RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4115
         (149 letters)



>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli
           [TaxId: 562]}
          Length = 295

 Score = 25.3 bits (54), Expect = 3.2
 Identities = 5/21 (23%), Positives = 10/21 (47%)

Query: 120 PRALMLVNPAERGLRVIEIAI 140
           P +L+++N        +  AI
Sbjct: 1   PASLLILNGKSTDNLPLREAI 21


>d2gtaa1 a.204.1.2 (A:1-98) Hypothetical protein YpjD {Bacillus
           subtilis [TaxId: 1423]}
          Length = 98

 Score = 24.4 bits (53), Expect = 3.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 104 KKVAKFIAEQNENVFLPRALML 125
            +V ++I +  E  F P A+M 
Sbjct: 11  AEVDRYIGQFKEGYFSPLAMMA 32


>d3elga1 d.98.2.1 (A:20-146) Putative periplasmic protein BVU2443
           {Bacteroides vulgatus [TaxId: 821]}
          Length = 127

 Score = 24.0 bits (52), Expect = 6.3
 Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 3/32 (9%)

Query: 39  FQTHFPQELEGKIERQVYEYTI---NQMNVYF 67
            + ++      KIER    Y +   N + V F
Sbjct: 85  MKANYNGHKTVKIERNRKGYELTLENGLEVDF 116


>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase,
           C-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 225

 Score = 24.1 bits (52), Expect = 8.2
 Identities = 10/53 (18%), Positives = 12/53 (22%)

Query: 29  RDYTDGTMVRFQTHFPQELEGKIERQVYEYTINQMNVYFQEAESVSCKSYCEG 81
           R     T+ R   H    L  K    VY            +A          G
Sbjct: 113 RAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDHVARSVTG 165


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,265
Number of extensions: 22972
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 10
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (22.8 bits)