 HFPQELEGKIERQVYEYTINQMNVYFQEAESVSC 75 (149)
Q Consensus 42 ~fP~eL~g~Is~eeF~~iI~~IN~~L~~A~~~s~ 75 (149)
.-|....+.|+.+|++.+...+-..|.+|+....
T Consensus 52 I~P~~~~~~Ls~~e~~~L~~~i~~vl~~ai~~gG 85 (89)
T d1ee8a1 52 LSPFRPARSLTEEEARRLYRALREVLAEAVELGG 85 (89)
T ss_dssp CCSSSBGGGCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCccchhhhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4577778889999999999999999999987643
No 13
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.62 E-value=17 Score=21.38 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.8
Q ss_pred cCCCchHHHHHHHHHHH
Q psy4115 48 EGKIERQVYEYTINQMN 64 (149)
Q Consensus 48 ~g~Is~eeF~~iI~~IN 64 (149)
+|+|+.+||+.++..++
T Consensus 34 ~G~i~~~ef~~~l~~~~ 50 (83)
T d1wlza1 34 TNTISREEFRAICNRRV 50 (83)
T ss_dssp SSCBCHHHHHHHHHHHT
T ss_pred CceEChhHHHHHHHHhC
Confidence 58899999999998876
No 14
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.00 E-value=86 Score=20.58 Aligned_cols=62 Identities=18% Similarity=0.087 Sum_probs=40.2
Q ss_pred CchHHHHHHHHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHhh
Q psy4115 51 IERQVYEYTINQMNVYFQEAESV-SCKSYCEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNEN 116 (149)
Q Consensus 51 Is~eeF~~iI~~IN~~L~~A~~~-s~~n~~e~~L~clT~~l~~~~~~t~~kr~l~~le~yIe~~N~~ 116 (149)
|+++--..+=++||..|..++-+ ....||++. ..-.+.-++..+....+...+++++.+|..
T Consensus 2 ~s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~~~----~l~g~a~~f~~~s~eE~~Ha~~l~~yl~~r 64 (162)
T d1s3qa1 2 ISEKMVEALNRQINAEIYSAYLYLSMASYFDSI----GLKGFSNWMRVQWQEELMHAMKMFDFVSER 64 (162)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555666777777777775 666777653 222344444555567778888888888874
No 15
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.92 E-value=25 Score=23.42 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=24.7
Q ss_pred cCCCchHHHHHHHHHHHHHHHHhhccch
Q psy4115 48 EGKIERQVYEYTINQMNVYFQEAESVSC 75 (149)
Q Consensus 48 ~g~Is~eeF~~iI~~IN~~L~~A~~~s~ 75 (149)
+..++++++.++=+.+|+...+..+++.
T Consensus 47 ~~~~t~e~l~~iE~~~n~~I~~~~~v~~ 74 (151)
T d1v4pa_ 47 DRKPSDEEIREIERLANEKVKENAPIKI 74 (151)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHTCBCEE
T ss_pred cccchhHHHHHHHHHHHHhhhcccccce
Confidence 4678999999999999999999998754
No 16
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.71 E-value=22 Score=21.84 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=16.7
Q ss_pred hhcCCCchHHHHHHHHHHH
Q psy4115 46 ELEGKIERQVYEYTINQMN 64 (149)
Q Consensus 46 eL~g~Is~eeF~~iI~~IN 64 (149)
.|.++|++++|..++..++
T Consensus 51 ~i~~kisd~~L~~iL~~is 69 (72)
T d1eija_ 51 RVRSKITDEQLKELLKRVA 69 (72)
T ss_dssp SSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCcCHHHHHHHHHHhc
Confidence 3678999999999999886
No 17
>d2fcea1 a.39.1.5 (A:84-144) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.58 E-value=15 Score=20.68 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=15.0
Q ss_pred cCCCchHHHHHHHHHHHH
Q psy4115 48 EGKIERQVYEYTINQMNV 65 (149)
Q Consensus 48 ~g~Is~eeF~~iI~~IN~ 65 (149)
+|+|+.+||+.++.+++.
T Consensus 15 ~G~I~~~el~~~l~~~g~ 32 (61)
T d2fcea1 15 TGKVSVGDLRYMLTGLGE 32 (61)
T ss_dssp CSCEEHHHHHHHHHHTTC
T ss_pred CCeEeHHHHHHHHHHcCC
Confidence 689999999999987653
Done!