RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4121
(634 letters)
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 85 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 144
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 145 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 204
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 205 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 264
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 265 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 324
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 325 D 325
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 99 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 158
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 159 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 218
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 219 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 278
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 279 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 338
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 339 D 339
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 113 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 172
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 173 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 232
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 233 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 292
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 293 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 352
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 353 D 353
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 127 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 186
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 187 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 246
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 247 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 306
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 307 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 366
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 367 D 367
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 141 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 200
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 201 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 260
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 261 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 320
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 321 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 380
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 381 D 381
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 155 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 214
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 215 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 274
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 275 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 334
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 335 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 394
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 395 D 395
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 169 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 228
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 229 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 288
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 289 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 348
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 349 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 408
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 409 D 409
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 183 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 242
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 243 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 302
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 303 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 362
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 363 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 422
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 423 D 423
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 197 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 256
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 257 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 316
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 317 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 376
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 377 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 436
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 437 D 437
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 211 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 270
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 271 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 330
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 331 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 390
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 391 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 450
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 451 D 451
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 225 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 284
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 285 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 344
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 345 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 404
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 405 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 464
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 465 D 465
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 239 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 298
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 299 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 358
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 359 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 418
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 419 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 478
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 479 D 479
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 253 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 312
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 313 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 372
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 373 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 432
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 433 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 492
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 493 D 493
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 267 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 326
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 327 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 386
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 387 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 446
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 447 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 506
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 507 D 507
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 281 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 340
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 341 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 400
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 401 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 460
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 461 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 520
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 521 D 521
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 295 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 354
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 355 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 414
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 415 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 474
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 475 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 534
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 535 D 535
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 309 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 368
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 369 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 428
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 429 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 488
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 489 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 548
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 549 D 549
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 323 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 382
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 383 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 442
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 443 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 502
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 503 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 562
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 563 D 563
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 337 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 396
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 397 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 456
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 457 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 516
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 517 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 576
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 577 D 577
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 351 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 410
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 411 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 470
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 471 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 530
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 531 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 590
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 591 D 591
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 365 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 424
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 425 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 484
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 485 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 544
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 545 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 604
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 605 D 605
D
Sbjct: 290 D 290
Score = 44.5 bits (106), Expect = 2e-04
Identities = 28/241 (11%), Positives = 55/241 (22%), Gaps = 6/241 (2%)
Query: 379 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 438
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 439 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 498
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 499 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 558
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 559 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVRE 618
+ +D G +G D R+ +G D G RE + +RE
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRD----RDRRGRRGGDGGNEREPE--LRE 289
Query: 619 D 619
D
Sbjct: 290 D 290
Score = 40.7 bits (96), Expect = 0.002
Identities = 26/233 (11%), Positives = 51/233 (21%), Gaps = 4/233 (1%)
Query: 400 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 459
+E +GG + K
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 460 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 519
+ + R + + + E + E D+ R
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 520 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 579
D+ + + + R G R+ + + + + +G R
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 580 GVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDIGGPREDKGGVRE 632
+ +D E +GG R + R+ G D G RE
Sbjct: 236 RDARGDDNREDRGDRDGDD----GEGRGGRRGRRFRDRDRRGRRGGDGGNERE 284
Score = 36.4 bits (85), Expect = 0.047
Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 7/152 (4%)
Query: 57 RIKSAPGGNRTRGLALTRQTHYQLKGGVREDKG--GVREDKGGVREDKGGVREDKGGVRE 114
+ T A + + + R +G R+ + E + G
Sbjct: 144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDR 203
Query: 115 DKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGG 174
D+ RE E D+ G R + RED+G D E +GG
Sbjct: 204 DRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDD---GEGRGG 260
Query: 175 VREDKGGVREDKGGVREDKGGVREDKGGVRED 206
R + R+ +G D G RE + +RED
Sbjct: 261 RRGRRFRDRDRRGRRGGDGGNEREPE--LRED 290
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 29.2 bits (66), Expect = 8.6
Identities = 36/193 (18%), Positives = 74/193 (38%)
Query: 428 REDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDK 487
RE+ + + +RE ++ + E+ +RE + E++ + + G D
Sbjct: 250 REELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADA 309
Query: 488 GGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVR 547
V + + + +R+ R E+ +RED + E +RE+ +
Sbjct: 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELE 369
Query: 548 EDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKGGVREDKG 607
+ RE RE+ + E+ +RE G D G + +RE++ +RE +
Sbjct: 370 SELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
Query: 608 GVREDKGGVREDI 620
+ RE +
Sbjct: 430 ELEATLRTARERV 442
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.141 0.401
Gapped
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,527,093
Number of extensions: 3811540
Number of successful extensions: 1297
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1197
Number of HSP's successfully gapped: 147
Length of query: 634
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 531
Effective length of database: 6,369,140
Effective search space: 3382013340
Effective search space used: 3382013340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 62 (28.5 bits)