RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy4115
         (149 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.082
 Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 28/112 (25%)

Query: 42  HFPQ-ELEGKIE--RQVYEYTINQMNVYFQEAE------SVSCKSYCEGCMACLTAYFVY 92
           H    E   ++   R V+      ++  F E +      + +        +  L  Y  Y
Sbjct: 480 HLKNIEHPERMTLFRMVF------LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533

Query: 93  LC-AETHYEKCLKKVAKFIAEQNENVF-------LPRALM-----LVNPAER 131
           +C  +  YE+ +  +  F+ +  EN+        L  ALM     +   A +
Sbjct: 534 ICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585



 Score = 26.0 bits (56), Expect = 6.3
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 37/104 (35%)

Query: 45  QELEGK--IERQVYEYTINQMNVYFQEAESVS---------------CKSYCEGCMA--C 85
            +L     +E+Q  E TI+  ++Y +    +                 K++    +    
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 86  LTAYF----VYLCAETHYEKCLKKVAKFIAEQNENVFLPRALML 125
           L  YF     +     H    LK       E  E + L R + L
Sbjct: 469 LDQYFYSHIGH-----H----LKN-----IEHPERMTLFRMVFL 498


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 0.95
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 37/139 (26%)

Query: 13  TTP---DLNAMTCAKIFIQRDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQE 69
            +P    L  +  A   I +D      V F     +++  +I   VY+ T +  ++  + 
Sbjct: 424 ASPFHSHL--LVPASDLINKDLVKNN-VSFN---AKDI--QI--PVYD-TFDGSDL--RV 470

Query: 70  AESVSCKSYCEGCMACLTAYFVYLCAETHYEKCLKKVAKFIAEQNENVFLP------RAL 123
                 +   + C+  L            +E   +  A  I +     F P        L
Sbjct: 471 LSGSISERIVD-CIIRLPV---------KWETTTQFKATHILD-----FGPGGASGLGVL 515

Query: 124 MLVNPAERGLRVIEIAILD 142
              N    G+RVI    LD
Sbjct: 516 THRNKDGTGVRVIVAGTLD 534


>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2
          complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP
          biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens}
          PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
          Length = 76

 Score = 24.6 bits (54), Expect = 6.2
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 5/57 (8%)

Query: 9  MSQATTPDLNAMTCAKIFIQ----RDYTDGTMVRFQTHFPQELEGKIERQVYEYTIN 61
          MS+A  P+L      K+ ++    R    G +  F       ++  +E        N
Sbjct: 1  MSKAHPPELKKFMDKKLSLKLNGGRHVQ-GILRGFDPFMNLVIDECVEMATSGQQNN 56


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0717    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,167,832
Number of extensions: 114556
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 13
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.2 bits)