Query psy4120
Match_columns 95
No_of_seqs 166 out of 1015
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 17:29:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e0o_A Peptide methionine sulf 100.0 5.6E-48 1.9E-52 277.4 7.8 84 10-93 2-128 (144)
2 2k8d_A Peptide methionine sulf 100.0 5.6E-48 1.9E-52 279.1 4.6 85 9-93 20-148 (151)
3 3hcg_A Peptide methionine sulf 100.0 4.8E-47 1.6E-51 273.0 8.3 84 10-93 3-131 (146)
4 3cxk_A Methionine-R-sulfoxide 100.0 8.4E-47 2.9E-51 276.0 9.3 86 8-93 31-161 (164)
5 3hcj_A MSRB, peptide methionin 100.0 4.1E-46 1.4E-50 270.1 8.7 81 13-93 13-137 (154)
6 2l1u_A MSRB2, methionine-R-sul 100.0 2.3E-46 7.7E-51 268.8 3.5 79 15-93 2-131 (143)
7 3e0m_A Peptide methionine sulf 100.0 5.2E-43 1.8E-47 276.1 9.5 84 10-93 169-297 (313)
8 3mao_A Methionine-R-sulfoxide 100.0 1.3E-30 4.5E-35 179.0 6.5 53 42-94 47-101 (105)
9 2kv1_A Methionine-R-sulfoxide 100.0 4.4E-30 1.5E-34 180.7 6.3 52 42-93 54-107 (124)
10 2kao_A Methionine-R-sulfoxide 100.0 1.2E-29 4.2E-34 178.5 6.0 52 42-93 54-107 (124)
11 3fac_A Putative uncharacterize 63.5 4.3 0.00015 26.2 2.3 30 55-88 67-96 (118)
12 1x6m_A GFA, glutathione-depend 45.8 12 0.0004 26.5 2.3 33 56-88 99-131 (196)
13 1qyp_A RNA polymerase II; tran 33.7 16 0.00056 20.8 1.2 18 50-67 10-27 (57)
14 1ff3_A Peptide methionine sulf 30.5 17 0.00059 26.8 1.2 20 73-92 21-40 (211)
15 2csz_A Synaptotagmin-like prot 30.1 22 0.00075 22.5 1.5 18 55-72 25-42 (76)
16 2a51_A Nucleocapsid protein; s 27.9 27 0.00092 18.4 1.4 19 56-75 1-19 (39)
17 2rps_A Chemokine; peptide, imm 26.1 20 0.00067 19.3 0.6 8 33-40 22-29 (32)
18 2ltm_A NFU1 iron-sulfur cluste 31.5 15 0.0005 24.5 0.0 24 63-93 6-30 (107)
19 1dl6_A Transcription factor II 23.8 36 0.0012 19.8 1.5 23 52-74 27-50 (58)
20 1pft_A TFIIB, PFTFIIBN; N-term 23.5 58 0.002 17.8 2.3 13 54-66 23-35 (50)
21 4f87_A Plycb; lysin, bacteriop 20.4 77 0.0026 19.4 2.5 34 56-89 6-40 (72)
22 4fk7_A Toxin certhrax, putativ 20.2 53 0.0018 22.8 2.1 16 15-30 22-37 (229)
No 1
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=5.6e-48 Score=277.41 Aligned_cols=84 Identities=50% Similarity=0.763 Sum_probs=78.2
Q ss_pred CCCCHHHHHhcCCHHHHHhhhhCCCCCCCCCC-----------------------------------------ceeEE--
Q psy4120 10 CKIDKEELKKRLTPMQYHVTQEKGTERYIGSN-----------------------------------------LLLLI-- 46 (95)
Q Consensus 10 ~~~s~~ewk~~Lt~~qy~Vlr~~gTE~pfsg~-----------------------------------------~v~~~-- 46 (95)
..++++|||++|||+||+|||++||||||||+ +|.++
T Consensus 2 ~~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~~v~~~~D 81 (144)
T 3e0o_A 2 MAYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEEEVEEKLD 81 (144)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTTTEEEEEE
T ss_pred CCCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhccceEEeec
Confidence 35689999999999999999999999999999 45555
Q ss_pred eCCCceEEEEEcCCCCCccccccCCCCCCCCceeeeccceeeeeeCC
Q psy4120 47 TNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 47 ~s~gm~R~Ev~C~~Cg~HLGHVF~DGP~ptg~RyCiNs~sL~F~p~~ 93 (95)
.|+||.||||+|++||+||||||+|||+|||+|||||||||+|+|+.
T Consensus 82 ~s~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~~ 128 (144)
T 3e0o_A 82 TSHGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAALRFVPKH 128 (144)
T ss_dssp CCTTSCEEEEEETTTCCEEEEEESCCSSTTCCEEEECGGGEEEEEHH
T ss_pred CCCCceEEEEEcCCCCCccCCccCCCCCCCCCEeeeceeeEeeeech
Confidence 78999999999999999999999999999999999999999999964
No 2
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=5.6e-48 Score=279.15 Aligned_cols=85 Identities=41% Similarity=0.820 Sum_probs=79.6
Q ss_pred CCCCCHHHHHhcCCHHHHHhhhhCCCCCCCCCC------------------------------------------ceeEE
Q psy4120 9 GCKIDKEELKKRLTPMQYHVTQEKGTERYIGSN------------------------------------------LLLLI 46 (95)
Q Consensus 9 ~~~~s~~ewk~~Lt~~qy~Vlr~~gTE~pfsg~------------------------------------------~v~~~ 46 (95)
.+.++++|||++|||+||+|||++|||+||+|+ +|.++
T Consensus 20 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~~ 99 (151)
T 2k8d_A 20 RIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLR 99 (151)
T ss_dssp CSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEECC
T ss_pred ccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEEe
Confidence 467899999999999999999999999999999 35544
Q ss_pred --eCCCceEEEEEcCCCCCccccccCCCCCCCCceeeeccceeeeeeCC
Q psy4120 47 --TNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 47 --~s~gm~R~Ev~C~~Cg~HLGHVF~DGP~ptg~RyCiNs~sL~F~p~~ 93 (95)
.|+||.||||+|++||+||||||+|||+|||+|||||||||+|+|++
T Consensus 100 ~D~s~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~~ 148 (151)
T 2k8d_A 100 EDRSLGMVRCEVLCARCDAHLGHVFDDGPRPTGKRYCMNSAALKFIPRD 148 (151)
T ss_dssp CCBTTSSCEEEEEETTEEEEEEEEEECSSSSSCEEEEECSTTEEEECSS
T ss_pred eCCCCCceEEEEEeCCCCCcCCcccCCCCCCCCCEEeeceeeecccchH
Confidence 78999999999999999999999999999999999999999999975
No 3
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=4.8e-47 Score=273.05 Aligned_cols=84 Identities=43% Similarity=0.601 Sum_probs=78.0
Q ss_pred CCCCHHHHHhcCCHHHHHhhhhCCCCCCCCCC------------------------------------------ceeEE-
Q psy4120 10 CKIDKEELKKRLTPMQYHVTQEKGTERYIGSN------------------------------------------LLLLI- 46 (95)
Q Consensus 10 ~~~s~~ewk~~Lt~~qy~Vlr~~gTE~pfsg~------------------------------------------~v~~~- 46 (95)
.+++++|||++|||+||+|||++||||||||+ +|.++
T Consensus 3 ~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~ 82 (146)
T 3hcg_A 3 KKPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHD 82 (146)
T ss_dssp CCCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEEE
T ss_pred CCCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEee
Confidence 36899999999999999999999999999999 45554
Q ss_pred -eCCCceEEEEEcCCCCCccccccCCCCC-CCCceeeeccceeeeeeCC
Q psy4120 47 -TNPDMVRTEVTCSKCDAHLGHVFNDGPA-PTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 47 -~s~gm~R~Ev~C~~Cg~HLGHVF~DGP~-ptg~RyCiNs~sL~F~p~~ 93 (95)
.|+||.||||+|++||+||||||+|||+ |||+|||||||||+|+|++
T Consensus 83 D~s~gm~RtEV~C~~Cg~HLGHVF~DGP~~~tg~RyCiNS~sL~F~p~~ 131 (146)
T 3hcg_A 83 DFSYNMRRTEVRSHAADSHLGHVFPDGPRDKGGLRYCINGASLKFIPLE 131 (146)
T ss_dssp EEETTEEEEEEEETTTCCEEEEEESCSCGGGTSCEEEECGGGEEEEEHH
T ss_pred cCCCCcEEEEEEeCCCCCccCceeCCCCCCCCCCEEeeeeEEEEeeehH
Confidence 7899999999999999999999999997 5999999999999999964
No 4
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=8.4e-47 Score=275.96 Aligned_cols=86 Identities=45% Similarity=0.727 Sum_probs=80.3
Q ss_pred CCCCCCHHHHHhcCCHHHHHhhhhCCCCCCCCCC------------------------------------------ceeE
Q psy4120 8 GGCKIDKEELKKRLTPMQYHVTQEKGTERYIGSN------------------------------------------LLLL 45 (95)
Q Consensus 8 ~~~~~s~~ewk~~Lt~~qy~Vlr~~gTE~pfsg~------------------------------------------~v~~ 45 (95)
..++++++|||++|||+||+|||++|||+||+|+ +|.+
T Consensus 31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~ 110 (164)
T 3cxk_A 31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE 110 (164)
T ss_dssp CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence 4567999999999999999999999999999999 3555
Q ss_pred E--eCCCceEEEEEcCCCCCccccccCCCC-CCCCceeeeccceeeeeeCC
Q psy4120 46 I--TNPDMVRTEVTCSKCDAHLGHVFNDGP-APTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 46 ~--~s~gm~R~Ev~C~~Cg~HLGHVF~DGP-~ptg~RyCiNs~sL~F~p~~ 93 (95)
+ .|+||.||||+|++||+||||||+||| +|||+|||||||||+|+|++
T Consensus 111 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~DGP~~ptg~RyCINS~sL~F~p~~ 161 (164)
T 3cxk_A 111 KMDYTHGMTRVEVRCNQCGAHLGHVFEDGPRDKTGLRYCINSAALNFEAKP 161 (164)
T ss_dssp EEECGGGCCEEEEEETTTCCEEEEEESCSCTTTTSCEEEECGGGEEEEECC
T ss_pred eECCCCCcEEEEEEeCCCCCccCcccCCCCCCCCCCEEeeceeeEeeeccc
Confidence 5 789999999999999999999999999 99999999999999999976
No 5
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=4.1e-46 Score=270.11 Aligned_cols=81 Identities=41% Similarity=0.701 Sum_probs=75.9
Q ss_pred CHHHHHhcCCHHHHHhhhhCCCCCCCCCC------------------------------------------ceeEE--eC
Q psy4120 13 DKEELKKRLTPMQYHVTQEKGTERYIGSN------------------------------------------LLLLI--TN 48 (95)
Q Consensus 13 s~~ewk~~Lt~~qy~Vlr~~gTE~pfsg~------------------------------------------~v~~~--~s 48 (95)
..++||++|||+||+|||++|||+||+|+ +|.++ .|
T Consensus 13 ~~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s 92 (154)
T 3hcj_A 13 QRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTS 92 (154)
T ss_dssp HHHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTT
T ss_pred HHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCC
Confidence 46689999999999999999999999999 46655 78
Q ss_pred CCceEEEEEcCCCCCccccccCCCCCCCCceeeeccceeeeeeCC
Q psy4120 49 PDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 49 ~gm~R~Ev~C~~Cg~HLGHVF~DGP~ptg~RyCiNs~sL~F~p~~ 93 (95)
+||.||||+|++||+||||||+|||+|||+||||||+||+|+|+.
T Consensus 93 ~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCiNS~sL~F~p~~ 137 (154)
T 3hcj_A 93 YGMIRTEIVCARCDSHLGHVFPDGPPPTGERHCLNSVSLAFTEDG 137 (154)
T ss_dssp TTTSCEEEEETTTCCEEEEEESCSCTTTTCEEEECGGGEEEEETT
T ss_pred CCceEEEEEeCCCCCccCCccCCCCCCCCCEeeeceeeEEeeeCC
Confidence 999999999999999999999999999999999999999999975
No 6
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=2.3e-46 Score=268.80 Aligned_cols=79 Identities=49% Similarity=0.852 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHhhhhCCCCCCCCCC-------------------------------------c------------eeE
Q psy4120 15 EELKKRLTPMQYHVTQEKGTERYIGSN-------------------------------------L------------LLL 45 (95)
Q Consensus 15 ~ewk~~Lt~~qy~Vlr~~gTE~pfsg~-------------------------------------~------------v~~ 45 (95)
+|||++|||+||+|||++|||+||+|+ . |.+
T Consensus 2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~ 81 (143)
T 2l1u_A 2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR 81 (143)
T ss_dssp CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence 689999999999999999999999999 2 333
Q ss_pred E--eCCCceEEEEEcCCCCCccccccCCCCCCCCceeeeccceeeeeeCC
Q psy4120 46 I--TNPDMVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 46 ~--~s~gm~R~Ev~C~~Cg~HLGHVF~DGP~ptg~RyCiNs~sL~F~p~~ 93 (95)
. .|+||.||||+|++||+||||||+|||+|||+|||||||||+|+|+.
T Consensus 82 ~~D~s~gm~RtEV~C~~Cg~HLGHVF~DGP~ptg~RyCINS~sL~F~p~~ 131 (143)
T 2l1u_A 82 RLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPSK 131 (143)
T ss_dssp EEECTTSSCEEEEEESSSCCCCEEEECCSSCGGGCEEEECCTTEEEEESS
T ss_pred eecccCCceEEEEEECCCCCcCCcccCCCCCCCCCEEEeeeeEEeccchh
Confidence 3 78999999999999999999999999999999999999999999976
No 7
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.2e-43 Score=276.06 Aligned_cols=84 Identities=43% Similarity=0.582 Sum_probs=78.3
Q ss_pred CCCCHHHHHhcCCHHHHHhhhhCCCCCCCCCC------------------------------------------ceeEE-
Q psy4120 10 CKIDKEELKKRLTPMQYHVTQEKGTERYIGSN------------------------------------------LLLLI- 46 (95)
Q Consensus 10 ~~~s~~ewk~~Lt~~qy~Vlr~~gTE~pfsg~------------------------------------------~v~~~- 46 (95)
.++|++|||++|||+||+|||++||||||||+ +|.++
T Consensus 169 ~~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~ 248 (313)
T 3e0m_A 169 EKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHYYK 248 (313)
T ss_dssp CCCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEEEE
T ss_pred ccCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEEee
Confidence 36799999999999999999999999999999 45554
Q ss_pred -eCCCceEEEEEcCCCCCccccccCCCC-CCCCceeeeccceeeeeeCC
Q psy4120 47 -TNPDMVRTEVTCSKCDAHLGHVFNDGP-APTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 47 -~s~gm~R~Ev~C~~Cg~HLGHVF~DGP-~ptg~RyCiNs~sL~F~p~~ 93 (95)
.|+||.||||+|++||+||||||+||| +|||+||||||+||+|+|+.
T Consensus 249 D~s~gm~RtEv~c~~c~~HLGHVF~DGp~~ptg~RyCiNs~sL~F~p~~ 297 (313)
T 3e0m_A 249 DLSHGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAKD 297 (313)
T ss_dssp ECCTTCCEEEEEESSSCCEEEEEESCSCTTTTSCEEEECGGGEEEEEHH
T ss_pred cCCCCcEEEEEECCCCCCccCcccCCCCCCCCCCEEeeceeeEeeeccc
Confidence 789999999999999999999999999 79999999999999999964
No 8
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=99.96 E-value=1.3e-30 Score=178.98 Aligned_cols=53 Identities=40% Similarity=0.683 Sum_probs=47.3
Q ss_pred ceeEE-eCCCceEEEEEcCCCCCcccccc-CCCCCCCCceeeeccceeeeeeCCC
Q psy4120 42 LLLLI-TNPDMVRTEVTCSKCDAHLGHVF-NDGPAPTRRRFCINSASVDFVPDHP 94 (95)
Q Consensus 42 ~v~~~-~s~gm~R~Ev~C~~Cg~HLGHVF-~DGP~ptg~RyCiNs~sL~F~p~~~ 94 (95)
+|.++ ...+|.||||+|++||+|||||| +|||+|||+||||||+||+|+|+..
T Consensus 47 ~v~~~~D~~~~~RtEV~C~~C~~HLGHVF~~DGP~ptg~RyCiNS~sL~F~p~~~ 101 (105)
T 3mao_A 47 SVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQSRFSIFSSSLKFVPKGK 101 (105)
T ss_dssp SEEEEECTTSTTEEEEEETTTCCEEEEEETTCSSSTTCCEEEECGGGEEEEETTC
T ss_pred ceEEEecCCCCCEEEEEeCCCCCccCcccCCCCcCCCCCEEeeCeeeEEeeeccc
Confidence 56666 33479999999999999999999 7999999999999999999999863
No 9
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=99.96 E-value=4.4e-30 Score=180.70 Aligned_cols=52 Identities=40% Similarity=0.717 Sum_probs=47.2
Q ss_pred ceeEE-eCCCceEEEEEcCCCCCcccccc-CCCCCCCCceeeeccceeeeeeCC
Q psy4120 42 LLLLI-TNPDMVRTEVTCSKCDAHLGHVF-NDGPAPTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 42 ~v~~~-~s~gm~R~Ev~C~~Cg~HLGHVF-~DGP~ptg~RyCiNs~sL~F~p~~ 93 (95)
+|.+. .+.+|.||||+|++||+|||||| +|||+|||+|||||||||+|+|+.
T Consensus 54 ~v~~~~d~~~~~r~Ev~C~~Cg~HLGHVF~~DGP~ptg~RyCINS~sL~F~p~~ 107 (124)
T 2kv1_A 54 SVTKCPEKNRPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFCIFSSSLKFVPKG 107 (124)
T ss_dssp SCEEEECSSSTTCEEEECTTTTCCCEEECTTSCTTTTCSCEECCTTTEEEEECS
T ss_pred eEEEEeccCCceEEEEEEecCCCccCCccCCCCCCCCCCEEeecceeeEeEECc
Confidence 45554 66688899999999999999999 899999999999999999999976
No 10
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=99.96 E-value=1.2e-29 Score=178.45 Aligned_cols=52 Identities=40% Similarity=0.717 Sum_probs=46.7
Q ss_pred ceeEE-eCCCceEEEEEcCCCCCcccccc-CCCCCCCCceeeeccceeeeeeCC
Q psy4120 42 LLLLI-TNPDMVRTEVTCSKCDAHLGHVF-NDGPAPTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 42 ~v~~~-~s~gm~R~Ev~C~~Cg~HLGHVF-~DGP~ptg~RyCiNs~sL~F~p~~ 93 (95)
+|++. ...+|.||||+|++||+|||||| +|||+|||+|||||||||+|+|++
T Consensus 54 ~v~~~~D~~~~~RtEV~C~~Cg~HLGHVF~~DGP~ptg~RyCINS~sL~F~p~~ 107 (124)
T 2kao_A 54 SVTKCPEKNRPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFCIFSSSLKFVPKG 107 (124)
T ss_dssp SCEEEECSSCTTCEEEECTTTTCCCEEECCSSCSSSSCCCEECCSSSEEEECCS
T ss_pred ceEEEecCCCCCEEEEEeCCCCCcCCccCCCCCcCCCCCEeeeCeEEEEeeccc
Confidence 56655 33479999999999999999999 799999999999999999999986
No 11
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=63.49 E-value=4.3 Score=26.17 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEcCCCCCccccccCCCCCCCCceeeeccceee
Q psy4120 55 EVTCSKCDAHLGHVFNDGPAPTRRRFCINSASVD 88 (95)
Q Consensus 55 Ev~C~~Cg~HLGHVF~DGP~ptg~RyCiNs~sL~ 88 (95)
-..|+.||++|-+...+.| ..+=||..+|+
T Consensus 67 r~FC~~CGs~l~~~~~~~~----~~~~V~~g~ld 96 (118)
T 3fac_A 67 HWFCRTCGIYTHHQRRSNP----EEYGVNVAILE 96 (118)
T ss_dssp EEEETTTCCEEEEECSSCT----TEEEEEGGGBT
T ss_pred eEECCCCCccccCccCCCC----CEEEEEecccC
Confidence 3689999999977665544 35668877774
No 12
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=45.77 E-value=12 Score=26.47 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=20.7
Q ss_pred EEcCCCCCccccccCCCCCCCCceeeeccceee
Q psy4120 56 VTCSKCDAHLGHVFNDGPAPTRRRFCINSASVD 88 (95)
Q Consensus 56 v~C~~Cg~HLGHVF~DGP~ptg~RyCiNs~sL~ 88 (95)
..|+.||++|-+...+.+.|....+=|+...|+
T Consensus 99 ~FC~~CGs~l~~~~~~~~~~~~~~~~V~~g~lD 131 (196)
T 1x6m_A 99 HRCRDCGVHMYGRIENRDHPFYGLDFVHTELSD 131 (196)
T ss_dssp EEETTTCCEEEEEECCTTSTTTTEEEECGGGBS
T ss_pred EECCCCCCcCCcccccCCCCccceEEEEEeccC
Confidence 689999999977766543332223445555443
No 13
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=33.66 E-value=16 Score=20.85 Aligned_cols=18 Identities=28% Similarity=0.628 Sum_probs=13.3
Q ss_pred CceEEEEEcCCCCCcccc
Q psy4120 50 DMVRTEVTCSKCDAHLGH 67 (95)
Q Consensus 50 gm~R~Ev~C~~Cg~HLGH 67 (95)
...++++.|.+||.+---
T Consensus 10 ~~~~~~~~Cp~Cg~~~~~ 27 (57)
T 1qyp_A 10 TLPTTKITCPKCGNDTAY 27 (57)
T ss_dssp SSCEEECCCTTTCCSEEE
T ss_pred cCCceEeECCCCCCCEEE
Confidence 445779999999975443
No 14
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=30.45 E-value=17 Score=26.81 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=16.4
Q ss_pred CCCCCceeeeccceeeeeeC
Q psy4120 73 PAPTRRRFCINSASVDFVPD 92 (95)
Q Consensus 73 P~ptg~RyCiNs~sL~F~p~ 92 (95)
|.+...|||+|+.+|.+.|.
T Consensus 21 ~~~~~~~h~v~~~~~~~~~~ 40 (211)
T 1ff3_A 21 PMPVATLHAVNGHSMTNVPD 40 (211)
T ss_dssp CCCCCSBCTTTCCBSSCCCT
T ss_pred CCCCCccccccCCCcccCCC
Confidence 55667899999999998664
No 15
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.15 E-value=22 Score=22.46 Aligned_cols=18 Identities=28% Similarity=0.730 Sum_probs=15.3
Q ss_pred EEEcCCCCCccccccCCC
Q psy4120 55 EVTCSKCDAHLGHVFNDG 72 (95)
Q Consensus 55 Ev~C~~Cg~HLGHVF~DG 72 (95)
|-.|++|+.-||-+|+-|
T Consensus 25 ~r~CarC~~~LG~l~~~g 42 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKT 42 (76)
T ss_dssp CCBCSSSCCBCSSSCTTT
T ss_pred ccchhhhCccccccccCC
Confidence 348999999999998765
No 16
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=27.93 E-value=27 Score=18.37 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=12.2
Q ss_pred EEcCCCCCccccccCCCCCC
Q psy4120 56 VTCSKCDAHLGHVFNDGPAP 75 (95)
Q Consensus 56 v~C~~Cg~HLGHVF~DGP~p 75 (95)
|.|-+|+. .||+-.|=|.|
T Consensus 1 i~C~~Cg~-~GH~a~~C~~~ 19 (39)
T 2a51_A 1 LTCFNCGK-PGHTARMCRQP 19 (39)
T ss_dssp CBCTTTCC-BSSCTTTCCSC
T ss_pred CeeeccCC-CCcccccCCCC
Confidence 35677754 67777766655
No 17
>2rps_A Chemokine; peptide, immune system; NMR {Pseudaletia separata}
Probab=26.14 E-value=20 Score=19.35 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=6.4
Q ss_pred CCCCCCCC
Q psy4120 33 GTERYIGS 40 (95)
Q Consensus 33 gTE~pfsg 40 (95)
-|||||..
T Consensus 22 TTEpPFd~ 29 (32)
T 2rps_A 22 TTEPPFDP 29 (32)
T ss_dssp SCCCCCCC
T ss_pred CcCCCCCc
Confidence 58999974
No 18
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=31.51 E-value=15 Score=24.45 Aligned_cols=24 Identities=33% Similarity=0.726 Sum_probs=16.8
Q ss_pred Ccccccc-CCCCCCCCceeeeccceeeeeeCC
Q psy4120 63 AHLGHVF-NDGPAPTRRRFCINSASVDFVPDH 93 (95)
Q Consensus 63 ~HLGHVF-~DGP~ptg~RyCiNs~sL~F~p~~ 93 (95)
-|..|.| .-.++| |-.+|+|+|..
T Consensus 6 ~~~~~~~~qtE~TP-------NPntLKF~p~~ 30 (107)
T 2ltm_A 6 HHHSHMFIQTQDTP-------NPNSLKFIPGK 30 (107)
Confidence 3667788 345666 78888888753
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.77 E-value=36 Score=19.79 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=15.6
Q ss_pred eEEEEEcCCCCCccc-cccCCCCC
Q psy4120 52 VRTEVTCSKCDAHLG-HVFNDGPA 74 (95)
Q Consensus 52 ~R~Ev~C~~Cg~HLG-HVF~DGP~ 74 (95)
.+-|+.|..||.=|+ ++.+.||.
T Consensus 27 ~~ge~vC~~CGlVl~e~~iD~gpE 50 (58)
T 1dl6_A 27 RAGDMICPECGLVVGDRVIDVGSE 50 (58)
T ss_dssp SSCCEECTTTCCEECCSCCCCCCS
T ss_pred CCCeEEeCCCCCEEeccccccCCc
Confidence 355799999977665 45555653
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.54 E-value=58 Score=17.77 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=9.0
Q ss_pred EEEEcCCCCCccc
Q psy4120 54 TEVTCSKCDAHLG 66 (95)
Q Consensus 54 ~Ev~C~~Cg~HLG 66 (95)
-|+.|..||.=+.
T Consensus 23 gelvC~~CG~v~~ 35 (50)
T 1pft_A 23 GEIVCAKCGYVIE 35 (50)
T ss_dssp TEEEESSSCCBCC
T ss_pred CeEECcccCCccc
Confidence 4789999954443
No 21
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=20.37 E-value=77 Score=19.45 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=22.9
Q ss_pred EEcCCCCCcccccc-CCCCCCCCceeeeccceeee
Q psy4120 56 VTCSKCDAHLGHVF-NDGPAPTRRRFCINSASVDF 89 (95)
Q Consensus 56 v~C~~Cg~HLGHVF-~DGP~ptg~RyCiNs~sL~F 89 (95)
|.--+-.+-.|-+| .||-...|-|--||++-+-.
T Consensus 6 vnvenvsgvqgflfhtdgkesygyrafingveigi 40 (72)
T 4f87_A 6 VNVENVSGVQGFLFHTDGKESYGYRAFINGVEIGI 40 (72)
T ss_dssp -----CCSCCEEEEECCSSSCCCEEEEETTEEEEE
T ss_pred eeeeecccceEEEEecCCccccchhheecceEecc
Confidence 33344455677888 58988899999999987643
No 22
>4fk7_A Toxin certhrax, putative ADP-ribosyltransferase certhrax; mono-ADP-ribosyltransferase; HET: P34; 1.78A {Bacillus cereus}
Probab=20.23 E-value=53 Score=22.76 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHhhh
Q psy4120 15 EELKKRLTPMQYHVTQ 30 (95)
Q Consensus 15 ~ewk~~Lt~~qy~Vlr 30 (95)
+.|++.||++|..-++
T Consensus 22 ~~w~~~Lt~~E~~AI~ 37 (229)
T 4fk7_A 22 KNWKENLTISEKDIIT 37 (229)
T ss_dssp HHHHHTSCHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHH
Confidence 4588999999976544
Done!