Query psy4121
Match_columns 634
No_of_seqs 5 out of 7
Neff 1.2
Searched_HMMs 46136
Date Fri Aug 16 17:30:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05142 DUF702: Domain of unk 17.0 1.3E+02 0.0028 28.6 3.0 12 11-22 30-41 (154)
2 COG1326 Uncharacterized archae 14.0 1.7E+02 0.0036 29.0 3.0 63 13-75 7-84 (201)
3 PF15221 LEP503: Lens epitheli 12.8 83 0.0018 26.4 0.5 19 51-69 5-23 (61)
4 TIGR01623 put_zinc_LRP1 putati 9.4 1.2E+02 0.0026 24.1 0.3 12 12-23 26-37 (43)
5 cd00291 SirA_YedF_YeeD SirA, Y 7.8 71 0.0015 23.6 -1.5 44 11-60 5-48 (69)
6 KOG3550|consensus 7.4 3E+02 0.0066 27.0 2.2 36 46-85 112-147 (207)
7 KOG4451|consensus 7.3 1.7E+02 0.0036 30.1 0.4 47 5-55 222-269 (286)
8 PF06678 DUF1179: Protein of u 7.1 3.8E+02 0.0083 24.4 2.5 32 31-62 56-88 (103)
9 KOG3301|consensus 6.6 2.4E+02 0.0053 27.6 1.1 29 15-43 134-162 (183)
10 KOG0852|consensus 6.2 1.7E+02 0.0037 29.0 -0.2 53 7-59 41-106 (196)
No 1
>PF05142 DUF702: Domain of unknown function (DUF702) ; InterPro: IPR007818 This is a family of plant proteins of unknown function.
Probab=17.01 E-value=1.3e+02 Score=28.64 Aligned_cols=12 Identities=58% Similarity=1.060 Sum_probs=9.7
Q ss_pred ccccCCcchhcc
Q psy4121 11 RRAKCPTHVRKT 22 (634)
Q Consensus 11 rrakcpthvrkt 22 (634)
|-..|||||+.|
T Consensus 30 rg~~C~tHvksT 41 (154)
T PF05142_consen 30 RGFDCPTHVKST 41 (154)
T ss_pred CCCCCccceecc
Confidence 446799999887
No 2
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=14.04 E-value=1.7e+02 Score=29.01 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=40.2
Q ss_pred ccCCcch-hccccccccccCCCCCCCCCcccccccc--------------CCCCcccccccccCCCCccccceeEEEe
Q psy4121 13 AKCPTHV-RKTSESLIKFRQPSPLAEGSSAHTNFTQ--------------SSPEYPLLMRIKSAPGGNRTRGLALTRQ 75 (634)
Q Consensus 13 akcpthv-rktseslikfrqpsplAEG~Ss~T~F~~--------------ns~E~Pv~s~LKSsPGGNRTdG~~LTr~ 75 (634)
+.||+-- -.++..+||++-++||.+=-+--|.|.. |..+.+.--++.--|+=.+.-|=.|...
T Consensus 7 ~~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~V~~~~i~~~k~~~v~viVS~~~~S~~~~vel~~gE~l~vGDei~vd 84 (201)
T COG1326 7 IECPSCGSEEVSHEVIKERGREPLVRCEECGTVHPAIIKTPKPVRVRVIVSRHEESFTKEVELDPGETLKVGDEIEVD 84 (201)
T ss_pred EECCCCCcchhhHHHHHhcCCceEEEccCCCcEeeceeeccccceEEEEEecCCcccceeEecCCCCeEecCCEEEEc
Confidence 4688876 5666789999999999988877777733 3444444444444455444444444433
No 3
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=12.85 E-value=83 Score=26.35 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=16.5
Q ss_pred CcccccccccCCCCccccc
Q psy4121 51 EYPLLMRIKSAPGGNRTRG 69 (634)
Q Consensus 51 E~Pv~s~LKSsPGGNRTdG 69 (634)
.+||+..||+||++++-|-
T Consensus 5 tqPLaqalPfs~~~~l~dt 23 (61)
T PF15221_consen 5 TQPLAQALPFSLGRALRDT 23 (61)
T ss_pred CCchhhhCCcccccccccc
Confidence 4899999999999998763
No 4
>TIGR01623 put_zinc_LRP1 putative zinc finger domain, LRP1 type. This model represents a putative zinc finger domain found in plants. Arabidopsis thaliana has at least 10 distinct members. Proteins containing this domain, including LRP1, generally share the same size, about 300 amino acids, and architecture. This 43-residue domain, and a more C-terminal companion domain of similar size, appear as tightly conserved islands of sequence similarity. The remainder consists largely of low-complexity sequence. Several animal proteins have regions with matching patterns of Cys, Gly, and His residues. These are not included in the model but score between trusted and noise cutoffs.
Probab=9.40 E-value=1.2e+02 Score=24.06 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=9.4
Q ss_pred cccCCcchhccc
Q psy4121 12 RAKCPTHVRKTS 23 (634)
Q Consensus 12 rakcpthvrkts 23 (634)
-..|||||+-|-
T Consensus 26 ~~DC~tHv~stw 37 (43)
T TIGR01623 26 GFHCVTHVKSTW 37 (43)
T ss_pred CcCCcchhcccc
Confidence 347999999774
No 5
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=7.82 E-value=71 Score=23.64 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=32.0
Q ss_pred ccccCCcchhccccccccccCCCCCCCCCccccccccCCCCccccccccc
Q psy4121 11 RRAKCPTHVRKTSESLIKFRQPSPLAEGSSAHTNFTQSSPEYPLLMRIKS 60 (634)
Q Consensus 11 rrakcpthvrktseslikfrqpsplAEG~Ss~T~F~~ns~E~Pv~s~LKS 60 (634)
|-..||..+-++...|-+ ++.|+.-.-++...+....++.++++
T Consensus 5 rg~~CP~Pl~~~~~~l~~------l~~g~~l~v~~d~~~~~~~i~~~~~~ 48 (69)
T cd00291 5 RGLPCPLPVLKTKKALEK------LKSGEVLEVLLDDPGAVEDIPAWAKE 48 (69)
T ss_pred cCCcCCHHHHHHHHHHhc------CCCCCEEEEEecCCcHHHHHHHHHHH
Confidence 456899998888877654 56677666666666667788888775
No 6
>KOG3550|consensus
Probab=7.37 E-value=3e+02 Score=27.05 Aligned_cols=36 Identities=39% Similarity=0.496 Sum_probs=28.2
Q ss_pred ccCCCCcccccccccCCCCccccceeEEEeeeEEeeCcEE
Q psy4121 46 TQSSPEYPLLMRIKSAPGGNRTRGLALTRQTHYQLKGGVR 85 (634)
Q Consensus 46 ~~ns~E~Pv~s~LKSsPGGNRTdG~~LTr~g~~~~~GGvr 85 (634)
+||||-|- |+| ||||--.+-.-|+|+-.|++.-|+-
T Consensus 112 eqnspiyi--sri--ipggvadrhgglkrgdqllsvngvs 147 (207)
T KOG3550|consen 112 EQNSPIYI--SRI--IPGGVADRHGGLKRGDQLLSVNGVS 147 (207)
T ss_pred ccCCceEE--Eee--cCCccccccCcccccceeEeeccee
Confidence 56887763 443 8999999999999988888887753
No 7
>KOG4451|consensus
Probab=7.35 E-value=1.7e+02 Score=30.10 Aligned_cols=47 Identities=30% Similarity=0.403 Sum_probs=34.6
Q ss_pred CCCcccccccCCcchhcccccccccc-CCCCCCCCCccccccccCCCCcccc
Q psy4121 5 VPYQSDRRAKCPTHVRKTSESLIKFR-QPSPLAEGSSAHTNFTQSSPEYPLL 55 (634)
Q Consensus 5 vpyqsdrrakcpthvrktseslikfr-qpsplAEG~Ss~T~F~~ns~E~Pv~ 55 (634)
-|-|+||...-|...|-+ -.|| ||+|..-=-|-|.+..-|||--||-
T Consensus 222 ~~~~v~r~Q~~~~~~~~~----psFrqqpppMK~ClsChqqIHRNAPiCPlC 269 (286)
T KOG4451|consen 222 SGSQVDRPQNLINRHRMP----PSFRQQPPPMKVCLSCHQQIHRNAPICPLC 269 (286)
T ss_pred CCCcccchhhcccccCCC----cchhcCCCcchHHHHHHHHHhcCCCCCcch
Confidence 355667666555433333 2588 8999988889999999999999984
No 8
>PF06678 DUF1179: Protein of unknown function (DUF1179); InterPro: IPR009564 This family consists of several hypothetical Caenorhabditis elegans proteins of around 106 residues in length. The function of the family is unknown.
Probab=7.05 E-value=3.8e+02 Score=24.35 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=19.3
Q ss_pred CCCCCCCCCcccccccc-CCCCcccccccccCC
Q psy4121 31 QPSPLAEGSSAHTNFTQ-SSPEYPLLMRIKSAP 62 (634)
Q Consensus 31 qpsplAEG~Ss~T~F~~-ns~E~Pv~s~LKSsP 62 (634)
|-+|.+----++|..+- ...+-+-|||++|+|
T Consensus 56 ~~~P~sQ~PP~~~Pie~s~~~~EdTLANVkSlp 88 (103)
T PF06678_consen 56 VHCPTSQTPPARTPIERSGKSAEDTLANVKSLP 88 (103)
T ss_pred ccCccccCCCCCCcccccccchhhHHhhhhcCC
Confidence 34455555555665543 223356699999987
No 9
>KOG3301|consensus
Probab=6.61 E-value=2.4e+02 Score=27.65 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCcchhccccccccccCCCCCCCCCcccc
Q psy4121 15 CPTHVRKTSESLIKFRQPSPLAEGSSAHT 43 (634)
Q Consensus 15 cpthvrktseslikfrqpsplAEG~Ss~T 43 (634)
|.-.||-.|+.+|.|..|||+..+...++
T Consensus 134 Psf~vrldsqk~iD~s~~s~~g~~~pg~~ 162 (183)
T KOG3301|consen 134 PSFMVRLDSQKHIDFSLPSPYGGARPGRV 162 (183)
T ss_pred cceeEeechhhhccccccccCCCCCcchh
Confidence 44456777899999999999988877665
No 10
>KOG0852|consensus
Probab=6.24 E-value=1.7e+02 Score=28.95 Aligned_cols=53 Identities=26% Similarity=0.407 Sum_probs=39.6
Q ss_pred CcccccccCCcchhccccccccccCCCCCCCCCcccccccc-------------CCCCcccccccc
Q psy4121 7 YQSDRRAKCPTHVRKTSESLIKFRQPSPLAEGSSAHTNFTQ-------------SSPEYPLLMRIK 59 (634)
Q Consensus 7 yqsdrrakcpthvrktseslikfrqpsplAEG~Ss~T~F~~-------------ns~E~Pv~s~LK 59 (634)
|.-|--.-||||+--.|+..-.|+.-..--=|-|.-+.|+. ....+||+|-++
T Consensus 41 yplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~ 106 (196)
T KOG0852|consen 41 YPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLN 106 (196)
T ss_pred cCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccc
Confidence 55677889999999999988888876655556666666765 345578877665
Done!