RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4120
         (95 letters)



>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase
           MsrB {Bacillus subtilis [TaxId: 1423]}
          Length = 143

 Score =  100 bits (250), Expect = 2e-29
 Identities = 41/124 (33%), Positives = 49/124 (39%), Gaps = 43/124 (34%)

Query: 11  KIDKEELKKRLTPMQYHVTQEKGTER---------------------------------- 36
             +KEE  K L  MQY VTQ  GTE                                   
Sbjct: 2   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 61

Query: 37  -----YIGSNLLLLITNPD----MVRTEVTCSKCDAHLGHVFNDGPAPTRRRFCINSASV 87
                +       +    D    M+RTEV     D+HLGHVFNDGP P   R+CINSA++
Sbjct: 62  CGWPSFTKPIEEEVEEKLDTSHGMIRTEVRSRTADSHLGHVFNDGPGPNGLRYCINSAAL 121

Query: 88  DFVP 91
            FVP
Sbjct: 122 RFVP 125


>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine
           sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId:
           485]}
          Length = 144

 Score = 90.5 bits (224), Expect = 2e-25
 Identities = 39/127 (30%), Positives = 44/127 (34%), Gaps = 45/127 (35%)

Query: 11  KIDKEELKKRLTPMQYHVTQEKGTER------------------------------YIGS 40
           K    ELK+ LT  QY VTQ   TE                               Y   
Sbjct: 3   KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSG 62

Query: 41  NLLLLITNPD--------------MVRTEVTCSKCDAHLGHVFNDGPAPTR-RRFCINSA 85
                 T P               M RTEV     D+HLGHVF DGP      R+CIN A
Sbjct: 63  CGWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAADSHLGHVFPDGPRDKGGLRYCINGA 122

Query: 86  SVDFVPD 92
           S+ F+P 
Sbjct: 123 SLKFIPL 129


>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens),
          s100a4 [TaxId: 9606]}
          Length = 93

 Score = 26.0 bits (57), Expect = 0.49
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 1  MCDNNNAGGCKIDKEELKKRLTPMQYHVTQEKGTERYI 38
                    K++K ELK+ LT        ++  E   
Sbjct: 17 KYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAF 54


>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 25.3 bits (56), Expect = 0.67
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 37 YIGSNLLLLITNPD 50
          YIG NL LL+  PD
Sbjct: 19 YIGENLQLLVDRPD 32


>d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL)
          {Caenorhabditis elegans [TaxId: 6239]}
          Length = 119

 Score = 23.2 bits (50), Expect = 4.8
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 45 LITN--PDMVRTEVTCSKCDAHLGHVFNDGPAPTRRR 79
          L  +   +  R E+       +L   F   P  T  R
Sbjct: 27 LEVDGHGEASRVELHGRDFKPNLKVWFGATPVETTFR 63


>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId:
          9913]}
          Length = 76

 Score = 23.0 bits (49), Expect = 4.9
 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 3  DNNNAGGCKIDKEELKKRLTPMQYHVTQEK 32
             +    +I KEELK  +  +   + +  
Sbjct: 17 KEGDPN--QISKEELKLVMQTLGPSLLKGM 44


>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
          calgranulin C, s100a12 [TaxId: 9606]}
          Length = 87

 Score = 22.8 bits (49), Expect = 6.0
 Identities = 10/48 (20%), Positives = 15/48 (31%)

Query: 3  DNNNAGGCKIDKEELKKRLTPMQYHVTQEKGTERYIGSNLLLLITNPD 50
                   + K ELK+ LT    +  +    +  I      L  N D
Sbjct: 18 SVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQD 65


>d1w7jb1 a.39.1.5 (B:11-149) Myosin Essential Chain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 139

 Score = 23.4 bits (49), Expect = 6.1
 Identities = 5/31 (16%), Positives = 10/31 (32%), Gaps = 2/31 (6%)

Query: 1  MCDNNNAGGCKIDKEELKKRLTPMQYHVTQE 31
          + D    G  KI   +    +  +  + T  
Sbjct: 8  LFDRVGDG--KILYSQCGDVMRALGQNPTNA 36


>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
          s100a3 [TaxId: 9606]}
          Length = 93

 Score = 22.5 bits (48), Expect = 8.0
 Identities = 11/43 (25%), Positives = 17/43 (39%)

Query: 8  GGCKIDKEELKKRLTPMQYHVTQEKGTERYIGSNLLLLITNPD 50
             K+ + ELK+ L       T  +  E      + +L TN D
Sbjct: 24 DKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKD 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 371,060
Number of extensions: 14699
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 17
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)