Query psy4121
Match_columns 634
No_of_seqs 5 out of 7
Neff 1.2
Searched_HMMs 13730
Date Fri Aug 16 17:30:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tiua_ b.1.1.4 (A:) Twitchin 10.2 1.6E+02 0.011 19.8 4.2 68 26-97 1-77 (89)
2 d1vpta_ c.66.1.25 (A:) Polymer 6.6 98 0.0071 28.2 2.1 53 19-72 166-224 (297)
3 d2v33a1 b.1.18.4 (A:293-382) F 5.7 43 0.0031 26.5 -0.9 17 5-21 26-42 (90)
4 d1gg2g_ a.137.3.1 (G:) Transdu 4.7 44 0.0032 23.6 -1.3 31 16-61 20-50 (54)
5 d1np7a2 c.28.1.1 (A:1-204) Cry 3.7 3.4E+02 0.025 20.6 3.3 9 17-25 158-166 (204)
6 d1a0ql1 b.1.1.1 (L:2-108) Immu 3.2 1.7E+02 0.013 20.8 0.9 8 36-43 13-20 (106)
7 d2es4d1 a.137.15.1 (D:53-332) 2.9 1.1E+02 0.0083 24.5 -0.5 26 53-78 2-27 (280)
8 d1okga3 d.26.1.3 (A:302-373) 3 2.8 59 0.0043 24.8 -2.3 12 48-59 60-71 (72)
9 d1t47a1 d.32.1.3 (A:16-178) 4- 2.8 1.3E+02 0.0096 21.9 -0.2 25 38-62 132-157 (163)
10 d1q8ia2 e.8.1.1 (A:390-783) Fa 2.6 1.7E+02 0.012 24.7 0.2 40 13-52 308-350 (394)
No 1
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}
Probab=10.22 E-value=1.6e+02 Score=19.85 Aligned_cols=68 Identities=18% Similarity=0.121 Sum_probs=33.4
Q ss_pred cccccCCCC---CCCCCccccccccCCCCcccccccccCCCCcc---ccceeEEEee---eEEeeCcEEEecCceEEecC
Q psy4121 26 LIKFRQPSP---LAEGSSAHTNFTQSSPEYPLLMRIKSAPGGNR---TRGLALTRQT---HYQLKGGVREDKGGVREDKG 96 (634)
Q Consensus 26 likfrqpsp---lAEG~Ss~T~F~~ns~E~Pv~s~LKSsPGGNR---TdG~~LTr~g---~~~~~GGvreDSGgV~v~~G 96 (634)
||+|.||.. +.||.++.-.-+-+.| .|...+++. |+. .+-..++..+ .|.+.-=...|+|..+..++
T Consensus 1 ~i~i~~~l~d~~v~~G~~~~~~c~vs~p-~~~v~W~k~---g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 76 (89)
T d1tiua_ 1 LIEVEKPLYGVEVFVGETAHFEIELSEP-DVHGQWKLK---GQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 76 (89)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEBCSSS-SCCCBCCSS---SCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCS
T ss_pred CEEEEcCCcCEEEeCCCcEEEEEEECCC-CcEEEEEEe---eeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEEC
Confidence 677877743 4577776544443332 333334432 111 1122333322 35555556667776666654
Q ss_pred c
Q psy4121 97 G 97 (634)
Q Consensus 97 G 97 (634)
-
T Consensus 77 n 77 (89)
T d1tiua_ 77 N 77 (89)
T ss_dssp S
T ss_pred c
Confidence 3
No 2
>d1vpta_ c.66.1.25 (A:) Polymerase regulatory subunit VP39 {Vaccinia virus [TaxId: 10245]}
Probab=6.65 E-value=98 Score=28.21 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=27.7
Q ss_pred hhccccccccccCCCCCCCCCcccccccc------CCCCcccccccccCCCCccccceeE
Q psy4121 19 VRKTSESLIKFRQPSPLAEGSSAHTNFTQ------SSPEYPLLMRIKSAPGGNRTRGLAL 72 (634)
Q Consensus 19 vrktseslikfrqpsplAEG~Ss~T~F~~------ns~E~Pv~s~LKSsPGGNRTdG~~L 72 (634)
+-|...||+|||-|-|- +-.-+.+.|.+ -||.+---++|-++-.+...++..+
T Consensus 166 ~Lkp~aslLKfR~Pfpd-~~~e~~~~~~G~~llq~~aP~~S~E~RL~v~~~~~~~~~~~~ 224 (297)
T d1vpta_ 166 ILNPVASSLKWRCPFPD-QWIKDFYIPHGNKMLQPFAPSYSAEMRLLSIYTGENMRLTRV 224 (297)
T ss_dssp HHCCSEEEEEECCCCGG-GCCCCEEEECCEEECCTTCCTTCCCEEEEEECCTTCCCEEEE
T ss_pred HHHHHHHHhcccCCCcc-ccCCceEeecCCEeccCCCCCCcceeEEEEeccCCCccceee
Confidence 44667799999999772 11222233333 3444444455555444444444443
No 3
>d2v33a1 b.1.18.4 (A:293-382) Fusion glycoprotein E1 {Semliki forest virus [TaxId: 11033]}
Probab=5.70 E-value=43 Score=26.47 Aligned_cols=17 Identities=18% Similarity=0.716 Sum_probs=14.3
Q ss_pred CCCcccccccCCcchhc
Q psy4121 5 VPYQSDRRAKCPTHVRK 21 (634)
Q Consensus 5 vpyqsdrrakcpthvrk 21 (634)
+-|.+|+--|||+|.--
T Consensus 26 l~Y~a~k~GkCaVHs~S 42 (90)
T d2v33a1 26 LTYKTNKNGDCSVHSHS 42 (90)
T ss_dssp EEEEESSCEEEEEECCC
T ss_pred EEEecCCCccceeEcCC
Confidence 56899999999999653
No 4
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.74 E-value=44 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=20.9
Q ss_pred CcchhccccccccccCCCCCCCCCccccccccCCCCcccccccccC
Q psy4121 16 PTHVRKTSESLIKFRQPSPLAEGSSAHTNFTQSSPEYPLLMRIKSA 61 (634)
Q Consensus 16 pthvrktseslikfrqpsplAEG~Ss~T~F~~ns~E~Pv~s~LKSs 61 (634)
-+-|.+++++|++| +++++.+-||++-++++
T Consensus 20 RikvS~aa~~l~~y---------------~e~~~~~Dpll~g~~~~ 50 (54)
T d1gg2g_ 20 RIKVSKAAADLMAY---------------CEAHAKEDPLLTPVPAS 50 (54)
T ss_dssp CCCHHHHHHHHHHH---------------HHHHGGGCTTTSCCCTT
T ss_pred hhhHHHHHHHHHHH---------------HHhcCcCCCCcCCCCCC
Confidence 34577788888887 45666677777655544
No 5
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=3.67 E-value=3.4e+02 Score=20.62 Aligned_cols=9 Identities=44% Similarity=0.483 Sum_probs=4.2
Q ss_pred cchhccccc
Q psy4121 17 THVRKTSES 25 (634)
Q Consensus 17 thvrktses 25 (634)
|..+|..|+
T Consensus 158 TpFrk~~e~ 166 (204)
T d1np7a2 158 TKFRKDIEK 166 (204)
T ss_dssp HHHHHHHHT
T ss_pred hHHHHHHHh
Confidence 444554443
No 6
>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}
Probab=3.17 E-value=1.7e+02 Score=20.76 Aligned_cols=8 Identities=13% Similarity=0.194 Sum_probs=3.7
Q ss_pred CCCCcccc
Q psy4121 36 AEGSSAHT 43 (634)
Q Consensus 36 AEG~Ss~T 43 (634)
++|.++.-
T Consensus 13 ~~G~svtl 20 (106)
T d1a0ql1 13 SLGGKVTI 20 (106)
T ss_dssp CTTCCEEE
T ss_pred CCCCCEEE
Confidence 45554433
No 7
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB) {Burkholderia glumae [TaxId: 337]}
Probab=2.93 E-value=1.1e+02 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=14.5
Q ss_pred ccccccccCCCCccccceeEEEeeeE
Q psy4121 53 PLLMRIKSAPGGNRTRGLALTRQTHY 78 (634)
Q Consensus 53 Pv~s~LKSsPGGNRTdG~~LTr~g~~ 78 (634)
|+|+-||.|.-|.--+.+-+.-.|||
T Consensus 2 ~~~~~~p~sl~g~~~~~l~~d~~g~l 27 (280)
T d2es4d1 2 PLPAALPGALAGSHAPRLPLAAGGRL 27 (280)
T ss_dssp CCSCSSCTTTTTCCCCCCCBCTTSSB
T ss_pred CCCcCCCccccCCCCCccccCCcCCe
Confidence 66666776666655554444444443
No 8
>d1okga3 d.26.1.3 (A:302-373) 3-mercaptopyruvate sulfurtransferase, C-terminal domain {Leishmania major [TaxId: 5664]}
Probab=2.80 E-value=59 Score=24.79 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=9.6
Q ss_pred CCCCcccccccc
Q psy4121 48 SSPEYPLLMRIK 59 (634)
Q Consensus 48 ns~E~Pv~s~LK 59 (634)
--||-|+++||.
T Consensus 60 ~~IEvp~~~n~~ 71 (72)
T d1okga3 60 VTIEVPVVPNLE 71 (72)
T ss_dssp EEEECCSSCCCC
T ss_pred EEEEcCCCCCCC
Confidence 468999999874
No 9
>d1t47a1 d.32.1.3 (A:16-178) 4-hydroxyphenylpyruvate dioxygenase, HppD {Streptomyces avermitilis [TaxId: 33903]}
Probab=2.79 E-value=1.3e+02 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=18.2
Q ss_pred CCccccccccCCCCcc-cccccccCC
Q psy4121 38 GSSAHTNFTQSSPEYP-LLMRIKSAP 62 (634)
Q Consensus 38 G~Ss~T~F~~ns~E~P-v~s~LKSsP 62 (634)
|+..|++++...+.-| ||-|.+++|
T Consensus 132 g~~~~~lier~~~~g~flp~~~~~~~ 157 (163)
T d1t47a1 132 GKTRHTLVDRTGYDGPYLPGYVAAAP 157 (163)
T ss_dssp TTCEEEEEEEEEECSSSSTTCEECCC
T ss_pred CCceEEEEeccCCCCccCCCCCcCCC
Confidence 6778888888777777 566666665
No 10
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]}
Probab=2.58 E-value=1.7e+02 Score=24.72 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=0.0
Q ss_pred ccCCcchh---ccccccccccCCCCCCCCCccccccccCCCCc
Q psy4121 13 AKCPTHVR---KTSESLIKFRQPSPLAEGSSAHTNFTQSSPEY 52 (634)
Q Consensus 13 akcpthvr---ktseslikfrqpsplAEG~Ss~T~F~~ns~E~ 52 (634)
+.||.||+ +..+.+.+..+|.+...|+.-...++.+.|+.
T Consensus 308 ~~~~~hV~~a~~~~~~~~~~~~~~~~~~g~~i~Yv~~~~~~~~ 350 (394)
T d1q8ia2 308 RNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEP 350 (394)
T ss_dssp -------------------------------------------
T ss_pred cCCChHHHHHHHHHHHhhhcCCCCCCCCCCeEEEEEECCCCch
Confidence 46788874 33333344444555556666666666555543
Done!