BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4120
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8INK9|MSRB_DROME Methionine-R-sulfoxide reductase B1 OS=Drosophila melanogaster
GN=SelR PE=1 SV=3
Length = 208
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 73/147 (49%), Gaps = 56/147 (38%)
Query: 4 NNNAGGCKIDKEELKKRLTPMQYHVTQ----------------EKGTERYI--------- 38
+N + ++KEEL+KRLTP+QY VTQ EKG + I
Sbjct: 44 DNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSS 103
Query: 39 -------------------------------GSNLLLLITNPDMVRTEVTCSKCDAHLGH 67
G N+LLLI +P+ +RTEV C++C+AH+GH
Sbjct: 104 ETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGGNILLLIAHPERIRTEVRCARCNAHMGH 163
Query: 68 VFNDGPAPTRRRFCINSASVDFVPDHP 94
VF DGP PTR+R+CINSAS++FV P
Sbjct: 164 VFEDGPKPTRKRYCINSASIEFVNADP 190
>sp|Q5R930|MSRB3_PONAB Methionine-R-sulfoxide reductase B3 OS=Pongo abelii GN=MSRB3 PE=2
SV=2
Length = 190
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 63/128 (49%), Gaps = 46/128 (35%)
Query: 10 CKI--DKEELKKRLTPMQYHVTQEKGTERYI------------------GSNLLLLITNP 49
CK+ ++EL+KRLTP+QYHVTQEKGTE G+ L T
Sbjct: 39 CKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKF 98
Query: 50 D--------------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCIN 83
D M R E +CS+C AHLGH+F+DGP PT +R+CIN
Sbjct: 99 DSGSGWPSFHDVISSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCIN 158
Query: 84 SASVDFVP 91
SA++ F P
Sbjct: 159 SAALSFTP 166
>sp|Q8BU85|MSRB3_MOUSE Methionine-R-sulfoxide reductase B3, mitochondrial OS=Mus musculus
GN=Msrb3 PE=1 SV=2
Length = 253
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 63/128 (49%), Gaps = 46/128 (35%)
Query: 10 CKI--DKEELKKRLTPMQYHVTQEKGTERYI------------------GSNLLLLITNP 49
CK+ ++EL+KRLTP+QYHVTQEKGTE G+ L T
Sbjct: 101 CKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKF 160
Query: 50 D--------------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCIN 83
D M R E +CS+C AHLGH+F+DGP PT +R+CIN
Sbjct: 161 DSGSGWPAFHDVISSEAIEFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCIN 220
Query: 84 SASVDFVP 91
SAS+ F P
Sbjct: 221 SASLSFTP 228
>sp|Q8IXL7|MSRB3_HUMAN Methionine-R-sulfoxide reductase B3 OS=Homo sapiens GN=MSRB3 PE=1
SV=2
Length = 192
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 63/128 (49%), Gaps = 46/128 (35%)
Query: 10 CKI--DKEELKKRLTPMQYHVTQEKGTERYI------------------GSNLLLLITNP 49
CK+ ++EL+KRLTP+QYHVTQEKGTE G+ L T
Sbjct: 41 CKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKF 100
Query: 50 D--------------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCIN 83
D M R E +CS+C AHLGH+F+DGP PT +R+CIN
Sbjct: 101 DSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCIN 160
Query: 84 SASVDFVP 91
SA++ F P
Sbjct: 161 SAALSFTP 168
>sp|Q8DJK9|MSRB_THEEB Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus
elongatus (strain BP-1) GN=msrB PE=3 SV=1
Length = 135
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 58/121 (47%), Gaps = 44/121 (36%)
Query: 16 ELKKRLTPMQYHVTQEKGTERYI------------------GSNLLLLITNPD------- 50
E + +LTP QY+VT++KGTER G+ L T D
Sbjct: 10 EWQAQLTPEQYYVTRKKGTERAFTGCYWNNKKPGLYSCVCCGTPLFRSETKYDSGTGWPS 69
Query: 51 -------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
MVRTEV C+ CDAHLGHVF DGP PT R+CINSA++ FVP
Sbjct: 70 FWQPLDPNNIRMERDLSHGMVRTEVLCAVCDAHLGHVFEDGPPPTGLRYCINSAALAFVP 129
Query: 92 D 92
+
Sbjct: 130 E 130
>sp|Q46EH1|MSRB_METBF Peptide methionine sulfoxide reductase MsrB OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=msrB PE=3 SV=1
Length = 142
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 56/120 (46%), Gaps = 44/120 (36%)
Query: 14 KEELKKRLTPMQYHVTQEKGTERYIGSNL------------------------------- 42
+EE KK LTP QYHV ++KGTER NL
Sbjct: 10 EEEWKKVLTPEQYHVLRQKGTERPFSGNLYYNKEKGVYTCAACGQELFSSDTKFESGTGW 69
Query: 43 -------------LLLITNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
L T+ M R EV CS+C +HLGHVF DGPAPT +R+CINS S++F
Sbjct: 70 PSFYDVISSDRVRLKEDTSYFMNRIEVVCSRCGSHLGHVFEDGPAPTGKRYCINSVSLNF 129
>sp|B0BYW4|MSRB_ACAM1 Peptide methionine sulfoxide reductase MsrB OS=Acaryochloris marina
(strain MBIC 11017) GN=msrB PE=3 SV=1
Length = 131
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 57/122 (46%), Gaps = 44/122 (36%)
Query: 14 KEELKKRLTPMQYHVTQEKGTERYI------------------GSNLLLLITNPD----- 50
++E + +LTP Q+ VT+ GTER G+ L T D
Sbjct: 8 EQEWEAQLTPEQFRVTRHHGTERAFTGEYHDLKAAGTYQCVCCGTELFTSDTKFDSGTGW 67
Query: 51 ---------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
MVRTEV C+ CDAHLGHVFNDGP PT R+C+NSA++ F
Sbjct: 68 PSFWAPADKTHVEEKTDRSLFMVRTEVLCAVCDAHLGHVFNDGPKPTGLRYCMNSAALKF 127
Query: 90 VP 91
VP
Sbjct: 128 VP 129
>sp|Q2SJP9|MSRB_HAHCH Peptide methionine sulfoxide reductase MsrB OS=Hahella chejuensis
(strain KCTC 2396) GN=msrB PE=3 SV=1
Length = 139
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 58/123 (47%), Gaps = 44/123 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTER--------------YI----GSNLLLLITNPD-- 50
K +E +++LT QY VT+ KGTER Y+ G L D
Sbjct: 5 KKSDQEWRQQLTDEQYRVTRGKGTERPFTGEYYDTKEAGVYVCVCCGEPLFTSENKYDSG 64
Query: 51 ------------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
MVRTE+ CSKCDAHLGHVF+DGP PT +R+C+NSAS
Sbjct: 65 CGWPSFWAPMDKEKITEEIDMSHMMVRTEILCSKCDAHLGHVFDDGPQPTGQRYCVNSAS 124
Query: 87 VDF 89
+ F
Sbjct: 125 LRF 127
>sp|B1J4W5|MSRB_PSEPW Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas putida
(strain W619) GN=msrB PE=3 SV=1
Length = 133
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 58/127 (45%), Gaps = 46/127 (36%)
Query: 11 KIDK--EELKKRLTPMQYHVTQEKGTER----------------YIGSNLLLLITNPD-- 50
KIDK EE + L P QY V + KGTER I +L L +N
Sbjct: 3 KIDKTLEEWRAMLDPEQYQVCRLKGTERPFTGKYNSEKRAGTYHCICCDLPLFDSNTKFD 62
Query: 51 --------------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINS 84
M+RTEVTC++CDAHLGHVF DGP PT R+CINS
Sbjct: 63 SGCGWPSFYAPIEDSAMIETRDTSHGMIRTEVTCAQCDAHLGHVFPDGPPPTGLRYCINS 122
Query: 85 ASVDFVP 91
+DF P
Sbjct: 123 VCLDFKP 129
>sp|Q72EK2|MSRB_DESVH Peptide methionine sulfoxide reductase MsrB OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=msrB PE=3 SV=1
Length = 143
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 55/126 (43%), Gaps = 44/126 (34%)
Query: 10 CKIDKEELKKRLTPMQYHVTQEKGTE------------------------------RYIG 39
K +EELKKRLTP+QY VTQE+GTE +Y
Sbjct: 1 MKPSREELKKRLTPLQYDVTQEEGTEPPFRNEYWDEKREGLYVDIVSGEPLFSSRDKYDS 60
Query: 40 SNLLLLITNP--------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSA 85
T P RTEV D+HLGHVF DGP PT R+CINSA
Sbjct: 61 GTGWPSFTRPVDPQGIVERVDRKLFTTRTEVRSRNGDSHLGHVFPDGPQPTGLRYCINSA 120
Query: 86 SVDFVP 91
++ FVP
Sbjct: 121 ALRFVP 126
>sp|Q5WH73|MSRB_BACSK Peptide methionine sulfoxide reductase MsrB OS=Bacillus clausii
(strain KSM-K16) GN=msrB PE=3 SV=1
Length = 144
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 58/126 (46%), Gaps = 44/126 (34%)
Query: 10 CKIDKEELKKRLTPMQYHVTQEKGTER--------------YI----GSNLLL------- 44
K K+ELKK+LTP+QY VTQE GTE Y+ G L
Sbjct: 2 TKPQKDELKKKLTPIQYFVTQENGTEPPFQNEYYETEEEGIYVDVVSGKPLFSSKDKYDA 61
Query: 45 ---------------LITNPD----MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSA 85
+I D MVRTEV D+HLGHVF DGP P R+CINSA
Sbjct: 62 GCGWPSFTKPIDEAEIIEKEDRSHFMVRTEVRSKNADSHLGHVFPDGPGPNGLRYCINSA 121
Query: 86 SVDFVP 91
++ F+P
Sbjct: 122 ALRFIP 127
>sp|Q0DC89|MSRB1_ORYSJ Peptide methionine sulfoxide reductase B1, chloroplastic OS=Oryza
sativa subsp. japonica GN=MSRB1 PE=2 SV=2
Length = 214
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 58/119 (48%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERY------------------------------------- 37
EE +KRLT QY++T++KGTER
Sbjct: 92 EEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSGTGWP 151
Query: 38 -----IGSNLL--LLITNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
IG N+ L ++ M RTEV C+ CDAHLGHVF+DGP PT +R+CINSAS+
Sbjct: 152 SYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVFDDGPRPTGKRYCINSASLKL 210
>sp|Q8PWF5|MSRB_METMA Peptide methionine sulfoxide reductase MsrB OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=msrB PE=3 SV=1
Length = 140
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 57/128 (44%), Gaps = 46/128 (35%)
Query: 11 KIDK--EELKKRLTPMQYHVTQEKGTERYIGSNL-------------------------- 42
KI+K E+ K LTP QYHV ++KGTER NL
Sbjct: 5 KIEKSEEDWKSVLTPEQYHVLRQKGTERPFSGNLYYNKEKGIYTCAACGQELFSSDTKFE 64
Query: 43 -------LLLITNPD-----------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINS 84
+ + D M R EV CS+C +HLGHVF DGP PT +R+CINS
Sbjct: 65 SGTGWPSFYDVISSDRVRLHEDNSYFMKRIEVVCSRCGSHLGHVFEDGPEPTGQRYCINS 124
Query: 85 ASVDFVPD 92
S+ F +
Sbjct: 125 VSLGFTKE 132
>sp|Q3K935|MSRB_PSEPF Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
fluorescens (strain Pf0-1) GN=msrB PE=3 SV=1
Length = 131
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 40/56 (71%), Gaps = 2/56 (3%)
Query: 38 IGSNLLLLI--TNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
IG N + I T+ M+RTEV C+KCDAHLGHVF DGP PT R+CINS +D VP
Sbjct: 74 IGDNAMTEIRDTSHGMIRTEVKCAKCDAHLGHVFPDGPPPTGLRYCINSVCLDLVP 129
>sp|Q9C8M2|MSRB1_ARATH Peptide methionine sulfoxide reductase B1, chloroplastic
OS=Arabidopsis thaliana GN=MSRB1 PE=1 SV=1
Length = 202
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 60/122 (49%), Gaps = 44/122 (36%)
Query: 12 IDKEELKKRLTPMQYHVTQEKGTERY---------------------------------- 37
+ + E KKRLTP QY++T++KGTER
Sbjct: 73 LSENEWKKRLTPEQYYITRQKGTERAFTGEYWNSKTPGVYNCVCCDTPLFDSSTKFDSGT 132
Query: 38 --------IGSNLL--LLITNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASV 87
IG+N+ L ++ M R EV C+ C+AHLGHVF+DGP PT +R+C+NSA++
Sbjct: 133 GWPSYYQPIGNNVKTKLDLSIIFMPRQEVVCAVCNAHLGHVFDDGPRPTGKRYCLNSAAL 192
Query: 88 DF 89
Sbjct: 193 KL 194
>sp|B8GMG5|MSRB_THISH Peptide methionine sulfoxide reductase MsrB OS=Thioalkalivibrio sp.
(strain HL-EbGR7) GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 64/137 (46%), Gaps = 45/137 (32%)
Query: 1 MCDNNNAGGCKIDKEELKKRLTPMQYHVTQEKGTE-----RY------------------ 37
M +N + G +I E L++RL+P Y VT+ GTE RY
Sbjct: 1 MSNNQDRPG-QITDESLRERLSPEAYAVTRRAGTEPPFSGRYYDHHETGIYHCICCDAPL 59
Query: 38 -------------------IGSNLLLLI--TNPDMVRTEVTCSKCDAHLGHVFNDGPAPT 76
+ + L ++ T+ M+R EV C++CDAHLGHVF DGP PT
Sbjct: 60 FSSEHKFDSGSGWPSYWQPVSGDALSVVRDTSHGMIREEVRCARCDAHLGHVFPDGPPPT 119
Query: 77 RRRFCINSASVDFVPDH 93
R+CINS S+DF H
Sbjct: 120 GLRYCINSLSLDFKAAH 136
>sp|C3K735|MSRB_PSEFS Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
fluorescens (strain SBW25) GN=msrB PE=3 SV=1
Length = 130
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 34/41 (82%)
Query: 51 MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
M+RTEVTC+KCDAHLGHVF DGP PT R+CINS +D VP
Sbjct: 89 MIRTEVTCAKCDAHLGHVFPDGPPPTGLRYCINSVCLDLVP 129
>sp|A9MFH4|MSRB_SALAR Peptide methionine sulfoxide reductase MsrB OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrB PE=3
SV=1
Length = 137
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 55/123 (44%), Gaps = 44/123 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
++ EELKK+L+ MQ++VTQ +GTE LL L+ P
Sbjct: 4 QLSAEELKKKLSEMQFYVTQNRGTEPPFTGRLLHNKRDGVYHCLVCEAPLFHSHTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYQPVSKEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDF 89
+ F
Sbjct: 124 LAF 126
>sp|A5GQT3|MSRB_SYNR3 Peptide methionine sulfoxide reductase MsrB OS=Synechococcus sp.
(strain RCC307) GN=msrB PE=3 SV=1
Length = 136
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 44/118 (37%)
Query: 16 ELKKRLTPMQYHVTQEKGTERYI--------GSNLLLLI--------------------- 46
+ + +LTP Q+ +T+E GTER G + I
Sbjct: 15 DWRSKLTPEQFRITREGGTERAFTGAYWNHKGDGMYRCICCGAELFRSDRKFDSGTGWPS 74
Query: 47 ----TNPD-----------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
NP+ MVRTE+ C+KCD+HLGHVF D P PT R+C+NSAS+DF
Sbjct: 75 FWEGVNPEAIRTIQDVSHGMVRTEIRCAKCDSHLGHVFQDSPTPTGLRYCVNSASLDF 132
>sp|P65449|MSRB_SALTY Peptide methionine sulfoxide reductase MsrB OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|P65450|MSRB_SALTI Peptide methionine sulfoxide reductase MsrB OS=Salmonella typhi
GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|B4TUA8|MSRB_SALSV Peptide methionine sulfoxide reductase MsrB OS=Salmonella
schwarzengrund (strain CVM19633) GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|A9N292|MSRB_SALPB Peptide methionine sulfoxide reductase MsrB OS=Salmonella paratyphi
B (strain ATCC BAA-1250 / SPB7) GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|B4T3Y1|MSRB_SALNS Peptide methionine sulfoxide reductase MsrB OS=Salmonella newport
(strain SL254) GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|B4TGC8|MSRB_SALHS Peptide methionine sulfoxide reductase MsrB OS=Salmonella
heidelberg (strain SL476) GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|B5FJF9|MSRB_SALDC Peptide methionine sulfoxide reductase MsrB OS=Salmonella dublin
(strain CT_02021853) GN=msrB PE=3 SV=1
Length = 137
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|B0KUQ0|MSRB_PSEPG Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas putida
(strain GB-1) GN=msrB PE=3 SV=1
Length = 131
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 47 TNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
T+ M+RTEVTC++CDAHLGHVF DGPAPT R+CINS +D P
Sbjct: 85 TSHGMIRTEVTCARCDAHLGHVFPDGPAPTGLRYCINSVCIDLRP 129
>sp|Q8F7W8|MSRB_LEPIN Peptide methionine sulfoxide reductase MsrB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=msrB PE=3 SV=3
Length = 131
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTE--------------RYIGSNLLLLITNPD---------- 50
E+ KK LTP QY + ++KGTE Y+ + ++ + D
Sbjct: 10 EDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWP 69
Query: 51 --------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M RTE+ CSKC HLGHVFNDGP PT R+CINSAS+ F
Sbjct: 70 SFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDGPRPTGLRYCINSASLKF 128
>sp|Q72NN2|MSRB_LEPIC Peptide methionine sulfoxide reductase MsrB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=msrB PE=3 SV=3
Length = 131
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTE--------------RYIGSNLLLLITNPD---------- 50
E+ KK LTP QY + ++KGTE Y+ + ++ + D
Sbjct: 10 EDWKKELTPEQYRILRQKGTEMAFTGALYKNQDKGTYVCAACGAVLFSSDTKYESGSGWP 69
Query: 51 --------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M RTE+ CSKC HLGHVFNDGP PT R+CINSAS+ F
Sbjct: 70 SFYQPVKDGVVDKQKDSSHGMERTEILCSKCGGHLGHVFNDGPRPTGLRYCINSASLKF 128
>sp|B5F860|MSRB_SALA4 Peptide methionine sulfoxide reductase MsrB OS=Salmonella agona
(strain SL483) GN=msrB PE=3 SV=1
Length = 137
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 54/119 (45%), Gaps = 44/119 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP--------------- 49
EELKK+L+ MQ++VTQ++GTE LL L+ P
Sbjct: 8 EELKKKLSEMQFYVTQDRGTEPPFTGRLLHNKRDGVYHCLVCDMPLFHSHTKYDSGCGWP 67
Query: 50 -------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDF 89
M R E+ C CDAHLGHVF DGP PT R+C+NSAS+ F
Sbjct: 68 SFYQPVSEEAIRYIDDFSHGMQRVEIRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAF 126
>sp|Q1ID16|MSRB_PSEE4 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
entomophila (strain L48) GN=msrB PE=3 SV=1
Length = 131
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 56/127 (44%), Gaps = 46/127 (36%)
Query: 11 KIDK--EELKKRLTPMQYHVTQEKGTERYI------------------------------ 38
KIDK EE + L P QY V + KGTER
Sbjct: 3 KIDKTLEEWRAMLDPAQYQVCRLKGTERPFSGKYNSERRDGVYHCICCDLPLFDSKAKFD 62
Query: 39 --------------GSNLLLLITNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINS 84
+ + + T+ M+RTEVTC++CDAHLGHVF DGP PT R+CINS
Sbjct: 63 SGCGWPSFYEPIEEAAMIEIRDTSHGMIRTEVTCAQCDAHLGHVFPDGPPPTGLRYCINS 122
Query: 85 ASVDFVP 91
+D P
Sbjct: 123 VCLDLKP 129
>sp|Q6FAL8|MSRB_ACIAD Peptide methionine sulfoxide reductase MsrB OS=Acinetobacter sp.
(strain ADP1) GN=msrB PE=3 SV=1
Length = 139
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 44/121 (36%)
Query: 16 ELKKRLTPMQYHVTQEKGTE------------------RYIGSNLLLLITNPD------- 50
E ++ L+P +Y +T++KGTE R G+ L I+ D
Sbjct: 10 EWQRELSPEEYRITRQKGTEPAFTGQYWNTKQSGTYVCRCCGTELFSSISKYDSGCGWPS 69
Query: 51 -------------------MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
MVRTE+ C CDAHLGHVF DGP PT R+C+NSAS+
Sbjct: 70 FYKPINTTAIEEHDDFSHGMVRTEIVCHHCDAHLGHVFEDGPQPTGLRYCVNSASLQLKT 129
Query: 92 D 92
D
Sbjct: 130 D 130
>sp|Q48FR2|MSRB_PSE14 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=msrB PE=1
SV=1
Length = 131
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 51 MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
M+RTEV C+KCDAHLGHVF DGP PT R+CINS +D VP
Sbjct: 89 MIRTEVVCAKCDAHLGHVFPDGPPPTGLRYCINSVCLDLVP 129
>sp|Q9KCX2|MSRB_BACHD Peptide methionine sulfoxide reductase MsrB OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=msrB PE=3 SV=1
Length = 143
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 52/121 (42%), Gaps = 44/121 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTE------------------------------RYIGSNLLL 44
EELKK+LTP+QY VTQ GTE +Y
Sbjct: 6 EELKKKLTPLQYEVTQNNGTEPPFRNEYYDLEAEGIYVDIVSGKPLFSSKDKYDAGCGWP 65
Query: 45 LITNP--------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFV 90
T P M RTEV + D+HLGHVF DGP P R+CINSA++ F+
Sbjct: 66 SFTKPIDEEEVIEKEDRSHGMFRTEVRSKQADSHLGHVFPDGPGPNGLRYCINSAALRFI 125
Query: 91 P 91
P
Sbjct: 126 P 126
>sp|Q4ZQC6|MSRB_PSEU2 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas syringae
pv. syringae (strain B728a) GN=msrB PE=3 SV=1
Length = 131
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 51 MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
M+RTEV C+KCDAHLGHVF DGP PT R+CINS +D VP
Sbjct: 89 MIRTEVVCAKCDAHLGHVFPDGPPPTGLRYCINSVCLDLVP 129
>sp|O26807|MSRB_METTH Peptide methionine sulfoxide reductase MsrB OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=msrB PE=1 SV=1
Length = 151
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 36/41 (87%)
Query: 51 MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
MVR EV C++CDAHLGHVF+DGP PT +R+C+NSA++ F+P
Sbjct: 106 MVRCEVLCARCDAHLGHVFDDGPRPTGKRYCMNSAALKFIP 146
>sp|Q4K8U5|MSRB_PSEF5 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=msrB PE=3
SV=1
Length = 130
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 33/41 (80%)
Query: 51 MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
M+RTEV C+KCDAHLGHVF DGP PT R+CINS +D VP
Sbjct: 89 MIRTEVVCAKCDAHLGHVFPDGPPPTGLRYCINSVCLDLVP 129
>sp|A5W756|MSRB_PSEP1 Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=msrB PE=3 SV=1
Length = 131
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 47 TNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
T+ M+RTEVTC++CDAHLGHVF DGP PT R+CINS +D P
Sbjct: 85 TSHGMIRTEVTCARCDAHLGHVFPDGPPPTGLRYCINSVCIDLRP 129
>sp|Q88LQ6|MSRB_PSEPK Peptide methionine sulfoxide reductase MsrB OS=Pseudomonas putida
(strain KT2440) GN=msrB PE=3 SV=1
Length = 131
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 35/45 (77%)
Query: 47 TNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVP 91
T+ M+RTEVTC++CDAHLGHVF DGP PT R+CINS +D P
Sbjct: 85 TSHGMIRTEVTCARCDAHLGHVFPDGPPPTGLRYCINSVCIDLRP 129
>sp|P54155|MSRB_BACSU Peptide methionine sulfoxide reductase MsrB OS=Bacillus subtilis
(strain 168) GN=msrB PE=1 SV=1
Length = 143
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%)
Query: 45 LITNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVPDH 93
L T+ M+RTEV D+HLGHVFNDGP P R+CINSA++ FVP H
Sbjct: 79 LDTSHGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPKH 127
>sp|Q4FZX5|MSRB2_RAT Methionine-R-sulfoxide reductase B2, mitochondrial OS=Rattus
norvegicus GN=Msrb2 PE=2 SV=1
Length = 174
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 60/134 (44%), Gaps = 51/134 (38%)
Query: 12 IDKEELKKRLTPMQYHVTQEKGTER-----YI---------------------------- 38
+ K + +K+LTP Q++VT+EKGTE Y+
Sbjct: 41 LSKADWQKKLTPEQFYVTREKGTEAPFSGMYLKNKETGMYHCVCCDSPLFSSEKKYCSGT 100
Query: 39 ------------GSN------LLLLITNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRF 80
GS+ L L T+ R EV C +C+AHLGHVF DGP PT +RF
Sbjct: 101 GWPSFSEAHGTKGSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPDPTGQRF 160
Query: 81 CINSASVDFVPDHP 94
CINS ++ F P P
Sbjct: 161 CINSVALKFKPSKP 174
>sp|Q9KLX6|MSRAB_VIBCH Peptide methionine sulfoxide reductase MsrA/MsrB OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=msrAB PE=3 SV=2
Length = 378
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 44/121 (36%)
Query: 15 EELKKRLTPMQYHVTQEKGTERYIGS---------------------------------- 40
E+++ +LT +QY VTQ GTER +
Sbjct: 241 EQIRAKLTSLQYKVTQRDGTERPFDNEYWDNKEEGIYVDIVSGEPLFSSTDKYDSKTGWP 300
Query: 41 ------NLLLLITNPD----MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFV 90
N ++T D RTEV D+HLGHVFNDGPAPT R+C+NSA++ F+
Sbjct: 301 SFTQPLNSSYIVTKDDNSLFYTRTEVRSRFADSHLGHVFNDGPAPTGLRYCMNSAAMRFI 360
Query: 91 P 91
P
Sbjct: 361 P 361
>sp|B7MAY9|MSRB_ECO45 Peptide methionine sulfoxide reductase MsrB OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=msrB PE=3 SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPLSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
>sp|Q3Z2B6|MSRB_SHISS Peptide methionine sulfoxide reductase MsrB OS=Shigella sonnei
(strain Ss046) GN=msrB PE=3 SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
>sp|B1LDV3|MSRB_ECOSM Peptide methionine sulfoxide reductase MsrB OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=msrB PE=3 SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
>sp|B6IBJ9|MSRB_ECOSE Peptide methionine sulfoxide reductase MsrB OS=Escherichia coli
(strain SE11) GN=msrB PE=3 SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
>sp|B7N5B4|MSRB_ECOLU Peptide methionine sulfoxide reductase MsrB OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=msrB PE=3 SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
>sp|P0A746|MSRB_ECOLI Peptide methionine sulfoxide reductase MsrB OS=Escherichia coli
(strain K12) GN=msrB PE=1 SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
>sp|P0A747|MSRB_ECOL6 Peptide methionine sulfoxide reductase MsrB OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=msrB PE=3
SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
>sp|Q0TH50|MSRB_ECOL5 Peptide methionine sulfoxide reductase MsrB OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=msrB PE=3 SV=1
Length = 137
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 52/124 (41%), Gaps = 44/124 (35%)
Query: 11 KIDKEELKKRLTPMQYHVTQEKGTERYIGSNLL----------LLITNP----------- 49
K EELKK L+ MQ++VTQ GTE LL L+ P
Sbjct: 4 KPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVYHCLICDAPLFHSQTKYDSG 63
Query: 50 -----------------------DMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSAS 86
M R E+ C CDAHLGHVF DGP PT R+C+NSAS
Sbjct: 64 CGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHLGHVFPDGPQPTGERYCVNSAS 123
Query: 87 VDFV 90
+ F
Sbjct: 124 LRFT 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,478,969
Number of Sequences: 539616
Number of extensions: 1322370
Number of successful extensions: 2745
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2185
Number of HSP's gapped (non-prelim): 459
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)