Query psy4121
Match_columns 634
No_of_seqs 5 out of 7
Neff 1.2
Searched_HMMs 29240
Date Fri Aug 16 17:30:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i2d_A E3 SUMO-protein ligase 15.7 69 0.0023 32.0 2.4 22 14-35 29-50 (371)
2 2b82_A APHA, class B acid phos 9.9 86 0.0029 26.5 0.9 21 31-51 1-21 (211)
3 3umc_A Haloacid dehalogenase; 8.2 92 0.0032 24.7 0.4 22 38-59 2-23 (254)
4 2hpw_A Green fluorescent prote 6.3 3.8E+02 0.013 25.4 3.6 53 31-87 56-120 (233)
5 3u5c_T 40S ribosomal protein S 6.2 1.1E+02 0.0039 27.2 0.0 18 11-28 85-102 (144)
6 1dab_A P.69 pertactin; pertuss 5.9 6.9E+02 0.024 25.7 5.5 57 68-126 43-100 (539)
7 2yew_B E1 envelope glycoprotei 4.8 3.1E+02 0.011 28.3 2.1 14 5-18 312-325 (427)
8 3f59_A Ankyrin-1; beta sandwic 4.7 2.8E+02 0.0096 25.2 1.6 49 14-62 35-90 (161)
9 3j0f_E E1 envelope glycoprotei 4.6 2.2E+02 0.0076 29.4 0.9 18 4-21 317-334 (439)
10 1pav_A Hypothetical protein TA 4.5 1.1E+02 0.0037 22.8 -1.1 44 11-60 12-55 (78)
No 1
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=15.72 E-value=69 Score=32.01 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=0.4
Q ss_pred cCCcchhccccccccccCCCCC
Q psy4121 14 KCPTHVRKTSESLIKFRQPSPL 35 (634)
Q Consensus 14 kcpthvrktseslikfrqpspl 35 (634)
..|||-||||...-.-|.|.|.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~ 50 (371)
T 3i2d_A 29 QSPTQRRKTSTTSSTSRAPPPT 50 (371)
T ss_dssp ---------------------C
T ss_pred cCcccccccccccccccCCCCC
Confidence 4699999999877777766553
No 2
>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A
Probab=9.91 E-value=86 Score=26.47 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=17.8
Q ss_pred CCCCCCCCCccccccccCCCC
Q psy4121 31 QPSPLAEGSSAHTNFTQSSPE 51 (634)
Q Consensus 31 qpsplAEG~Ss~T~F~~ns~E 51 (634)
.||||..|...+.+|++-++-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (211)
T 2b82_A 1 SPSPLNPGTNVARLAEQAPIH 21 (211)
T ss_dssp CCCCSSCCCCHHHHHCCCCCE
T ss_pred CCCCCCCCchHHHHhhcCCcc
Confidence 499999999999999995443
No 3
>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}
Probab=8.25 E-value=92 Score=24.67 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=4.5
Q ss_pred CCccccccccCCCCcccccccc
Q psy4121 38 GSSAHTNFTQSSPEYPLLMRIK 59 (634)
Q Consensus 38 G~Ss~T~F~~ns~E~Pv~s~LK 59 (634)
|||+|++-..|.+..+.+|.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~m~ik 23 (254)
T 3umc_A 2 GSSHHHHHHSSGRENLYFQGMR 23 (254)
T ss_dssp ---------------CCSSSCC
T ss_pred CccccccccccCCCcccccCCc
Confidence 5777777767777777777554
No 4
>2hpw_A Green fluorescent protein; GFP, structural genomics, PSI, protein initiative; HET: CSY; 1.55A {Clytia gregaria}
Probab=6.35 E-value=3.8e+02 Score=25.40 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCCCCCCCCccccccccCCCCcccccc----ccc-CCCC-------ccccceeEEEeeeEEeeCcEEEe
Q psy4121 31 QPSPLAEGSSAHTNFTQSSPEYPLLMR----IKS-APGG-------NRTRGLALTRQTHYQLKGGVRED 87 (634)
Q Consensus 31 qpsplAEG~Ss~T~F~~ns~E~Pv~s~----LKS-sPGG-------NRTdG~~LTr~g~~~~~GGvreD 87 (634)
-|-|.|- -.|.| +|-.=-+-|.. .|+ .|+| +-+||+++|..-.+++.|..+.-
T Consensus 56 gPLPFs~---Ls~~f-G~r~F~kYP~~i~DyFK~sfpeGysweRt~~fEDGGv~t~~~~itleg~~~~~ 120 (233)
T 2hpw_A 56 LPVPWAT---ILSSL-XVFCFAKYPRHIADFFKSTQPDGYSQDRIISFDNDGQYDVKAKVTYENGTLYN 120 (233)
T ss_dssp CSSCHHH---HTTTC--CGGGSBCCTTSCCHHHHTTTTCEEEEEEEEETTSCEEEEEEEEEEETTEEEE
T ss_pred ccCCchh---hhhhh-hhhccccCCcccchHHHhcCCCceeEEEEEEEcCCcEEEEEEEEEEECCEEEE
Confidence 4666666 34455 65544344333 333 4577 35788888888888888776543
No 5
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=6.19 E-value=1.1e+02 Score=27.24 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=11.5
Q ss_pred ccccCCcchhcccccccc
Q psy4121 11 RRAKCPTHVRKTSESLIK 28 (634)
Q Consensus 11 rrakcpthvrktseslik 28 (634)
||-.+|.|..+.|-|+|.
T Consensus 85 rrG~~P~h~~~asg~iiR 102 (144)
T 3u5c_T 85 SRGVRPYKHIDASGSINR 102 (144)
T ss_dssp EETTEEEEECCCCHHHHH
T ss_pred CCCCCCccccccCcHHHH
Confidence 455567777777766654
No 6
>1dab_A P.69 pertactin; pertussis beta helix, cell adhesion; 2.50A {Bordetella pertussis} SCOP: b.80.1.7 PDB: 2iou_G
Probab=5.88 E-value=6.9e+02 Score=25.72 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=39.8
Q ss_pred cceeEEEee-eEEeeCcEEEecCceEEecCceEeecCceEEcCCceEeecCCeeecCCce
Q psy4121 68 RGLALTRQT-HYQLKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGV 126 (634)
Q Consensus 68 dG~~LTr~g-~~~~~GGvreDSGgV~v~~GGvreD~G~V~vt~GGVreDSGgL~~~~GG~ 126 (634)
-|+-|--.+ .+++..+.++++|.+ ...++.+-.|+|+...|.+..++++|.++.-..
T Consensus 43 ~Gv~~~~~~~~~~~~n~~i~t~G~~--~~~~~~~~~gt~~~~~g~~~~~~~~~~~~~~~~ 100 (539)
T 1dab_A 43 QGILLENPAAELQFRNGSVTSSGQL--SDDGIRRFLGTVTVKAGKLVADHATLANVGDTW 100 (539)
T ss_dssp CSEEEEEEEEEEEEESCEEEECSCC--BCSSSSCBCCSEEEEEEEEEEESCEEEECSCTT
T ss_pred eEEEEeCCCcEEEEecceEEecccc--cccceeecCceEEEeCCeeeeccceeeeeeecc
Confidence 444444333 455666677777663 346788999999998888888999998865543
No 7
>2yew_B E1 envelope glycoprotein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus}
Probab=4.75 E-value=3.1e+02 Score=28.28 Aligned_cols=14 Identities=29% Similarity=0.740 Sum_probs=12.8
Q ss_pred CCCcccccccCCcc
Q psy4121 5 VPYQSDRRAKCPTH 18 (634)
Q Consensus 5 vpyqsdrrakcpth 18 (634)
+-|.+|+.-|||+|
T Consensus 312 l~Y~~~k~GkCaVH 325 (427)
T 2yew_B 312 ISYTSNKVGKCAIS 325 (427)
T ss_dssp EEEECCCCBCCCCC
T ss_pred EEEecCCCccCccc
Confidence 56899999999999
No 8
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=4.69 E-value=2.8e+02 Score=25.16 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=29.9
Q ss_pred cCCcchhcccccccccc--CCCCCCCCCcccccccc-----CCCCcccccccccCC
Q psy4121 14 KCPTHVRKTSESLIKFR--QPSPLAEGSSAHTNFTQ-----SSPEYPLLMRIKSAP 62 (634)
Q Consensus 14 kcpthvrktseslikfr--qpsplAEG~Ss~T~F~~-----ns~E~Pv~s~LKSsP 62 (634)
.|++-+|-|...+-.++ +|.||.||++.+.---. -+-.-||.-.||-..
T Consensus 35 a~~~ptrI~cRl~~p~~~~~~PpL~egE~LlSrvlElgP~G~~F~~PV~leiPh~a 90 (161)
T 3f59_A 35 TCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFA 90 (161)
T ss_dssp SCSSCEEEEEEEECGGGCSSCCCCCTTCEECSCEEEEESTTCEEEEEEEEEEECC-
T ss_pred CCCCCcEEEEEEECCcccCCCCCCCCCccccCceeeecCCCccccCCEEEeccccc
Confidence 46666777776666555 77799999987643221 122346666666543
No 9
>3j0f_E E1 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1ld4_M 1z8y_I
Probab=4.62 E-value=2.2e+02 Score=29.39 Aligned_cols=18 Identities=39% Similarity=0.861 Sum_probs=15.1
Q ss_pred cCCCcccccccCCcchhc
Q psy4121 4 RVPYQSDRRAKCPTHVRK 21 (634)
Q Consensus 4 rvpyqsdrrakcpthvrk 21 (634)
-+.|.+|+.-|||+|.--
T Consensus 317 tl~Y~~~k~GkCaVHs~S 334 (439)
T 3j0f_E 317 TLQYVSDREGQCPVHSHS 334 (439)
T ss_pred EEEEecCCCcccceeccC
Confidence 367999999999999753
No 10
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=4.47 E-value=1.1e+02 Score=22.76 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=30.4
Q ss_pred ccccCCcchhccccccccccCCCCCCCCCccccccccCCCCccccccccc
Q psy4121 11 RRAKCPTHVRKTSESLIKFRQPSPLAEGSSAHTNFTQSSPEYPLLMRIKS 60 (634)
Q Consensus 11 rrakcpthvrktseslikfrqpsplAEG~Ss~T~F~~ns~E~Pv~s~LKS 60 (634)
|-..||.-+-+|...|-+ |+.|..-.-+.+..+....+|+++++
T Consensus 12 rGl~CP~Pvl~~k~al~~------l~~G~~L~V~~dd~~a~~di~~~~~~ 55 (78)
T 1pav_A 12 RGSYCPGPLMELIKAYKQ------AKVGEVISVYSTDAGTKKDAPAWIQK 55 (78)
T ss_dssp SSCSSCTTHHHHHHHHTT------SCTTCCEECCBSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc------CCCCCEEEEEECCccHHHHHHHHHHH
Confidence 446899999988887743 55666656666655556677777754
Done!