Query psy4122
Match_columns 162
No_of_seqs 113 out of 1063
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 17:31:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4122.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4122hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01650 PD_CobS cobaltochela 99.9 1.9E-27 4E-32 202.4 11.9 124 36-159 56-185 (327)
2 TIGR02640 gas_vesic_GvpN gas v 99.9 7.2E-26 1.6E-30 186.8 11.9 132 26-157 3-156 (262)
3 PF07728 AAA_5: AAA domain (dy 99.9 7.8E-27 1.7E-31 173.8 4.3 101 46-146 1-101 (139)
4 COG5271 MDN1 AAA ATPase contai 99.9 7.2E-24 1.6E-28 203.6 10.4 152 9-160 845-1007(4600)
5 PF07726 AAA_3: ATPase family 99.9 2.1E-22 4.6E-27 151.2 9.1 102 46-152 1-111 (131)
6 COG5271 MDN1 AAA ATPase contai 99.9 2E-22 4.2E-27 193.9 10.1 133 27-159 1526-1662(4600)
7 COG0714 MoxR-like ATPases [Gen 99.9 2.6E-22 5.6E-27 170.1 9.8 112 30-143 29-145 (329)
8 PHA02244 ATPase-like protein 99.9 6.5E-22 1.4E-26 170.9 12.2 140 12-157 87-226 (383)
9 KOG1808|consensus 99.8 3.1E-21 6.7E-26 189.3 11.1 149 12-160 400-559 (1856)
10 PF05496 RuvB_N: Holliday junc 99.7 1.1E-17 2.3E-22 136.3 10.6 99 28-141 30-132 (233)
11 PF01078 Mg_chelatase: Magnesi 99.6 1.1E-15 2.4E-20 123.0 6.1 113 43-157 21-154 (206)
12 COG2256 MGS1 ATPase related to 99.6 2.7E-15 5.9E-20 130.3 8.9 96 32-143 37-137 (436)
13 COG0542 clpA ATP-binding subun 99.6 4.4E-15 9.6E-20 137.9 9.3 99 46-147 523-630 (786)
14 COG2255 RuvB Holliday junction 99.6 6.5E-15 1.4E-19 123.5 9.1 99 28-141 32-134 (332)
15 PRK13407 bchI magnesium chelat 99.6 3.4E-15 7.5E-20 127.8 7.3 95 45-141 30-159 (334)
16 PRK11331 5-methylcytosine-spec 99.6 2.3E-14 5E-19 126.8 10.9 105 33-137 183-300 (459)
17 PF07724 AAA_2: AAA domain (Cd 99.6 7.8E-15 1.7E-19 114.7 6.6 94 46-144 5-113 (171)
18 PRK13531 regulatory ATPase Rav 99.5 2E-14 4.3E-19 128.2 8.8 105 32-141 27-138 (498)
19 PRK11034 clpA ATP-dependent Cl 99.5 6.7E-14 1.4E-18 130.7 10.5 97 46-145 490-592 (758)
20 COG0466 Lon ATP-dependent Lon 99.5 1.2E-13 2.5E-18 126.9 9.7 89 43-135 349-446 (782)
21 KOG2004|consensus 99.5 1.5E-13 3.3E-18 126.2 9.7 105 27-135 417-534 (906)
22 TIGR00635 ruvB Holliday juncti 99.5 3.5E-13 7.5E-18 112.2 10.0 96 29-139 11-110 (305)
23 TIGR02639 ClpA ATP-dependent C 99.5 3.6E-13 7.7E-18 125.3 10.7 97 46-145 486-588 (731)
24 TIGR02031 BchD-ChlD magnesium 99.4 6.4E-14 1.4E-18 127.7 4.9 107 46-156 18-131 (589)
25 TIGR02030 BchI-ChlI magnesium 99.4 2.2E-13 4.8E-18 116.9 7.9 96 44-141 25-162 (337)
26 PF00158 Sigma54_activat: Sigm 99.4 2.1E-13 4.6E-18 106.3 6.5 114 28-143 6-126 (168)
27 PRK00080 ruvB Holliday junctio 99.4 9.4E-13 2E-17 111.5 10.7 97 28-139 31-131 (328)
28 PRK05342 clpX ATP-dependent pr 99.4 1.3E-13 2.9E-18 121.0 3.9 103 44-149 108-227 (412)
29 TIGR02442 Cob-chelat-sub cobal 99.4 8.5E-13 1.8E-17 121.2 7.8 94 46-141 27-157 (633)
30 PF12774 AAA_6: Hydrolytic ATP 99.4 7.5E-12 1.6E-16 102.3 11.4 101 21-135 9-109 (231)
31 CHL00081 chlI Mg-protoporyphyr 99.4 1.3E-12 2.7E-17 112.7 7.1 99 46-146 40-181 (350)
32 COG0606 Predicted ATPase with 99.4 4.4E-13 9.6E-18 118.6 3.9 110 40-157 194-331 (490)
33 TIGR00382 clpX endopeptidase C 99.3 2.3E-12 4.9E-17 113.3 7.9 88 45-142 117-227 (413)
34 TIGR00368 Mg chelatase-related 99.3 1.4E-12 3.1E-17 117.0 6.7 121 34-156 201-342 (499)
35 KOG2028|consensus 99.3 1.8E-12 3.9E-17 112.5 7.0 111 33-155 152-265 (554)
36 TIGR03345 VI_ClpV1 type VI sec 99.3 5E-12 1.1E-16 119.6 10.4 98 47-147 599-705 (852)
37 TIGR00763 lon ATP-dependent pr 99.3 2.9E-12 6.3E-17 120.0 8.6 91 43-136 346-444 (775)
38 PRK09862 putative ATP-dependen 99.3 1.7E-12 3.8E-17 116.5 6.7 121 34-156 200-341 (506)
39 CHL00095 clpC Clp protease ATP 99.3 5.6E-12 1.2E-16 118.7 10.0 98 47-147 542-648 (821)
40 PRK10787 DNA-binding ATP-depen 99.3 8.6E-12 1.9E-16 117.1 10.8 91 43-136 348-446 (784)
41 TIGR03346 chaperone_ClpB ATP-d 99.3 9.6E-12 2.1E-16 117.6 11.1 96 46-144 597-701 (852)
42 cd00009 AAA The AAA+ (ATPases 99.3 1.2E-11 2.6E-16 89.0 8.2 90 44-137 19-111 (151)
43 PRK13342 recombination factor 99.3 1.8E-11 3.8E-16 107.1 10.5 93 33-141 26-123 (413)
44 PF00004 AAA: ATPase family as 99.3 4.8E-12 1E-16 91.6 5.4 82 47-136 1-95 (132)
45 smart00350 MCM minichromosome 99.3 9.7E-12 2.1E-16 111.6 8.5 93 46-142 238-332 (509)
46 PRK13406 bchD magnesium chelat 99.3 3.8E-12 8.2E-17 116.1 5.7 110 46-157 27-141 (584)
47 TIGR02974 phageshock_pspF psp 99.3 3.1E-11 6.6E-16 103.1 10.2 113 27-141 5-124 (329)
48 PRK10865 protein disaggregatio 99.2 4.6E-11 9.9E-16 113.2 9.9 93 46-141 600-701 (857)
49 COG1221 PspF Transcriptional r 99.2 4.1E-11 8.9E-16 104.9 8.5 112 27-140 84-203 (403)
50 PHA02544 44 clamp loader, smal 99.2 2E-10 4.4E-15 96.0 11.3 122 3-136 2-127 (316)
51 PRK11608 pspF phage shock prot 99.2 1.9E-10 4.2E-15 97.9 11.3 115 27-143 12-133 (326)
52 PRK15424 propionate catabolism 99.2 1E-10 2.2E-15 105.9 9.7 111 27-142 225-354 (538)
53 TIGR01817 nifA Nif-specific re 99.2 1.6E-10 3.4E-15 104.0 10.4 115 27-143 202-323 (534)
54 PRK11388 DNA-binding transcrip 99.2 1.6E-10 3.6E-15 105.8 9.8 111 27-141 331-447 (638)
55 PRK13341 recombination factor 99.1 2.6E-10 5.7E-15 106.3 9.5 101 32-142 41-141 (725)
56 COG1219 ClpX ATP-dependent pro 99.1 1E-10 2.2E-15 99.9 6.0 102 45-153 98-220 (408)
57 PRK05022 anaerobic nitric oxid 99.1 5.9E-10 1.3E-14 100.0 10.9 113 27-141 193-312 (509)
58 TIGR02902 spore_lonB ATP-depen 99.1 4E-10 8.7E-15 101.8 9.8 112 28-142 71-207 (531)
59 PRK08903 DnaA regulatory inact 99.1 5.8E-10 1.3E-14 89.4 9.4 88 27-135 25-115 (227)
60 PRK14956 DNA polymerase III su 99.1 5.2E-10 1.1E-14 100.0 9.9 110 27-136 23-147 (484)
61 TIGR02329 propionate_PrpR prop 99.1 4E-10 8.6E-15 101.8 8.9 110 27-141 218-338 (526)
62 PRK04195 replication factor C 99.1 5E-10 1.1E-14 99.8 9.2 105 26-137 18-129 (482)
63 PLN03025 replication factor C 99.1 7.3E-10 1.6E-14 93.7 9.8 103 27-136 18-125 (319)
64 TIGR02880 cbbX_cfxQ probable R 99.1 2.2E-10 4.8E-15 95.9 6.4 82 44-137 58-157 (284)
65 PRK15429 formate hydrogenlyase 99.1 7.4E-10 1.6E-14 102.4 10.2 113 27-141 382-501 (686)
66 COG1239 ChlI Mg-chelatase subu 99.1 2.2E-10 4.9E-15 100.3 6.4 108 46-155 40-190 (423)
67 PRK14962 DNA polymerase III su 99.1 1E-09 2.2E-14 98.1 10.3 107 27-136 19-143 (472)
68 TIGR03420 DnaA_homol_Hda DnaA 99.1 7E-10 1.5E-14 88.1 8.4 92 26-135 21-117 (226)
69 TIGR02881 spore_V_K stage V sp 99.1 3.4E-10 7.5E-15 93.1 6.8 84 45-137 43-140 (261)
70 COG3829 RocR Transcriptional r 99.1 5.5E-10 1.2E-14 100.4 8.3 117 27-153 251-390 (560)
71 KOG1051|consensus 99.0 3.8E-10 8.2E-15 106.6 7.5 98 47-147 594-697 (898)
72 PF00493 MCM: MCM2/3/5 family 99.0 1.9E-10 4.2E-15 98.2 4.7 95 45-143 58-154 (331)
73 COG1222 RPT1 ATP-dependent 26S 99.0 5.5E-10 1.2E-14 96.4 7.0 85 43-135 184-280 (406)
74 smart00763 AAA_PrkA PrkA AAA d 99.0 2.4E-09 5.1E-14 92.8 10.5 49 102-152 230-285 (361)
75 KOG0743|consensus 99.0 1.9E-09 4.2E-14 95.1 10.0 61 47-122 238-298 (457)
76 PRK14958 DNA polymerase III su 99.0 2.1E-09 4.7E-14 96.7 10.4 107 27-136 21-145 (509)
77 PRK14960 DNA polymerase III su 99.0 3.2E-09 6.8E-14 98.1 11.3 107 27-136 20-144 (702)
78 CHL00181 cbbX CbbX; Provisiona 99.0 4.6E-10 1E-14 94.2 5.4 83 44-137 59-158 (287)
79 COG2204 AtoC Response regulato 99.0 1.4E-09 3.1E-14 96.8 8.4 117 27-145 147-270 (464)
80 PTZ00111 DNA replication licen 99.0 3.4E-10 7.4E-15 107.1 4.6 93 46-142 494-589 (915)
81 PRK10820 DNA-binding transcrip 99.0 2.7E-09 5.9E-14 96.1 10.0 111 27-139 210-327 (520)
82 KOG0733|consensus 99.0 1E-09 2.2E-14 100.0 7.2 100 28-135 196-318 (802)
83 PF13401 AAA_22: AAA domain; P 99.0 5.5E-10 1.2E-14 81.2 4.1 97 44-140 4-118 (131)
84 PRK14961 DNA polymerase III su 99.0 4.4E-09 9.6E-14 90.7 10.3 107 27-136 21-145 (363)
85 smart00382 AAA ATPases associa 99.0 8.8E-10 1.9E-14 78.1 5.0 89 44-132 2-100 (148)
86 COG3604 FhlA Transcriptional r 99.0 2.6E-09 5.6E-14 95.4 8.7 109 26-144 228-351 (550)
87 PRK14949 DNA polymerase III su 99.0 3.4E-09 7.3E-14 100.4 9.8 109 27-136 21-145 (944)
88 TIGR02903 spore_lon_C ATP-depe 98.9 4E-09 8.8E-14 96.9 9.8 97 44-142 175-297 (615)
89 PRK14957 DNA polymerase III su 98.9 6.1E-09 1.3E-13 94.5 10.6 108 27-137 21-146 (546)
90 PRK06645 DNA polymerase III su 98.9 7E-09 1.5E-13 93.5 10.7 125 9-136 7-154 (507)
91 PRK12323 DNA polymerase III su 98.9 5.4E-09 1.2E-13 96.5 10.0 107 27-136 21-150 (700)
92 PRK11361 acetoacetate metaboli 98.9 3.2E-09 6.9E-14 92.7 7.8 113 27-141 149-268 (457)
93 PRK12377 putative replication 98.9 3.3E-09 7.1E-14 87.6 7.3 99 30-137 86-192 (248)
94 TIGR02915 PEP_resp_reg putativ 98.9 4.6E-09 1E-13 91.6 8.5 100 42-143 160-266 (445)
95 PRK14964 DNA polymerase III su 98.9 1E-08 2.2E-13 92.1 10.6 101 27-136 18-142 (491)
96 PRK08084 DNA replication initi 98.9 5.7E-09 1.2E-13 84.9 8.3 97 27-141 29-136 (235)
97 PRK14955 DNA polymerase III su 98.9 9.7E-09 2.1E-13 89.6 10.0 109 27-136 21-153 (397)
98 PRK07994 DNA polymerase III su 98.9 7.1E-09 1.5E-13 95.7 9.5 106 27-136 21-145 (647)
99 PRK08116 hypothetical protein; 98.9 5.1E-09 1.1E-13 87.1 7.7 103 30-137 96-207 (268)
100 PF14532 Sigma54_activ_2: Sigm 98.9 3.4E-09 7.4E-14 79.2 5.9 80 36-136 13-95 (138)
101 PRK07940 DNA polymerase III su 98.9 1.6E-08 3.5E-13 88.6 10.8 107 28-136 11-143 (394)
102 TIGR02639 ClpA ATP-dependent C 98.9 3.8E-09 8.3E-14 98.5 7.2 89 45-142 204-315 (731)
103 PRK10923 glnG nitrogen regulat 98.9 7.8E-09 1.7E-13 90.9 8.7 115 27-143 144-265 (469)
104 PRK07003 DNA polymerase III su 98.9 1.1E-08 2.5E-13 95.6 10.0 107 27-136 21-145 (830)
105 CHL00195 ycf46 Ycf46; Provisio 98.9 5.5E-09 1.2E-13 93.7 7.4 73 43-123 258-331 (489)
106 PF12775 AAA_7: P-loop contain 98.9 9E-09 2E-13 85.9 8.1 110 26-141 15-137 (272)
107 PRK03992 proteasome-activating 98.8 5.9E-09 1.3E-13 90.8 6.9 83 44-135 165-260 (389)
108 PRK14969 DNA polymerase III su 98.8 2E-08 4.4E-13 90.8 10.6 107 27-136 21-145 (527)
109 PRK07764 DNA polymerase III su 98.8 1.8E-08 3.8E-13 95.4 10.4 107 27-136 20-146 (824)
110 CHL00176 ftsH cell division pr 98.8 1.4E-08 3E-13 93.8 9.5 72 44-123 216-288 (638)
111 PRK14951 DNA polymerase III su 98.8 1.6E-08 3.4E-13 93.1 9.7 106 27-136 21-150 (618)
112 COG1484 DnaC DNA replication p 98.8 1.2E-08 2.5E-13 84.5 8.0 102 27-135 88-194 (254)
113 PRK14959 DNA polymerase III su 98.8 2.2E-08 4.7E-13 92.1 10.4 106 27-136 21-145 (624)
114 PRK07952 DNA replication prote 98.8 1.1E-08 2.4E-13 84.3 7.7 101 29-137 83-191 (244)
115 TIGR01241 FtsH_fam ATP-depende 98.8 1E-08 2.2E-13 91.6 7.9 72 44-123 88-160 (495)
116 PRK08691 DNA polymerase III su 98.8 2.6E-08 5.7E-13 92.4 10.7 107 27-136 21-145 (709)
117 PF01695 IstB_IS21: IstB-like 98.8 2.6E-09 5.6E-14 83.9 3.3 99 28-137 32-137 (178)
118 PRK14963 DNA polymerase III su 98.8 3.1E-08 6.6E-13 89.3 10.4 106 28-136 20-142 (504)
119 KOG0989|consensus 98.8 5.4E-09 1.2E-13 88.8 5.1 104 28-136 42-155 (346)
120 TIGR00678 holB DNA polymerase 98.8 3.7E-08 8E-13 76.9 9.5 103 32-136 2-122 (188)
121 PRK08181 transposase; Validate 98.8 1E-08 2.2E-13 85.6 6.7 101 26-136 88-195 (269)
122 PRK06620 hypothetical protein; 98.8 2E-08 4.4E-13 81.0 8.1 89 28-141 25-117 (214)
123 PF13173 AAA_14: AAA domain 98.8 2.4E-08 5.1E-13 73.7 7.7 83 44-137 2-87 (128)
124 PRK15115 response regulator Gl 98.8 2E-08 4.4E-13 87.6 8.3 113 27-141 140-259 (444)
125 PRK12402 replication factor C 98.8 3.7E-08 8.1E-13 82.4 9.6 109 27-136 20-151 (337)
126 PRK10865 protein disaggregatio 98.8 1.2E-08 2.6E-13 96.9 7.3 102 31-142 187-311 (857)
127 KOG0734|consensus 98.8 3.2E-08 6.8E-13 89.5 9.5 70 45-124 338-410 (752)
128 TIGR02397 dnaX_nterm DNA polym 98.8 6.1E-08 1.3E-12 81.9 10.8 107 27-136 19-143 (355)
129 PRK14954 DNA polymerase III su 98.8 4.7E-08 1E-12 90.0 10.5 108 28-136 22-153 (620)
130 PRK14952 DNA polymerase III su 98.8 4.8E-08 1E-12 89.4 10.5 107 27-136 18-144 (584)
131 KOG0727|consensus 98.8 1.3E-08 2.8E-13 85.3 6.1 84 43-135 188-284 (408)
132 PRK14950 DNA polymerase III su 98.8 7.8E-08 1.7E-12 87.9 11.5 110 27-137 21-147 (585)
133 PLN00020 ribulose bisphosphate 98.8 1.3E-08 2.8E-13 88.8 6.0 72 45-124 149-226 (413)
134 PRK14948 DNA polymerase III su 98.7 7.1E-08 1.5E-12 88.8 10.9 106 27-136 21-147 (620)
135 KOG0745|consensus 98.7 2.8E-08 6E-13 88.0 7.7 93 45-143 227-338 (564)
136 TIGR01243 CDC48 AAA family ATP 98.7 2.4E-08 5.3E-13 93.1 7.8 71 44-122 487-558 (733)
137 PRK06893 DNA replication initi 98.7 3.8E-08 8.2E-13 79.8 7.6 61 46-123 41-104 (229)
138 TIGR02928 orc1/cdc6 family rep 98.7 3.6E-08 7.7E-13 83.8 7.8 43 45-87 41-92 (365)
139 TIGR03689 pup_AAA proteasome A 98.7 9.5E-08 2E-12 86.3 10.8 29 43-71 215-243 (512)
140 PRK14965 DNA polymerase III su 98.7 7.7E-08 1.7E-12 87.8 10.2 107 27-136 21-145 (576)
141 PTZ00454 26S protease regulato 98.7 1.1E-08 2.5E-13 89.6 4.6 35 43-77 178-212 (398)
142 PRK06526 transposase; Provisio 98.7 6.2E-09 1.4E-13 86.1 2.8 84 43-136 97-187 (254)
143 COG4650 RtcR Sigma54-dependent 98.7 4.3E-08 9.3E-13 83.9 7.9 121 29-157 195-328 (531)
144 TIGR03015 pepcterm_ATPase puta 98.7 9.4E-08 2E-12 77.7 9.4 109 27-135 25-148 (269)
145 CHL00095 clpC Clp protease ATP 98.7 2.8E-08 6.1E-13 93.9 7.1 102 31-142 188-311 (821)
146 PRK09111 DNA polymerase III su 98.7 9.7E-08 2.1E-12 87.6 10.2 107 27-136 29-158 (598)
147 PRK00440 rfc replication facto 98.7 1.6E-07 3.4E-12 78.0 10.5 98 27-136 22-128 (319)
148 PRK10365 transcriptional regul 98.7 9.4E-08 2E-12 83.0 9.4 113 27-141 145-264 (441)
149 PRK05896 DNA polymerase III su 98.7 1.1E-07 2.3E-12 87.3 10.1 106 27-136 21-145 (605)
150 TIGR01242 26Sp45 26S proteasom 98.7 9.8E-09 2.1E-13 88.3 3.1 33 44-76 156-188 (364)
151 TIGR01243 CDC48 AAA family ATP 98.7 7.9E-08 1.7E-12 89.7 9.4 85 43-135 211-307 (733)
152 COG1241 MCM2 Predicted ATPase 98.7 4E-08 8.6E-13 91.1 7.2 96 46-145 321-418 (682)
153 PRK06305 DNA polymerase III su 98.7 1.2E-07 2.7E-12 84.2 10.0 106 27-136 22-147 (451)
154 KOG1969|consensus 98.7 4.3E-08 9.4E-13 90.9 7.1 86 45-136 327-413 (877)
155 TIGR01818 ntrC nitrogen regula 98.7 7.5E-08 1.6E-12 84.4 8.2 113 27-141 140-259 (463)
156 PRK08939 primosomal protein Dn 98.7 6E-08 1.3E-12 82.3 7.3 87 43-137 155-247 (306)
157 KOG0478|consensus 98.7 2.7E-08 5.8E-13 91.6 5.4 95 45-143 463-559 (804)
158 PRK05563 DNA polymerase III su 98.7 1.7E-07 3.7E-12 85.4 10.5 108 27-137 21-146 (559)
159 COG1223 Predicted ATPase (AAA+ 98.7 2E-08 4.4E-13 84.2 4.1 85 43-135 150-244 (368)
160 TIGR03346 chaperone_ClpB ATP-d 98.7 6.3E-08 1.4E-12 91.9 7.9 102 31-142 182-306 (852)
161 TIGR03345 VI_ClpV1 type VI sec 98.7 1.1E-07 2.4E-12 90.4 9.5 90 46-142 210-320 (852)
162 PRK14970 DNA polymerase III su 98.7 2.1E-07 4.5E-12 79.8 10.3 95 27-136 22-134 (367)
163 PRK06647 DNA polymerase III su 98.6 1.6E-07 3.5E-12 85.7 9.8 106 27-136 21-145 (563)
164 COG0470 HolB ATPase involved i 98.6 8.6E-08 1.9E-12 79.5 7.3 95 29-136 8-135 (325)
165 PRK08727 hypothetical protein; 98.6 2E-07 4.2E-12 75.8 9.2 88 30-135 28-120 (233)
166 TIGR00764 lon_rel lon-related 98.6 1.2E-07 2.6E-12 87.2 8.6 34 110-143 217-250 (608)
167 PRK06921 hypothetical protein; 98.6 1E-07 2.3E-12 79.2 7.5 83 44-137 117-211 (266)
168 PRK13765 ATP-dependent proteas 98.6 8.4E-08 1.8E-12 88.6 7.5 34 110-143 226-259 (637)
169 KOG1808|consensus 98.6 3.2E-08 6.9E-13 98.9 4.9 106 27-142 1029-1135(1856)
170 PRK08451 DNA polymerase III su 98.6 3.2E-07 6.9E-12 83.2 10.9 101 27-136 19-143 (535)
171 PRK05642 DNA replication initi 98.6 2.6E-07 5.7E-12 75.2 9.4 90 28-134 27-123 (234)
172 PRK14953 DNA polymerase III su 98.6 3.4E-07 7.3E-12 82.2 10.7 108 27-137 21-146 (486)
173 PRK09183 transposase/IS protei 98.6 6E-08 1.3E-12 80.3 5.4 100 27-136 86-192 (259)
174 PRK00411 cdc6 cell division co 98.6 2.2E-07 4.7E-12 79.8 8.9 91 45-135 56-167 (394)
175 PRK11034 clpA ATP-dependent Cl 98.6 5.3E-08 1.2E-12 91.4 5.5 98 44-142 207-319 (758)
176 KOG0480|consensus 98.6 7.1E-08 1.5E-12 88.3 6.1 94 46-143 380-475 (764)
177 PTZ00361 26 proteosome regulat 98.6 5.6E-08 1.2E-12 86.2 4.8 35 43-77 216-250 (438)
178 CHL00206 ycf2 Ycf2; Provisiona 98.6 1.6E-07 3.4E-12 94.3 8.4 36 43-78 1629-1664(2281)
179 COG0464 SpoVK ATPases of the A 98.6 4.5E-08 9.7E-13 87.2 4.0 73 44-124 276-349 (494)
180 COG3284 AcoR Transcriptional a 98.6 9.3E-08 2E-12 87.2 5.9 119 25-146 317-443 (606)
181 KOG0738|consensus 98.6 6.7E-08 1.4E-12 84.6 4.6 77 46-135 247-341 (491)
182 PRK00149 dnaA chromosomal repl 98.5 2.4E-07 5.1E-12 81.9 7.8 106 28-141 131-249 (450)
183 PRK07133 DNA polymerase III su 98.5 5.6E-07 1.2E-11 84.1 10.5 105 27-136 23-144 (725)
184 KOG0737|consensus 98.5 6.8E-08 1.5E-12 83.6 4.0 65 44-121 127-197 (386)
185 PF03266 NTPase_1: NTPase; In 98.5 5.2E-07 1.1E-11 70.3 8.3 96 46-141 1-129 (168)
186 PRK06835 DNA replication prote 98.5 1.1E-07 2.5E-12 81.4 4.8 89 43-137 182-275 (329)
187 KOG0733|consensus 98.5 1.2E-07 2.5E-12 86.8 5.0 71 46-124 547-618 (802)
188 TIGR00362 DnaA chromosomal rep 98.5 1.7E-07 3.8E-12 81.5 6.0 87 30-124 121-213 (405)
189 PRK14971 DNA polymerase III su 98.5 9E-07 2E-11 81.5 10.9 107 27-136 22-147 (614)
190 COG1474 CDC6 Cdc6-related prot 98.5 1.9E-07 4E-12 81.2 5.9 91 45-135 43-148 (366)
191 PRK10733 hflB ATP-dependent me 98.5 5.9E-07 1.3E-11 83.0 9.2 72 44-123 185-257 (644)
192 TIGR02688 conserved hypothetic 98.5 4.7E-07 1E-11 80.2 8.1 95 28-141 193-295 (449)
193 PF03215 Rad17: Rad17 cell cyc 98.5 3.4E-07 7.4E-12 82.8 7.4 61 15-75 12-76 (519)
194 KOG0731|consensus 98.5 7.2E-08 1.6E-12 90.0 3.0 73 44-124 344-417 (774)
195 KOG0991|consensus 98.5 6.6E-07 1.4E-11 74.3 8.0 99 27-135 32-138 (333)
196 PRK14088 dnaA chromosomal repl 98.5 4.5E-07 9.7E-12 80.4 7.5 100 30-137 116-227 (440)
197 PF00910 RNA_helicase: RNA hel 98.5 2.1E-07 4.5E-12 67.0 4.4 81 47-142 1-85 (107)
198 KOG0735|consensus 98.4 5.6E-07 1.2E-11 83.6 7.8 101 28-136 673-797 (952)
199 PRK08058 DNA polymerase III su 98.4 1.6E-06 3.4E-11 74.0 10.1 107 28-136 12-136 (329)
200 PF13177 DNA_pol3_delta2: DNA 98.4 2.4E-06 5.2E-11 65.9 10.0 107 28-137 3-129 (162)
201 KOG0742|consensus 98.4 3.3E-07 7.2E-12 81.0 5.8 101 26-135 359-477 (630)
202 KOG0730|consensus 98.4 1.5E-07 3.2E-12 86.4 3.8 85 43-135 467-563 (693)
203 PF05673 DUF815: Protein of un 98.4 2E-06 4.4E-11 71.2 10.1 110 30-156 39-153 (249)
204 PRK09112 DNA polymerase III su 98.4 1E-06 2.2E-11 76.1 7.9 109 28-136 29-167 (351)
205 KOG0477|consensus 98.4 2.6E-07 5.5E-12 84.8 4.4 93 46-143 484-579 (854)
206 COG3283 TyrR Transcriptional r 98.4 1.3E-06 2.8E-11 76.3 8.4 93 43-141 226-324 (511)
207 PTZ00112 origin recognition co 98.4 1.3E-06 2.8E-11 83.3 9.1 89 47-135 784-894 (1164)
208 PRK09087 hypothetical protein; 98.4 1.6E-06 3.6E-11 70.4 8.2 73 44-139 44-119 (226)
209 PRK12422 chromosomal replicati 98.4 5.1E-07 1.1E-11 80.2 5.3 72 45-124 142-216 (445)
210 PRK05707 DNA polymerase III su 98.4 2.8E-06 6.1E-11 72.8 9.7 103 33-136 11-132 (328)
211 PRK14086 dnaA chromosomal repl 98.4 1.3E-06 2.8E-11 80.4 8.0 104 30-141 299-415 (617)
212 PF00308 Bac_DnaA: Bacterial d 98.4 2E-06 4.2E-11 69.5 8.0 101 27-135 16-124 (219)
213 PRK05564 DNA polymerase III su 98.3 6.5E-06 1.4E-10 69.4 11.4 100 28-136 10-119 (313)
214 KOG0739|consensus 98.3 8.4E-07 1.8E-11 75.9 5.1 69 46-123 168-238 (439)
215 PF13207 AAA_17: AAA domain; P 98.3 7.7E-07 1.7E-11 64.0 4.3 26 47-72 2-27 (121)
216 PRK07471 DNA polymerase III su 98.3 3.9E-06 8.5E-11 72.9 9.2 41 28-68 25-65 (365)
217 KOG0651|consensus 98.3 2.5E-06 5.4E-11 73.1 7.2 84 44-135 166-261 (388)
218 PHA00729 NTP-binding motif con 98.2 3.1E-06 6.7E-11 69.3 7.1 24 46-69 19-42 (226)
219 KOG0726|consensus 98.2 7E-07 1.5E-11 76.2 3.3 69 41-123 216-291 (440)
220 KOG0741|consensus 98.2 8.7E-07 1.9E-11 80.3 4.0 69 46-121 540-609 (744)
221 PRK04296 thymidine kinase; Pro 98.2 6.1E-06 1.3E-10 65.1 8.3 94 44-137 2-106 (190)
222 TIGR00602 rad24 checkpoint pro 98.2 2.4E-06 5.2E-11 79.0 6.6 48 26-73 88-139 (637)
223 PF01443 Viral_helicase1: Vira 98.2 3.2E-06 6.9E-11 67.2 6.4 95 47-146 1-99 (234)
224 KOG0736|consensus 98.2 1.6E-06 3.4E-11 81.2 5.1 71 46-124 707-778 (953)
225 PRK14087 dnaA chromosomal repl 98.2 2.1E-06 4.6E-11 76.3 5.8 106 30-141 126-244 (450)
226 COG0465 HflB ATP-dependent Zn 98.2 8E-07 1.7E-11 81.4 3.0 75 42-125 181-257 (596)
227 COG1618 Predicted nucleotide k 98.2 1.2E-05 2.5E-10 63.2 8.8 94 45-138 6-131 (179)
228 KOG0652|consensus 98.2 6.8E-07 1.5E-11 75.4 2.1 73 43-123 204-277 (424)
229 cd01120 RecA-like_NTPases RecA 98.2 7.5E-06 1.6E-10 60.3 7.3 33 46-78 1-36 (165)
230 PF05970 PIF1: PIF1-like helic 98.2 8.2E-06 1.8E-10 70.5 8.4 105 31-135 7-127 (364)
231 KOG0741|consensus 98.1 3.4E-07 7.4E-12 82.9 -0.7 33 46-78 258-291 (744)
232 PRK13947 shikimate kinase; Pro 98.1 2.5E-06 5.5E-11 65.0 4.0 28 46-73 3-30 (171)
233 PF13604 AAA_30: AAA domain; P 98.1 1.2E-05 2.7E-10 63.7 8.1 105 26-136 2-119 (196)
234 PF12780 AAA_8: P-loop contain 98.1 5.3E-06 1.2E-10 69.3 5.9 104 26-139 12-118 (268)
235 KOG0729|consensus 98.1 3.7E-06 8.1E-11 71.2 4.9 72 43-123 210-283 (435)
236 PRK00131 aroK shikimate kinase 98.1 3.2E-06 7E-11 63.9 4.1 30 44-73 4-33 (175)
237 PRK10536 hypothetical protein; 98.1 2.1E-05 4.6E-10 65.6 9.3 98 44-141 74-208 (262)
238 KOG0728|consensus 98.1 2.8E-06 6E-11 71.4 3.4 74 43-124 180-254 (404)
239 PRK08118 topology modulation p 98.1 3.5E-06 7.6E-11 65.3 3.8 28 46-73 3-30 (167)
240 KOG3347|consensus 98.1 4.8E-06 1E-10 64.7 4.4 33 44-78 7-39 (176)
241 COG1220 HslU ATP-dependent pro 98.1 6E-06 1.3E-10 71.6 5.4 41 41-81 47-87 (444)
242 cd00227 CPT Chloramphenicol (C 98.1 1.9E-05 4.1E-10 61.0 7.7 29 44-72 2-30 (175)
243 PRK07993 DNA polymerase III su 98.1 3.3E-05 7.1E-10 66.4 9.9 105 30-136 10-134 (334)
244 cd01131 PilT Pilus retraction 98.1 2.3E-05 5E-10 62.1 8.3 90 46-141 3-103 (198)
245 TIGR00390 hslU ATP-dependent p 98.1 4.7E-06 1E-10 73.9 4.7 35 44-78 47-81 (441)
246 cd00464 SK Shikimate kinase (S 98.1 4.6E-06 1E-10 62.1 4.0 28 46-73 1-28 (154)
247 PHA02774 E1; Provisional 98.0 2.3E-05 5E-10 71.9 9.1 91 29-141 419-511 (613)
248 PRK08699 DNA polymerase III su 98.0 6.9E-05 1.5E-09 64.1 11.5 26 112-137 115-140 (325)
249 PF13671 AAA_33: AAA domain; P 98.0 3.7E-06 8E-11 61.9 3.2 83 47-135 2-93 (143)
250 PF06068 TIP49: TIP49 C-termin 98.0 1.1E-05 2.4E-10 70.5 6.4 48 31-78 36-86 (398)
251 PRK07399 DNA polymerase III su 98.0 6E-05 1.3E-09 64.2 10.8 109 28-136 10-150 (314)
252 cd01129 PulE-GspE PulE/GspE Th 98.0 6.3E-05 1.4E-09 62.5 10.7 110 26-141 64-178 (264)
253 PRK03839 putative kinase; Prov 98.0 5.3E-06 1.1E-10 64.1 3.9 28 46-73 2-29 (180)
254 cd01128 rho_factor Transcripti 98.0 1.1E-05 2.4E-10 66.7 5.9 49 40-88 12-66 (249)
255 KOG2170|consensus 98.0 1.3E-05 2.9E-10 68.2 6.4 100 28-135 92-203 (344)
256 PRK13695 putative NTPase; Prov 98.0 2.3E-05 5E-10 60.4 7.2 23 46-68 2-24 (174)
257 PRK05201 hslU ATP-dependent pr 98.0 6.2E-06 1.3E-10 73.2 4.3 35 44-78 50-84 (443)
258 PRK00625 shikimate kinase; Pro 98.0 7.2E-06 1.6E-10 64.2 4.1 29 46-74 2-30 (173)
259 TIGR02322 phosphon_PhnN phosph 98.0 4.1E-05 8.8E-10 58.9 8.2 26 45-70 2-27 (179)
260 COG1224 TIP49 DNA helicase TIP 98.0 1.1E-05 2.3E-10 70.4 5.3 49 30-78 50-99 (450)
261 PRK06871 DNA polymerase III su 98.0 4.8E-05 1E-09 65.3 9.3 106 29-136 9-133 (325)
262 PRK14530 adenylate kinase; Pro 98.0 8.6E-06 1.9E-10 65.0 4.2 30 44-73 3-32 (215)
263 TIGR00150 HI0065_YjeE ATPase, 98.0 2E-05 4.4E-10 59.6 6.0 42 30-71 8-49 (133)
264 PRK13949 shikimate kinase; Pro 97.9 8.8E-06 1.9E-10 63.2 3.9 28 46-73 3-30 (169)
265 PF05621 TniB: Bacterial TniB 97.9 3.2E-05 7E-10 65.7 7.5 112 27-138 42-180 (302)
266 PRK14532 adenylate kinase; Pro 97.9 8.3E-06 1.8E-10 63.4 3.6 27 46-72 2-28 (188)
267 PRK13946 shikimate kinase; Pro 97.9 1.2E-05 2.6E-10 62.9 4.4 34 40-73 6-39 (184)
268 COG2607 Predicted ATPase (AAA+ 97.9 7.1E-05 1.5E-09 62.3 8.8 111 30-154 72-184 (287)
269 PRK03731 aroL shikimate kinase 97.9 1.3E-05 2.9E-10 61.2 4.3 30 45-74 3-32 (171)
270 KOG0730|consensus 97.9 2.2E-05 4.8E-10 72.4 6.3 84 43-135 217-313 (693)
271 PRK07261 topology modulation p 97.9 1.2E-05 2.5E-10 62.5 3.9 28 46-73 2-29 (171)
272 COG4178 ABC-type uncharacteriz 97.9 1.8E-05 3.9E-10 72.7 5.6 105 32-136 407-560 (604)
273 PF00437 T2SE: Type II/IV secr 97.9 4.1E-05 8.9E-10 62.9 7.2 109 27-140 109-224 (270)
274 COG0593 DnaA ATPase involved i 97.9 5.7E-05 1.2E-09 66.7 8.4 80 44-141 113-213 (408)
275 COG0703 AroK Shikimate kinase 97.9 1.2E-05 2.6E-10 63.3 3.8 30 45-74 3-32 (172)
276 PF09848 DUF2075: Uncharacteri 97.9 2.9E-05 6.2E-10 66.6 6.4 107 46-152 3-135 (352)
277 cd02020 CMPK Cytidine monophos 97.9 1.4E-05 3E-10 58.8 3.9 27 47-73 2-28 (147)
278 TIGR03263 guanyl_kin guanylate 97.9 9.2E-06 2E-10 62.4 2.9 27 44-70 1-27 (180)
279 PRK14531 adenylate kinase; Pro 97.9 1.6E-05 3.4E-10 62.0 4.2 29 44-72 2-30 (183)
280 TIGR02782 TrbB_P P-type conjug 97.9 0.00011 2.4E-09 62.1 9.6 104 27-137 118-228 (299)
281 cd01130 VirB11-like_ATPase Typ 97.9 4E-05 8.7E-10 60.0 6.3 49 26-77 10-58 (186)
282 PRK06217 hypothetical protein; 97.9 1.4E-05 3.1E-10 62.2 3.7 28 46-73 3-30 (183)
283 PRK08769 DNA polymerase III su 97.9 0.00013 2.7E-09 62.5 9.8 108 28-136 10-139 (319)
284 TIGR01420 pilT_fam pilus retra 97.9 0.00013 2.8E-09 62.6 9.9 103 33-141 113-224 (343)
285 PRK06090 DNA polymerase III su 97.9 0.00015 3.3E-09 62.0 10.3 107 29-136 10-134 (319)
286 KOG0482|consensus 97.9 1.1E-05 2.4E-10 72.9 3.4 94 46-143 377-472 (721)
287 COG2812 DnaX DNA polymerase II 97.8 2.5E-05 5.3E-10 70.8 5.5 102 28-137 22-146 (515)
288 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 1.7E-05 3.6E-10 61.1 3.8 25 47-71 2-26 (183)
289 PF13191 AAA_16: AAA ATPase do 97.8 1.7E-05 3.7E-10 60.3 3.7 50 31-80 9-63 (185)
290 KOG0481|consensus 97.8 2.7E-05 5.8E-10 70.6 5.4 93 46-142 366-460 (729)
291 PF03969 AFG1_ATPase: AFG1-lik 97.8 2.6E-05 5.7E-10 67.8 5.1 94 43-141 61-162 (362)
292 cd01428 ADK Adenylate kinase ( 97.8 1.9E-05 4.2E-10 61.0 3.8 27 46-72 1-27 (194)
293 TIGR00041 DTMP_kinase thymidyl 97.8 3.7E-05 7.9E-10 59.8 5.3 34 44-77 3-39 (195)
294 COG0563 Adk Adenylate kinase a 97.8 1.9E-05 4E-10 62.2 3.6 26 46-71 2-27 (178)
295 PHA02624 large T antigen; Prov 97.8 0.00013 2.7E-09 67.4 9.4 98 25-141 412-521 (647)
296 PRK06762 hypothetical protein; 97.8 2.6E-05 5.6E-10 59.3 4.3 31 45-75 3-33 (166)
297 TIGR01360 aden_kin_iso1 adenyl 97.8 2.4E-05 5.1E-10 60.1 4.0 27 46-72 5-31 (188)
298 TIGR01313 therm_gnt_kin carboh 97.8 1.8E-05 3.9E-10 60.0 3.3 25 47-71 1-25 (163)
299 cd02021 GntK Gluconate kinase 97.8 2.1E-05 4.6E-10 58.8 3.6 25 47-71 2-26 (150)
300 PRK04132 replication factor C 97.8 5.2E-05 1.1E-09 72.2 6.9 84 46-136 566-656 (846)
301 PRK06964 DNA polymerase III su 97.8 0.00022 4.7E-09 61.7 10.1 25 112-136 134-158 (342)
302 PRK10078 ribose 1,5-bisphospho 97.8 2.2E-05 4.9E-10 61.3 3.7 28 44-71 2-29 (186)
303 PRK05057 aroK shikimate kinase 97.8 2.7E-05 5.9E-10 60.4 4.0 30 44-73 4-33 (172)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 0.00031 6.8E-09 52.8 9.7 90 41-136 23-115 (144)
305 PRK05800 cobU adenosylcobinami 97.8 5.3E-05 1.1E-09 59.1 5.6 74 46-120 3-86 (170)
306 PF13238 AAA_18: AAA domain; P 97.8 2.3E-05 5E-10 56.1 3.3 22 47-68 1-22 (129)
307 PLN02165 adenylate isopentenyl 97.8 2.1E-05 4.6E-10 67.7 3.5 29 43-71 42-70 (334)
308 PRK02496 adk adenylate kinase; 97.7 2.9E-05 6.3E-10 60.2 3.8 28 46-73 3-30 (184)
309 PRK12723 flagellar biosynthesi 97.7 6.2E-05 1.3E-09 66.1 6.2 91 45-135 175-281 (388)
310 PRK08154 anaerobic benzoate ca 97.7 5.4E-05 1.2E-09 64.1 5.7 48 26-73 108-162 (309)
311 cd00071 GMPK Guanosine monopho 97.7 9.9E-05 2.1E-09 55.3 6.4 26 46-71 1-26 (137)
312 PRK05917 DNA polymerase III su 97.7 0.00026 5.6E-09 60.0 9.6 99 31-136 6-121 (290)
313 TIGR01448 recD_rel helicase, p 97.7 0.00019 4.1E-09 67.4 9.6 111 26-141 324-448 (720)
314 KOG0744|consensus 97.7 2E-05 4.4E-10 68.0 2.8 24 46-69 179-202 (423)
315 PRK13833 conjugal transfer pro 97.7 0.0002 4.4E-09 61.4 8.9 103 26-137 129-239 (323)
316 PRK14528 adenylate kinase; Pro 97.7 3.4E-05 7.5E-10 60.5 3.9 28 45-72 2-29 (186)
317 KOG0740|consensus 97.7 2.5E-05 5.3E-10 69.2 3.3 63 46-121 188-256 (428)
318 cd03246 ABCC_Protease_Secretio 97.7 0.00026 5.7E-09 54.5 8.7 96 40-135 24-140 (173)
319 PLN02199 shikimate kinase 97.7 9.3E-05 2E-09 63.0 6.6 43 31-73 89-131 (303)
320 KOG0990|consensus 97.7 3.2E-06 6.9E-11 72.4 -2.3 120 28-154 47-181 (360)
321 PF13245 AAA_19: Part of AAA d 97.7 5.4E-05 1.2E-09 51.7 4.2 25 44-68 9-35 (76)
322 TIGR02788 VirB11 P-type DNA tr 97.7 0.00038 8.2E-09 58.9 10.3 90 42-134 142-240 (308)
323 TIGR00767 rho transcription te 97.7 6.7E-05 1.4E-09 66.3 5.5 36 36-71 160-195 (415)
324 COG0542 clpA ATP-binding subun 97.7 0.0002 4.4E-09 67.6 9.0 89 46-143 193-304 (786)
325 PRK13948 shikimate kinase; Pro 97.7 4.7E-05 1E-09 60.2 4.1 30 44-73 10-39 (182)
326 PRK04182 cytidylate kinase; Pr 97.7 4.4E-05 9.5E-10 58.1 3.8 28 46-73 2-29 (180)
327 cd01124 KaiC KaiC is a circadi 97.7 7.4E-05 1.6E-09 57.3 5.0 32 47-78 2-36 (187)
328 TIGR01351 adk adenylate kinase 97.7 4.5E-05 9.7E-10 60.7 3.9 27 47-73 2-28 (210)
329 PTZ00088 adenylate kinase 1; P 97.7 4.3E-05 9.4E-10 62.4 3.8 29 45-73 7-35 (229)
330 KOG0058|consensus 97.7 0.00012 2.5E-09 68.3 7.0 37 32-68 482-518 (716)
331 PRK05973 replicative DNA helic 97.7 9.5E-05 2.1E-09 60.9 5.8 51 36-88 56-109 (237)
332 PRK13894 conjugal transfer ATP 97.7 0.00031 6.7E-09 60.1 9.1 103 27-137 134-243 (319)
333 PF13086 AAA_11: AAA domain; P 97.7 6.9E-05 1.5E-09 58.4 4.7 22 47-68 20-41 (236)
334 PF06745 KaiC: KaiC; InterPro 97.7 0.00022 4.8E-09 57.0 7.7 44 42-87 17-64 (226)
335 cd03230 ABC_DR_subfamily_A Thi 97.6 0.00028 6.2E-09 54.3 8.0 30 40-69 22-51 (173)
336 PF07931 CPT: Chloramphenicol 97.6 0.00015 3.1E-09 57.2 6.4 91 44-140 1-112 (174)
337 cd02019 NK Nucleoside/nucleoti 97.6 9.9E-05 2.1E-09 49.0 4.6 22 47-68 2-23 (69)
338 PF13521 AAA_28: AAA domain; P 97.6 4.8E-05 1.1E-09 57.8 3.5 26 47-73 2-27 (163)
339 cd00267 ABC_ATPase ABC (ATP-bi 97.6 9.4E-05 2E-09 55.9 5.1 93 41-135 22-124 (157)
340 cd03216 ABC_Carb_Monos_I This 97.6 0.00011 2.3E-09 56.4 5.3 94 40-135 22-126 (163)
341 cd00984 DnaB_C DnaB helicase C 97.6 0.00011 2.4E-09 59.0 5.6 49 36-86 5-57 (242)
342 PRK04841 transcriptional regul 97.6 0.00039 8.5E-09 65.3 10.1 103 33-136 21-148 (903)
343 TIGR02533 type_II_gspE general 97.6 0.00045 9.7E-09 62.2 10.0 109 26-141 226-340 (486)
344 COG3854 SpoIIIAA ncharacterize 97.6 0.00018 3.9E-09 59.8 6.8 91 46-138 139-244 (308)
345 COG1102 Cmk Cytidylate kinase 97.6 5.4E-05 1.2E-09 59.4 3.5 28 47-74 3-30 (179)
346 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00018 3.9E-09 55.3 6.3 95 40-136 23-136 (166)
347 cd00544 CobU Adenosylcobinamid 97.6 0.0002 4.4E-09 55.9 6.7 73 47-119 2-82 (169)
348 COG0467 RAD55 RecA-superfamily 97.6 0.00011 2.5E-09 60.1 5.4 52 34-87 12-67 (260)
349 smart00487 DEXDc DEAD-like hel 97.6 0.00052 1.1E-08 51.3 8.5 40 26-68 9-49 (201)
350 PRK14527 adenylate kinase; Pro 97.6 7.2E-05 1.6E-09 58.5 3.9 30 43-72 5-34 (191)
351 PRK06696 uridine kinase; Valid 97.6 0.00021 4.5E-09 57.5 6.7 31 46-76 24-57 (223)
352 PRK08233 hypothetical protein; 97.6 6.1E-05 1.3E-09 57.5 3.2 26 45-70 4-29 (182)
353 PRK15455 PrkA family serine pr 97.6 0.0001 2.3E-09 67.8 5.2 49 110-158 255-313 (644)
354 PRK00279 adk adenylate kinase; 97.6 7.6E-05 1.7E-09 59.5 3.8 28 46-73 2-29 (215)
355 cd03222 ABC_RNaseL_inhibitor T 97.6 6.6E-05 1.4E-09 59.0 3.4 92 40-134 21-114 (177)
356 cd03228 ABCC_MRP_Like The MRP 97.6 0.00053 1.2E-08 52.7 8.3 97 39-135 23-140 (171)
357 TIGR02858 spore_III_AA stage I 97.6 0.00026 5.7E-09 59.2 7.0 26 45-70 112-137 (270)
358 TIGR02173 cyt_kin_arch cytidyl 97.5 8.6E-05 1.9E-09 56.1 3.8 27 47-73 3-29 (171)
359 PF06309 Torsin: Torsin; Inte 97.5 0.00018 3.9E-09 54.1 5.4 41 28-68 35-77 (127)
360 PLN02674 adenylate kinase 97.5 0.00015 3.2E-09 60.0 5.4 28 44-71 31-58 (244)
361 PRK14722 flhF flagellar biosyn 97.5 0.00033 7.2E-09 61.3 7.5 87 43-133 136-240 (374)
362 smart00072 GuKc Guanylate kina 97.5 0.0002 4.4E-09 55.8 5.6 25 44-68 2-26 (184)
363 PF02367 UPF0079: Uncharacteri 97.5 0.00016 3.5E-09 54.0 4.7 37 35-71 6-42 (123)
364 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00018 3.9E-09 58.4 5.5 55 31-87 7-65 (237)
365 PRK06547 hypothetical protein; 97.5 9.9E-05 2.1E-09 57.7 3.7 28 46-73 17-44 (172)
366 cd03115 SRP The signal recogni 97.5 0.00082 1.8E-08 51.4 8.8 32 47-78 3-37 (173)
367 TIGR02538 type_IV_pilB type IV 97.5 0.0011 2.3E-08 60.8 10.9 111 26-141 300-414 (564)
368 PLN02200 adenylate kinase fami 97.5 0.00011 2.3E-09 60.2 3.9 26 46-71 45-70 (234)
369 PRK13851 type IV secretion sys 97.5 0.0002 4.4E-09 61.9 5.8 89 43-134 161-258 (344)
370 PRK01184 hypothetical protein; 97.5 0.00011 2.4E-09 56.8 3.7 27 46-73 3-29 (184)
371 PF00406 ADK: Adenylate kinase 97.5 0.0001 2.2E-09 55.4 3.3 23 49-71 1-23 (151)
372 cd03213 ABCG_EPDR ABCG transpo 97.5 0.00076 1.7E-08 53.0 8.3 35 34-68 25-59 (194)
373 cd02027 APSK Adenosine 5'-phos 97.5 0.00017 3.7E-09 54.7 4.4 22 47-68 2-23 (149)
374 TIGR03499 FlhF flagellar biosy 97.5 0.00045 9.8E-09 57.8 7.3 35 44-78 194-233 (282)
375 PF05729 NACHT: NACHT domain 97.5 0.00011 2.4E-09 54.6 3.2 23 46-68 2-24 (166)
376 PRK10436 hypothetical protein; 97.5 0.0015 3.3E-08 58.5 11.1 110 26-141 202-316 (462)
377 COG1936 Predicted nucleotide k 97.5 7.6E-05 1.7E-09 59.0 2.4 27 46-73 2-28 (180)
378 PRK14526 adenylate kinase; Pro 97.5 0.00013 2.7E-09 58.9 3.8 27 46-72 2-28 (211)
379 PRK07132 DNA polymerase III su 97.4 0.0015 3.2E-08 55.5 10.3 104 29-136 3-116 (299)
380 PRK04040 adenylate kinase; Pro 97.4 0.00014 3E-09 57.5 3.8 25 45-69 3-27 (188)
381 PHA02530 pseT polynucleotide k 97.4 0.00012 2.7E-09 60.7 3.6 24 45-68 3-26 (300)
382 PRK13975 thymidylate kinase; P 97.4 0.00013 2.8E-09 56.7 3.5 28 44-71 2-29 (196)
383 PF01926 MMR_HSR1: 50S ribosom 97.4 0.00018 3.9E-09 51.4 3.8 20 47-66 2-21 (116)
384 PRK05541 adenylylsulfate kinas 97.4 0.00013 2.8E-09 56.1 3.3 28 43-70 6-33 (176)
385 PRK10646 ADP-binding protein; 97.4 0.00041 8.8E-09 53.7 6.0 43 29-71 13-55 (153)
386 PF00625 Guanylate_kin: Guanyl 97.4 0.00027 5.8E-09 54.9 5.0 31 44-74 2-32 (183)
387 cd01672 TMPK Thymidine monopho 97.4 0.00028 6E-09 54.2 5.0 27 47-73 3-32 (200)
388 PRK00300 gmk guanylate kinase; 97.4 0.00014 3.1E-09 57.0 3.4 27 43-69 4-30 (205)
389 PRK09825 idnK D-gluconate kina 97.4 0.00018 4E-09 56.2 4.0 27 44-70 3-29 (176)
390 TIGR03819 heli_sec_ATPase heli 97.4 0.00099 2.2E-08 57.4 8.8 101 27-137 164-277 (340)
391 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00021 4.5E-09 58.2 4.4 23 47-69 2-24 (249)
392 PRK14529 adenylate kinase; Pro 97.4 0.00015 3.3E-09 59.1 3.5 28 46-73 2-29 (223)
393 cd02028 UMPK_like Uridine mono 97.4 0.00024 5.2E-09 55.5 4.4 32 47-78 2-36 (179)
394 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.00023 5E-09 58.8 4.4 38 41-78 33-73 (259)
395 PRK13900 type IV secretion sys 97.4 0.00048 1E-08 59.2 6.5 91 43-137 159-259 (332)
396 PRK13764 ATPase; Provisional 97.4 0.00035 7.7E-09 64.4 5.9 27 44-70 257-283 (602)
397 PRK00889 adenylylsulfate kinas 97.3 0.00029 6.2E-09 54.1 4.5 27 43-69 3-29 (175)
398 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.00031 6.7E-09 56.1 4.8 55 32-86 6-70 (235)
399 cd02023 UMPK Uridine monophosp 97.3 0.00033 7.1E-09 54.9 4.8 23 47-69 2-24 (198)
400 TIGR02237 recomb_radB DNA repa 97.3 0.0004 8.7E-09 54.6 5.3 44 43-87 11-57 (209)
401 TIGR02525 plasmid_TraJ plasmid 97.3 0.0011 2.4E-08 57.9 8.4 94 44-141 149-254 (372)
402 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.00038 8.2E-09 55.6 5.1 54 31-86 6-63 (229)
403 KOG0735|consensus 97.3 0.00045 9.7E-09 64.8 6.2 74 41-122 428-506 (952)
404 cd01394 radB RadB. The archaea 97.3 0.00035 7.6E-09 55.4 4.9 47 31-77 5-55 (218)
405 PRK05480 uridine/cytidine kina 97.3 0.00033 7.1E-09 55.4 4.6 25 45-69 7-31 (209)
406 TIGR02768 TraA_Ti Ti-type conj 97.3 0.00054 1.2E-08 64.6 6.6 109 26-142 353-473 (744)
407 PF00485 PRK: Phosphoribulokin 97.3 0.00022 4.8E-09 56.0 3.4 23 47-69 2-24 (194)
408 PRK11776 ATP-dependent RNA hel 97.3 0.0019 4.1E-08 57.0 9.6 31 26-60 27-57 (460)
409 PRK09361 radB DNA repair and r 97.3 0.00054 1.2E-08 54.6 5.6 51 28-78 6-60 (225)
410 cd01122 GP4d_helicase GP4d_hel 97.3 0.00013 2.8E-09 59.7 2.0 50 28-77 14-67 (271)
411 KOG1970|consensus 97.3 0.00037 8.1E-09 63.6 5.0 33 44-76 110-142 (634)
412 TIGR00235 udk uridine kinase. 97.3 0.0002 4.3E-09 56.8 2.9 27 44-70 6-32 (207)
413 PRK10875 recD exonuclease V su 97.3 0.00099 2.1E-08 61.7 7.7 31 111-141 266-297 (615)
414 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.0013 2.8E-08 61.1 8.5 35 34-68 495-529 (710)
415 TIGR02655 circ_KaiC circadian 97.3 0.00048 1E-08 61.7 5.5 55 31-87 7-66 (484)
416 COG1116 TauB ABC-type nitrate/ 97.2 0.00018 3.9E-09 59.6 2.5 36 34-69 19-54 (248)
417 TIGR02524 dot_icm_DotB Dot/Icm 97.2 0.0011 2.5E-08 57.5 7.5 27 43-69 133-159 (358)
418 TIGR03375 type_I_sec_LssB type 97.2 0.0015 3.2E-08 60.6 8.8 36 33-68 480-515 (694)
419 PRK05703 flhF flagellar biosyn 97.2 0.0018 3.8E-08 57.4 8.8 88 44-135 221-326 (424)
420 PF02562 PhoH: PhoH-like prote 97.2 0.0012 2.6E-08 53.3 7.1 112 27-142 6-152 (205)
421 KOG1942|consensus 97.2 0.00039 8.5E-09 59.8 4.4 47 29-75 48-95 (456)
422 PRK14738 gmk guanylate kinase; 97.2 0.00019 4.1E-09 57.2 2.4 25 43-67 12-36 (206)
423 PF01637 Arch_ATPase: Archaeal 97.2 0.00039 8.5E-09 54.2 4.1 38 32-70 9-46 (234)
424 cd01121 Sms Sms (bacterial rad 97.2 0.0011 2.4E-08 57.8 7.2 93 28-122 65-170 (372)
425 COG1419 FlhF Flagellar GTP-bin 97.2 0.001 2.2E-08 58.7 7.0 89 44-136 203-309 (407)
426 COG0324 MiaA tRNA delta(2)-iso 97.2 0.001 2.2E-08 56.8 6.7 28 46-73 5-32 (308)
427 KOG0479|consensus 97.2 0.00048 1E-08 63.4 5.0 94 46-143 336-431 (818)
428 PF08477 Miro: Miro-like prote 97.2 0.00032 6.9E-09 49.8 3.1 23 47-69 2-24 (119)
429 PRK08533 flagellar accessory p 97.2 0.00076 1.7E-08 54.8 5.7 45 41-87 21-68 (230)
430 PLN02459 probable adenylate ki 97.2 0.00037 8E-09 58.2 3.9 27 46-72 31-57 (261)
431 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.00081 1.8E-08 53.7 5.7 52 34-87 5-60 (224)
432 PHA02653 RNA helicase NPH-II; 97.2 0.0023 5.1E-08 59.8 9.5 27 36-62 171-197 (675)
433 PRK12608 transcription termina 97.2 0.00061 1.3E-08 59.7 5.3 60 29-88 118-183 (380)
434 TIGR01447 recD exodeoxyribonuc 97.2 0.0011 2.4E-08 61.0 7.2 32 111-142 260-292 (586)
435 COG4088 Predicted nucleotide k 97.2 0.00028 6E-09 57.8 2.8 26 47-72 4-29 (261)
436 PRK04328 hypothetical protein; 97.2 0.00077 1.7E-08 55.3 5.5 54 31-86 9-66 (249)
437 PF03193 DUF258: Protein of un 97.2 0.00044 9.5E-09 53.9 3.8 39 27-69 22-60 (161)
438 COG0802 Predicted ATPase or ki 97.2 0.001 2.2E-08 51.3 5.8 43 29-71 10-52 (149)
439 PRK12339 2-phosphoglycerate ki 97.2 0.00045 9.7E-09 55.2 4.0 27 45-71 4-30 (197)
440 TIGR00750 lao LAO/AO transport 97.2 0.00099 2.1E-08 56.1 6.2 49 30-78 20-71 (300)
441 TIGR01967 DEAH_box_HrpA ATP-de 97.2 0.0028 6E-08 63.0 10.1 37 34-70 72-108 (1283)
442 COG4525 TauB ABC-type taurine 97.2 0.00039 8.4E-09 56.7 3.5 47 31-77 18-64 (259)
443 KOG0060|consensus 97.2 0.00041 8.9E-09 63.6 4.0 56 7-68 430-485 (659)
444 PF03029 ATP_bind_1: Conserved 97.1 0.00051 1.1E-08 56.3 4.0 34 49-82 1-37 (238)
445 PRK09376 rho transcription ter 97.1 0.00055 1.2E-08 60.5 4.5 34 36-69 161-194 (416)
446 PRK14021 bifunctional shikimat 97.1 0.00045 9.8E-09 62.9 4.1 30 45-74 7-36 (542)
447 PRK09270 nucleoside triphospha 97.1 0.00079 1.7E-08 54.3 5.1 26 45-70 34-59 (229)
448 PRK14974 cell division protein 97.1 0.0013 2.9E-08 56.6 6.7 23 46-68 142-164 (336)
449 PRK11889 flhF flagellar biosyn 97.1 0.0016 3.5E-08 57.8 7.3 91 45-135 242-347 (436)
450 PRK08356 hypothetical protein; 97.1 0.00049 1.1E-08 54.1 3.7 25 46-71 7-31 (195)
451 cd02022 DPCK Dephospho-coenzym 97.1 0.00052 1.1E-08 53.3 3.7 25 47-72 2-26 (179)
452 PF01745 IPT: Isopentenyl tran 97.1 0.00056 1.2E-08 56.0 4.0 29 46-74 3-31 (233)
453 PF10662 PduV-EutP: Ethanolami 97.1 0.00037 8E-09 53.4 2.7 22 45-66 2-23 (143)
454 COG1373 Predicted ATPase (AAA+ 97.1 0.0055 1.2E-07 53.8 10.4 90 34-138 26-121 (398)
455 PRK05537 bifunctional sulfate 97.1 0.00068 1.5E-08 62.2 4.9 43 28-70 375-418 (568)
456 COG1061 SSL2 DNA or RNA helica 97.1 0.0048 1E-07 54.8 10.1 113 26-138 37-174 (442)
457 cd04163 Era Era subfamily. Er 97.1 0.00097 2.1E-08 48.6 4.8 21 46-66 5-25 (168)
458 PRK07667 uridine kinase; Provi 97.1 0.0015 3.2E-08 51.5 6.1 33 46-78 19-54 (193)
459 PRK11545 gntK gluconate kinase 97.1 0.00038 8.2E-09 53.6 2.7 22 50-71 1-22 (163)
460 TIGR01526 nadR_NMN_Atrans nico 97.1 0.00053 1.1E-08 58.6 3.8 30 44-73 162-191 (325)
461 PRK08099 bifunctional DNA-bind 97.1 0.00057 1.2E-08 60.1 3.9 28 45-72 220-247 (399)
462 PRK12727 flagellar biosynthesi 97.1 0.0047 1E-07 56.5 9.9 83 43-125 349-443 (559)
463 COG1485 Predicted ATPase [Gene 97.1 0.00053 1.1E-08 59.5 3.6 84 45-133 66-156 (367)
464 KOG0732|consensus 97.1 0.0011 2.3E-08 64.4 5.9 88 45-142 300-410 (1080)
465 COG2804 PulE Type II secretory 97.1 0.0058 1.3E-07 55.3 10.3 111 26-142 242-357 (500)
466 PF05272 VirE: Virulence-assoc 97.0 0.00047 1E-08 55.2 3.0 83 46-151 54-138 (198)
467 TIGR02236 recomb_radA DNA repa 97.0 0.0015 3.2E-08 54.9 6.2 56 31-86 81-146 (310)
468 PRK06067 flagellar accessory p 97.0 0.0011 2.4E-08 53.3 5.1 50 29-78 9-62 (234)
469 PF00005 ABC_tran: ABC transpo 97.0 0.00045 9.7E-09 50.5 2.6 28 42-69 9-36 (137)
470 COG2274 SunT ABC-type bacterio 97.0 0.0029 6.4E-08 59.5 8.6 36 34-69 489-524 (709)
471 TIGR00017 cmk cytidylate kinas 97.0 0.00067 1.4E-08 54.9 3.8 28 46-73 4-31 (217)
472 COG4619 ABC-type uncharacteriz 97.0 0.00048 1E-08 55.0 2.9 30 40-69 25-54 (223)
473 TIGR00174 miaA tRNA isopenteny 97.0 0.00072 1.6E-08 57.2 4.2 26 47-72 2-27 (287)
474 PRK14730 coaE dephospho-CoA ki 97.0 0.00069 1.5E-08 53.7 3.8 28 46-73 3-30 (195)
475 PRK05986 cob(I)alamin adenolsy 97.0 0.0064 1.4E-07 48.7 9.3 36 44-79 22-60 (191)
476 PRK04301 radA DNA repair and r 97.0 0.0015 3.2E-08 55.3 6.0 59 29-87 86-154 (317)
477 KOG0927|consensus 97.0 0.0017 3.6E-08 59.3 6.6 49 107-160 524-573 (614)
478 PRK00771 signal recognition pa 97.0 0.0018 4E-08 57.7 6.8 32 46-77 97-131 (437)
479 PRK13973 thymidylate kinase; P 97.0 0.0012 2.5E-08 52.9 5.0 43 44-86 3-48 (213)
480 COG3839 MalK ABC-type sugar tr 97.0 0.0005 1.1E-08 59.4 3.0 30 40-69 25-54 (338)
481 PRK06761 hypothetical protein; 97.0 0.00099 2.1E-08 56.2 4.7 31 45-75 4-34 (282)
482 PRK09302 circadian clock prote 97.0 0.0016 3.4E-08 58.6 6.2 59 27-87 13-76 (509)
483 cd03281 ABC_MSH5_euk MutS5 hom 97.0 0.00098 2.1E-08 53.6 4.4 21 45-65 30-50 (213)
484 PLN03130 ABC transporter C fam 97.0 0.0031 6.8E-08 64.1 8.9 36 33-68 1254-1289(1622)
485 COG1120 FepC ABC-type cobalami 97.0 0.00025 5.4E-09 59.2 1.0 30 40-69 24-53 (258)
486 cd04160 Arfrp1 Arfrp1 subfamil 97.0 0.00064 1.4E-08 50.7 3.1 23 46-68 1-23 (167)
487 cd03227 ABC_Class2 ABC-type Cl 97.0 0.0021 4.5E-08 49.2 5.9 24 45-68 22-45 (162)
488 PF00931 NB-ARC: NB-ARC domain 97.0 0.0012 2.6E-08 53.8 4.9 56 31-86 5-66 (287)
489 PRK06851 hypothetical protein; 97.0 0.0013 2.9E-08 57.4 5.4 49 31-81 203-254 (367)
490 PF00448 SRP54: SRP54-type pro 97.0 0.00067 1.4E-08 54.1 3.3 32 46-77 3-37 (196)
491 KOG0922|consensus 97.0 0.0029 6.3E-08 58.6 7.8 106 32-137 54-193 (674)
492 KOG0736|consensus 97.0 0.00097 2.1E-08 63.0 4.7 33 46-78 433-465 (953)
493 PF08433 KTI12: Chromatin asso 97.0 0.00086 1.9E-08 56.1 4.1 23 47-69 4-26 (270)
494 PF01583 APS_kinase: Adenylyls 97.0 0.0012 2.5E-08 51.3 4.4 34 44-77 2-38 (156)
495 cd01393 recA_like RecA is a b 97.0 0.0014 3.1E-08 51.9 5.0 55 32-86 6-70 (226)
496 PRK13808 adenylate kinase; Pro 97.0 0.00078 1.7E-08 58.1 3.7 27 46-72 2-28 (333)
497 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0048 1E-07 48.0 7.7 34 46-79 4-40 (159)
498 PF13555 AAA_29: P-loop contai 96.9 0.0011 2.3E-08 43.9 3.4 25 44-68 23-47 (62)
499 cd01673 dNK Deoxyribonucleosid 96.9 0.00088 1.9E-08 52.1 3.6 25 47-71 2-26 (193)
500 PRK13826 Dtr system oriT relax 96.9 0.0022 4.8E-08 62.8 7.0 111 25-142 381-502 (1102)
No 1
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.95 E-value=1.9e-27 Score=202.39 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=110.8
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe--ecCe--EEEeccHHHHHhhcC
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI--VNGT--AIYYDQSAVRAAIEG 111 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~--~~G~--~~~~~gpl~~A~~~G 111 (162)
.++.++..+++++|+||||||||++++++|+.+|+|+.+++++++++..||+|...+ ++|. +.|++||+..|+++|
T Consensus 56 ~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g 135 (327)
T TIGR01650 56 AICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHN 135 (327)
T ss_pred HHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCC
Confidence 355555568899999999999999999999999999999999999999999997554 3553 899999999999999
Q ss_pred cEEEEeCCCCCCccHHHHHHHhhc-CCeEEEcC-CcEEecCcchHhhhhh
Q psy4122 112 RVLILEGIEKAERNVLPVLNNLLE-NREMHLED-GRFLVSASTYDKLLQV 159 (162)
Q Consensus 112 ~vlllDEId~a~~~v~~~L~~lle-~r~l~l~~-g~~i~~~~~f~~~~~~ 159 (162)
.|+++||||+++|+++++|+++|| +|++++++ ++.+.+||+|+.++=+
T Consensus 136 ~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~ 185 (327)
T TIGR01650 136 VALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATA 185 (327)
T ss_pred eEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEee
Confidence 999999999999999999999999 57999986 7777799999988743
No 2
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.93 E-value=7.2e-26 Score=186.83 Aligned_cols=132 Identities=18% Similarity=0.160 Sum_probs=115.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe-------------
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI------------- 92 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~------------- 92 (162)
.|+.+.+.++.++.....+.|++|+||||||||++|+++|+.+|.|+..++|+++++.+|++|.+.-
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~ 82 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHN 82 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHH
Confidence 4778888888888888889999999999999999999999999999999999999999999985321
Q ss_pred -----ecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC----CcEEecCcchHhhh
Q psy4122 93 -----VNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED----GRFLVSASTYDKLL 157 (162)
Q Consensus 93 -----~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~----g~~i~~~~~f~~~~ 157 (162)
......|.+||+..|+++|++|+|||||++++++++.|+++||+|.+.+++ +..+..|++|+.+.
T Consensus 83 ~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIa 156 (262)
T TIGR02640 83 VVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIF 156 (262)
T ss_pred hhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEE
Confidence 124568999999999999999999999999999999999999999999986 35666888887653
No 3
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.93 E-value=7.8e-27 Score=173.77 Aligned_cols=101 Identities=37% Similarity=0.487 Sum_probs=90.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCcc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERN 125 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~ 125 (162)
||+|+||||||||++|+.+|+.++.++..++++.+++.+||+|.+...++.+.|.+|++++|+++|.|++|||||+++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 69999999999999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEEcCCcE
Q psy4122 126 VLPVLNNLLENREMHLEDGRF 146 (162)
Q Consensus 126 v~~~L~~lle~r~l~l~~g~~ 146 (162)
+++.|++++|++++.++++..
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~ 101 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGE 101 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSS
T ss_pred HHHHHHHHHhhCcccccCCCc
Confidence 999999999999999886443
No 4
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.90 E-value=7.2e-24 Score=203.57 Aligned_cols=152 Identities=16% Similarity=0.197 Sum_probs=135.1
Q ss_pred cceeceeeeecccCCCC-------CCHHHHHHHHHHHHhc-CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccC
Q psy4122 9 EYVRFTLIYLFSVNTDA-------LTQDWLSHLRWILQKD-NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRD 80 (162)
Q Consensus 9 ~y~~~~~~~~~~~~~~~-------~~~~~~~~L~~i~~~~-~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~ 80 (162)
.|+.||+||...++... +||-+-..+-.+..+. ...-|+|+.||+.+|||+++..+|..+|+.+.+++-|+.
T Consensus 845 ~yi~f~hyw~~~g~~~veeq~hyIiTPfVqkn~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEH 924 (4600)
T COG5271 845 SYIAFCHYWKHGGSFPVEEQEHYIITPFVQKNYLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEH 924 (4600)
T ss_pred cHHHHHHHHHhcCCCchhhcceeEecHHHHHHHHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCccc
Confidence 59999999988766553 6898888665555543 355699999999999999999999999999999999999
Q ss_pred CChhhhcceeEe-ecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc-CCeEEEcC-CcEEecCcchHhhh
Q psy4122 81 TTEADIKQRREI-VNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLE-NREMHLED-GRFLVSASTYDKLL 157 (162)
Q Consensus 81 ~~~~dL~g~~~~-~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle-~r~l~l~~-g~~i~~~~~f~~~~ 157 (162)
|+.++.+|.+.. .+|+..|++|.|+.|+|+|.|++|||+|.||.+|+++||++|| +|++.||+ -..++|||+|+.|+
T Consensus 925 TdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFA 1004 (4600)
T COG5271 925 TDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFA 1004 (4600)
T ss_pred chHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEe
Confidence 999999998765 5699999999999999999999999999999999999999998 58999997 78899999999988
Q ss_pred hhh
Q psy4122 158 QVE 160 (162)
Q Consensus 158 ~~~ 160 (162)
-|.
T Consensus 1005 TQN 1007 (4600)
T COG5271 1005 TQN 1007 (4600)
T ss_pred ecC
Confidence 653
No 5
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.88 E-value=2.1e-22 Score=151.18 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=77.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEee--cCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIV--NGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~--~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
|+||+|+||+|||++|+++|+.+|..+.++++++|+.++||+|..... .+.+.|.+||+. .+++++|||||++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-----~~ill~DEiNrap 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-----TNILLADEINRAP 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT------SSEEEEETGGGS-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-----hceeeecccccCC
Confidence 799999999999999999999999999999999999999999976554 588999999965 4799999999999
Q ss_pred ccHHHHHHHhhcCCeEEE-------cCCcEEecCcc
Q psy4122 124 RNVLPVLNNLLENREMHL-------EDGRFLVSAST 152 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l-------~~g~~i~~~~~ 152 (162)
|.++++|++++++|++.+ |+...++++.|
T Consensus 76 pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 76 PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-
T ss_pred HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecC
Confidence 999999999999998875 45666666655
No 6
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.87 E-value=2e-22 Score=193.89 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee--EeecCeEEEeccHH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR--EIVNGTAIYYDQSA 104 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~--~~~~G~~~~~~gpl 104 (162)
+|.+...+++++.+...++|++|.|.||+|||+|+.++|+.+|..+.++++++.|+.-||.|.. ..++|.+.|.|.|+
T Consensus 1526 spTT~~Nl~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapf 1605 (4600)
T COG5271 1526 SPTTTVNLRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPF 1605 (4600)
T ss_pred CCchHHhHHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHH
Confidence 7999999999999999999999999999999999999999999999999999999999999944 34679999999999
Q ss_pred HHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC-CeEEEcC-CcEEecCcchHhhhhh
Q psy4122 105 VRAAIEGRVLILEGIEKAERNVLPVLNNLLEN-REMHLED-GRFLVSASTYDKLLQV 159 (162)
Q Consensus 105 ~~A~~~G~vlllDEId~a~~~v~~~L~~lle~-r~l~l~~-g~~i~~~~~f~~~~~~ 159 (162)
+.|||.|+|++|||+|.|+.+|++.||..||+ |+..||+ ...+..||+|+-|+-|
T Consensus 1606 L~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaq 1662 (4600)
T COG5271 1606 LHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQ 1662 (4600)
T ss_pred HHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeec
Confidence 99999999999999999999999999999996 5789997 7788899999987644
No 7
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.87 E-value=2.6e-22 Score=170.12 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEee-----cCeEEEeccHH
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIV-----NGTAIYYDQSA 104 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~-----~G~~~~~~gpl 104 (162)
..+.+..++.++..+.|++|.||||||||.+|+++|+.++.++.+++|+++++++|++|.+.+. .+.+.|.+||+
T Consensus 29 ~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl 108 (329)
T COG0714 29 DEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPL 108 (329)
T ss_pred cHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCc
Confidence 3445566667777899999999999999999999999999999999999999999999966543 78899999999
Q ss_pred HHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 105 VRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 105 ~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
..+++ +++++||||+++|+++++|+++|+++++++++
T Consensus 109 ~~~~~--~ill~DEInra~p~~q~aLl~~l~e~~vtv~~ 145 (329)
T COG0714 109 FAAVR--VILLLDEINRAPPEVQNALLEALEERQVTVPG 145 (329)
T ss_pred ccccc--eEEEEeccccCCHHHHHHHHHHHhCcEEEECC
Confidence 99887 89999999999999999999999999998875
No 8
>PHA02244 ATPase-like protein
Probab=99.87 E-value=6.5e-22 Score=170.90 Aligned_cols=140 Identities=15% Similarity=0.165 Sum_probs=112.2
Q ss_pred eceeeeecccCCCCCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeE
Q psy4122 12 RFTLIYLFSVNTDALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRRE 91 (162)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~ 91 (162)
+.....-+.-+....+|.+......+......+.|+||+||||||||++|+++|+.++.|+.+++. .++..++.|.
T Consensus 87 ~~~~l~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~--l~d~~~L~G~-- 162 (383)
T PHA02244 87 PAGDISGIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNA--IMDEFELKGF-- 162 (383)
T ss_pred CcCchhhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEec--ChHHHhhccc--
Confidence 334444444444455677777777777777788999999999999999999999999999887763 3445566652
Q ss_pred eecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcCCcEEecCcchHhhh
Q psy4122 92 IVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLEDGRFLVSASTYDKLL 157 (162)
Q Consensus 92 ~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~g~~i~~~~~f~~~~ 157 (162)
.++...|++||+++|+++|++|+||||++++++++..|+++++++.+.+.++ .+.+|++|+.++
T Consensus 163 -i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~-~i~~h~~FRlIA 226 (383)
T PHA02244 163 -IDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADE-RVTAHEDFRVIS 226 (383)
T ss_pred -ccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCc-EEecCCCEEEEE
Confidence 2333479999999999999999999999999999999999999998888755 577888888775
No 9
>KOG1808|consensus
Probab=99.85 E-value=3.1e-21 Score=189.29 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=135.4
Q ss_pred eceeeeecccCCC-------CCCHHHHHHHHHHHHhcCCC-CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCCh
Q psy4122 12 RFTLIYLFSVNTD-------ALTQDWLSHLRWILQKDNMS-QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTE 83 (162)
Q Consensus 12 ~~~~~~~~~~~~~-------~~~~~~~~~L~~i~~~~~~g-~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~ 83 (162)
+|+++|+.++... .+|+.....+..|..+...| .|+||.||+|||||++++.+|+.+|+.+.+++.|.+|+.
T Consensus 400 ~~~~~~i~~gs~~~~~~~~~i~T~~vq~~la~~~~a~~~~~~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~ 479 (1856)
T KOG1808|consen 400 RFEGYWIPSGSELTSEATHYIITPRVQKNLADLARAISSGKFPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDL 479 (1856)
T ss_pred ccceeecCCCCccccccceeeccHHHHHHHHHHHHHHhcCCCCeEEecCcCcCchhHHHHHHHHhccCceehhccccchH
Confidence 7899999887544 37899999999999888877 599999999999999999999999999999999999999
Q ss_pred hhhccee-EeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC-CeEEEcC-CcEEecCcchHhhhhhh
Q psy4122 84 ADIKQRR-EIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN-REMHLED-GRFLVSASTYDKLLQVE 160 (162)
Q Consensus 84 ~dL~g~~-~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~-r~l~l~~-g~~i~~~~~f~~~~~~~ 160 (162)
.+++|++ ...+|+..|.+|+++.|+++|.|+++||+|.|+.+++++|++++++ |++.+|+ -+.+.+|++|..++++.
T Consensus 480 qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn 559 (1856)
T KOG1808|consen 480 QEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQN 559 (1856)
T ss_pred HHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhcc
Confidence 9999955 4578999999999999999999999999999999999999999997 9999998 55677888899888764
No 10
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=1.1e-17 Score=136.31 Aligned_cols=99 Identities=13% Similarity=0.251 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhcCC-C---CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 28 QDWLSHLRWILQKDNM-S---QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~-g---~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
++.+..++-++++... + .|++|+||||+||||||+.+|+.+|.++...+...-....||. .
T Consensus 30 ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~---------------~ 94 (233)
T PF05496_consen 30 EHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLA---------------A 94 (233)
T ss_dssp HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHH---------------H
T ss_pred HHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHH---------------H
Confidence 6677777766665432 2 3799999999999999999999999998877664333356665 3
Q ss_pred HHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
++..+.++.||+||||||+++.+++.|++.+|++.+.+
T Consensus 95 il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idi 132 (233)
T PF05496_consen 95 ILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDI 132 (233)
T ss_dssp HHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEE
T ss_pred HHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEE
Confidence 45567889999999999999999999999999999855
No 11
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.60 E-value=1.1e-15 Score=122.99 Aligned_cols=113 Identities=20% Similarity=0.270 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEE--EEeccCCCh------hhhcceeEe------------ecCeEEEecc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEY--ICLSRDTTE------ADIKQRREI------------VNGTAIYYDQ 102 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~--v~~~~~~~~------~dL~g~~~~------------~~G~~~~~~g 102 (162)
.++|+||+||||||||++|+.++.++...... +....-.+. ..++..+.+ .+|...+.+|
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG 100 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG 100 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcC
Confidence 46899999999999999999999887532111 111111001 111111111 1233355666
Q ss_pred HHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc-CCcEEecCcchHhhh
Q psy4122 103 SAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLE-DGRFLVSASTYDKLL 157 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~-~g~~i~~~~~f~~~~ 157 (162)
-+ +..|+|||+|||++.+++++++.|.+.+|+|++.+. .|..+.-+.+|..++
T Consensus 101 ei--slAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~ 154 (206)
T PF01078_consen 101 EI--SLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVA 154 (206)
T ss_dssp CG--GGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEE
T ss_pred HH--HHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEE
Confidence 55 556999999999999999999999999999999997 488888888887653
No 12
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.60 E-value=2.7e-15 Score=130.31 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH--h-
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA--A- 108 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A--~- 108 (162)
.-|++|+++.... +++|+|||||||||||+.+|..++.+++.++.. .....|+.. .+-+| .
T Consensus 37 ~~lrr~v~~~~l~-SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv-~~gvkdlr~--------------i~e~a~~~~ 100 (436)
T COG2256 37 KPLRRAVEAGHLH-SMILWGPPGTGKTTLARLIAGTTNAAFEALSAV-TSGVKDLRE--------------IIEEARKNR 100 (436)
T ss_pred chHHHHHhcCCCc-eeEEECCCCCCHHHHHHHHHHhhCCceEEeccc-cccHHHHHH--------------HHHHHHHHH
Confidence 3577888876655 899999999999999999999999998877664 224566652 22222 1
Q ss_pred --hcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 109 --IEGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 109 --~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
....+|++|||+|++...|+.|++.+|+|.+++.+
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIG 137 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIG 137 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEe
Confidence 22479999999999999999999999999999865
No 13
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=4.4e-15 Score=137.93 Aligned_cols=99 Identities=21% Similarity=0.291 Sum_probs=84.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC---CceEEEEec---cCCChhhhcceeEeecCeEEEecc-HHHHHhhcC--cEEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLS---RDTTEADIKQRREIVNGTAIYYDQ-SAVRAAIEG--RVLIL 116 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~---~~~~~~dL~g~~~~~~G~~~~~~g-pl~~A~~~G--~vlll 116 (162)
..|+.||+|||||.||+++|..+. ..+.++.++ +..+.+.|+|. ..|...|.+| -|++|+|+. .|++|
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGa---PPGYVGyeeGG~LTEaVRr~PySViLl 599 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGA---PPGYVGYEEGGQLTEAVRRKPYSVILL 599 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCC---CCCCceeccccchhHhhhcCCCeEEEe
Confidence 368899999999999999999886 678888887 45568889984 5666666664 578999876 59999
Q ss_pred eCCCCCCccHHHHHHHhhcCCeEEEcCCcEE
Q psy4122 117 EGIEKAERNVLPVLNNLLENREMHLEDGRFL 147 (162)
Q Consensus 117 DEId~a~~~v~~~L~~lle~r~l~l~~g~~i 147 (162)
|||.+|+|+|++.|+++||+|+++-..|+.+
T Consensus 600 DEIEKAHpdV~nilLQVlDdGrLTD~~Gr~V 630 (786)
T COG0542 600 DEIEKAHPDVFNLLLQVLDDGRLTDGQGRTV 630 (786)
T ss_pred chhhhcCHHHHHHHHHHhcCCeeecCCCCEE
Confidence 9999999999999999999999998877665
No 14
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.58 E-value=6.5e-15 Score=123.48 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhcCCC----CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 28 QDWLSHLRWILQKDNMS----QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g----~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
+...++|+-.+++...+ .|+||+||||.||||||..+|..+|..+...+...--.+.||. .
T Consensus 32 ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDla---------------a 96 (332)
T COG2255 32 EKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLA---------------A 96 (332)
T ss_pred HHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHH---------------H
Confidence 67888888777664422 3899999999999999999999999998877666554577776 5
Q ss_pred HHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
++..+.+|.|++||||||+++.+-+.|++.||+-++-+
T Consensus 97 iLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI 134 (332)
T COG2255 97 ILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDI 134 (332)
T ss_pred HHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEE
Confidence 67778999999999999999999999999999988754
No 15
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.58 E-value=3.4e-15 Score=127.84 Aligned_cols=95 Identities=16% Similarity=0.230 Sum_probs=75.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh-------CCceE------------------------EEEeccCCChhhhcceeE--
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT-------QREVE------------------------YICLSRDTTEADIKQRRE-- 91 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l-------g~p~~------------------------~v~~~~~~~~~dL~g~~~-- 91 (162)
.++||.|+||+|||++|+.+|.++ +.|+. .++++.+++.+.|+|...
T Consensus 30 ~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~ 109 (334)
T PRK13407 30 GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIE 109 (334)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhh
Confidence 599999999999999999999998 32211 122445556666777432
Q ss_pred --eecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 92 --IVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 92 --~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
+..|.+.+++|++.+| ++|+|++||||++++++++.|.++|+++++.+
T Consensus 110 ~~l~~g~~~~~~G~l~~A--~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 110 RALTRGEKAFEPGLLARA--NRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV 159 (334)
T ss_pred hhhhcCCeeecCCceEEc--CCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence 3468899999998654 78999999999999999999999999998755
No 16
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.56 E-value=2.3e-14 Score=126.76 Aligned_cols=105 Identities=19% Similarity=0.187 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-----ceEEEEeccCCChhhhcceeEeecCeEEEeccHHHH-
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-----EVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVR- 106 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-----p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~- 106 (162)
.++.++..+..+++++|+||||||||++|+++|..++. .+..+++|...+.+|+++...-.+....+.+|++.+
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~ 262 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNF 262 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHH
Confidence 34455555667899999999999999999999988753 355788999999999985322223457788998743
Q ss_pred ---Hhh---cCcEEEEeCCCCCCcc-HHHHHHHhhcCC
Q psy4122 107 ---AAI---EGRVLILEGIEKAERN-VLPVLNNLLENR 137 (162)
Q Consensus 107 ---A~~---~G~vlllDEId~a~~~-v~~~L~~lle~r 137 (162)
|.. ++.+|+||||||++.+ +...|.++||++
T Consensus 263 ~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~ 300 (459)
T PRK11331 263 CQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHD 300 (459)
T ss_pred HHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcccc
Confidence 332 3579999999999976 588889999853
No 17
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.55 E-value=7.8e-15 Score=114.68 Aligned_cols=94 Identities=26% Similarity=0.261 Sum_probs=66.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCC----ceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQR----EVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEK 121 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~----p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~ 121 (162)
+++|.||+|||||.+|+++|+.+.. ++.++.++.-++..+.... + ....... +......+++||+||||+|
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~--~-~~l~~~~--~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESS--V-SKLLGSP--PGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCH--C-HHHHHHT--TCHHHHHHHTEEEEETGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhh--h-hhhhhcc--cceeeccchhhhhhHHHhh
Confidence 6899999999999999999999995 7888888754442111100 0 0000000 1112345667999999999
Q ss_pred CCc-----------cHHHHHHHhhcCCeEEEcCC
Q psy4122 122 AER-----------NVLPVLNNLLENREMHLEDG 144 (162)
Q Consensus 122 a~~-----------~v~~~L~~lle~r~l~l~~g 144 (162)
+++ +|++.|++++|++.+.-..|
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g 113 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYG 113 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTC
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccc
Confidence 999 99999999999999986655
No 18
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.54 E-value=2e-14 Score=128.16 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=78.9
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC--ceEEEEeccCCChhhhcceeEe----ecCeE-EEeccHH
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR--EVEYICLSRDTTEADIKQRREI----VNGTA-IYYDQSA 104 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~--p~~~v~~~~~~~~~dL~g~~~~----~~G~~-~~~~gpl 104 (162)
+.++.++.+...+.|+||+||||||||++|+.+|...+. ++....+. -++++||+|...+ ..|.+ .+..|++
T Consensus 27 ~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~-fttp~DLfG~l~i~~~~~~g~f~r~~~G~L 105 (498)
T PRK13531 27 HAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR-FSTPEEVFGPLSIQALKDEGRYQRLTSGYL 105 (498)
T ss_pred HHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeee-ecCcHHhcCcHHHhhhhhcCchhhhcCCcc
Confidence 445566667778999999999999999999999998764 44444443 1257799884322 24554 3555654
Q ss_pred HHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 105 VRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 105 ~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..| .++++|||+++++.+++.|+++|++|.++.
T Consensus 106 ~~A----~lLfLDEI~rasp~~QsaLLeam~Er~~t~ 138 (498)
T PRK13531 106 PEA----EIVFLDEIWKAGPAILNTLLTAINERRFRN 138 (498)
T ss_pred ccc----cEEeecccccCCHHHHHHHHHHHHhCeEec
Confidence 333 599999999999999999999999999876
No 19
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=6.7e-14 Score=130.69 Aligned_cols=97 Identities=21% Similarity=0.266 Sum_probs=77.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCC---ChhhhcceeEeecCeEEEec-cHHHHHhhc--CcEEEEeCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDT---TEADIKQRREIVNGTAIYYD-QSAVRAAIE--GRVLILEGI 119 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~---~~~dL~g~~~~~~G~~~~~~-gpl~~A~~~--G~vlllDEI 119 (162)
++||+||||||||.+|+.+|+.++.++.++.|+.-+ +.++|+|.+ .|...+.. |.+.++++. .+|++||||
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~---~gyvg~~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP---PGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC---CCcccccccchHHHHHHhCCCcEEEeccH
Confidence 589999999999999999999999999999887533 367777742 34333333 467777654 369999999
Q ss_pred CCCCccHHHHHHHhhcCCeEEEcCCc
Q psy4122 120 EKAERNVLPVLNNLLENREMHLEDGR 145 (162)
Q Consensus 120 d~a~~~v~~~L~~lle~r~l~l~~g~ 145 (162)
+++++++++.|+++||+|.++-..|+
T Consensus 567 eka~~~v~~~LLq~ld~G~ltd~~g~ 592 (758)
T PRK11034 567 EKAHPDVFNLLLQVMDNGTLTDNNGR 592 (758)
T ss_pred hhhhHHHHHHHHHHHhcCeeecCCCc
Confidence 99999999999999999998765554
No 20
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.2e-13 Score=126.87 Aligned_cols=89 Identities=22% Similarity=0.319 Sum_probs=74.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee-EeecCeEEEeccHHHHHhhc----CcEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR-EIVNGTAIYYDQSAVRAAIE----GRVLILE 117 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~-~~~~G~~~~~~gpl~~A~~~----G~vlllD 117 (162)
.|--+||+||||+|||+|++.+|+.+|+++.++++.+-.+.+++.|++ +..|. .+|-++++|++ ..+++||
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGa----mPGrIiQ~mkka~~~NPv~LLD 424 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGA----MPGKIIQGMKKAGVKNPVFLLD 424 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccccc----CChHHHHHHHHhCCcCCeEEee
Confidence 444689999999999999999999999999999999888899999944 43332 46678888764 4789999
Q ss_pred CCCCCCcc----HHHHHHHhhc
Q psy4122 118 GIEKAERN----VLPVLNNLLE 135 (162)
Q Consensus 118 EId~a~~~----v~~~L~~lle 135 (162)
|||+++.+ -.++|+.+||
T Consensus 425 EIDKm~ss~rGDPaSALLEVLD 446 (782)
T COG0466 425 EIDKMGSSFRGDPASALLEVLD 446 (782)
T ss_pred chhhccCCCCCChHHHHHhhcC
Confidence 99998876 4789999998
No 21
>KOG2004|consensus
Probab=99.48 E-value=1.5e-13 Score=126.19 Aligned_cols=105 Identities=18% Similarity=0.232 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHhc----CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee-EeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKD----NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR-EIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~----~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~-~~~~G~~~~~~ 101 (162)
.+-..+.|+.+.... ..|+-+||+||||+|||++++.+|+++|+.+.++++.+-++.+|+.|++ +..+. .+
T Consensus 417 ~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA----MP 492 (906)
T KOG2004|consen 417 EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA----MP 492 (906)
T ss_pred HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc----CC
Confidence 344555666666543 3567899999999999999999999999999999999999999999943 44332 56
Q ss_pred cHHHHHhhc----CcEEEEeCCCCCCc----cHHHHHHHhhc
Q psy4122 102 QSAVRAAIE----GRVLILEGIEKAER----NVLPVLNNLLE 135 (162)
Q Consensus 102 gpl~~A~~~----G~vlllDEId~a~~----~v~~~L~~lle 135 (162)
|-+++|++. ..+++|||||+... |-.++|+.+||
T Consensus 493 GkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLD 534 (906)
T KOG2004|consen 493 GKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLD 534 (906)
T ss_pred hHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcC
Confidence 788888864 57999999999776 45789999998
No 22
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.46 E-value=3.5e-13 Score=112.18 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcC----CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHH
Q psy4122 29 DWLSHLRWILQKDN----MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104 (162)
Q Consensus 29 ~~~~~L~~i~~~~~----~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl 104 (162)
+.++.|+.++.... ...+++|+||||||||++|+++|+.++.++............++. ..
T Consensus 11 ~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~---------------~~ 75 (305)
T TIGR00635 11 KVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA---------------AI 75 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH---------------HH
Confidence 34555666665321 224799999999999999999999999887655544332333333 23
Q ss_pred HHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeE
Q psy4122 105 VRAAIEGRVLILEGIEKAERNVLPVLNNLLENREM 139 (162)
Q Consensus 105 ~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l 139 (162)
..++..+.+++||||++++++.++.|.++++++..
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~ 110 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRL 110 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhhe
Confidence 45667789999999999999999999999987664
No 23
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.46 E-value=3.6e-13 Score=125.34 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=76.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccC---CChhhhcceeEeecCeEEEecc-HHHHHhhc--CcEEEEeCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRD---TTEADIKQRREIVNGTAIYYDQ-SAVRAAIE--GRVLILEGI 119 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~---~~~~dL~g~~~~~~G~~~~~~g-pl~~A~~~--G~vlllDEI 119 (162)
+++|+||||||||++|+.+|+.++.++.++.++.- .+.+.++|.+ .|...+.++ .+.++++. .+|++||||
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~---~gyvg~~~~~~l~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP---PGYVGFEQGGLLTEAVRKHPHCVLLLDEI 562 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC---CCCcccchhhHHHHHHHhCCCeEEEEech
Confidence 37999999999999999999999999988888643 2456677642 333334443 46777754 379999999
Q ss_pred CCCCccHHHHHHHhhcCCeEEEcCCc
Q psy4122 120 EKAERNVLPVLNNLLENREMHLEDGR 145 (162)
Q Consensus 120 d~a~~~v~~~L~~lle~r~l~l~~g~ 145 (162)
+++++++++.|++++|+|.++...|+
T Consensus 563 eka~~~~~~~Ll~~ld~g~~~d~~g~ 588 (731)
T TIGR02639 563 EKAHPDIYNILLQVMDYATLTDNNGR 588 (731)
T ss_pred hhcCHHHHHHHHHhhccCeeecCCCc
Confidence 99999999999999999998754443
No 24
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.45 E-value=6.4e-14 Score=127.73 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=83.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCC--ceEEEEeccCCChhhhcceeE----eecCeEEEeccHHHHHhhcCcEEEEeCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQR--EVEYICLSRDTTEADIKQRRE----IVNGTAIYYDQSAVRAAIEGRVLILEGI 119 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~--p~~~v~~~~~~~~~dL~g~~~----~~~G~~~~~~gpl~~A~~~G~vlllDEI 119 (162)
+|||.|+||+|||++|+.++..++. |+..+++ ..+...|.|... +.+|.+.|++|++.+| +|++|+||||
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~--~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A--~~GvL~lDEi 93 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPL--GVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA--PRGVLYVDMA 93 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCc--ccchhhcccchhhhhhhhcCcccCCCCCeeeC--CCCcEeccch
Confidence 8999999999999999999998875 4555554 456677777533 3468888999998765 8899999999
Q ss_pred CCCCccHHHHHHHhhcCCeEEEc-CCcEEecCcchHhh
Q psy4122 120 EKAERNVLPVLNNLLENREMHLE-DGRFLVSASTYDKL 156 (162)
Q Consensus 120 d~a~~~v~~~L~~lle~r~l~l~-~g~~i~~~~~f~~~ 156 (162)
|++++++++.|..+|+++.+++. +|.....+.+|+.+
T Consensus 94 ~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lI 131 (589)
T TIGR02031 94 NLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALI 131 (589)
T ss_pred hhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEE
Confidence 99999999999999999998775 34444334444443
No 25
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.45 E-value=2.2e-13 Score=116.86 Aligned_cols=96 Identities=15% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh-------CCceE-------------E------------------EEeccCCChhh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT-------QREVE-------------Y------------------ICLSRDTTEAD 85 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l-------g~p~~-------------~------------------v~~~~~~~~~d 85 (162)
..+++|.|++|+|||++++.++..+ +.|+. + ..+...++.++
T Consensus 25 ~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~ 104 (337)
T TIGR02030 25 IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDR 104 (337)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccc
Confidence 3589999999999999999999887 33322 0 12222344557
Q ss_pred hcceeE----eecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 86 IKQRRE----IVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 86 L~g~~~----~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
|+|... +..|..++++|++.+| ++++|+|||||++++.+++.|..+|+++.+.+
T Consensus 105 l~G~~d~~~~l~~g~~~~~~GlL~~A--~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v 162 (337)
T TIGR02030 105 VCGTLDIERALTEGVKAFEPGLLARA--NRGILYIDEVNLLEDHLVDVLLDVAASGWNVV 162 (337)
T ss_pred eecchhHhhHhhcCCEEeecCcceec--cCCEEEecChHhCCHHHHHHHHHHHHhCCeEE
Confidence 777433 3478999999987655 78999999999999999999999999887554
No 26
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.44 E-value=2.1e-13 Score=106.30 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEEe
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIYY 100 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~~ 100 (162)
+.+.+.++.+-.......||+|+|++||||+.+|+.+.+.. +.|+..++|..-.. .++|.|... .-.|.....
T Consensus 6 ~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~ 85 (168)
T PF00158_consen 6 PAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDK 85 (168)
T ss_dssp HHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEB
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcccccccccccccc
Confidence 44444444444444456799999999999999999999765 46888899973321 234556311 112333344
Q ss_pred ccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 101 DQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 101 ~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
.|.+.. .+||.|+||||+.++++++..|..+|+++.+.-.+
T Consensus 86 ~G~l~~--A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g 126 (168)
T PF00158_consen 86 KGLLEQ--ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLG 126 (168)
T ss_dssp EHHHHH--TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCT
T ss_pred CCceee--ccceEEeecchhhhHHHHHHHHHHHHhhchhcccc
Confidence 565544 48899999999999999999999999998876543
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.43 E-value=9.4e-13 Score=111.54 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhc----CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 28 QDWLSHLRWILQKD----NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 28 ~~~~~~L~~i~~~~----~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
....+.++.++.+. ....+++|+||||||||++|+.+|+.++..+...+.......+++. .
T Consensus 31 ~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~---------------~ 95 (328)
T PRK00080 31 EKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLA---------------A 95 (328)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHH---------------H
Confidence 55666676666542 2234899999999999999999999999887665554332333333 3
Q ss_pred HHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeE
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREM 139 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l 139 (162)
+..++..+.+++||||+++++++.+.|.+.++++.+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~ 131 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRL 131 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcce
Confidence 445567889999999999999999999999997754
No 28
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.40 E-value=1.3e-13 Score=120.97 Aligned_cols=103 Identities=19% Similarity=0.179 Sum_probs=67.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeE--eecCeEEEeccHHHHHhhcCcEEEEeCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRRE--IVNGTAIYYDQSAVRAAIEGRVLILEGIEK 121 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~--~~~G~~~~~~gpl~~A~~~G~vlllDEId~ 121 (162)
..++||+||||||||++|+.+|..++.|+..+.++.-+ ...++|... +..+...-.++.+. ...+++|+|||||+
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~-~~gyvG~d~e~~l~~l~~~~~~~~~--~a~~gIi~iDEIdk 184 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLT-EAGYVGEDVENILLKLLQAADYDVE--KAQRGIVYIDEIDK 184 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcc-cCCcccchHHHHHHHHHHhccccHH--HcCCcEEEEechhh
Confidence 35899999999999999999999999998877775322 222222100 00000000001111 23678999999999
Q ss_pred CCcc--------------HHHHHHHhhcCCeEEEcC-CcEEec
Q psy4122 122 AERN--------------VLPVLNNLLENREMHLED-GRFLVS 149 (162)
Q Consensus 122 a~~~--------------v~~~L~~lle~r~l~l~~-g~~i~~ 149 (162)
+++. ++..|+.+||...+.+++ |.+..+
T Consensus 185 l~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~ 227 (412)
T PRK05342 185 IARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP 227 (412)
T ss_pred hccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence 9764 899999999988888864 444333
No 29
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.38 E-value=8.5e-13 Score=121.21 Aligned_cols=94 Identities=15% Similarity=0.246 Sum_probs=74.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC---------------------------------CceEEEEeccCCChhhhcceeE-
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ---------------------------------REVEYICLSRDTTEADIKQRRE- 91 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg---------------------------------~p~~~v~~~~~~~~~dL~g~~~- 91 (162)
+|||.|++|||||++|+.++..+. .+..++.++.+.+...|+|...
T Consensus 27 ~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~ 106 (633)
T TIGR02442 27 GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDI 106 (633)
T ss_pred eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccH
Confidence 799999999999999999999982 0112344555666777887532
Q ss_pred ---eecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 92 ---IVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 92 ---~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
+..|...+..|++.+ .++++|+||||+++++++++.|+.+|+++.+.+
T Consensus 107 ~~~l~~g~~~~~~G~L~~--A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v 157 (633)
T TIGR02442 107 ERALREGEKAFQPGLLAE--AHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRV 157 (633)
T ss_pred HHHhhcCCeeecCcceee--cCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEE
Confidence 345777788887754 488999999999999999999999999997655
No 30
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.36 E-value=7.5e-12 Score=102.30 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=78.4
Q ss_pred cCCCCCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEe
Q psy4122 21 VNTDALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYY 100 (162)
Q Consensus 21 ~~~~~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~ 100 (162)
.+....||.+.+....|..++.......+.||+|||||+.++.+|+.+|+++..++|.+.++...+-.
T Consensus 9 ~~rlv~Tplt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~r------------ 76 (231)
T PF12774_consen 9 SPRLVITPLTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSR------------ 76 (231)
T ss_dssp -------HHHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHH------------
T ss_pred CCCceechHHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHH------------
Confidence 34556799999999999999988888899999999999999999999999999999999988876641
Q ss_pred ccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 101 DQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 101 ~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle 135 (162)
-+.-+...|.|+.+||+|+.+.++++++-+.+.
T Consensus 77 --il~G~~~~GaW~cfdefnrl~~~vLS~i~~~i~ 109 (231)
T PF12774_consen 77 --ILKGLAQSGAWLCFDEFNRLSEEVLSVISQQIQ 109 (231)
T ss_dssp --HHHHHHHHT-EEEEETCCCSSHHHHHHHHHHHH
T ss_pred --HHHHHhhcCchhhhhhhhhhhHHHHHHHHHHHH
Confidence 233345679999999999999999998866554
No 31
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.36 E-value=1.3e-12 Score=112.71 Aligned_cols=99 Identities=13% Similarity=0.235 Sum_probs=74.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCC-------c-------------------------------eEEEEeccCCChhhhc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQR-------E-------------------------------VEYICLSRDTTEADIK 87 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~-------p-------------------------------~~~v~~~~~~~~~dL~ 87 (162)
.++|.|++|||||++++.++..+.. | ...+.+....+.++|+
T Consensus 40 ~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~ 119 (350)
T CHL00081 40 GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVC 119 (350)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhcc
Confidence 7999999999999999999877632 1 1122333345666677
Q ss_pred cee----EeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc-CCcE
Q psy4122 88 QRR----EIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLE-DGRF 146 (162)
Q Consensus 88 g~~----~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~-~g~~ 146 (162)
|.. .+.+|...+++|++.+| ++++|++||||++++++++.|..+++++...+. +|..
T Consensus 120 G~iD~~~al~~g~~~~~~GlL~~A--~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s 181 (350)
T CHL00081 120 GTIDIEKALTEGVKAFEPGLLAKA--NRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGIS 181 (350)
T ss_pred CcccHHHHhhcCcccccCCeeeec--CCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCee
Confidence 643 23467777888887765 899999999999999999999999999876664 3443
No 32
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.4e-13 Score=118.64 Aligned_cols=110 Identities=19% Similarity=0.266 Sum_probs=80.1
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce--EE-------------------------EEeccCCChhhhcceeEe
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV--EY-------------------------ICLSRDTTEADIKQRREI 92 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~--~~-------------------------v~~~~~~~~~dL~g~~~~ 92 (162)
+...|+|++++||||||||.||+.+..++--=. +. ..-|...+..+|
T Consensus 194 AAAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aL------ 267 (490)
T COG0606 194 AAAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAAL------ 267 (490)
T ss_pred HHhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHH------
Confidence 344589999999999999999998886663100 00 011111122222
Q ss_pred ecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC-CcEEecCcchHhhh
Q psy4122 93 VNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED-GRFLVSASTYDKLL 157 (162)
Q Consensus 93 ~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~-g~~i~~~~~f~~~~ 157 (162)
.+|...+.+|+... .|+|||||||+-++..+++++|.+.||++++.|.. +..+.=+.+|+.+.
T Consensus 268 vGGG~~p~PGeIsL--AH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~ 331 (490)
T COG0606 268 VGGGGVPRPGEISL--AHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVA 331 (490)
T ss_pred hCCCCCCCCCceee--ecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhh
Confidence 24556777777644 59999999999999999999999999999999974 66777777887764
No 33
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.35 E-value=2.3e-12 Score=113.28 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=61.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH---------hhcCcEEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA---------AIEGRVLI 115 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A---------~~~G~vll 115 (162)
.++||+||||||||++|+.+|+.++.|+..+.+..- +...+.|.. ..+.+..+ ...+++|+
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L-~~~gyvG~d---------~e~~L~~~~~~~~~~l~~a~~gIV~ 186 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTL-TEAGYVGED---------VENILLKLLQAADYDVEKAQKGIIY 186 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhc-ccccccccc---------HHHHHHHHHHhCcccHHhcccceEE
Confidence 479999999999999999999999999876665432 222222210 01122222 12457999
Q ss_pred EeCCCCCCc--------------cHHHHHHHhhcCCeEEEc
Q psy4122 116 LEGIEKAER--------------NVLPVLNNLLENREMHLE 142 (162)
Q Consensus 116 lDEId~a~~--------------~v~~~L~~lle~r~l~l~ 142 (162)
|||||++++ ++++.|+.+||.....++
T Consensus 187 lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 187 IDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred ecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 999999987 699999999974444443
No 34
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.35 E-value=1.4e-12 Score=116.98 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=76.0
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce--EEEEeccCCChhhh------cceeE------------ee
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV--EYICLSRDTTEADI------KQRRE------------IV 93 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~--~~v~~~~~~~~~dL------~g~~~------------~~ 93 (162)
.+.+..+...+++++|+||||||||++++.++.++..-- +.+....-.+.... +..++ +.
T Consensus 201 ~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ 280 (499)
T TIGR00368 201 KRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALV 280 (499)
T ss_pred HhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhh
Confidence 334444555678999999999999999999997653210 11111111000000 00000 11
Q ss_pred cCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC-CcEEecCcchHhh
Q psy4122 94 NGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED-GRFLVSASTYDKL 156 (162)
Q Consensus 94 ~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~-g~~i~~~~~f~~~ 156 (162)
+|.....+|.+. ..++++|+|||++.+++++++.|.++||++++.+.. |..+.-+.+|+.+
T Consensus 281 ggg~~~~pG~i~--lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlI 342 (499)
T TIGR00368 281 GGGPIPLPGEIS--LAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLV 342 (499)
T ss_pred CCccccchhhhh--ccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEE
Confidence 343445566554 458999999999999999999999999999987753 4334344455544
No 35
>KOG2028|consensus
Probab=99.34 E-value=1.8e-12 Score=112.47 Aligned_cols=111 Identities=14% Similarity=0.314 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce-EEEEecc-CCChhhhcceeEeecCeEEEeccHHHHH-hh
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV-EYICLSR-DTTEADIKQRREIVNGTAIYYDQSAVRA-AI 109 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~-~~v~~~~-~~~~~dL~g~~~~~~G~~~~~~gpl~~A-~~ 109 (162)
.|+..++..... .++||||||||||+||+.++.-...+. .++.++. .....|+.+- |++..=.+. -+
T Consensus 152 llrs~ieq~~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~i---------fe~aq~~~~l~k 221 (554)
T KOG2028|consen 152 LLRSLIEQNRIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDI---------FEQAQNEKSLTK 221 (554)
T ss_pred HHHHHHHcCCCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHH---------HHHHHHHHhhhc
Confidence 456666654443 799999999999999999998777663 3455553 2335566531 111110111 14
Q ss_pred cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcCCcEEecCcchHh
Q psy4122 110 EGRVLILEGIEKAERNVLPVLNNLLENREMHLEDGRFLVSASTYDK 155 (162)
Q Consensus 110 ~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~g~~i~~~~~f~~ 155 (162)
...||+||||+|++..+++.+++.+|+|.+++.+...- .|.|+.
T Consensus 222 rkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTE--NPSFql 265 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTE--NPSFQL 265 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccC--CCccch
Confidence 55799999999999999999999999999999765433 667764
No 36
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.34 E-value=5e-12 Score=119.55 Aligned_cols=98 Identities=23% Similarity=0.339 Sum_probs=73.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEEecc---CCChhhhcceeEeecCeEEE-eccHHHHHhhcC--cEEEEe
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT---QREVEYICLSR---DTTEADIKQRREIVNGTAIY-YDQSAVRAAIEG--RVLILE 117 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~---~~~~~dL~g~~~~~~G~~~~-~~gpl~~A~~~G--~vlllD 117 (162)
++|.||||||||++|+.+|+.+ ...+.++.++. ..+.+.|+|.+ .|...+ +.|.+..++++. ++|+||
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~---~gyvg~~~~g~L~~~v~~~p~svvllD 675 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSP---PGYVGYGEGGVLTEAVRRKPYSVVLLD 675 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCC---CCcccccccchHHHHHHhCCCcEEEEe
Confidence 7999999999999999999887 34556666653 23345566632 233333 235677887654 699999
Q ss_pred CCCCCCccHHHHHHHhhcCCeEEEcCCcEE
Q psy4122 118 GIEKAERNVLPVLNNLLENREMHLEDGRFL 147 (162)
Q Consensus 118 EId~a~~~v~~~L~~lle~r~l~l~~g~~i 147 (162)
||+++++++++.|.+++++|.++-..|+.+
T Consensus 676 Eieka~~~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 676 EVEKAHPDVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred chhhcCHHHHHHHHHHhhcceeecCCCcEE
Confidence 999999999999999999999877666543
No 37
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.34 E-value=2.9e-12 Score=119.98 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH----hhcCcEEEEeC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA----AIEGRVLILEG 118 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A----~~~G~vlllDE 118 (162)
.+.+++|+||||||||++|+.+|+.++.++.++++....+.+++.+....--|. ..|.+.++ .....+++|||
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~---~~g~i~~~l~~~~~~~~villDE 422 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGA---MPGRIIQGLKKAKTKNPLFLLDE 422 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCC---CCchHHHHHHHhCcCCCEEEEec
Confidence 345799999999999999999999999999999987766778887632111111 12344444 34557999999
Q ss_pred CCCCCcc----HHHHHHHhhcC
Q psy4122 119 IEKAERN----VLPVLNNLLEN 136 (162)
Q Consensus 119 Id~a~~~----v~~~L~~lle~ 136 (162)
||++.++ ..++|+++||.
T Consensus 423 idk~~~~~~~~~~~aLl~~ld~ 444 (775)
T TIGR00763 423 IDKIGSSFRGDPASALLEVLDP 444 (775)
T ss_pred hhhcCCccCCCHHHHHHHhcCH
Confidence 9999774 45888888873
No 38
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.34 E-value=1.7e-12 Score=116.50 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce--EEEEeccCCC-------hhhhcceeE-----------ee
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV--EYICLSRDTT-------EADIKQRRE-----------IV 93 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~--~~v~~~~~~~-------~~dL~g~~~-----------~~ 93 (162)
++.+..+...|++++|+||||||||++++.++..+...- +.+.+..-.+ ...+..++. +.
T Consensus 200 ~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~ 279 (506)
T PRK09862 200 KRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMV 279 (506)
T ss_pred HhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHh
Confidence 334444455788999999999999999999997764211 1122211000 111211110 12
Q ss_pred cCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC-CcEEecCcchHhh
Q psy4122 94 NGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED-GRFLVSASTYDKL 156 (162)
Q Consensus 94 ~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~-g~~i~~~~~f~~~ 156 (162)
+|.....+|.+ +..+||+|+||||+++++++++.|.+.||++.+.+.. |..+.-+.+|+.+
T Consensus 280 GGg~~~~pG~l--~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lI 341 (506)
T PRK09862 280 GGGAIPGPGEI--SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLV 341 (506)
T ss_pred CCCceehhhHh--hhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEE
Confidence 45555565654 5569999999999999999999999999999998864 5444445566544
No 39
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.33 E-value=5.6e-12 Score=118.75 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=73.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccC---CChhhhcceeEeecCeEEEec-cHHHHHhhcC--cEEEEe
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRD---TTEADIKQRREIVNGTAIYYD-QSAVRAAIEG--RVLILE 117 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~---~~~~dL~g~~~~~~G~~~~~~-gpl~~A~~~G--~vlllD 117 (162)
++|.||||||||++|+.+|+.+ +.++.++.++.- .+.+.|+|.+ .|...+.+ |.+..+++.. .|+++|
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~---~gyvg~~~~~~l~~~~~~~p~~VvllD 618 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSP---PGYVGYNEGGQLTEAVRKKPYTVVLFD 618 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCC---CcccCcCccchHHHHHHhCCCeEEEEC
Confidence 7899999999999999999876 345666666532 2355666642 34333433 3577787665 699999
Q ss_pred CCCCCCccHHHHHHHhhcCCeEEEcCCcEE
Q psy4122 118 GIEKAERNVLPVLNNLLENREMHLEDGRFL 147 (162)
Q Consensus 118 EId~a~~~v~~~L~~lle~r~l~l~~g~~i 147 (162)
||+++++++++.|++++|+|+++...|+.+
T Consensus 619 eieka~~~v~~~Llq~le~g~~~d~~g~~v 648 (821)
T CHL00095 619 EIEKAHPDIFNLLLQILDDGRLTDSKGRTI 648 (821)
T ss_pred ChhhCCHHHHHHHHHHhccCceecCCCcEE
Confidence 999999999999999999998876655543
No 40
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.32 E-value=8.6e-12 Score=117.07 Aligned_cols=91 Identities=22% Similarity=0.334 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc----CcEEEEeC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE----GRVLILEG 118 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~----G~vlllDE 118 (162)
.|..++|+||||||||++++.+|+.+++++.++++....+.+++.|....--|. .+|.+.+++++ +.+++|||
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~---~~G~~~~~l~~~~~~~~villDE 424 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGS---MPGKLIQKMAKVGVKNPLFLLDE 424 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCC---CCcHHHHHHHhcCCCCCEEEEEC
Confidence 456799999999999999999999999999999998877888888754322222 35677777654 45899999
Q ss_pred CCCCCccH----HHHHHHhhcC
Q psy4122 119 IEKAERNV----LPVLNNLLEN 136 (162)
Q Consensus 119 Id~a~~~v----~~~L~~lle~ 136 (162)
||+++++. .++|++++|.
T Consensus 425 idk~~~~~~g~~~~aLlevld~ 446 (784)
T PRK10787 425 IDKMSSDMRGDPASALLEVLDP 446 (784)
T ss_pred hhhcccccCCCHHHHHHHHhcc
Confidence 99999886 5999999985
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.32 E-value=9.6e-12 Score=117.59 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=73.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccC---CChhhhcceeEeecCeEEEe-ccHHHHHhhc--CcEEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRD---TTEADIKQRREIVNGTAIYY-DQSAVRAAIE--GRVLIL 116 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~---~~~~dL~g~~~~~~G~~~~~-~gpl~~A~~~--G~vlll 116 (162)
+++|.||||||||++|+.+|+.+ +.++.++.++.- ...+.|+|.+ .|.+.+. .|.+..+++. ..+|+|
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~---~g~~g~~~~g~l~~~v~~~p~~vlll 673 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAP---PGYVGYEEGGQLTEAVRRKPYSVVLF 673 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCC---CCccCcccccHHHHHHHcCCCcEEEE
Confidence 48999999999999999999877 457777777632 2345666643 3433343 3567777754 369999
Q ss_pred eCCCCCCccHHHHHHHhhcCCeEEEcCC
Q psy4122 117 EGIEKAERNVLPVLNNLLENREMHLEDG 144 (162)
Q Consensus 117 DEId~a~~~v~~~L~~lle~r~l~l~~g 144 (162)
|||+++++++++.|+++||+|.++...|
T Consensus 674 Deieka~~~v~~~Ll~~l~~g~l~d~~g 701 (852)
T TIGR03346 674 DEVEKAHPDVFNVLLQVLDDGRLTDGQG 701 (852)
T ss_pred eccccCCHHHHHHHHHHHhcCceecCCC
Confidence 9999999999999999999998875433
No 42
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.30 E-value=1.2e-11 Score=89.00 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIE 120 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId 120 (162)
+.+++++||||||||++++.++..+ +.++.++.++............... .+..-..........++++||++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~lilDe~~ 94 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF----LVRLLFELAEKAKPGVLFIDEID 94 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh----hHhHHHHhhccCCCeEEEEeChh
Confidence 6789999999999999999999988 7788777776443332222100000 00000111123456899999999
Q ss_pred CCCccHHHHHHHhhcCC
Q psy4122 121 KAERNVLPVLNNLLENR 137 (162)
Q Consensus 121 ~a~~~v~~~L~~lle~r 137 (162)
.+++.....+...++..
T Consensus 95 ~~~~~~~~~~~~~i~~~ 111 (151)
T cd00009 95 SLSRGAQNALLRVLETL 111 (151)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 99887777777777654
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.29 E-value=1.8e-11 Score=107.05 Aligned_cols=93 Identities=19% Similarity=0.289 Sum_probs=68.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH-----
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA----- 107 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A----- 107 (162)
.|+.++..... .+++|+||||||||++|+.+|..++.++..+++.. ....++.. .+..+
T Consensus 26 ~L~~~i~~~~~-~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-~~~~~ir~--------------ii~~~~~~~~ 89 (413)
T PRK13342 26 PLRRMIEAGRL-SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-SGVKDLRE--------------VIEEARQRRS 89 (413)
T ss_pred HHHHHHHcCCC-ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-ccHHHHHH--------------HHHHHHHhhh
Confidence 37777765443 38999999999999999999999998877766542 12223221 01111
Q ss_pred hhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 108 AIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 108 ~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..++.+|+||||++++++.++.|+..++++.+.+
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iil 123 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVEDGTITL 123 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhcCcEEE
Confidence 1155799999999999999999999999887655
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.28 E-value=4.8e-12 Score=91.61 Aligned_cols=82 Identities=22% Similarity=0.182 Sum_probs=55.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc--CcEEEEeCCCCCCc
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE--GRVLILEGIEKAER 124 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~--G~vlllDEId~a~~ 124 (162)
+||+||||||||++|+.+|+.++.++..+.+....+. ..+ ..... ...-+.+|... ..+++|||+|...+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~--~~~-----~~~~~-i~~~~~~~~~~~~~~vl~iDe~d~l~~ 72 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISS--YAG-----DSEQK-IRDFFKKAKKSAKPCVLFIDEIDKLFP 72 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTS--STT-----HHHHH-HHHHHHHHHHTSTSEEEEEETGGGTSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccc--ccc-----ccccc-cccccccccccccceeeeeccchhccc
Confidence 6899999999999999999999999877777633210 000 00000 01123333334 37999999999888
Q ss_pred cH-----------HHHHHHhhcC
Q psy4122 125 NV-----------LPVLNNLLEN 136 (162)
Q Consensus 125 ~v-----------~~~L~~lle~ 136 (162)
+. ++.|...+++
T Consensus 73 ~~~~~~~~~~~~~~~~L~~~l~~ 95 (132)
T PF00004_consen 73 KSQPSSSSFEQRLLNQLLSLLDN 95 (132)
T ss_dssp HCSTSSSHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccceeeecccc
Confidence 76 7778887773
No 45
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.28 E-value=9.7e-12 Score=111.59 Aligned_cols=93 Identities=14% Similarity=0.261 Sum_probs=69.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe--ecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI--VNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~--~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
|+||+|+||+|||++|+.++....+.. +... ...+...|.+.... ..|.+..+.|++..| ++|+++|||+|+++
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~-~~~~-~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A--~~Gil~iDEi~~l~ 313 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAV-YTTG-KGSSAVGLTAAVTRDPETREFTLEGGALVLA--DNGVCCIDEFDKMD 313 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcce-EcCC-CCCCcCCccccceEccCcceEEecCccEEec--CCCEEEEechhhCC
Confidence 899999999999999999999886542 2221 11222233321111 246677788877654 89999999999999
Q ss_pred ccHHHHHHHhhcCCeEEEc
Q psy4122 124 RNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~ 142 (162)
++.+..|+++||.+.+.+.
T Consensus 314 ~~~q~~L~e~me~~~i~i~ 332 (509)
T smart00350 314 DSDRTAIHEAMEQQTISIA 332 (509)
T ss_pred HHHHHHHHHHHhcCEEEEE
Confidence 9999999999999998775
No 46
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.28 E-value=3.8e-12 Score=116.08 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=93.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee----EeecCeEEEeccHHHHHhhcCcEEEEeCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR----EIVNGTAIYYDQSAVRAAIEGRVLILEGIEK 121 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~----~~~~G~~~~~~gpl~~A~~~G~vlllDEId~ 121 (162)
-|+|.|++|++||++++.++.++..+.-++.+|...+...|+|.- .+..|...+++|-+.+ .++|||+|||+|+
T Consensus 27 Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~--Ah~GvL~lDe~n~ 104 (584)
T PRK13406 27 GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAE--ADGGVLVLAMAER 104 (584)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceee--ccCCEEEecCccc
Confidence 499999999999999999999997744567888888899999853 3456787788887654 5999999999999
Q ss_pred CCccHHHHHHHhhcCCeEEEc-CCcEEecCcchHhhh
Q psy4122 122 AERNVLPVLNNLLENREMHLE-DGRFLVSASTYDKLL 157 (162)
Q Consensus 122 a~~~v~~~L~~lle~r~l~l~-~g~~i~~~~~f~~~~ 157 (162)
+++.+++.|.+.||+|.+++. +|..+..+.+|..++
T Consensus 105 ~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIa 141 (584)
T PRK13406 105 LEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVA 141 (584)
T ss_pred CCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEe
Confidence 999999999999999999996 577777777887654
No 47
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.27 E-value=3.1e-11 Score=103.08 Aligned_cols=113 Identities=17% Similarity=0.219 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+..+.+-.......||+|+|++||||+.+|+.+.... +.|+..++|..... .+.|.|... .-.|....
T Consensus 5 S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~ 84 (329)
T TIGR02974 5 SNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKR 84 (329)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccc
Confidence 455555555555555567899999999999999999988654 46889999973321 233444210 01122222
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|-+.. .+||.|+||||+.++++++..|..+|+++.+.-
T Consensus 85 ~~G~~~~--a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~ 124 (329)
T TIGR02974 85 HQGRFER--ADGGTLFLDELATASLLVQEKLLRVIEYGEFER 124 (329)
T ss_pred cCCchhh--CCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEe
Confidence 3344433 378999999999999999999999999887643
No 48
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.22 E-value=4.6e-11 Score=113.16 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=69.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccC---CChhhhcceeEeecCeEEEec-cHHHHHhhc--CcEEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRD---TTEADIKQRREIVNGTAIYYD-QSAVRAAIE--GRVLIL 116 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~---~~~~dL~g~~~~~~G~~~~~~-gpl~~A~~~--G~vlll 116 (162)
+++|+||||||||++|+.+|..+ +.++.++.|+.- ...+.|+|.+ .|...+.+ |.+..+++. +++|+|
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~---pgy~g~~~~g~l~~~v~~~p~~vLll 676 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAP---PGYVGYEEGGYLTEAVRRRPYSVILL 676 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCC---CcccccchhHHHHHHHHhCCCCeEEE
Confidence 58999999999999999999876 346666776532 2345566632 33333333 346666654 479999
Q ss_pred eCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 117 EGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 117 DEId~a~~~v~~~L~~lle~r~l~l 141 (162)
|||+++++++++.|.+++++|.++-
T Consensus 677 DEieka~~~v~~~Ll~ile~g~l~d 701 (857)
T PRK10865 677 DEVEKAHPDVFNILLQVLDDGRLTD 701 (857)
T ss_pred eehhhCCHHHHHHHHHHHhhCceec
Confidence 9999999999999999999988764
No 49
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=4.1e-11 Score=104.88 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH----hCCceEEEEeccC---CChhhhcceeE-eecCeEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL----TQREVEYICLSRD---TTEADIKQRRE-IVNGTAI 98 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~----lg~p~~~v~~~~~---~~~~dL~g~~~-~~~G~~~ 98 (162)
+++..+.++.+-..--.+.|||+.|++|+||+.+|++++.. .+.|+..+||..- .-.++|.|... .-.|...
T Consensus 84 ~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~ 163 (403)
T COG1221 84 SPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQG 163 (403)
T ss_pred CHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccC
Confidence 45555555555554447899999999999999999988743 3668999999732 22444666211 0011111
Q ss_pred EeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEE
Q psy4122 99 YYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMH 140 (162)
Q Consensus 99 ~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~ 140 (162)
=+.|-+ ...+||.|+||||.++|+..+..|..+||+|++.
T Consensus 164 ~k~Glf--e~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~ 203 (403)
T COG1221 164 GKAGLF--EQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYR 203 (403)
T ss_pred CcCchh--eecCCCEEehhhhhhCCHhHHHHHHHHHHcCceE
Confidence 111222 2248999999999999999999999999999997
No 50
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.19 E-value=2e-10 Score=95.98 Aligned_cols=122 Identities=15% Similarity=0.210 Sum_probs=86.3
Q ss_pred eecCCccceeceeeeecccCCCCCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCC
Q psy4122 3 IAINSQEYVRFTLIYLFSVNTDALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTT 82 (162)
Q Consensus 3 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~ 82 (162)
|-++|+|+.=++.|-+.+.......+...+.++..+........++|+||||+|||++++.+|+.++.++..+++.. ..
T Consensus 2 ~~~~~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~ 80 (316)
T PHA02544 2 ITVNPNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR 80 (316)
T ss_pred cccCCCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc
Confidence 45788888888888777777777788888899888876444434555899999999999999999988877777754 22
Q ss_pred hhhhcceeEeecCeEEEeccHHHHHh---hcCcEEEEeCCCCC-CccHHHHHHHhhcC
Q psy4122 83 EADIKQRREIVNGTAIYYDQSAVRAA---IEGRVLILEGIEKA-ERNVLPVLNNLLEN 136 (162)
Q Consensus 83 ~~dL~g~~~~~~G~~~~~~gpl~~A~---~~G~vlllDEId~a-~~~v~~~L~~lle~ 136 (162)
...+... +. .+.... ....+++|||+++. ..+.++.|..+++.
T Consensus 81 ~~~i~~~--l~---------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~ 127 (316)
T PHA02544 81 IDFVRNR--LT---------RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA 127 (316)
T ss_pred HHHHHHH--HH---------HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh
Confidence 1111100 00 011111 24579999999999 66788888888885
No 51
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.19 E-value=1.9e-10 Score=97.91 Aligned_cols=115 Identities=16% Similarity=0.182 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+......+.||+|+|++||||+++|+.+.... +.|+..++|....+ .++++|... .-.|...-
T Consensus 12 S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~ 91 (326)
T PRK11608 12 ANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91 (326)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccc
Confidence 566666666666666677899999999999999999988665 36888888874321 233444210 00111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
..|.+. ..+||.|+||||+.++++++..|..+++++.+.-.+
T Consensus 92 ~~g~l~--~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g 133 (326)
T PRK11608 92 HPGRFE--RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVG 133 (326)
T ss_pred cCCchh--ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCC
Confidence 123332 347899999999999999999999999988765433
No 52
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.18 E-value=1e-10 Score=105.94 Aligned_cols=111 Identities=16% Similarity=0.078 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH-----------hCCceEEEEeccCCC---hhhhcceeEe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL-----------TQREVEYICLSRDTT---EADIKQRREI 92 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~-----------lg~p~~~v~~~~~~~---~~dL~g~~~~ 92 (162)
++.+.+..+.+...-....||||.|++||||+.+|+.+... .+.|+..++|..-.+ .++|.|.
T Consensus 225 S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~--- 301 (538)
T PRK15424 225 SPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY--- 301 (538)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCC---
Confidence 45444444444333445679999999999999999999876 467899999974322 3445552
Q ss_pred ecCeE-----EEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 93 VNGTA-----IYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 93 ~~G~~-----~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
..|.+ .-..|-+- ..+||.|+||||+.++++++..|..+|+++++.-.
T Consensus 302 ~~gaftga~~~~~~Gl~e--~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~ 354 (538)
T PRK15424 302 EEGAFTGSRRGGRAGLFE--IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRV 354 (538)
T ss_pred ccccccCccccccCCchh--ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEec
Confidence 22211 11222222 24789999999999999999999999999887543
No 53
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.17 E-value=1.6e-10 Score=103.97 Aligned_cols=115 Identities=14% Similarity=0.130 Sum_probs=79.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+-.......||+|+|++||||+++|+.++... +.|+..++|....+ .+.|.|... .-.|....
T Consensus 202 s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~ 281 (534)
T TIGR01817 202 SPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQ 281 (534)
T ss_pred CHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcC
Confidence 566666666555555567799999999999999999999764 56899999974322 234444210 00111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
..|.+.. .+||.|+||||+.++++++..|..+++++.+.-.+
T Consensus 282 ~~g~~~~--a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 282 RKGRFEL--ADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred CCCcccc--cCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECC
Confidence 2232322 36899999999999999999999999998875433
No 54
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.15 E-value=1.6e-10 Score=105.76 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeEeecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRREIVNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~~~~G~~~~~ 100 (162)
++.+.+.++.+-.....+.||+|.|++||||+++|+++.+.. +.|+..++|..-.. .++|+|... ++...-.
T Consensus 331 s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~--~~~~~~~ 408 (638)
T PRK11388 331 SPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDR--TDSENGR 408 (638)
T ss_pred CHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCC--cCccCCC
Confidence 566666666666666667799999999999999999998765 46899999974332 355666421 1111111
Q ss_pred ccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 101 DQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 101 ~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.|.+. ..+||.|+||||+.++++++..|..+|+++.+.-
T Consensus 409 ~g~~~--~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~ 447 (638)
T PRK11388 409 LSKFE--LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITR 447 (638)
T ss_pred CCcee--ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEe
Confidence 12222 2478999999999999999999999999988753
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.12 E-value=2.6e-10 Score=106.33 Aligned_cols=101 Identities=16% Similarity=0.219 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcC
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEG 111 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G 111 (162)
..|+.++..... .+++|+||||||||++|+.+|+..+.++..+++. .....++... +... . ........+
T Consensus 41 ~~L~~~i~~~~~-~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~-~~~i~dir~~--i~~a----~--~~l~~~~~~ 110 (725)
T PRK13341 41 RLLRRAIKADRV-GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV-LAGVKDLRAE--VDRA----K--ERLERHGKR 110 (725)
T ss_pred HHHHHHHhcCCC-ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh-hhhhHHHHHH--HHHH----H--HHhhhcCCc
Confidence 456777765444 3899999999999999999999988776655543 1112222100 0000 0 000111245
Q ss_pred cEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 112 RVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 112 ~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
.+|+|||||+++.+.++.|.+.++++.+.+-
T Consensus 111 ~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI 141 (725)
T PRK13341 111 TILFIDEVHRFNKAQQDALLPWVENGTITLI 141 (725)
T ss_pred eEEEEeChhhCCHHHHHHHHHHhcCceEEEE
Confidence 6999999999999999999999999887663
No 56
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1e-10 Score=99.90 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=68.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH------hhcCcEEEEeC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA------AIEGRVLILEG 118 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A------~~~G~vlllDE 118 (162)
-|+||+||+|||||-||+.+|+.++.|+...-+... |.+-.+|.... + .=-.|+.| -.+.|+++|||
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL-TEAGYVGEDVE-N-----illkLlqaadydV~rAerGIIyIDE 170 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL-TEAGYVGEDVE-N-----ILLKLLQAADYDVERAERGIIYIDE 170 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch-hhccccchhHH-H-----HHHHHHHHcccCHHHHhCCeEEEec
Confidence 389999999999999999999999999764433211 22223331000 0 00011222 23668999999
Q ss_pred CCCCCc--------------cHHHHHHHhhcCCeEEEc-CCcEEecCcch
Q psy4122 119 IEKAER--------------NVLPVLNNLLENREMHLE-DGRFLVSASTY 153 (162)
Q Consensus 119 Id~a~~--------------~v~~~L~~lle~r~l~l~-~g~~i~~~~~f 153 (162)
||+... .|+.+|+.++|.-...+| .|.+=+|+.+|
T Consensus 171 IDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 171 IDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 998644 379999999998888886 46676666654
No 57
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.11 E-value=5.9e-10 Score=99.99 Aligned_cols=113 Identities=13% Similarity=0.148 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+-.....+.||+|+|++||||+.+|+.+.... +.|+..++|..-.+ .++|.|... .-.|...-
T Consensus 193 s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~ 272 (509)
T PRK05022 193 SPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISN 272 (509)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCccc
Confidence 566666666665555567899999999999999999999764 56899999974322 234555210 00111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|.+. ..+||.|+||||+.++++++..|..+++++.+.-
T Consensus 273 ~~g~~~--~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~ 312 (509)
T PRK05022 273 RSGKFE--LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQR 312 (509)
T ss_pred CCcchh--hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEee
Confidence 223332 3478999999999999999999999999988744
No 58
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.10 E-value=4e-10 Score=101.79 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEecc-CCC----hhhhccee--
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSR-DTT----EADIKQRR-- 90 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~-~~~----~~dL~g~~-- 90 (162)
....+.++..+.+ ....|++|+||||||||++|+.+++.. +.++..+.|.. .++ .+.+++..
T Consensus 71 s~~i~~l~~al~~-~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~ 149 (531)
T TIGR02902 71 EEGIKALKAALCG-PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHD 149 (531)
T ss_pred HHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCccc
Confidence 3444555544322 234699999999999999999997642 24556666642 111 12333321
Q ss_pred Eeec--------CeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 91 EIVN--------GTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 91 ~~~~--------G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
.+.. |...-..|.+.+ .+|++|+||||+++++++++.|+.+||++.+.+.
T Consensus 150 p~~~~~~~~g~~g~~~~~~G~l~~--a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~ 207 (531)
T TIGR02902 150 PIYQGAGPLGIAGIPQPKPGAVTR--AHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLD 207 (531)
T ss_pred chhccccccccCCcccccCchhhc--cCCcEEEEechhhCCHHHHHHHHHHHHhCeeeec
Confidence 1100 111112333333 3789999999999999999999999999887764
No 59
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.09 E-value=5.8e-10 Score=89.38 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
....+..++.+......+.+++|+||+|||||+|++.+++.. +.++.++++..... .+
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~--~~----------------- 85 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL--AF----------------- 85 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH--HH-----------------
Confidence 456677777766644456699999999999999999999764 56666666643211 11
Q ss_pred HHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v~~~L~~lle 135 (162)
.-..++.+|+|||++.++++.+..|..+++
T Consensus 86 --~~~~~~~~liiDdi~~l~~~~~~~L~~~~~ 115 (227)
T PRK08903 86 --DFDPEAELYAVDDVERLDDAQQIALFNLFN 115 (227)
T ss_pred --hhcccCCEEEEeChhhcCchHHHHHHHHHH
Confidence 012356899999999999988888888885
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=5.2e-10 Score=100.02 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce--EEEEeccCCChhhhc-c----eeEeecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV--EYICLSRDTTEADIK-Q----RREIVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~--~~v~~~~~~~~~dL~-g----~~~~~~G~~~~ 99 (162)
-+.....|+.++.....++.++|+||+|||||++|+.+|+.++..- ....|+.-.+-.++. + ...+...+..=
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~g 102 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRG 102 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhccc
Confidence 3567788998888777666689999999999999999999887531 000111000000110 0 00011000000
Q ss_pred ecc--HHHHHh----h--cCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 100 YDQ--SAVRAA----I--EGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 100 ~~g--pl~~A~----~--~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+- -+...+ . ...|+||||+|+++.+.+++|+..||+
T Consensus 103 Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE 147 (484)
T PRK14956 103 IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE 147 (484)
T ss_pred HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc
Confidence 000 011111 1 225999999999999999999999997
No 61
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.08 E-value=4e-10 Score=101.84 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCC---hhhhcceeEeecCeEE--
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTT---EADIKQRREIVNGTAI-- 98 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~---~~dL~g~~~~~~G~~~-- 98 (162)
++.+.+..+.+-.......||||.|++||||+.+|+.+... .+.|+..++|..-.+ .++|.|. +.|.+.
T Consensus 218 S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~---~~gaftga 294 (526)
T TIGR02329 218 SAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGY---EEGAFTGA 294 (526)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCC---cccccccc
Confidence 45444444444333345679999999999999999999865 456899999874322 3445552 222211
Q ss_pred ---EeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 99 ---YYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 99 ---~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
...|-+- ..+||.|+||||+.+|++++..|..+|+++++.-
T Consensus 295 ~~~~~~Gl~e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r 338 (526)
T TIGR02329 295 RRGGRTGLIE--AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVR 338 (526)
T ss_pred cccccccchh--hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEe
Confidence 1122222 2478999999999999999999999999988754
No 62
>PRK04195 replication factor C large subunit; Provisional
Probab=99.08 E-value=5e-10 Score=99.76 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhcCC---CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 26 LTQDWLSHLRWILQKDNM---SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~---g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
-.+...+.|+.++..+.. .+++||+||||||||++|+.+|+.++.++..++.+...+...+... ....... .
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~-i~~~~~~----~ 92 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERV-AGEAATS----G 92 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHH-HHHhhcc----C
Confidence 467788889988887764 4589999999999999999999999998877776532222222110 0000000 0
Q ss_pred HHHHHhhcCcEEEEeCCCCCCc----cHHHHHHHhhcCC
Q psy4122 103 SAVRAAIEGRVLILEGIEKAER----NVLPVLNNLLENR 137 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a~~----~v~~~L~~lle~r 137 (162)
++.. ....+|+|||+|.+.. ..+..|..+++..
T Consensus 93 sl~~--~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~ 129 (482)
T PRK04195 93 SLFG--ARRKLILLDEVDGIHGNEDRGGARAILELIKKA 129 (482)
T ss_pred cccC--CCCeEEEEecCcccccccchhHHHHHHHHHHcC
Confidence 0000 2457999999999876 5678888888743
No 63
>PLN03025 replication factor C subunit; Provisional
Probab=99.08 E-value=7.3e-10 Score=93.66 Aligned_cols=103 Identities=17% Similarity=0.253 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh-CCc--eEEEEecc-C-CChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT-QRE--VEYICLSR-D-TTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l-g~p--~~~v~~~~-~-~~~~dL~g~~~~~~G~~~~~~ 101 (162)
....++.|+.++..... .|++|+||||||||++|+.+|+.+ +.. ...+.++. + .....+... ++. +..
T Consensus 18 ~~~~~~~L~~~~~~~~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~--i~~----~~~ 90 (319)
T PLN03025 18 NEDAVSRLQVIARDGNM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNK--IKM----FAQ 90 (319)
T ss_pred cHHHHHHHHHHHhcCCC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHH--HHH----HHh
Confidence 46678888888775443 379999999999999999999876 321 12233331 1 111111100 000 000
Q ss_pred cHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+....-....+++|||+|++..+.++.|+..+|.
T Consensus 91 ~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~ 125 (319)
T PLN03025 91 KKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI 125 (319)
T ss_pred ccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc
Confidence 00000001236999999999999999999999984
No 64
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.07 E-value=2.2e-10 Score=95.90 Aligned_cols=82 Identities=16% Similarity=0.321 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh--hcCcEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA--IEGRVL 114 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~--~~G~vl 114 (162)
+.|++|+||||||||++|+.+|+.+.. ++..+++ +++++.. . |... ......+ ..|++|
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~------~~l~~~~--~-g~~~---~~~~~~~~~a~~gvL 125 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR------DDLVGQY--I-GHTA---PKTKEILKRAMGGVL 125 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH------HHHhHhh--c-ccch---HHHHHHHHHccCcEE
Confidence 348999999999999999998876632 3443433 3444311 1 1110 1111122 257899
Q ss_pred EEeCCCCC---------CccHHHHHHHhhcCC
Q psy4122 115 ILEGIEKA---------ERNVLPVLNNLLENR 137 (162)
Q Consensus 115 llDEId~a---------~~~v~~~L~~lle~r 137 (162)
+|||++.+ +.++++.|.++|+++
T Consensus 126 ~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~ 157 (284)
T TIGR02880 126 FIDEAYYLYRPDNERDYGQEAIEILLQVMENQ 157 (284)
T ss_pred EEechhhhccCCCccchHHHHHHHHHHHHhcC
Confidence 99999966 356788999999865
No 65
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.07 E-value=7.4e-10 Score=102.45 Aligned_cols=113 Identities=15% Similarity=0.215 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+-.....+.||+|+|++|||||++|+.+.... +.|+..++|..... .+++.|... .-.|...-
T Consensus 382 S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~ 461 (686)
T PRK15429 382 SEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQ 461 (686)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccc
Confidence 565655555555444566799999999999999999998754 56888899874321 334555211 00111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|-+ ...+||.|+||||+.++++++..|..+|+++.+.-
T Consensus 462 ~~g~l--e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~ 501 (686)
T PRK15429 462 RIGRF--ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFER 501 (686)
T ss_pred hhhHH--HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEe
Confidence 12223 23578999999999999999999999999887654
No 66
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.07 E-value=2.2e-10 Score=100.26 Aligned_cols=108 Identities=11% Similarity=0.154 Sum_probs=81.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE----EEEe---------------------------------ccCCChhh-hc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE----YICL---------------------------------SRDTTEAD-IK 87 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~----~v~~---------------------------------~~~~~~~d-L~ 87 (162)
.+|+.|+.|+|||++++++|.++.--.. .++| .++++..| ++
T Consensus 40 gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvv 119 (423)
T COG1239 40 GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLV 119 (423)
T ss_pred eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhc
Confidence 6999999999999999999998842110 0111 23444555 77
Q ss_pred ceeE----eecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCC-eEEEcCCcEEecCcchHh
Q psy4122 88 QRRE----IVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENR-EMHLEDGRFLVSASTYDK 155 (162)
Q Consensus 88 g~~~----~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r-~l~l~~g~~i~~~~~f~~ 155 (162)
|... +++|...|++|-|.+| ++||+++||+|.++..++++|+.+++.| +.+=.+|-.+.++.+|-.
T Consensus 120 GslDi~ka~~~g~~af~PGlLa~A--nRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvl 190 (423)
T COG1239 120 GSLDIEKALEEGPKAFQPGLLARA--NRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLL 190 (423)
T ss_pred cccCHHHHHhcCccccCCcchhhc--cCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEE
Confidence 7433 3468889998888766 8999999999999999999999999998 444456777777777643
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=1e-09 Score=98.10 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+.++........++|+||||||||++|+.+|+.++.. +..+..+... +..++. .+...+
T Consensus 19 q~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~---el~aa~ 95 (472)
T PRK14962 19 QDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI---ELDAAS 95 (472)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE---EEeCcc
Confidence 356677888888766655568999999999999999999988642 2111100000 000111 010000
Q ss_pred EEEecc--HHHH------HhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVR------AAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~------A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+. .+.. ...+..+++|||++++..+.++.|+..+|+
T Consensus 96 ~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~ 143 (472)
T PRK14962 96 NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE 143 (472)
T ss_pred cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh
Confidence 000000 0000 112346999999999999999999999987
No 68
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.06 E-value=7e-10 Score=88.10 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
.....++.|+.++... .+.+++|+||+|||||++|++++... +.++.++.+..... +..
T Consensus 21 ~~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~--~~~--------------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ--ADP--------------- 82 (226)
T ss_pred CcHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH--hHH---------------
Confidence 3567888888876543 35589999999999999999999765 45666666642211 000
Q ss_pred HHHHHhhcCcEEEEeCCCCCCccH--HHHHHHhhc
Q psy4122 103 SAVRAAIEGRVLILEGIEKAERNV--LPVLNNLLE 135 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a~~~v--~~~L~~lle 135 (162)
-+...+...++|+|||++.++.+. +..|..+++
T Consensus 83 ~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~ 117 (226)
T TIGR03420 83 EVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYN 117 (226)
T ss_pred HHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 122233455799999999998755 777777765
No 69
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.06 E-value=3.4e-10 Score=93.08 Aligned_cols=84 Identities=17% Similarity=0.224 Sum_probs=51.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCC-----ceEEEEeccCCChhhhcceeEeecCeEEEe-ccHHHHHhhcCcEEEEeC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQR-----EVEYICLSRDTTEADIKQRREIVNGTAIYY-DQSAVRAAIEGRVLILEG 118 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~-----p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~-~gpl~~A~~~G~vlllDE 118 (162)
.|++|+||||||||++|+.+|+.+.. .-..+.+ +.+++.+.+. |.+.-. .+.+-+ ..|++|+|||
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~----~~~~l~~~~~---g~~~~~~~~~~~~--a~~~VL~IDE 113 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV----ERADLVGEYI---GHTAQKTREVIKK--ALGGVLFIDE 113 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe----cHHHhhhhhc---cchHHHHHHHHHh--ccCCEEEEec
Confidence 47999999999999999999987521 1112222 2344544211 111000 011112 2478999999
Q ss_pred CCCCC--------ccHHHHHHHhhcCC
Q psy4122 119 IEKAE--------RNVLPVLNNLLENR 137 (162)
Q Consensus 119 Id~a~--------~~v~~~L~~lle~r 137 (162)
++++. .++++.|...+|+.
T Consensus 114 ~~~L~~~~~~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 114 AYSLARGGEKDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred hhhhccCCccchHHHHHHHHHHHHhcc
Confidence 99865 35778888888865
No 70
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=5.5e-10 Score=100.41 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccC---CChhhhcceeEeecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRD---TTEADIKQRREIVNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~---~~~~dL~g~~~~~~G~~~~~ 100 (162)
+|.+++.++..-..-...-+|||.|.+||||.-+|+.+.... +.|+..++|.+- .=.++|.| |+
T Consensus 251 S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFG----------ye 320 (560)
T COG3829 251 SPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFG----------YE 320 (560)
T ss_pred CHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhC----------cC
Confidence 677777777665544455689999999999999999998654 668999999733 22566666 22
Q ss_pred ccHHHHH----------hhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC-------CcEEecCcch
Q psy4122 101 DQSAVRA----------AIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED-------GRFLVSASTY 153 (162)
Q Consensus 101 ~gpl~~A----------~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~-------g~~i~~~~~f 153 (162)
.|+++-| +.+||.||||||+.+|...|+.|+++|+++++.=-+ .-||+++-|-
T Consensus 321 ~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 321 KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred CccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc
Confidence 3333333 347899999999999999999999999999985432 4456665543
No 71
>KOG1051|consensus
Probab=99.05 E-value=3.8e-10 Score=106.61 Aligned_cols=98 Identities=22% Similarity=0.248 Sum_probs=72.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-CCce--EEEEeccCCChhhhcceeEeecCeEEEecc-HHHHHhhcC--cEEEEeCCC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT-QREV--EYICLSRDTTEADIKQRREIVNGTAIYYDQ-SAVRAAIEG--RVLILEGIE 120 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l-g~p~--~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g-pl~~A~~~G--~vlllDEId 120 (162)
++|.||.|+|||.||+++|+.+ |-.- .++-+++-++.+.++|.+ +|-..+..| -+++|++.. .|+++|||+
T Consensus 594 flflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp---~gyvG~e~gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 594 FLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSP---PGYVGKEEGGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred EEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCC---cccccchhHHHHHHHHhcCCceEEEEechh
Confidence 7999999999999999999876 4333 334343333345666532 233333333 688999765 689999999
Q ss_pred CCCccHHHHHHHhhcCCeEEEcCCcEE
Q psy4122 121 KAERNVLPVLNNLLENREMHLEDGRFL 147 (162)
Q Consensus 121 ~a~~~v~~~L~~lle~r~l~l~~g~~i 147 (162)
+|++++++.|.+++|+|+++-..|+.|
T Consensus 671 kAh~~v~n~llq~lD~GrltDs~Gr~V 697 (898)
T KOG1051|consen 671 KAHPDVLNILLQLLDRGRLTDSHGREV 697 (898)
T ss_pred hcCHHHHHHHHHHHhcCccccCCCcEe
Confidence 999999999999999999987777654
No 72
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.04 E-value=1.9e-10 Score=98.18 Aligned_cols=95 Identities=19% Similarity=0.347 Sum_probs=69.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe--ecCeEEEeccHHHHHhhcCcEEEEeCCCCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI--VNGTAIYYDQSAVRAAIEGRVLILEGIEKA 122 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~--~~G~~~~~~gpl~~A~~~G~vlllDEId~a 122 (162)
-|+||+|+||+|||.|.+.++....+-+ +.+. ..++...|.....- .+|....+.|+++.| +||++.|||+|++
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g-~~~s~~gLta~~~~d~~~~~~~leaGalvla--d~GiccIDe~dk~ 133 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSG-KGSSAAGLTASVSRDPVTGEWVLEAGALVLA--DGGICCIDEFDKM 133 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-SSEE-EEEC-CGSTCCCCCEEECCCGGTSSECEEE-HHHHC--TTSEEEECTTTT-
T ss_pred cceeeccchhhhHHHHHHHHHhhCCceE-EECC-CCcccCCccceeccccccceeEEeCCchhcc--cCceeeecccccc
Confidence 3899999999999999998776654432 3333 34556666543221 245666678888776 9999999999999
Q ss_pred CccHHHHHHHhhcCCeEEEcC
Q psy4122 123 ERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 123 ~~~v~~~L~~lle~r~l~l~~ 143 (162)
+.+....|+++||.+.+.+..
T Consensus 134 ~~~~~~~l~eaMEqq~isi~k 154 (331)
T PF00493_consen 134 KEDDRDALHEAMEQQTISIAK 154 (331)
T ss_dssp -CHHHHHHHHHHHCSCEEECT
T ss_pred cchHHHHHHHHHHcCeeccch
Confidence 999999999999999998875
No 73
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=5.5e-10 Score=96.44 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=56.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~ 121 (162)
..+-|||+||||||||-||+++|+.++..|.++..++- .+.++| .|.- .+..-+.-|= +...++|+||||.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl--VqKYiG-----EGaR-lVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL--VQKYIG-----EGAR-LVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH--HHHHhc-----cchH-HHHHHHHHHhhcCCeEEEEechhh
Confidence 44569999999999999999999999999888877533 334443 2210 0111122222 3357999999987
Q ss_pred CCc-----------cHHHHHHHhhc
Q psy4122 122 AER-----------NVLPVLNNLLE 135 (162)
Q Consensus 122 a~~-----------~v~~~L~~lle 135 (162)
... +|+-.+.+||.
T Consensus 256 Ig~kR~d~~t~gDrEVQRTmleLL~ 280 (406)
T COG1222 256 IGAKRFDSGTSGDREVQRTMLELLN 280 (406)
T ss_pred hhcccccCCCCchHHHHHHHHHHHH
Confidence 433 56666666654
No 74
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.02 E-value=2.4e-09 Score=92.76 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=39.0
Q ss_pred cHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcCC-------cEEecCcc
Q psy4122 102 QSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLEDG-------RFLVSAST 152 (162)
Q Consensus 102 gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~g-------~~i~~~~~ 152 (162)
|.+.+| +.|++-++|+.+++.+.+..|+.+++++.+.++++ ..|+++.|
T Consensus 230 G~l~~a--NrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sN 285 (361)
T smart00763 230 GALNRA--NRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSN 285 (361)
T ss_pred Cccccc--cCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCC
Confidence 444443 66899999999999999999999999999988643 45666554
No 75
>KOG0743|consensus
Probab=99.01 E-value=1.9e-09 Score=95.07 Aligned_cols=61 Identities=18% Similarity=0.331 Sum_probs=54.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKA 122 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a 122 (162)
-||+||||||||+++.++|..+++.++.+++.+-...+||. -|+.+.....||||++||.+
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr---------------~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLR---------------HLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHH---------------HHHHhCCCCcEEEEeecccc
Confidence 79999999999999999999999999999998666667775 57777788899999999876
No 76
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.01 E-value=2.1e-09 Score=96.75 Aligned_cols=107 Identities=11% Similarity=0.127 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+.++......+.+||+||+|||||++|+.+|+.++.+ |-.+..+..+ ...|++ .+...+
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~---eidaas 97 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF---EVDAAS 97 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE---EEcccc
Confidence 477888999888876666567999999999999999999988643 1110000000 001111 111110
Q ss_pred EEEecc--HHHHHh----h--cCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVRAA----I--EGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~A~----~--~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+. .+...+ . ...|++|||+|+++++..+.|+..||+
T Consensus 98 ~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe 145 (509)
T PRK14958 98 RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE 145 (509)
T ss_pred cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc
Confidence 000000 111111 1 225999999999999999999999996
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=3.2e-09 Score=98.09 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+.++......+.+||+||+|||||++|+.+|+.++.. |..+..+... ...|++ .+...+
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi---EIDAAs 96 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI---EIDAAS 96 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE---Eecccc
Confidence 367788888888876666677999999999999999999998752 1111000000 001121 011110
Q ss_pred EEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..=.+. .+...+ ....++||||+++++++..+.|+..||+
T Consensus 97 ~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE 144 (702)
T PRK14960 97 RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE 144 (702)
T ss_pred cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 000000 011111 1236999999999999999999999997
No 78
>CHL00181 cbbX CbbX; Provisional
Probab=99.00 E-value=4.6e-10 Score=94.25 Aligned_cols=83 Identities=14% Similarity=0.303 Sum_probs=52.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC---C----ceEEEEeccCCChhhhcceeEeecCeEEE-eccHHHHHhhcCcEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ---R----EVEYICLSRDTTEADIKQRREIVNGTAIY-YDQSAVRAAIEGRVLI 115 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg---~----p~~~v~~~~~~~~~dL~g~~~~~~G~~~~-~~gpl~~A~~~G~vll 115 (162)
+.|++|+||||||||++|+.+|..+. . ++ +.++ .++|.+.+ . |.+.- ..+.+.+ ..|++|+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~--~~v~----~~~l~~~~--~-g~~~~~~~~~l~~--a~ggVLf 127 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHL--LTVT----RDDLVGQY--I-GHTAPKTKEVLKK--AMGGVLF 127 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCce--EEec----HHHHHHHH--h-ccchHHHHHHHHH--ccCCEEE
Confidence 45799999999999999999998652 1 22 2222 33454321 1 11100 0011112 2478999
Q ss_pred EeCCCCC---------CccHHHHHHHhhcCC
Q psy4122 116 LEGIEKA---------ERNVLPVLNNLLENR 137 (162)
Q Consensus 116 lDEId~a---------~~~v~~~L~~lle~r 137 (162)
|||++.. .+++++.|..+||++
T Consensus 128 IDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 128 IDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred EEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 9999875 457889999999864
No 79
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.99 E-value=1.4e-09 Score=96.76 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC---CceEEEEeccCC---Chhhhccee-EeecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLSRDT---TEADIKQRR-EIVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~~~~---~~~dL~g~~-~~~~G~~~~ 99 (162)
+|.+.+..+.+-+.-...-+||+.|++||||-.+|+++..... .|+..++|..-. =.++|.|+- .--.|...=
T Consensus 147 S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~ 226 (464)
T COG2204 147 SPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITR 226 (464)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccc
Confidence 5655555555544444566999999999999999999997654 599999997432 245566621 000111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcCCc
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLEDGR 145 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~g~ 145 (162)
+.|-+- ..+||.|+||||..+|.++|..|+.+|++|++.--+|+
T Consensus 227 r~G~fE--~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 227 RIGRFE--QANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred cCccee--EcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCC
Confidence 112221 14789999999999999999999999999998765543
No 80
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.99 E-value=3.4e-10 Score=107.06 Aligned_cols=93 Identities=18% Similarity=0.301 Sum_probs=65.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeE---eecCeEEEeccHHHHHhhcCcEEEEeCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRRE---IVNGTAIYYDQSAVRAAIEGRVLILEGIEKA 122 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~---~~~G~~~~~~gpl~~A~~~G~vlllDEId~a 122 (162)
||||+|+||||||.+|+.+++...+... .+. ...+...+.+... ...|.+..+.|+++. ..||+++|||++++
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~y-tsG-~~~s~vgLTa~~~~~d~~tG~~~le~GaLvl--AdgGtL~IDEidkm 569 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIY-TSG-KSSSSVGLTASIKFNESDNGRAMIQPGAVVL--ANGGVCCIDELDKC 569 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCcccc-CCC-CCCccccccchhhhcccccCcccccCCcEEE--cCCCeEEecchhhC
Confidence 8999999999999999999987644321 111 1111112222111 123555556666654 47899999999999
Q ss_pred CccHHHHHHHhhcCCeEEEc
Q psy4122 123 ERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 123 ~~~v~~~L~~lle~r~l~l~ 142 (162)
+++.+..|+++||.+.+.+.
T Consensus 570 s~~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 570 HNESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred CHHHHHHHHHHHhCCEEEEe
Confidence 99999999999999998765
No 81
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.98 E-value=2.7e-09 Score=96.08 Aligned_cols=111 Identities=9% Similarity=0.069 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+-.......||+|+|++||||+++|+++.... +.|+..++|..-.+ .++|.|... --.|....
T Consensus 210 s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~ 289 (520)
T PRK10820 210 SPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEG 289 (520)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccC
Confidence 455555554444444467799999999999999999987653 46888888874322 234555210 00011111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREM 139 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l 139 (162)
..|-+.. .+|+.|+||||+.++++++..|..+++++.+
T Consensus 290 ~~g~~e~--a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~ 327 (520)
T PRK10820 290 KKGFFEQ--ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTF 327 (520)
T ss_pred CCChhhh--cCCCEEEEeChhhCCHHHHHHHHHHHhcCCc
Confidence 2333322 4689999999999999999999999998764
No 82
>KOG0733|consensus
Probab=98.98 E-value=1e-09 Score=100.01 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhcCC-----------CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCe
Q psy4122 28 QDWLSHLRWILQKDNM-----------SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGT 96 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~-----------g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~ 96 (162)
..++..|..|+..+.. .+-+||.||||||||+||+++|..+|.|+..++.. +++.. +.+-+
T Consensus 196 d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp------eivSG--vSGES 267 (802)
T KOG0733|consen 196 DKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP------EIVSG--VSGES 267 (802)
T ss_pred HHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch------hhhcc--cCccc
Confidence 5566667666654322 22489999999999999999999999998766553 33321 11111
Q ss_pred EEEeccHHHHHhhc-CcEEEEeCCCCCCcc-----------HHHHHHHhhc
Q psy4122 97 AIYYDQSAVRAAIE-GRVLILEGIEKAERN-----------VLPVLNNLLE 135 (162)
Q Consensus 97 ~~~~~gpl~~A~~~-G~vlllDEId~a~~~-----------v~~~L~~lle 135 (162)
..=.+.-+-+|... ..++||||||.+.|. +.+-|+..||
T Consensus 268 EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD 318 (802)
T KOG0733|consen 268 EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMD 318 (802)
T ss_pred HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhh
Confidence 00011133445433 468999999998774 4566777777
No 83
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.97 E-value=5.5e-10 Score=81.21 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh--------CCceEEEEeccCCChhhhcceeE------eec-CeEEEeccHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT--------QREVEYICLSRDTTEADIKQRRE------IVN-GTAIYYDQSAVRAA 108 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l--------g~p~~~v~~~~~~~~~dL~g~~~------~~~-G~~~~~~gpl~~A~ 108 (162)
+..++++||||+|||+++++++..+ +.++..+.+....+..++..... ... .+..--...+.+++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4579999999999999999999877 66777788876666666653110 011 11000002344455
Q ss_pred hcC-c-EEEEeCCCCC-CccHHHHHHHhhcCCeEE
Q psy4122 109 IEG-R-VLILEGIEKA-ERNVLPVLNNLLENREMH 140 (162)
Q Consensus 109 ~~G-~-vlllDEId~a-~~~v~~~L~~lle~r~l~ 140 (162)
.+. . +|+|||++.+ +.++++.|..+.++..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~ 118 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIK 118 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEE
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCe
Confidence 444 3 7899999999 999999999998855553
No 84
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.97 E-value=4.4e-09 Score=90.66 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEE--EEec-----cCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEY--ICLS-----RDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~--v~~~-----~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+......+.++|+||+|+|||++|+.+|+.++.+... -.|. ..+ ...|+. .+..++
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~---~~~~~~ 97 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI---EIDAAS 97 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE---Eecccc
Confidence 477788888888765555557999999999999999999988632100 0000 000 000111 011111
Q ss_pred EEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
....+. .+...+ ....+++|||+++++.+.++.|+..+|+
T Consensus 98 ~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe 145 (363)
T PRK14961 98 RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (363)
T ss_pred cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc
Confidence 000000 111111 1235999999999999999999999996
No 85
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.96 E-value=8.8e-10 Score=78.12 Aligned_cols=89 Identities=19% Similarity=0.105 Sum_probs=51.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEeccCCChhhh------cceeEeecCeEEEeccHHHHHhhcC-cE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSRDTTEADI------KQRREIVNGTAIYYDQSAVRAAIEG-RV 113 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~~~~~~dL------~g~~~~~~G~~~~~~gpl~~A~~~G-~v 113 (162)
+.+++|+||||||||++++.+|..++.+ +.++.+......... ............-....+..|-... .+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999998876 555555422221111 0000000000000011122222333 89
Q ss_pred EEEeCCCCCCccHHHHHHH
Q psy4122 114 LILEGIEKAERNVLPVLNN 132 (162)
Q Consensus 114 lllDEId~a~~~v~~~L~~ 132 (162)
+++||+++........+..
T Consensus 82 iiiDei~~~~~~~~~~~~~ 100 (148)
T smart00382 82 LILDEITSLLDAEQEALLL 100 (148)
T ss_pred EEEECCcccCCHHHHHHHH
Confidence 9999999988877665443
No 86
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=2.6e-09 Score=95.42 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccC---CChhhhcceeEeecCeEEE
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRD---TTEADIKQRREIVNGTAIY 99 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~---~~~~dL~g~~~~~~G~~~~ 99 (162)
.+|.+...++.+-.-....-+|||.|.+||||--+|+++.+.. ..|+..+||..- .-.++|.|.
T Consensus 228 ~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH---------- 297 (550)
T COG3604 228 RSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH---------- 297 (550)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcc----------
Confidence 3777777777665544456689999999999999999998765 578999999733 336778773
Q ss_pred eccHHHHH---------hhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcCC
Q psy4122 100 YDQSAVRA---------AIEGRVLILEGIEKAERNVLPVLNNLLENREMHLEDG 144 (162)
Q Consensus 100 ~~gpl~~A---------~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~g 144 (162)
+.|+++-| +.+||.|+||||-.+|.+++..|+.+|++|++.=-+|
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred cccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCC
Confidence 22233222 3578999999999999999999999999999965443
No 87
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=3.4e-09 Score=100.45 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE-----EEEeccCCChhhhcc--eeEeecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE-----YICLSRDTTEADIKQ--RREIVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~-----~v~~~~~~~~~dL~g--~~~~~~G~~~~ 99 (162)
-...++.|+.++......+.+||+||||||||++|+.||+.++.+.. ...|+.-....+... -..+ ++....
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi-dAas~~ 99 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV-DAASRT 99 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe-cccccc
Confidence 36778888888887666645689999999999999999998875310 011110000111000 0001 111000
Q ss_pred -ec--cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 100 -YD--QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 100 -~~--gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+ .-+...+ ....|+||||+++++++.++.|+..||+
T Consensus 100 kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE 145 (944)
T PRK14949 100 KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE 145 (944)
T ss_pred CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc
Confidence 00 0111111 1235999999999999999999999996
No 88
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.94 E-value=4e-09 Score=96.86 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccC-CChhh----hcceeEe-----------ecCeE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRD-TTEAD----IKQRREI-----------VNGTA 97 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~-~~~~d----L~g~~~~-----------~~G~~ 97 (162)
..+++|+||||||||++|+.++... +.++..+++... .+..+ +++.... .-|..
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~ 254 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVP 254 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCC
Confidence 4589999999999999999988655 234555665421 12222 2221000 00111
Q ss_pred EEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 98 IYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 98 ~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
...++.+.. .+|++|+|||++.++++.+..|..+++++++.+.
T Consensus 255 ~~~~g~v~~--asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~ 297 (615)
T TIGR02903 255 EPKTGLVTD--AHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFS 297 (615)
T ss_pred chhcCchhh--cCCCeEEEeccccCCHHHHHHHHHHHhhCeEEee
Confidence 112222222 2678999999999999999999999999876553
No 89
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=6.1e-09 Score=94.55 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEE-ec--cCCChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYIC-LS--RDTTEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~-~~--~~~~~~dL~g~~~~~~G~ 96 (162)
-+..++.|+..+......+.+||+||+|||||++|+.+|+.++.. +-.+. |. ......|++. +...+
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie---idaas 97 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE---IDAAS 97 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE---eeccc
Confidence 366777888888765555458899999999999999999987641 11110 00 0001112211 10000
Q ss_pred -EEEec-cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 97 -AIYYD-QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 97 -~~~~~-gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
..-.+ ..+...+ .+..+++|||+++++.+.++.|+..||+.
T Consensus 98 ~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep 146 (546)
T PRK14957 98 RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP 146 (546)
T ss_pred ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC
Confidence 00000 0111111 13369999999999999999999999973
No 90
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=7e-09 Score=93.46 Aligned_cols=125 Identities=14% Similarity=0.193 Sum_probs=72.2
Q ss_pred cceeceeeee-cccCCCCCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE------EEEec--c
Q psy4122 9 EYVRFTLIYL-FSVNTDALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE------YICLS--R 79 (162)
Q Consensus 9 ~y~~~~~~~~-~~~~~~~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~------~v~~~--~ 79 (162)
.|..+.+-|= .+-....--+...+.|+..+......+.+||+||+|||||++|+.+|+.++.... ...|+ .
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~ 86 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT 86 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh
Confidence 5666655441 1111111246778888887766555568999999999999999999998865210 00000 0
Q ss_pred ------CCChhhhcceeEeecCeEEEecc--HHHHH------hhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 80 ------DTTEADIKQRREIVNGTAIYYDQ--SAVRA------AIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 80 ------~~~~~dL~g~~~~~~G~~~~~~g--pl~~A------~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+..-.|++ .+...+..-++. .+... ..+..+++|||+++++.+.++.|+..+|+
T Consensus 87 ~C~~i~~~~h~Dv~---eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 87 NCISFNNHNHPDII---EIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred HHHHHhcCCCCcEE---EeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 00000111 011100000000 01111 12457999999999999999999999996
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=5.4e-09 Score=96.46 Aligned_cols=107 Identities=11% Similarity=0.133 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc------------eEEEEeccCC---ChhhhcceeE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE------------VEYICLSRDT---TEADIKQRRE 91 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p------------~~~v~~~~~~---~~~dL~g~~~ 91 (162)
-+...+.|+.++......+.+||+||+|||||++|+.+|+.++.. |-.+..+..+ +..|++ .
T Consensus 21 Qe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDvi---E 97 (700)
T PRK12323 21 QEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYI---E 97 (700)
T ss_pred cHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcce---E
Confidence 477888899998877776667999999999999999999988751 1101000000 001121 1
Q ss_pred eecCeEEEecc--HHHHHh----hc--CcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 92 IVNGTAIYYDQ--SAVRAA----IE--GRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 92 ~~~G~~~~~~g--pl~~A~----~~--G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+...+..-++. -+.+.+ .. ..|+||||+|+++.+..+.|+..||+
T Consensus 98 IdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE 150 (700)
T PRK12323 98 MDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE 150 (700)
T ss_pred ecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc
Confidence 11110000000 011111 12 25999999999999999999999997
No 92
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.92 E-value=3.2e-09 Score=92.74 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+......+.++++.|++||||+++|+.+... .+.|+..++|..... .+.|.|... ...|....
T Consensus 149 S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~ 228 (457)
T PRK11361 149 SPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228 (457)
T ss_pred cHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCC
Confidence 45556666666665666779999999999999999998765 356888888874321 233444210 01121111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|.+.. .+||+|+||||+.++++++..|..+++++.+.-
T Consensus 229 ~~g~~~~--a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~ 268 (457)
T PRK11361 229 RQGLFER--ANEGTLLLDEIGEMPLVLQAKLLRILQEREFER 268 (457)
T ss_pred CCCceEE--CCCCEEEEechhhCCHHHHHHHHHHHhcCcEEe
Confidence 2233222 368999999999999999999999999887654
No 93
>PRK12377 putative replication protein; Provisional
Probab=98.92 E-value=3.3e-09 Score=87.65 Aligned_cols=99 Identities=23% Similarity=0.325 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCC-CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhccee--EeecCeEEEeccH
Q psy4122 30 WLSHLRWILQKDNM-SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRR--EIVNGTAIYYDQS 103 (162)
Q Consensus 30 ~~~~L~~i~~~~~~-g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~--~~~~G~~~~~~gp 103 (162)
.+...+.++..+.. ..+++|+||||||||+||.++|..+ |..+.++++. +++... ...++. ...-
T Consensus 86 a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~------~l~~~l~~~~~~~~---~~~~ 156 (248)
T PRK12377 86 ALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP------DVMSRLHESYDNGQ---SGEK 156 (248)
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH------HHHHHHHHHHhccc---hHHH
Confidence 45555555555443 2579999999999999999999766 5555544442 333210 011111 1113
Q ss_pred HHHHhhcCcEEEEeCC--CCCCccHHHHHHHhhcCC
Q psy4122 104 AVRAAIEGRVLILEGI--EKAERNVLPVLNNLLENR 137 (162)
Q Consensus 104 l~~A~~~G~vlllDEI--d~a~~~v~~~L~~lle~r 137 (162)
+.+.+.+-.+|+|||+ .+.++...+.|.++++.|
T Consensus 157 ~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R 192 (248)
T PRK12377 157 FLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRR 192 (248)
T ss_pred HHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 5677788899999999 556777889999999865
No 94
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.91 E-value=4.6e-09 Score=91.65 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC---CceEEEEeccCCC---hhhhcceeE-eecCeEEEeccHHHHHhhcCcEE
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLSRDTT---EADIKQRRE-IVNGTAIYYDQSAVRAAIEGRVL 114 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~~~gpl~~A~~~G~vl 114 (162)
....++++.|++||||+++|+.+....+ .|+..++|..-.+ .+.|.|... .-.|......|.+.. .+||.|
T Consensus 160 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~--a~~gtl 237 (445)
T TIGR02915 160 PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY--AHGGTL 237 (445)
T ss_pred CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE--CCCCEE
Confidence 3567999999999999999999987654 5778888874321 233344210 001211222232322 368999
Q ss_pred EEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 115 ILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 115 llDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
+||||+.++++++..|..+++++.+.-.+
T Consensus 238 ~l~~i~~l~~~~q~~l~~~l~~~~~~~~~ 266 (445)
T TIGR02915 238 FLDEIGDLPLNLQAKLLRFLQERVIERLG 266 (445)
T ss_pred EEechhhCCHHHHHHHHHHHhhCeEEeCC
Confidence 99999999999999999999998765443
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1e-08 Score=92.09 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEE---------------EEec--cCCC
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEY---------------ICLS--RDTT 82 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~---------------v~~~--~~~~ 82 (162)
-+...+.|+..+......+++||+||+|+|||++|+.+|+.++. |+-. +.++ ..+.
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~ 97 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTS 97 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCC
Confidence 36778888888877666678999999999999999999987742 1111 1111 1111
Q ss_pred hhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 83 EADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 83 ~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..++.. +.+ .. ...|+ ..+..++||||++.++.+.++.|+..||+
T Consensus 98 vddIR~---Iie-~~--~~~P~---~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 98 VDDIKV---ILE-NS--CYLPI---SSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred HHHHHH---HHH-HH--Hhccc---cCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 112110 000 00 00010 12447999999999999999999999996
No 96
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.90 E-value=5.7e-09 Score=84.92 Aligned_cols=97 Identities=18% Similarity=0.265 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
+...+..++.+.... .+.+++|+||+|||||||+.++++.. |..+.++.+..... . . .-
T Consensus 29 n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~---~-------------~-~~ 90 (235)
T PRK08084 29 NDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW---F-------------V-PE 90 (235)
T ss_pred cHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh---h-------------h-HH
Confidence 456777777776544 34589999999999999999998754 34455555542110 0 0 01
Q ss_pred HHHHhhcCcEEEEeCCCCCCccH------HHHHHHhhcCC--eEEE
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNV------LPVLNNLLENR--EMHL 141 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v------~~~L~~lle~r--~l~l 141 (162)
+.+.+..-.+|+||||++.+.+. ...++.+.|++ .+.+
T Consensus 91 ~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ 136 (235)
T PRK08084 91 VLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLI 136 (235)
T ss_pred HHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 22333444789999999986543 56777887765 3544
No 97
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=9.7e-09 Score=89.56 Aligned_cols=109 Identities=11% Similarity=0.062 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEE----------EEeccCCC-hhhhc-c----ee
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEY----------ICLSRDTT-EADIK-Q----RR 90 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~----------v~~~~~~~-~~dL~-g----~~ 90 (162)
-+...+.|+.++......+.++|+||||||||++|+.+|+.++.+-.. -.|. ... -.++. | ..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~-~c~~c~~~~~~~~~n~~ 99 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG-ECESCRDFDAGTSLNIS 99 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC-CCHHHHHHhcCCCCCeE
Confidence 467788888888876666569999999999999999999988653100 0000 000 00000 0 00
Q ss_pred EeecCeEEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 91 EIVNGTAIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 91 ~~~~G~~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+.++...=.+. -+...+ .+..++||||+++++.+.++.|+..+|+
T Consensus 100 ~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe 153 (397)
T PRK14955 100 EFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE 153 (397)
T ss_pred eecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc
Confidence 011111000000 011122 2346999999999999999999999996
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=7.1e-09 Score=95.71 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+..++.|+..+......+.+||+||+|||||++|+.+|+.++.. |-.+..+..+ ...|++ .+ ++.
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~i---ei-daa 96 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLI---EI-DAA 96 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCce---ee-ccc
Confidence 367788888888765555456899999999999999999988653 1100000000 001111 01 111
Q ss_pred E-EEec--cHHHHHh----hcC--cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 A-IYYD--QSAVRAA----IEG--RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~-~~~~--gpl~~A~----~~G--~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
. .=.+ .-+...+ .+| .|+||||+|+++.+.++.|+..||+
T Consensus 97 s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE 145 (647)
T PRK07994 97 SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (647)
T ss_pred ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc
Confidence 0 0000 0111111 122 5999999999999999999999997
No 99
>PRK08116 hypothetical protein; Validated
Probab=98.89 E-value=5.1e-09 Score=87.11 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcC----CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 30 WLSHLRWILQKDN----MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 30 ~~~~L~~i~~~~~----~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
.....+..+..+. .+.+++|+|+||+|||+||.++|+.+ +.++.+++...- ..++... . ++...+...
T Consensus 96 a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~l--l~~i~~~--~-~~~~~~~~~ 170 (268)
T PRK08116 96 AYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQL--LNRIKST--Y-KSSGKEDEN 170 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH--HHHHHHH--H-hccccccHH
Confidence 4445555555432 23459999999999999999999764 667666654311 1122211 1 111112223
Q ss_pred HHHHHhhcCcEEEEeCC--CCCCccHHHHHHHhhcCC
Q psy4122 103 SAVRAAIEGRVLILEGI--EKAERNVLPVLNNLLENR 137 (162)
Q Consensus 103 pl~~A~~~G~vlllDEI--d~a~~~v~~~L~~lle~r 137 (162)
-+.+++.+..+|+|||+ ++..+..+..|..+++.|
T Consensus 171 ~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r 207 (268)
T PRK08116 171 EIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSR 207 (268)
T ss_pred HHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHH
Confidence 46677788899999999 566777888888888854
No 100
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.89 E-value=3.4e-09 Score=79.17 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=55.7
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCc
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGR 112 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~ 112 (162)
.+-.......||+|+|++||||+++|+.++...+.. +..+.|.. +. .+ +... .+|+
T Consensus 13 ~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-~~-~~------------------~l~~-a~~g 71 (138)
T PF14532_consen 13 QLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-LP-AE------------------LLEQ-AKGG 71 (138)
T ss_dssp HHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-TC-HH------------------HHHH-CTTS
T ss_pred HHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-Cc-HH------------------HHHH-cCCC
Confidence 333333456799999999999999999999877652 22222321 11 11 2222 2888
Q ss_pred EEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 113 VLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 113 vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.++|+||+.++++.+..|...+++
T Consensus 72 tL~l~~i~~L~~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 72 TLYLKNIDRLSPEAQRRLLDLLKR 95 (138)
T ss_dssp EEEEECGCCS-HHHHHHHHHHHHH
T ss_pred EEEECChHHCCHHHHHHHHHHHHh
Confidence 999999999999999999999985
No 101
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.88 E-value=1.6e-08 Score=88.56 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcC---------CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCC---------Chhhhcce
Q psy4122 28 QDWLSHLRWILQKDN---------MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDT---------TEADIKQR 89 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~---------~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~---------~~~dL~g~ 89 (162)
+..++.|+.++.... ..+.+||+||+|+|||++|+.+|+.+..+-..-.++... +-.|+.-
T Consensus 11 ~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~- 89 (394)
T PRK07940 11 EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRV- 89 (394)
T ss_pred HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEE-
Confidence 567788888888754 455699999999999999999998775431000000000 0111110
Q ss_pred eEeecCeEEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 90 REIVNGTAIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 90 ~~~~~G~~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
...+|.....+. .+.+.+ ....|++|||+++++++..+.|+..||+
T Consensus 90 -i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe 143 (394)
T PRK07940 90 -VAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE 143 (394)
T ss_pred -eccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc
Confidence 001122111111 111111 1225899999999999999999999997
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.88 E-value=3.8e-09 Score=98.53 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=55.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCeEEEecc--HHHHHh-hc-
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ--SAVRAA-IE- 110 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g--pl~~A~-~~- 110 (162)
.|++|+||||||||++|+.+|..+ +..+..+. .+.++...... | .|+.. .+...+ .+
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~------~~~l~a~~~~~-g--~~e~~l~~i~~~~~~~~ 274 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD------MGSLLAGTKYR-G--DFEERLKAVVSEIEKEP 274 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec------HHHHhhhcccc-c--hHHHHHHHHHHHHhccC
Confidence 489999999999999999999876 33333222 22333100000 1 11110 112222 22
Q ss_pred CcEEEEeCCCCCC---------ccHHHHHHHhhcCCeEEEc
Q psy4122 111 GRVLILEGIEKAE---------RNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 111 G~vlllDEId~a~---------~~v~~~L~~lle~r~l~l~ 142 (162)
+.+|+|||||.+. .++.+.|.+.|++|++.+-
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~I 315 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCI 315 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEE
Confidence 4689999999763 3568899999999988764
No 103
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.87 E-value=7.8e-09 Score=90.91 Aligned_cols=115 Identities=14% Similarity=0.152 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+..+.+-.....+.++++.|++||||+++|+.++... +.|+..++|..-.. .++|.|... .-.|....
T Consensus 144 s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~ 223 (469)
T PRK10923 144 APAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTI 223 (469)
T ss_pred CHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcC
Confidence 344444444443333456799999999999999999998765 46888888863311 344444210 00111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
..|-+.. .+||.++||||+.++++++..|..+++++++.-.+
T Consensus 224 ~~g~~~~--a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~ 265 (469)
T PRK10923 224 RQGRFEQ--ADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVG 265 (469)
T ss_pred CCCCeeE--CCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCC
Confidence 2222222 36889999999999999999999999998876543
No 104
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=1.1e-08 Score=95.58 Aligned_cols=107 Identities=13% Similarity=0.174 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCCC---hhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDTT---EADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~~---~~dL~g~~~~~~G~ 96 (162)
-+..++.|+..+......+.+||+||+|||||++++.||+.++.. |-.+..+..+. ..|++ .+...+
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi---EIDAas 97 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV---EMDAAS 97 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE---Eecccc
Confidence 477888888888766555567999999999999999999988753 11000000000 01111 111111
Q ss_pred EEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+. -+++.+ .+..|+||||+|+++.+..+.|+..||+
T Consensus 98 ~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE 145 (830)
T PRK07003 98 NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE 145 (830)
T ss_pred cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh
Confidence 000000 011111 1246999999999999999999999996
No 105
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.86 E-value=5.5e-09 Score=93.74 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=46.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~ 121 (162)
..+.+||+||||||||.+|+++|+.++.|+..+.++.- .+.++|. +..-....+..|- ....||+|||||+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l--~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKL--FGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHh--cccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhh
Confidence 34679999999999999999999999999887766421 1111110 0000001121222 2457999999997
Q ss_pred CC
Q psy4122 122 AE 123 (162)
Q Consensus 122 a~ 123 (162)
+.
T Consensus 330 ~~ 331 (489)
T CHL00195 330 AF 331 (489)
T ss_pred hh
Confidence 53
No 106
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.86 E-value=9e-09 Score=85.90 Aligned_cols=110 Identities=18% Similarity=0.237 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEeccCCChhhhcc---eeEee-cCeEE
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSRDTTEADIKQ---RREIV-NGTAI 98 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~~~~~~dL~g---~~~~~-~G~~~ 98 (162)
+|.++.+....|-.-...++|+||+||+|||||.+++.+-..+... ...++++..|++..+.. ....+ .|. .
T Consensus 15 pT~dt~r~~~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-~ 93 (272)
T PF12775_consen 15 PTVDTVRYSYLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGR-V 93 (272)
T ss_dssp --HHHHHHHHHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTE-E
T ss_pred CcHHHHHHHHHHHHHHHcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCC-C
Confidence 4555555544333333468899999999999999999876555433 23566677666655432 11112 233 3
Q ss_pred EeccHHHHHhhcCcEEEEeCCCCCCcc------HHHHHHHhhcCCeEEE
Q psy4122 99 YYDQSAVRAAIEGRVLILEGIEKAERN------VLPVLNNLLENREMHL 141 (162)
Q Consensus 99 ~~~gpl~~A~~~G~vlllDEId~a~~~------v~~~L~~lle~r~l~l 141 (162)
| ||- ..+.-++++|++|...+| .++.|.+++|.+-+.-
T Consensus 94 ~--gP~---~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd 137 (272)
T PF12775_consen 94 Y--GPP---GGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYD 137 (272)
T ss_dssp E--EEE---SSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEEC
T ss_pred C--CCC---CCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCccc
Confidence 3 341 123358899999987654 5799999999776543
No 107
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.85 E-value=5.9e-09 Score=90.84 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEE-eccHHHHHhh-cCcEEEEeCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIY-YDQSAVRAAI-EGRVLILEGIEK 121 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~-~~gpl~~A~~-~G~vlllDEId~ 121 (162)
.+.+||+||||||||++|+++|..++.++..+.++ ++...+ -|...+ ....+..|-. .+++|+|||||.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~------~l~~~~---~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~ 235 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS------ELVQKF---IGEGARLVRELFELAREKAPSIIFIDEIDA 235 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH------HHhHhh---ccchHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 35699999999999999999999999997776554 232110 011000 0011222222 357999999998
Q ss_pred C-----------CccHHHHHHHhhc
Q psy4122 122 A-----------ERNVLPVLNNLLE 135 (162)
Q Consensus 122 a-----------~~~v~~~L~~lle 135 (162)
+ +++++..|..++.
T Consensus 236 l~~~r~~~~~~~~~~~~~~l~~lL~ 260 (389)
T PRK03992 236 IAAKRTDSGTSGDREVQRTLMQLLA 260 (389)
T ss_pred hhcccccCCCCccHHHHHHHHHHHH
Confidence 6 3455666666663
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=2e-08 Score=90.76 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+......+.+||+||+|||||++|+.+|+.++.+ +-.+..+..+ ...|++ .+..++
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~---ei~~~~ 97 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI---EVDAAS 97 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee---Eeeccc
Confidence 467788888888876666567999999999999999999988642 2111000000 011121 111110
Q ss_pred EEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+. -+...+ .+..++||||+|+++.+..+.|+..||+
T Consensus 98 ~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe 145 (527)
T PRK14969 98 NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE 145 (527)
T ss_pred cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC
Confidence 000000 011111 1236999999999999999999999997
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.8e-08 Score=95.38 Aligned_cols=107 Identities=13% Similarity=0.089 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEEE-Eec----cCCChhhhcceeEeec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEYI-CLS----RDTTEADIKQRREIVN 94 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~v-~~~----~~~~~~dL~g~~~~~~ 94 (162)
-+...+.|+.++......+.+||+||+|||||++|+.||+.++. ||-.+ +|. ..-..-|++ .+..
T Consensus 20 qe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~---eida 96 (824)
T PRK07764 20 QEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT---EIDA 96 (824)
T ss_pred cHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE---Eecc
Confidence 36678889988887666656899999999999999999998863 22111 010 000011111 1111
Q ss_pred CeEEEecc--HHHH-----Hh-hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 95 GTAIYYDQ--SAVR-----AA-IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 95 G~~~~~~g--pl~~-----A~-~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
++..=++. -+.+ .+ ....|+||||+|+++.+.++.|+..||+
T Consensus 97 as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 97 ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 11000000 0110 11 2346999999999999999999999996
No 110
>CHL00176 ftsH cell division protein; Validated
Probab=98.84 E-value=1.4e-08 Score=93.78 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=45.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~a 122 (162)
.+++||+||||||||++|+++|...+.|+..++++.-. +...| .+.... ..-+.+|.. ...+|+|||||.+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~--~~~~g-----~~~~~v-r~lF~~A~~~~P~ILfIDEID~l 287 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFV--EMFVG-----VGAARV-RDLFKKAKENSPCIVFIDEIDAV 287 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHH--HHhhh-----hhHHHH-HHHHHHHhcCCCcEEEEecchhh
Confidence 34799999999999999999999999998777664211 11111 010000 011233332 2368999999887
Q ss_pred C
Q psy4122 123 E 123 (162)
Q Consensus 123 ~ 123 (162)
.
T Consensus 288 ~ 288 (638)
T CHL00176 288 G 288 (638)
T ss_pred h
Confidence 3
No 111
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.6e-08 Score=93.09 Aligned_cols=106 Identities=10% Similarity=0.148 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc------------eEEE-Eec--cCCChhhhcceeE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE------------VEYI-CLS--RDTTEADIKQRRE 91 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p------------~~~v-~~~--~~~~~~dL~g~~~ 91 (162)
-+...+.|+.++......+.+||+||+|||||++|+.+|+.++.. |-.+ +|. ..-...|++ .
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~---e 97 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYT---E 97 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCcee---e
Confidence 467888999998877666567999999999999999999988641 1110 000 000001111 0
Q ss_pred eecCeEEE-ecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 92 IVNGTAIY-YDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 92 ~~~G~~~~-~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+ ++.... .+. -+.+.+ ....|++|||+|+++.+..+.|+..||+
T Consensus 98 l-daas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE 150 (618)
T PRK14951 98 L-DAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE 150 (618)
T ss_pred c-CcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc
Confidence 1 111000 000 011111 1236999999999999999999999996
No 112
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.2e-08 Score=84.50 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
....+..++...+.+..+++++|+||||+|||+||-++|..+ |..+.++.+... .++|... ..+|. .+.-
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el--~~~Lk~~--~~~~~---~~~~ 160 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDL--LSKLKAA--FDEGR---LEEK 160 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHH--HHHHHHH--HhcCc---hHHH
Confidence 455666777777666678899999999999999999999654 555665555422 2333321 11122 1224
Q ss_pred HHHHhhcCcEEEEeCCCC--CCccHHHHHHHhhc
Q psy4122 104 AVRAAIEGRVLILEGIEK--AERNVLPVLNNLLE 135 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~--a~~~v~~~L~~lle 135 (162)
+.+.+++-.+|||||+-. ..+...+.+.+++.
T Consensus 161 l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~ 194 (254)
T COG1484 161 LLRELKKVDLLIIDDIGYEPFSQEEADLLFQLIS 194 (254)
T ss_pred HHHHhhcCCEEEEecccCccCCHHHHHHHHHHHH
Confidence 667788899999999966 44434566666555
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=2.2e-08 Score=92.09 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE--EEEecc-----CC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE--YICLSR-----DT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~--~v~~~~-----~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+.++........+||+||+|||||++|+.+|+.++.+-. ...|+. .+ ...|++ .+ ++.
T Consensus 21 Qe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~---eI-d~a 96 (624)
T PRK14959 21 QETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV---EI-DGA 96 (624)
T ss_pred CHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE---EE-ecc
Confidence 46778888888876655567889999999999999999998864210 000100 00 000111 01 110
Q ss_pred -EEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 -AIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 -~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+. -+.+.+ ....++||||+++++.+.++.|+..||+
T Consensus 97 ~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE 145 (624)
T PRK14959 97 SNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE 145 (624)
T ss_pred cccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc
Confidence 000000 011111 1236999999999999999999999986
No 114
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=1.1e-08 Score=84.32 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCC-CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhccee--EeecCeEEEecc
Q psy4122 29 DWLSHLRWILQKDNMS-QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRR--EIVNGTAIYYDQ 102 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g-~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~--~~~~G~~~~~~g 102 (162)
..+..++..+.....+ .+++|.|+||||||+|+.++|..+ |..+.++. ..+++... ...... ....
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it------~~~l~~~l~~~~~~~~--~~~~ 154 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT------VADIMSAMKDTFSNSE--TSEE 154 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE------HHHHHHHHHHHHhhcc--ccHH
Confidence 3566666666654432 489999999999999999999776 55555553 34444210 011111 1122
Q ss_pred HHHHHhhcCcEEEEeCCCCCCcc--HHHHHHHhhcCC
Q psy4122 103 SAVRAAIEGRVLILEGIEKAERN--VLPVLNNLLENR 137 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a~~~--v~~~L~~lle~r 137 (162)
.+.+.+..-.+|+|||+.....+ ..+.|+++++.|
T Consensus 155 ~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~R 191 (244)
T PRK07952 155 QLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRR 191 (244)
T ss_pred HHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 45666777889999999776544 456888898865
No 115
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.83 E-value=1e-08 Score=91.64 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~a 122 (162)
.+.+||+||||||||++|+.+|...+.|+..+++. ++...+ .+....-....+..|.. .+.+|+|||||.+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~------~~~~~~--~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l 159 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGS------DFVEMF--VGVGASRVRDLFEQAKKNAPCIIFIDEIDAV 159 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHH------HHHHHH--hcccHHHHHHHHHHHHhcCCCEEEEechhhh
Confidence 45799999999999999999999999997766543 222100 00000000112233332 3479999999886
Q ss_pred C
Q psy4122 123 E 123 (162)
Q Consensus 123 ~ 123 (162)
.
T Consensus 160 ~ 160 (495)
T TIGR01241 160 G 160 (495)
T ss_pred h
Confidence 4
No 116
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=2.6e-08 Score=92.44 Aligned_cols=107 Identities=15% Similarity=0.167 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce-------EEEEeccCCC---hhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV-------EYICLSRDTT---EADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~-------~~v~~~~~~~---~~dL~g~~~~~~G~ 96 (162)
-...++.|+..+......+.+||+||+|||||++|+.+|+.++.+- ..+..+..+. ..|++ .+...+
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl---EidaAs 97 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL---EIDAAS 97 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE---EEeccc
Confidence 4677888888888766666789999999999999999999886531 1111000000 11221 111111
Q ss_pred EEEecc--HHHHH------hhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVRA------AIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~A------~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+. -++.. ..+..++||||+++++.+..+.|+..||+
T Consensus 98 ~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE 145 (709)
T PRK08691 98 NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE 145 (709)
T ss_pred cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh
Confidence 000000 01111 12346999999999999999999999986
No 117
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.82 E-value=2.6e-09 Score=83.90 Aligned_cols=99 Identities=18% Similarity=0.268 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhcceeE--eecCeEEEecc
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIKQRRE--IVNGTAIYYDQ 102 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~g~~~--~~~G~~~~~~g 102 (162)
...+..+.. ......+++++|.||||+|||+||.+++.. .|.++.++... +|+.... ..++. ..
T Consensus 32 ~~~~~~l~~-~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~------~L~~~l~~~~~~~~----~~ 100 (178)
T PF01695_consen 32 KAQIAQLAA-LEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS------DLLDELKQSRSDGS----YE 100 (178)
T ss_dssp --HHHHHHH-H-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH------HHHHHHHCCHCCTT----HC
T ss_pred HHHHHHHhc-CCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC------ceeccccccccccc----hh
Confidence 444444422 223335789999999999999999999853 37777776653 4443111 11121 12
Q ss_pred HHHHHhhcCcEEEEeCCCCC--CccHHHHHHHhhcCC
Q psy4122 103 SAVRAAIEGRVLILEGIEKA--ERNVLPVLNNLLENR 137 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a--~~~v~~~L~~lle~r 137 (162)
-+.+.+.+-.+|||||+-.. .+...+.|..+++.|
T Consensus 101 ~~~~~l~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R 137 (178)
T PF01695_consen 101 ELLKRLKRVDLLILDDLGYEPLSEWEAELLFEIIDER 137 (178)
T ss_dssp HHHHHHHTSSCEEEETCTSS---HHHHHCTHHHHHHH
T ss_pred hhcCccccccEecccccceeeecccccccchhhhhHh
Confidence 35677888899999999654 445667777777754
No 118
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=3.1e-08 Score=89.26 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--eE--EEEeccCC-----ChhhhcceeEeecCeEE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--VE--YICLSRDT-----TEADIKQRREIVNGTAI 98 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--~~--~v~~~~~~-----~~~dL~g~~~~~~G~~~ 98 (162)
+...+.|+.++.+...++.+||+||||||||++|+.+|+.++.. .. .-.|+.-. .-.|+. .+...+..
T Consensus 20 ~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~---el~~~~~~ 96 (504)
T PRK14963 20 EHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL---EIDAASNN 96 (504)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE---EecccccC
Confidence 56778888888877666556999999999999999999887531 00 00111000 000111 01000000
Q ss_pred Eecc--HHHH------HhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 99 YYDQ--SAVR------AAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 99 ~~~g--pl~~------A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
=.+. -+.. ...+..++||||+++++.+.++.|...+++
T Consensus 97 ~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe 142 (504)
T PRK14963 97 SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE 142 (504)
T ss_pred CHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh
Confidence 0000 0111 112346999999999999999999999987
No 119
>KOG0989|consensus
Probab=98.81 E-value=5.4e-09 Score=88.81 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc----eEEEEeccCCChhhhcceeEeecCeEEEec--
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE----VEYICLSRDTTEADIKQRREIVNGTAIYYD-- 101 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p----~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~-- 101 (162)
++++..|..-+.. ...-++|++||||||||+.|.++|++++-| +..+..+ .+|-.|.-......-.|..
T Consensus 42 e~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln----aSderGisvvr~Kik~fakl~ 116 (346)
T KOG0989|consen 42 EHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN----ASDERGISVVREKIKNFAKLT 116 (346)
T ss_pred HHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc----ccccccccchhhhhcCHHHHh
Confidence 5666667766665 333489999999999999999999988763 3333333 2233331101000000000
Q ss_pred ----cHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 ----QSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 ----gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
++.-.-..-=.+++|||.|.+..+.+++|...+|+
T Consensus 117 ~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~ 155 (346)
T KOG0989|consen 117 VLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED 155 (346)
T ss_pred hccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc
Confidence 00000000116999999999999999999999996
No 120
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.81 E-value=3.7e-08 Score=76.87 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEE-Eec--cCCChhhhcceeEeecCeEEEec
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYI-CLS--RDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v-~~~--~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
+.|+..+......+.+||+||+|+|||++|+.+++.+..+ +... +|. ..-...|+.. ....+...-.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~--~~~~~~~~~~~ 79 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHR--LEPEGQSIKVD 79 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEE--eccccCcCCHH
Confidence 3566666665555679999999999999999999876432 1000 000 0000001100 00001000000
Q ss_pred c--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 Q--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
. .+...+ ....+++|||+++++++.++.|+..+|+
T Consensus 80 ~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~ 122 (188)
T TIGR00678 80 QVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEE 122 (188)
T ss_pred HHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcC
Confidence 0 011111 1236999999999999999999999986
No 121
>PRK08181 transposase; Validated
Probab=98.80 E-value=1e-08 Score=85.64 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhcceeE--eecCeEEEe
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIKQRRE--IVNGTAIYY 100 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~g~~~--~~~G~~~~~ 100 (162)
++......+...-.....+++++|+||||||||+|+.++|.. .|+.+.+++. .+|+.... ..++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~------~~L~~~l~~a~~~~~---- 157 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT------TDLVQKLQVARRELQ---- 157 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH------HHHHHHHHHHHhCCc----
Confidence 345555555433112235679999999999999999999853 3666665554 34442110 01111
Q ss_pred ccHHHHHhhcCcEEEEeCCCCCCcc--HHHHHHHhhcC
Q psy4122 101 DQSAVRAAIEGRVLILEGIEKAERN--VLPVLNNLLEN 136 (162)
Q Consensus 101 ~gpl~~A~~~G~vlllDEId~a~~~--v~~~L~~lle~ 136 (162)
.....+.+.+-.+|+|||+...+.+ ....|.++++.
T Consensus 158 ~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~ 195 (269)
T PRK08181 158 LESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISA 195 (269)
T ss_pred HHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHH
Confidence 1124455677789999999876554 34567777764
No 122
>PRK06620 hypothetical protein; Validated
Probab=98.80 E-value=2e-08 Score=80.96 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCC---CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHH
Q psy4122 28 QDWLSHLRWILQKDNMS---QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g---~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl 104 (162)
....+.++.+...+..+ .+++|+||||||||||++.+++..+..+ +. +... .+
T Consensus 25 ~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~--------~~~~-----------~~--- 80 (214)
T PRK06620 25 DQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IK--------DIFF-----------NE--- 80 (214)
T ss_pred HHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cc--------hhhh-----------ch---
Confidence 45667777766544211 3599999999999999999888776421 11 0000 00
Q ss_pred HHHhhcCcEEEEeCCCCCCc-cHHHHHHHhhcCCeEEE
Q psy4122 105 VRAAIEGRVLILEGIEKAER-NVLPVLNNLLENREMHL 141 (162)
Q Consensus 105 ~~A~~~G~vlllDEId~a~~-~v~~~L~~lle~r~l~l 141 (162)
..++...+++||||++... .....+|.+.|+|...+
T Consensus 81 -~~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g~~il 117 (214)
T PRK06620 81 -EILEKYNAFIIEDIENWQEPALLHIFNIINEKQKYLL 117 (214)
T ss_pred -hHHhcCCEEEEeccccchHHHHHHHHHHHHhcCCEEE
Confidence 1124568999999997753 45666677778776444
No 123
>PF13173 AAA_14: AAA domain
Probab=98.80 E-value=2.4e-08 Score=73.70 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=54.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC--CceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ--REVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIE 120 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg--~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId 120 (162)
++.++|.||.|||||++++++++.+. ....++++. +.....+. ..+ .. .-+.+... +..+++||||+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~-~~~~~~~~------~~~--~~-~~~~~~~~~~~~~i~iDEiq 71 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFD-DPRDRRLA------DPD--LL-EYFLELIKPGKKYIFIDEIQ 71 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccC-CHHHHHHh------hhh--hH-HHHHHhhccCCcEEEEehhh
Confidence 46789999999999999999998776 445556554 21111111 000 00 01111121 45789999999
Q ss_pred CCCccHHHHHHHhhcCC
Q psy4122 121 KAERNVLPVLNNLLENR 137 (162)
Q Consensus 121 ~a~~~v~~~L~~lle~r 137 (162)
+++ +....+..+.|++
T Consensus 72 ~~~-~~~~~lk~l~d~~ 87 (128)
T PF13173_consen 72 YLP-DWEDALKFLVDNG 87 (128)
T ss_pred hhc-cHHHHHHHHHHhc
Confidence 996 7888899999876
No 124
>PRK15115 response regulator GlrR; Provisional
Probab=98.79 E-value=2e-08 Score=87.63 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+........++++.|++|+||+++|+.+.... +.|+..++|..... .+.|.|... .-.|...-
T Consensus 140 s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~ 219 (444)
T PRK15115 140 SPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSN 219 (444)
T ss_pred CHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccC
Confidence 344444444443333345689999999999999999998764 46888888874311 223333110 00111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|-+. ..+|+.|+||||+.++++++..|..+++++.+.-
T Consensus 220 ~~g~~~--~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~ 259 (444)
T PRK15115 220 REGLFQ--AAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRP 259 (444)
T ss_pred CCCcEE--ECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEe
Confidence 122221 2367899999999999999999999999988743
No 125
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.79 E-value=3.7e-08 Score=82.45 Aligned_cols=109 Identities=9% Similarity=0.141 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-----ceEEEEeccCC--ChhhhcceeEe----ecC
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-----EVEYICLSRDT--TEADIKQRREI----VNG 95 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-----p~~~v~~~~~~--~~~dL~g~~~~----~~G 95 (162)
.+...+.|+..+..-.. .+++|+||||||||++|+.+|+.+.. ++..+++..-. ....+...+.. ..+
T Consensus 20 ~~~~~~~L~~~~~~~~~-~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (337)
T PRK12402 20 QDEVVERLSRAVDSPNL-PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTD 98 (337)
T ss_pred CHHHHHHHHHHHhCCCC-ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhh
Confidence 46677778777764322 28999999999999999999987642 23334442110 00000000000 000
Q ss_pred -eEEEeccHHHHH-----------hhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 96 -TAIYYDQSAVRA-----------AIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 96 -~~~~~~gpl~~A-----------~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
...-......+. ..+..+|+|||++.++++.+..|..++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~ 151 (337)
T PRK12402 99 KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ 151 (337)
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh
Confidence 000000001111 12346999999999999999999999884
No 126
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.79 E-value=1.2e-08 Score=96.91 Aligned_cols=102 Identities=17% Similarity=0.280 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCeEEEe
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGTAIYY 100 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~ 100 (162)
++.+..++.... ..+++|+||||||||++|+.+|... +.++..+.++......... |. |.
T Consensus 187 i~~~i~iL~r~~-~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~-------g~--~e 256 (857)
T PRK10865 187 IRRTIQVLQRRT-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR-------GE--FE 256 (857)
T ss_pred HHHHHHHHhcCC-cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchh-------hh--hH
Confidence 444444443332 2389999999999999999999876 4444444333211000010 11 11
Q ss_pred cc--HHHHH-hhc--CcEEEEeCCCCCCc--------cHHHHHHHhhcCCeEEEc
Q psy4122 101 DQ--SAVRA-AIE--GRVLILEGIEKAER--------NVLPVLNNLLENREMHLE 142 (162)
Q Consensus 101 ~g--pl~~A-~~~--G~vlllDEId~a~~--------~v~~~L~~lle~r~l~l~ 142 (162)
.. .+... .+. ..+|+||||+.+.. +..+.|.+.+++|++.+-
T Consensus 257 ~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~I 311 (857)
T PRK10865 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCV 311 (857)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEE
Confidence 10 11222 222 35899999998753 368899999999988664
No 127
>KOG0734|consensus
Probab=98.79 E-value=3.2e-08 Score=89.49 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=47.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhc-ceeEeecCeEEEeccHHHHHh--hcCcEEEEeCCCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIK-QRREIVNGTAIYYDQSAVRAA--IEGRVLILEGIEK 121 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~-g~~~~~~G~~~~~~gpl~~A~--~~G~vlllDEId~ 121 (162)
+-|||+||||||||.||+++|...|.|+.+.+.+ +.++.. | -|..+-. -|..|. +...|++|||||.
T Consensus 338 KGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGS---EFdEm~VG-----vGArRVR--dLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 338 KGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGS---EFDEMFVG-----VGARRVR--DLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred CceEEeCCCCCchhHHHHHhhcccCCCeEecccc---chhhhhhc-----ccHHHHH--HHHHHHHhcCCeEEEEechhh
Confidence 4699999999999999999999999998766554 233332 2 1111101 233444 3457999999987
Q ss_pred CCc
Q psy4122 122 AER 124 (162)
Q Consensus 122 a~~ 124 (162)
...
T Consensus 408 vG~ 410 (752)
T KOG0734|consen 408 VGG 410 (752)
T ss_pred hcc
Confidence 543
No 128
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.78 E-value=6.1e-08 Score=81.93 Aligned_cols=107 Identities=13% Similarity=0.177 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE--EEEecc-----CC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE--YICLSR-----DT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~--~v~~~~-----~~---~~~dL~g~~~~~~G~ 96 (162)
.+..++.|+..+.....++.+||+||||+|||++|+.+|+.+..+-. .-.|+. .. ...++. .+.++.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~---~~~~~~ 95 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI---EIDAAS 95 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE---Eeeccc
Confidence 46778888888876656656899999999999999999988753210 000000 00 000010 011100
Q ss_pred EEEec--cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYD--QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~--gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+ ..+..++ ....+++|||++.++.+.++.|+..+|+
T Consensus 96 ~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~ 143 (355)
T TIGR02397 96 NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE 143 (355)
T ss_pred cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC
Confidence 00000 0122211 2336999999999999999999999986
No 129
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=4.7e-08 Score=90.01 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEE----------EEeccCCC-hhhhc-c----eeE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEY----------ICLSRDTT-EADIK-Q----RRE 91 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~----------v~~~~~~~-~~dL~-g----~~~ 91 (162)
+...+.|+.++......+.+||+||+|||||++|+.+|+.++..... -.|. ... -..+. | ...
T Consensus 22 e~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg-~C~sC~~~~~g~~~n~~~ 100 (620)
T PRK14954 22 EHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG-ECESCRDFDAGTSLNISE 100 (620)
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc-cCHHHHHHhccCCCCeEE
Confidence 67778888888776666679999999999999999999988653100 0010 000 00000 0 001
Q ss_pred eecCeEEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 92 IVNGTAIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 92 ~~~G~~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+.+++..-.+. -+...+ ....++||||+++++.+.++.|+..||+
T Consensus 101 ~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe 153 (620)
T PRK14954 101 FDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE 153 (620)
T ss_pred ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 11111100000 011111 2346999999999999999999999997
No 130
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=4.8e-08 Score=89.38 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEEEEeccCCC-----hhhhcceeEeec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEYICLSRDTT-----EADIKQRREIVN 94 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~v~~~~~~~-----~~dL~g~~~~~~ 94 (162)
-+...+.|+.++.+....+.+||+||+|||||++|+.+|+.++. ||-.+..+..+. ..|++ .+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi---eida 94 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV---ELDA 94 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE---Eecc
Confidence 46778889988887666545799999999999999999988873 222111111100 01221 1111
Q ss_pred CeEEEecc--HHHH------HhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 95 GTAIYYDQ--SAVR------AAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 95 G~~~~~~g--pl~~------A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+..=.+. -+.. ......|+||||+++++.+.++.|+..||+
T Consensus 95 as~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE 144 (584)
T PRK14952 95 ASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE 144 (584)
T ss_pred ccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc
Confidence 11000000 0100 112447999999999999999999999997
No 131
>KOG0727|consensus
Probab=98.77 E-value=1.3e-08 Score=85.30 Aligned_cols=84 Identities=24% Similarity=0.299 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc--CcEEEEeCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE--GRVLILEGIE 120 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~--G~vlllDEId 120 (162)
..+-+||+||||||||.|++++|+.+...+.++..++- ....+| .|...-. -+.+-.++ ..+++|||||
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsef--vqkylg-----egprmvr--dvfrlakenapsiifideid 258 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF--VQKYLG-----EGPRMVR--DVFRLAKENAPSIIFIDEID 258 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH--HHHHhc-----cCcHHHH--HHHHHHhccCCcEEEeehhh
Confidence 34569999999999999999999999888888776532 333443 1210000 01122233 3799999997
Q ss_pred C-----------CCccHHHHHHHhhc
Q psy4122 121 K-----------AERNVLPVLNNLLE 135 (162)
Q Consensus 121 ~-----------a~~~v~~~L~~lle 135 (162)
. +..+|+..|..+|.
T Consensus 259 aiatkrfdaqtgadrevqril~elln 284 (408)
T KOG0727|consen 259 AIATKRFDAQTGADREVQRILIELLN 284 (408)
T ss_pred hHhhhhccccccccHHHHHHHHHHHH
Confidence 5 44568888888775
No 132
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=7.8e-08 Score=87.87 Aligned_cols=110 Identities=13% Similarity=0.102 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE---EEEeccCCC-hhhhc-c----eeEeecCe-
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE---YICLSRDTT-EADIK-Q----RREIVNGT- 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~---~v~~~~~~~-~~dL~-g----~~~~~~G~- 96 (162)
-+...+.|+..+.....++.+||+||+|||||++|+.+|+.++.... .-.|+ ... -..+. + ...+...+
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~-~c~~c~~i~~~~~~d~~~i~~~~~ 99 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG-TCEMCRAIAEGSAVDVIEMDAASH 99 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc-cCHHHHHHhcCCCCeEEEEecccc
Confidence 46778888887776666666799999999999999999988753110 00010 000 00000 0 00011100
Q ss_pred EEEec-cHHHHH------hhcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 97 AIYYD-QSAVRA------AIEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 97 ~~~~~-gpl~~A------~~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
....+ ..+... .....++||||+++++.+.++.|+..||+-
T Consensus 100 ~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEep 147 (585)
T PRK14950 100 TSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEP 147 (585)
T ss_pred CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcC
Confidence 00000 001111 123479999999999999999999999973
No 133
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.76 E-value=1.3e-08 Score=88.80 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=45.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh------cCcEEEEeC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI------EGRVLILEG 118 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~------~G~vlllDE 118 (162)
.-++|+||||||||.+|+++|+.+|.++..++.. +|...+.=+... -....+..|.. ...+|+|||
T Consensus 149 lgllL~GPPGcGKTllAraiA~elg~~~i~vsa~------eL~sk~vGEsEk--~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAG------ELESENAGEPGK--LIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHH------HhhcCcCCcHHH--HHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 3489999999999999999999999997666554 333210000000 00112333321 347999999
Q ss_pred CCCCCc
Q psy4122 119 IEKAER 124 (162)
Q Consensus 119 Id~a~~ 124 (162)
||..-+
T Consensus 221 IDA~~g 226 (413)
T PLN00020 221 LDAGAG 226 (413)
T ss_pred hhhcCC
Confidence 997554
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=7.1e-08 Score=88.84 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEE----EEeccCCCh---------hhhcceeEee
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEY----ICLSRDTTE---------ADIKQRREIV 93 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~----v~~~~~~~~---------~dL~g~~~~~ 93 (162)
-+...+.|+.++........+||+||+|+|||++|+.+|+.++..... -.|. .... .|++ .+.
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg-~C~~C~~i~~g~h~D~~---ei~ 96 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG-KCELCRAIAAGNALDVI---EID 96 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc-ccHHHHHHhcCCCccEE---EEe
Confidence 367788888888876666789999999999999999999988642100 0010 0000 0111 011
Q ss_pred cCeEEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 94 NGTAIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 94 ~G~~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.....-.+. -+...+ ....|+||||+++++.+.++.|+..||+
T Consensus 97 ~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe 147 (620)
T PRK14948 97 AASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE 147 (620)
T ss_pred ccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc
Confidence 110000000 011111 1236999999999999999999999996
No 135
>KOG0745|consensus
Probab=98.75 E-value=2.8e-08 Score=87.96 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=62.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH-----hhcCcEEEEeCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA-----AIEGRVLILEGI 119 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A-----~~~G~vlllDEI 119 (162)
-||||.||+|+|||-||+.+|+.++.|+...-|... |-+-.+|... ..+. .--+..| -.+-|+++|||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtL-TQAGYVGeDV----Esvi-~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTL-TQAGYVGEDV----ESVI-QKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccch-hhcccccccH----HHHH-HHHHHHccCCHHHHhcCeEEEehh
Confidence 389999999999999999999999999876666422 2222222100 0000 0011222 135689999999
Q ss_pred CCCCc--------------cHHHHHHHhhcCCeEEEcC
Q psy4122 120 EKAER--------------NVLPVLNNLLENREMHLED 143 (162)
Q Consensus 120 d~a~~--------------~v~~~L~~lle~r~l~l~~ 143 (162)
|++.. .|+..|+.++|.-.+.+|+
T Consensus 301 DKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpe 338 (564)
T KOG0745|consen 301 DKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPE 338 (564)
T ss_pred hhhcccCccccccccccchhHHHHHHHHhcccEEcccC
Confidence 99662 4899999999977777754
No 136
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.75 E-value=2.4e-08 Score=93.11 Aligned_cols=71 Identities=15% Similarity=0.196 Sum_probs=45.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc-CcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE-GRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~-G~vlllDEId~a 122 (162)
.+.+||+||||||||++|+++|...+.++..+.+. ++...+ .+.+.......+..|... ..+++|||||.+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~------~l~~~~--vGese~~i~~~f~~A~~~~p~iifiDEid~l 558 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP------EILSKW--VGESEKAIREIFRKARQAAPAIIFFDEIDAI 558 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH------HHhhcc--cCcHHHHHHHHHHHHHhcCCEEEEEEChhhh
Confidence 34699999999999999999999999998766553 333211 000000001123334333 479999999875
No 137
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=3.8e-08 Score=79.75 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=42.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKA 122 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a 122 (162)
.++|+||||||||||+.++|+.+ +..+.++.++.. +... ..+.+.+++..+|+||||+..
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~----~~~~-------------~~~~~~~~~~dlLilDDi~~~ 103 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS----QYFS-------------PAVLENLEQQDLVCLDDLQAV 103 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh----hhhh-------------HHHHhhcccCCEEEEeChhhh
Confidence 37999999999999999999764 456666655310 1100 023344566789999999986
Q ss_pred C
Q psy4122 123 E 123 (162)
Q Consensus 123 ~ 123 (162)
.
T Consensus 104 ~ 104 (229)
T PRK06893 104 I 104 (229)
T ss_pred c
Confidence 5
No 138
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.73 E-value=3.6e-08 Score=83.79 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=31.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC---------CceEEEEeccCCChhhhc
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ---------REVEYICLSRDTTEADIK 87 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg---------~p~~~v~~~~~~~~~dL~ 87 (162)
.+++++||||||||++++.+++.+. .++.+++|....+..++.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4799999999999999999987653 345566766544544443
No 139
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.73 E-value=9.5e-08 Score=86.26 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
..+.+||+||||||||++|+++|+.++.+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 34579999999999999999999998876
No 140
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=7.7e-08 Score=87.85 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+......+.+||+||+|+|||++|+.+|+.++.+ |-.+..+..+ +..|++ .+.+.+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~---eid~~s 97 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVF---EIDGAS 97 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCee---eeeccC
Confidence 367778888888766555567999999999999999999988642 1111000000 001111 011100
Q ss_pred EEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..-.+. -+...+ .+..++||||+|+++.+..+.|+..||+
T Consensus 98 ~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe 145 (576)
T PRK14965 98 NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE 145 (576)
T ss_pred ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc
Confidence 000000 111111 2346999999999999999999999996
No 141
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.72 E-value=1.1e-08 Score=89.57 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=30.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
.++.+||+||||||||++|+++|..++.++..+..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 45679999999999999999999999998776654
No 142
>PRK06526 transposase; Provisional
Probab=98.72 E-value=6.2e-09 Score=86.12 Aligned_cols=84 Identities=17% Similarity=0.187 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeE--eecCeEEEeccHHHHHhhcCcEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRRE--IVNGTAIYYDQSAVRAAIEGRVLILE 117 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~--~~~G~~~~~~gpl~~A~~~G~vlllD 117 (162)
.+++++|+||||||||+|+.+++... |+.+.++++ .+++.... ...|.. ....+.+..-.+|+||
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~------~~l~~~l~~~~~~~~~----~~~l~~l~~~dlLIID 166 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA------AQWVARLAAAHHAGRL----QAELVKLGRYPLLIVD 166 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH------HHHHHHHHHHHhcCcH----HHHHHHhccCCEEEEc
Confidence 36799999999999999999988643 565544333 33332100 011211 1233445556899999
Q ss_pred CCCCCC--ccHHHHHHHhhcC
Q psy4122 118 GIEKAE--RNVLPVLNNLLEN 136 (162)
Q Consensus 118 EId~a~--~~v~~~L~~lle~ 136 (162)
|++..+ +.....|..+++.
T Consensus 167 D~g~~~~~~~~~~~L~~li~~ 187 (254)
T PRK06526 167 EVGYIPFEPEAANLFFQLVSS 187 (254)
T ss_pred ccccCCCCHHHHHHHHHHHHH
Confidence 998765 5566778888764
No 143
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.72 E-value=4.3e-08 Score=83.85 Aligned_cols=121 Identities=15% Similarity=0.219 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHH------HhCCceEEEEec---cCCChhhhcceeEeec---Ce
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLE------LTQREVEYICLS---RDTTEADIKQRREIVN---GT 96 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~------~lg~p~~~v~~~---~~~~~~dL~g~~~~~~---G~ 96 (162)
.++++++.... .+.-|+||.||+|.|||.||+.+-+ .+.-++..++|. +|+..+.|.|. .++ |.
T Consensus 195 rmieqierva~--rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfgh--vkgaftga 270 (531)
T COG4650 195 RMIEQIERVAI--RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGH--VKGAFTGA 270 (531)
T ss_pred HHHHHHHHHHh--hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhh--hccccccc
Confidence 45555555543 3456999999999999999998764 344567777775 67677778773 221 11
Q ss_pred EEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEE-EcCCcEEecCcchHhhh
Q psy4122 97 AIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMH-LEDGRFLVSASTYDKLL 157 (162)
Q Consensus 97 ~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~-l~~g~~i~~~~~f~~~~ 157 (162)
-.-..| ++++ ..|++++||||.....+-+..|+..+|+++.. +...+.+ ..+|+.++
T Consensus 271 ~~~r~g-llrs-adggmlfldeigelgadeqamllkaieekrf~pfgsdr~v--~sdfqlia 328 (531)
T COG4650 271 RESREG-LLRS-ADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQV--SSDFQLIA 328 (531)
T ss_pred hhhhhh-hhcc-CCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCcccc--ccchHHhh
Confidence 111111 2232 47899999999999999999999999977653 2223333 56777664
No 144
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.71 E-value=9.4e-08 Score=77.75 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCCC-cEEEEcCCCchHHHHHHHHHHHhCC-ceEEEE-eccCCChhhhcce----eEee-cCeEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQ-DVFLIGKPGSLRRSLAMSYLELTQR-EVEYIC-LSRDTTEADIKQR----REIV-NGTAI 98 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~-~vlL~GppG~GKT~La~~lA~~lg~-p~~~v~-~~~~~~~~dL~g~----~~~~-~G~~~ 98 (162)
++...+.+..+......+. .++|+||+|+|||++++.++..+.. ...... ++...+..++... .... .+...
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~ 104 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDK 104 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCH
Confidence 3444455555544433333 5889999999999999999988763 222222 2334455544321 0111 11100
Q ss_pred -EeccHHH----HHhhcC--cEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 99 -YYDQSAV----RAAIEG--RVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 99 -~~~gpl~----~A~~~G--~vlllDEId~a~~~v~~~L~~lle 135 (162)
..-..+. .....| .++++||++.++++.++.|..+.+
T Consensus 105 ~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~ 148 (269)
T TIGR03015 105 AALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSN 148 (269)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhC
Confidence 0000111 111223 478999999999988888876655
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.71 E-value=2.8e-08 Score=93.88 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC----------CceEEEEeccCCChhhhcceeEeecCeEEEe
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ----------REVEYICLSRDTTEADIKQRREIVNGTAIYY 100 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg----------~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~ 100 (162)
++.+..++.... ..+++|+||||||||++|+.+|.... .++. .++ ..+++..-.. .| .|+
T Consensus 188 i~~~~~~L~r~~-~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~--~l~----~~~l~ag~~~-~g--e~e 257 (821)
T CHL00095 188 IERVIQILGRRT-KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVI--TLD----IGLLLAGTKY-RG--EFE 257 (821)
T ss_pred HHHHHHHHcccc-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE--Eee----HHHHhccCCC-cc--HHH
Confidence 334444443332 23899999999999999999998753 2333 222 2344320000 01 122
Q ss_pred cc--HHHHHhh-c-CcEEEEeCCCCCCc--------cHHHHHHHhhcCCeEEEc
Q psy4122 101 DQ--SAVRAAI-E-GRVLILEGIEKAER--------NVLPVLNNLLENREMHLE 142 (162)
Q Consensus 101 ~g--pl~~A~~-~-G~vlllDEId~a~~--------~v~~~L~~lle~r~l~l~ 142 (162)
+- .+...++ . +.+|+||||+.+-. ++.+.|.+.+.+|++.+-
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~I 311 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCI 311 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEE
Confidence 10 1222222 3 35889999975322 578899999999988764
No 146
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.70 E-value=9.7e-08 Score=87.64 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEE------eccCCC---------hhhhcceeE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYIC------LSRDTT---------EADIKQRRE 91 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~------~~~~~~---------~~dL~g~~~ 91 (162)
-+.+.+.|+..+......+.+||+||+|+|||++|+.+|+.++......+ .+.... -.|++ .
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~---e 105 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVL---E 105 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceE---E
Confidence 57888899998887766668999999999999999999998864321110 000000 00111 0
Q ss_pred eecCeEEEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 92 IVNGTAIYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 92 ~~~G~~~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+...+..=.+. -+...+ ....++||||+++++.+..+.|+..||+
T Consensus 106 ~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 106 MDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred ecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 10000000000 011111 2347999999999999999999999986
No 147
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.69 E-value=1.6e-07 Score=78.01 Aligned_cols=98 Identities=15% Similarity=0.302 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEecc--CCChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSR--DTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~--~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
-....+.++..+..... .+++|+||||||||++++.+++.+..+ ...+.++. .... +.+.. .+.
T Consensus 22 ~~~~~~~l~~~i~~~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~-~i~-------- 90 (319)
T PRK00440 22 QEEIVERLKSYVKEKNM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI-DVIRN-KIK-------- 90 (319)
T ss_pred cHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccch-HHHHH-HHH--------
Confidence 35677777777765333 379999999999999999999876432 22233321 1111 00000 000
Q ss_pred cHHHHH--h--hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVRA--A--IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~A--~--~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+... + ....+++|||++.++.+.+..|..+++.
T Consensus 91 -~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~ 128 (319)
T PRK00440 91 -EFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM 128 (319)
T ss_pred -HHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc
Confidence 00000 0 1235999999999999989999999884
No 148
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.69 E-value=9.4e-08 Score=83.04 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.....++.+........++++.|++|+||+++|+.+.... +.|+..++|..... .+.|.|... .-.|....
T Consensus 145 s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~ 224 (441)
T PRK10365 145 SPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKR 224 (441)
T ss_pred CHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcC
Confidence 444444455554434456789999999999999999998654 46788888874321 223333210 00111122
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|.+..| +||.|+||||++++++++..|..+++++.+.-
T Consensus 225 ~~g~~~~a--~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~ 264 (441)
T PRK10365 225 REGRFVEA--DGGTLFLDEIGDISPMMQVRLLRAIQEREVQR 264 (441)
T ss_pred CCCceeEC--CCCEEEEeccccCCHHHHHHHHHHHccCcEEe
Confidence 23333333 78999999999999999999999999988654
No 149
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=1.1e-07 Score=87.27 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEEEEecc---CCChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEYICLSR---DTTEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~v~~~~---~~~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+......+.+|++||+|||||++|+.+|+.+.. |+-.+..+. .....|++ .+ ++.
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Dii---eI-daa 96 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIV---EL-DAA 96 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceE---Ee-ccc
Confidence 36677888887776655667899999999999999999998752 111110000 00001111 11 110
Q ss_pred EEE-ec--cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIY-YD--QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~-~~--gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
... .+ ..+...+ ....+++|||+++++.+..+.|+..||+
T Consensus 97 s~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE 145 (605)
T PRK05896 97 SNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE 145 (605)
T ss_pred cccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh
Confidence 000 00 0111111 1346999999999999999999999995
No 150
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.69 E-value=9.8e-09 Score=88.25 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=28.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYIC 76 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~ 76 (162)
.+.++|+||||||||++|+++|+.++.++..+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 346999999999999999999999998876554
No 151
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.69 E-value=7.9e-08 Score=89.71 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=52.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc-CcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE-GRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~-G~vlllDEId~ 121 (162)
.++.++|+||||||||++++++|+.++.++..+++. ++...+.-.... . ...-+-.|... ..+|+|||||.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~------~i~~~~~g~~~~-~-l~~lf~~a~~~~p~il~iDEid~ 282 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGP------EIMSKYYGESEE-R-LREIFKEAEENAPSIIFIDEIDA 282 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecH------HHhcccccHHHH-H-HHHHHHHHHhcCCcEEEeehhhh
Confidence 456899999999999999999999999987766653 222110000000 0 00112223222 36999999987
Q ss_pred CCc-----------cHHHHHHHhhc
Q psy4122 122 AER-----------NVLPVLNNLLE 135 (162)
Q Consensus 122 a~~-----------~v~~~L~~lle 135 (162)
+.+ .+++.|..+++
T Consensus 283 l~~~r~~~~~~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 283 IAPKREEVTGEVEKRVVAQLLTLMD 307 (733)
T ss_pred hcccccCCcchHHHHHHHHHHHHhh
Confidence 643 25666777775
No 152
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.69 E-value=4e-08 Score=91.05 Aligned_cols=96 Identities=18% Similarity=0.308 Sum_probs=73.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe--ecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI--VNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~--~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
|+||+|+||+|||.|-+.+++...+-++ .-...++...|...-.- ..|.++-+-|+|+.| .+|++.|||+|+++
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vy--tsgkgss~~GLTAav~rd~~tge~~LeaGALVlA--D~Gv~cIDEfdKm~ 396 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVY--TSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLA--DGGVCCIDEFDKMN 396 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEE--EccccccccCceeEEEEccCCCeEEEeCCEEEEe--cCCEEEEEeccCCC
Confidence 7999999999999999999998866543 22334455556542111 125555566666554 88999999999999
Q ss_pred ccHHHHHHHhhcCCeEEEcCCc
Q psy4122 124 RNVLPVLNNLLENREMHLEDGR 145 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~~g~ 145 (162)
.+-..+|+..||...+.+..+.
T Consensus 397 ~~dr~aihEaMEQQtIsIaKAG 418 (682)
T COG1241 397 EEDRVAIHEAMEQQTISIAKAG 418 (682)
T ss_pred hHHHHHHHHHHHhcEeeecccc
Confidence 9999999999999999998643
No 153
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=1.2e-07 Score=84.20 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--------eEEE-Eecc---CCChhhhcceeEeec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--------VEYI-CLSR---DTTEADIKQRREIVN 94 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--------~~~v-~~~~---~~~~~dL~g~~~~~~ 94 (162)
-+...+.|+..+......+.+||+||||+|||++|+.+|+.+..+ +..+ +|.. ..+ .+++ .+.+
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~-~d~~---~i~g 97 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS-LDVL---EIDG 97 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC-CceE---Eeec
Confidence 467778888888776666678999999999999999999887542 1100 0000 000 0111 1111
Q ss_pred CeE-EEecc-HHHH------HhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 95 GTA-IYYDQ-SAVR------AAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 95 G~~-~~~~g-pl~~------A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
... .+.+- .+.+ ......++|+||+++++.+.++.|...+|+
T Consensus 98 ~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe 147 (451)
T PRK06305 98 ASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE 147 (451)
T ss_pred cccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc
Confidence 000 00000 0111 112347999999999999999999999997
No 154
>KOG1969|consensus
Probab=98.68 E-value=4.3e-08 Score=90.89 Aligned_cols=86 Identities=24% Similarity=0.295 Sum_probs=64.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe-ecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI-VNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~-~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
+-+||.||||-||||||.-+|+.-|+.+..++.+.+-++..+..+..- ..-+ .++.|=.....||+||||-++
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~------s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNH------SVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhc------cccccCCCcceEEEecccCCc
Confidence 348999999999999999999999999999999887777766532100 0000 001111344689999999999
Q ss_pred ccHHHHHHHhhcC
Q psy4122 124 RNVLPVLNNLLEN 136 (162)
Q Consensus 124 ~~v~~~L~~lle~ 136 (162)
+...++|++++..
T Consensus 401 ~~~Vdvilslv~a 413 (877)
T KOG1969|consen 401 RAAVDVILSLVKA 413 (877)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999983
No 155
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.67 E-value=7.5e-08 Score=84.37 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++...+.++.+........++++.|.+||||+++|+.+.... +.|+..++|..... .+.+.|... .-.|....
T Consensus 140 s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~ 219 (463)
T TIGR01818 140 APAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTR 219 (463)
T ss_pred CHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccC
Confidence 566666666665544456789999999999999999998764 45788888864311 233444210 00111111
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|.+. ..+|+.|+||||+.++++++..|..+++++.+.-
T Consensus 220 ~~g~~~--~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~ 259 (463)
T TIGR01818 220 RQGRFE--QADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYR 259 (463)
T ss_pred CCCcEE--ECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEE
Confidence 112111 2368899999999999999999999999887654
No 156
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.67 E-value=6e-08 Score=82.31 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=56.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGI 119 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEI 119 (162)
.+++++|+||+|||||+|+.++|..+ |.++.++.+..- ..+|... ..+++ + .-..+.+++-.+|+||||
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l--~~~lk~~--~~~~~--~--~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEF--IRELKNS--ISDGS--V--KEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHH--HHHHHHH--HhcCc--H--HHHHHHhcCCCEEEEecC
Confidence 35689999999999999999999766 677776666421 2233221 11222 1 245677888899999999
Q ss_pred CCC--CccHH-HHHHHhhcCC
Q psy4122 120 EKA--ERNVL-PVLNNLLENR 137 (162)
Q Consensus 120 d~a--~~~v~-~~L~~lle~r 137 (162)
..- .+.+. +.|..+++.|
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R 247 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYR 247 (306)
T ss_pred CCccccHHHHHHHHHHHHHHH
Confidence 654 33344 3455566544
No 157
>KOG0478|consensus
Probab=98.67 E-value=2.7e-08 Score=91.61 Aligned_cols=95 Identities=14% Similarity=0.253 Sum_probs=71.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe--ecCeEEEeccHHHHHhhcCcEEEEeCCCCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI--VNGTAIYYDQSAVRAAIEGRVLILEGIEKA 122 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~--~~G~~~~~~gpl~~A~~~G~vlllDEId~a 122 (162)
-|+||+|+||+|||.|.+.++++.-+-.+ .+. ...+..-|...... ..+.++-+-|+|+. ..||++-|||+||+
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSG-kGsSavGLTayVtrd~dtkqlVLesGALVL--SD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVY-TSG-KGSSAVGLTAYVTKDPDTRQLVLESGALVL--SDNGICCIDEFDKM 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCccee-ecC-CccchhcceeeEEecCccceeeeecCcEEE--cCCceEEchhhhhh
Confidence 48999999999999999999999876543 333 23344444432222 23456666666544 48899999999999
Q ss_pred CccHHHHHHHhhcCCeEEEcC
Q psy4122 123 ERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 123 ~~~v~~~L~~lle~r~l~l~~ 143 (162)
+.+..++|+++||..++.|+.
T Consensus 539 ~dStrSvLhEvMEQQTvSIAK 559 (804)
T KOG0478|consen 539 SDSTRSVLHEVMEQQTLSIAK 559 (804)
T ss_pred hHHHHHHHHHHHHHhhhhHhh
Confidence 999999999999999887764
No 158
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.66 E-value=1.7e-07 Score=85.37 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+.....++.+||+||+|||||++|+.+|+.++.+ |-.+..+... ...|++ .+...+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~---eidaas 97 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVI---EIDAAS 97 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeE---Eeeccc
Confidence 467788888888876667668899999999999999999987632 2111100000 011111 111100
Q ss_pred EEEec--cHHHHH------hhcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 97 AIYYD--QSAVRA------AIEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 97 ~~~~~--gpl~~A------~~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
..-.+ ..+... .....|++|||++++..+..+.|+..||+-
T Consensus 98 ~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep 146 (559)
T PRK05563 98 NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP 146 (559)
T ss_pred cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC
Confidence 00000 001111 123469999999999999999999999963
No 159
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.66 E-value=2e-08 Score=84.23 Aligned_cols=85 Identities=14% Similarity=0.240 Sum_probs=54.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~ 121 (162)
+.++||++||||||||++|+++|...+.|+.-+. +.+|+|.+. -+|....+ ....+|-+ ...+++|||+|.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vk------at~liGehV-Gdgar~Ih-ely~rA~~~aPcivFiDE~DA 221 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVK------ATELIGEHV-GDGARRIH-ELYERARKAAPCIVFIDELDA 221 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEec------hHHHHHHHh-hhHHHHHH-HHHHHHHhcCCeEEEehhhhh
Confidence 3469999999999999999999999999987554 346776321 12221111 12233332 347899999987
Q ss_pred CC---------ccHHHHHHHhhc
Q psy4122 122 AE---------RNVLPVLNNLLE 135 (162)
Q Consensus 122 a~---------~~v~~~L~~lle 135 (162)
+. -||.++.|.+|-
T Consensus 222 iaLdRryQelRGDVsEiVNALLT 244 (368)
T COG1223 222 IALDRRYQELRGDVSEIVNALLT 244 (368)
T ss_pred hhhhhhHHHhcccHHHHHHHHHH
Confidence 43 355555555543
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.66 E-value=6.3e-08 Score=91.89 Aligned_cols=102 Identities=12% Similarity=0.238 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCeEEEe
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGTAIYY 100 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~ 100 (162)
++.+..++... ...+++|+||||||||++++.+|..+ +.++..+.+ ..++..... .|. |.
T Consensus 182 i~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~a~~~~-~g~--~e 251 (852)
T TIGR03346 182 IRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALIAGAKY-RGE--FE 251 (852)
T ss_pred HHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHhhcchh-hhh--HH
Confidence 33344443332 23489999999999999999999875 333333322 222210000 011 11
Q ss_pred cc--HHHHHh-h--cCcEEEEeCCCCCCc--------cHHHHHHHhhcCCeEEEc
Q psy4122 101 DQ--SAVRAA-I--EGRVLILEGIEKAER--------NVLPVLNNLLENREMHLE 142 (162)
Q Consensus 101 ~g--pl~~A~-~--~G~vlllDEId~a~~--------~v~~~L~~lle~r~l~l~ 142 (162)
.. .+.+.+ + .+.+|+||||+.+.. ++.+.|.+.++++++.+-
T Consensus 252 ~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~I 306 (852)
T TIGR03346 252 ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCI 306 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEE
Confidence 10 112222 2 245899999997642 477889999999888664
No 161
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.66 E-value=1.1e-07 Score=90.37 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=52.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCC---c-----eEEEEeccCCChhhhcceeEeecCeEEEecc--HHHHHh-hc--Cc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQR---E-----VEYICLSRDTTEADIKQRREIVNGTAIYYDQ--SAVRAA-IE--GR 112 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~---p-----~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g--pl~~A~-~~--G~ 112 (162)
+++|+||||||||++|+.+|..+.. | ...+.++ .+.+...... .| .|... .+...+ ++ +.
T Consensus 210 n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~----l~~l~ag~~~-~g--e~e~~lk~ii~e~~~~~~~~ 282 (852)
T TIGR03345 210 NPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD----LGLLQAGASV-KG--EFENRLKSVIDEVKASPQPI 282 (852)
T ss_pred ceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee----hhhhhccccc-ch--HHHHHHHHHHHHHHhcCCCe
Confidence 8999999999999999999987632 1 1111111 1112100000 01 11110 122222 22 35
Q ss_pred EEEEeCCCCCCc--------cHHHHHHHhhcCCeEEEc
Q psy4122 113 VLILEGIEKAER--------NVLPVLNNLLENREMHLE 142 (162)
Q Consensus 113 vlllDEId~a~~--------~v~~~L~~lle~r~l~l~ 142 (162)
||+||||+.+.. ++.+.|.+.+++|++.+-
T Consensus 283 ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~I 320 (852)
T TIGR03345 283 ILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTI 320 (852)
T ss_pred EEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEE
Confidence 889999998753 455579999999998774
No 162
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.65 E-value=2.1e-07 Score=79.82 Aligned_cols=95 Identities=12% Similarity=0.177 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce----------EEEEeccC--CChhhhcceeEeec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV----------EYICLSRD--TTEADIKQRREIVN 94 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~----------~~v~~~~~--~~~~dL~g~~~~~~ 94 (162)
-....+.++..++.....++++|+||||+|||++|+.+|+.++.+. ..+.++.. ...+++.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~------- 94 (367)
T PRK14970 22 QSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR------- 94 (367)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH-------
Confidence 3566777777777655556799999999999999999999876421 11111110 0011111
Q ss_pred CeEEEeccHHHHH------hhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 95 GTAIYYDQSAVRA------AIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 95 G~~~~~~gpl~~A------~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+.+. .....++++||++.+.+..++.|+..+++
T Consensus 95 --------~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~ 134 (367)
T PRK14970 95 --------NLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE 134 (367)
T ss_pred --------HHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC
Confidence 11111 12346999999999999888999888886
No 163
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.64 E-value=1.6e-07 Score=85.67 Aligned_cols=106 Identities=14% Similarity=0.197 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCC---ChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDT---TEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~---~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+......+.+||+||+|+|||++|+.+|+.++.+ +-.+..+..+ ..-|++ .+ +|.
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~---~i-dga 96 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVI---EI-DGA 96 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeE---Ee-cCc
Confidence 467788888888876666668999999999999999999988642 2111000000 000111 01 111
Q ss_pred E-EEecc--HHHH------HhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 A-IYYDQ--SAVR------AAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~-~~~~g--pl~~------A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
. .-.+. -+.. ......+++|||+++++.+.++.|+..+|+
T Consensus 97 s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe 145 (563)
T PRK06647 97 SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE 145 (563)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc
Confidence 0 00000 0000 112346999999999999999999999996
No 164
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.64 E-value=8.6e-08 Score=79.50 Aligned_cols=95 Identities=18% Similarity=0.244 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCCCc-EEEEcCCCchHHHHHHHHHHHhCCce----------------------EEEEeccCCChhh
Q psy4122 29 DWLSHLRWILQKDNMSQD-VFLIGKPGSLRRSLAMSYLELTQREV----------------------EYICLSRDTTEAD 85 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~-vlL~GppG~GKT~La~~lA~~lg~p~----------------------~~v~~~~~~~~~d 85 (162)
.....+......+....| +||.||||+|||++|..+|+.+.... ..+.+++ +|
T Consensus 8 ~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~----s~ 83 (325)
T COG0470 8 EAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP----SD 83 (325)
T ss_pred hHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc----cc
Confidence 344444444443333346 99999999999999999998776221 1222221 11
Q ss_pred hcceeEeecCeEEEeccHHHHHh----------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 86 IKQRREIVNGTAIYYDQSAVRAA----------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 86 L~g~~~~~~G~~~~~~gpl~~A~----------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..+. + .-. ..++.+ ....+++|||+|.++++.+++|+..+|.
T Consensus 84 ~~~~------~-i~~--~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe 135 (325)
T COG0470 84 LRKI------D-IIV--EQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE 135 (325)
T ss_pred cCCC------c-chH--HHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc
Confidence 1100 0 000 011111 1126899999999999999999999995
No 165
>PRK08727 hypothetical protein; Validated
Probab=98.64 E-value=2e-07 Score=75.82 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHH
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVR 106 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~ 106 (162)
.+..++.+.... ...+++|+||+|||||||+.+++.. .|....++.+.. +... +. ...+
T Consensus 28 ~~~~~~~~~~~~-~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~------~~~~---------~~--~~~~ 89 (233)
T PRK08727 28 LLAQLQALAAGQ-SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA------AAGR---------LR--DALE 89 (233)
T ss_pred HHHHHHHHHhcc-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH------hhhh---------HH--HHHH
Confidence 445555444322 2347999999999999999998754 355555555432 1110 00 1234
Q ss_pred HhhcCcEEEEeCCCCCCc--cHHHHHHHhhc
Q psy4122 107 AAIEGRVLILEGIEKAER--NVLPVLNNLLE 135 (162)
Q Consensus 107 A~~~G~vlllDEId~a~~--~v~~~L~~lle 135 (162)
.+..-.+|+|||++.... .....|..+++
T Consensus 90 ~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n 120 (233)
T PRK08727 90 ALEGRSLVALDGLESIAGQREDEVALFDFHN 120 (233)
T ss_pred HHhcCCEEEEeCcccccCChHHHHHHHHHHH
Confidence 555668999999998753 33444555554
No 166
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.63 E-value=1.2e-07 Score=87.16 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=31.4
Q ss_pred cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 110 EGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 110 ~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
+||+|+|||++.++++++..|..+|+++++.+.+
T Consensus 217 ngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g 250 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITG 250 (608)
T ss_pred CCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecC
Confidence 5799999999999999999999999999988754
No 167
>PRK06921 hypothetical protein; Provisional
Probab=98.63 E-value=1e-07 Score=79.23 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEeccCCChhhhcceeEeecCeEEEe-ccHHHHHhhcCcEEEEeC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICLSRDTTEADIKQRREIVNGTAIYY-DQSAVRAAIEGRVLILEG 118 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~-~gpl~~A~~~G~vlllDE 118 (162)
+.+++|+|+||+|||+|+.++|..+ |..+.++... +++.. +... |. .....+.+.+-.+|+|||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~------~l~~~--l~~~---~~~~~~~~~~~~~~dlLiIDD 185 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFV------EGFGD--LKDD---FDLLEAKLNRMKKVEVLFIDD 185 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHH------HHHHH--HHHH---HHHHHHHHHHhcCCCEEEEec
Confidence 5689999999999999999999754 5555555542 22211 0000 00 012345667789999999
Q ss_pred CCC-------CCccHHHHHHHhhcCC
Q psy4122 119 IEK-------AERNVLPVLNNLLENR 137 (162)
Q Consensus 119 Id~-------a~~~v~~~L~~lle~r 137 (162)
+.. +.+...+.|..+++.|
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R 211 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYR 211 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHH
Confidence 944 3333456666766643
No 168
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.62 E-value=8.4e-08 Score=88.60 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=31.1
Q ss_pred cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 110 EGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 110 ~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
+||+|+|||++.+++.++..|..+|+++++.+.+
T Consensus 226 nGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g 259 (637)
T PRK13765 226 HKGVLFIDEINTLDLESQQSLLTAMQEKKFPITG 259 (637)
T ss_pred CCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecc
Confidence 5799999999999999999999999999987744
No 169
>KOG1808|consensus
Probab=98.62 E-value=3.2e-08 Score=98.89 Aligned_cols=106 Identities=26% Similarity=0.323 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVR 106 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~ 106 (162)
+|.+...++..+.++...+++++.|+||+|||+++..++...|....+++....++..|+.|...-.+|.. |+|+|+..
T Consensus 1029 a~t~~~nl~~~l~~~~l~~p~~leg~sg~gktsl~~~l~~~~G~~~~r~nl~~qtdl~dl~g~~~pve~~~-~~d~ell~ 1107 (1856)
T KOG1808|consen 1029 APTTSENLRRVLRALGLPKPILLEGESGSGKTSLVLALGRLTGKWTIRLNLSDQTDLADLFGSDVPVEGEE-WEDSELLA 1107 (1856)
T ss_pred ChHHHHHHHHHHHhccCCccccccCCCCCCccchhhhhhhhcccceeccccccccccchhcCccCCCCCcc-ccccHHHh
Confidence 68999999999999999999999999999999999999999999999888888888999998543222322 99999999
Q ss_pred HhhcCcEEEEeCCCCCCccHHHHHHHhhcCCe-EEEc
Q psy4122 107 AAIEGRVLILEGIEKAERNVLPVLNNLLENRE-MHLE 142 (162)
Q Consensus 107 A~~~G~vlllDEId~a~~~v~~~L~~lle~r~-l~l~ 142 (162)
|+++| .|+.++...||..+|+|. ..++
T Consensus 1108 a~~~~---------l~sqsv~Eglna~~D~R~e~~i~ 1135 (1856)
T KOG1808|consen 1108 ADKNG---------LASQSVLEGLNACLDHRNEVFIA 1135 (1856)
T ss_pred hhhcc---------ccchhhhhchhHhhhhhhhhhhh
Confidence 99999 789999999999999765 4553
No 170
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=3.2e-07 Score=83.25 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-------ce---------------EEEEeccC--CC
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-------EV---------------EYICLSRD--TT 82 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~---------------~~v~~~~~--~~ 82 (162)
-+...+.|+..+......+..||+||+|+|||++|+.+|+.+.. |+ ..+.+++. ..
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~g 98 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRG 98 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccC
Confidence 46777888888877666655689999999999999999988742 11 11111110 00
Q ss_pred hhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 83 EADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 83 ~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..++... +.. ..+ .| .+....+++|||+++++++.+++|+..||+
T Consensus 99 Id~IRel--ie~--~~~--~P---~~~~~KVvIIDEad~Lt~~A~NALLK~LEE 143 (535)
T PRK08451 99 IDDIREL--IEQ--TKY--KP---SMARFKIFIIDEVHMLTKEAFNALLKTLEE 143 (535)
T ss_pred HHHHHHH--HHH--Hhh--Cc---ccCCeEEEEEECcccCCHHHHHHHHHHHhh
Confidence 1111100 000 000 01 112346999999999999999999999996
No 171
>PRK05642 DNA replication initiation factor; Validated
Probab=98.62 E-value=2.6e-07 Score=75.18 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcC--CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 28 QDWLSHLRWILQKDN--MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~--~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
....+.++.+..... ...+++|+||+|||||||+.++++.. +..+.+++. +++... ..
T Consensus 27 ~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~------~~~~~~-----------~~ 89 (234)
T PRK05642 27 AAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL------AELLDR-----------GP 89 (234)
T ss_pred HHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH------HHHHhh-----------hH
Confidence 445555555443211 12479999999999999999998643 455555544 233311 12
Q ss_pred HHHHHhhcCcEEEEeCCCCCCc--cHHHHHHHhh
Q psy4122 103 SAVRAAIEGRVLILEGIEKAER--NVLPVLNNLL 134 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a~~--~v~~~L~~ll 134 (162)
.+.+.+++..+|+||+++.... +....|..++
T Consensus 90 ~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~ 123 (234)
T PRK05642 90 ELLDNLEQYELVCLDDLDVIAGKADWEEALFHLF 123 (234)
T ss_pred HHHHhhhhCCEEEEechhhhcCChHHHHHHHHHH
Confidence 3556677778999999987642 3334444444
No 172
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=3.4e-07 Score=82.22 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEEE-Eec--cCCChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEYI-CLS--RDTTEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~v-~~~--~~~~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+......+.+||+||+|+|||++|+.+|+.++. ||..+ +|. ...+..|+. .+...+
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~---eidaas 97 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI---EIDAAS 97 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE---EEeCcc
Confidence 46777888888877655545688999999999999999998863 22111 110 000111221 111100
Q ss_pred EEEec--cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 97 AIYYD--QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 97 ~~~~~--gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
..=.+ ..+...+ ..-.+++|||++.++.+..+.|+..+++-
T Consensus 98 ~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep 146 (486)
T PRK14953 98 NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP 146 (486)
T ss_pred CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC
Confidence 00000 0111111 12369999999999999999999999863
No 173
>PRK09183 transposase/IS protein; Provisional
Probab=98.60 E-value=6e-08 Score=80.28 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhccee--EeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIKQRR--EIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~g~~--~~~~G~~~~~~ 101 (162)
+...+..|..+.- ...+.+++|+||||||||+|+..++.. .|..+.++.+. ++.... ....+. +.
T Consensus 86 ~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~------~l~~~l~~a~~~~~--~~- 155 (259)
T PRK09183 86 PQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA------DLLLQLSTAQRQGR--YK- 155 (259)
T ss_pred CHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH------HHHHHHHHHHHCCc--HH-
Confidence 3444455543211 335789999999999999999999754 46666655432 333110 001111 00
Q ss_pred cHHHHHhhcCcEEEEeCCCCCCc--cHHHHHHHhhcC
Q psy4122 102 QSAVRAAIEGRVLILEGIEKAER--NVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~A~~~G~vlllDEId~a~~--~v~~~L~~lle~ 136 (162)
..+.+.+..-.+++|||+...+. +..+.|.++++.
T Consensus 156 ~~~~~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~ 192 (259)
T PRK09183 156 TTLQRGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAK 192 (259)
T ss_pred HHHHHHhcCCCEEEEcccccCCCChHHHHHHHHHHHH
Confidence 01222244557999999987444 455567777753
No 174
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.60 E-value=2.2e-07 Score=79.85 Aligned_cols=91 Identities=19% Similarity=0.143 Sum_probs=53.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhccee--Eeec---CeEEEeccH----HHHHhhc
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRR--EIVN---GTAIYYDQS----AVRAAIE 110 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~--~~~~---G~~~~~~gp----l~~A~~~ 110 (162)
.+++++||||+|||++++.+++.+ +..+.+++|....+..++.... .+.+ ....+.... +.+.+.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE 135 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh
Confidence 479999999999999999999766 4556777777665544433210 0100 011111011 2223322
Q ss_pred -C--cEEEEeCCCCCC----ccHHHHHHHhhc
Q psy4122 111 -G--RVLILEGIEKAE----RNVLPVLNNLLE 135 (162)
Q Consensus 111 -G--~vlllDEId~a~----~~v~~~L~~lle 135 (162)
+ .+|+|||+|.+. .+.+..|...++
T Consensus 136 ~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~ 167 (394)
T PRK00411 136 RDRVLIVALDDINYLFEKEGNDVLYSLLRAHE 167 (394)
T ss_pred cCCEEEEEECCHhHhhccCCchHHHHHHHhhh
Confidence 2 478899999875 445555555444
No 175
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.60 E-value=5.3e-08 Score=91.43 Aligned_cols=98 Identities=9% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec-cCCChhhhcceeEeecCeEEEeccHHHHHhh--cCcEEEEe
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS-RDTTEADIKQRREIVNGTAIYYDQSAVRAAI--EGRVLILE 117 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~-~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~--~G~vlllD 117 (162)
..|++|+||||||||++|+.+|... +.|.....+. -..+...++... .--|.+...-..+...++ .+++|+||
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT-KYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhccc-chhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 3489999999999999999999754 2232211111 011233333100 001111111112222222 24699999
Q ss_pred CCCCC---------CccHHHHHHHhhcCCeEEEc
Q psy4122 118 GIEKA---------ERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 118 EId~a---------~~~v~~~L~~lle~r~l~l~ 142 (162)
||+.+ ..++.+.|.+++.++++.+.
T Consensus 286 EIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vI 319 (758)
T PRK11034 286 EIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVI 319 (758)
T ss_pred cHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEE
Confidence 99864 23466779999999988664
No 176
>KOG0480|consensus
Probab=98.60 E-value=7.1e-08 Score=88.34 Aligned_cols=94 Identities=11% Similarity=0.248 Sum_probs=74.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee--EeecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR--EIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~--~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
|||++|+||+|||.+.++.++...+.+ +.+..-++.+-|...- ....|++..+-|+|.. ..+|++-|||+|++.
T Consensus 380 nv~iVGDPgt~KSQfLk~v~~fsPR~v--YtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmL--ADnGICCIDEFDKMd 455 (764)
T KOG0480|consen 380 NVCIVGDPGTGKSQFLKAVCAFSPRSV--YTSGKASSAAGLTAAVVKDEESGDFTIEAGALML--ADNGICCIDEFDKMD 455 (764)
T ss_pred eEEEeCCCCccHHHHHHHHhccCCcce--EecCcccccccceEEEEecCCCCceeeecCcEEE--ccCceEEechhcccC
Confidence 799999999999999999999887653 3344455566665421 1245888888887644 488999999999999
Q ss_pred ccHHHHHHHhhcCCeEEEcC
Q psy4122 124 RNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~~ 143 (162)
-.-+.+|++.||...+.|..
T Consensus 456 ~~dqvAihEAMEQQtISIaK 475 (764)
T KOG0480|consen 456 VKDQVAIHEAMEQQTISIAK 475 (764)
T ss_pred hHhHHHHHHHHHhheehhee
Confidence 98899999999999887764
No 177
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.58 E-value=5.6e-08 Score=86.24 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
.++.++|+||||||||++|+++|..++.++..+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 44579999999999999999999999988766543
No 178
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.58 E-value=1.6e-07 Score=94.30 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=32.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
..+-+||+||||||||.||+++|...+.|+..+.++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs 1664 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLN 1664 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHH
Confidence 345699999999999999999999999999888776
No 179
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=4.5e-08 Score=87.17 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=48.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~a 122 (162)
.+.+||+||||||||.||+++|...+.++..+... +|+..+. +-+..-....+.+|- ....++++||||.+
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~------~l~sk~v--Gesek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS------ELLSKWV--GESEKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH------HHhcccc--chHHHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 34699999999999999999999999998776664 3432111 000001112344554 34689999999875
Q ss_pred Cc
Q psy4122 123 ER 124 (162)
Q Consensus 123 ~~ 124 (162)
-+
T Consensus 348 ~~ 349 (494)
T COG0464 348 AS 349 (494)
T ss_pred hc
Confidence 43
No 180
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.56 E-value=9.3e-08 Score=87.20 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh--CCceEEEEeccC---CChhhhcceeEeecCe--E
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT--QREVEYICLSRD---TTEADIKQRREIVNGT--A 97 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l--g~p~~~v~~~~~---~~~~dL~g~~~~~~G~--~ 97 (162)
-..++....++++.+.....-|++|.|.||+||-.+++++.... .-|+..++|..- .-.++|+|. ..|. .
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy---~~GafTg 393 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGY---VAGAFTG 393 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhcc---Ccccccc
Confidence 45788888888888877777899999999999999999998554 457888999732 234556552 2222 1
Q ss_pred EEeccHHHH-HhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcCCcE
Q psy4122 98 IYYDQSAVR-AAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLEDGRF 146 (162)
Q Consensus 98 ~~~~gpl~~-A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~g~~ 146 (162)
.+..|+.-+ -...|+.++||||.-+|-+.++.|+.+|++|+++=-+|++
T Consensus 394 a~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~ 443 (606)
T COG3284 394 ARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR 443 (606)
T ss_pred chhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc
Confidence 222232100 0136799999999999999999999999999987666654
No 181
>KOG0738|consensus
Probab=98.56 E-value=6.7e-08 Score=84.59 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=52.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH------hhcCcEEEEeCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA------AIEGRVLILEGI 119 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A------~~~G~vlllDEI 119 (162)
.|||+||||||||.||+++|...|. .+++++..+-.+...|. + .-+++- .....+||||||
T Consensus 247 gvLm~GPPGTGKTlLAKAvATEc~t--TFFNVSsstltSKwRGe------S-----EKlvRlLFemARfyAPStIFiDEI 313 (491)
T KOG0738|consen 247 GVLMVGPPGTGKTLLAKAVATECGT--TFFNVSSSTLTSKWRGE------S-----EKLVRLLFEMARFYAPSTIFIDEI 313 (491)
T ss_pred eeeeeCCCCCcHHHHHHHHHHhhcC--eEEEechhhhhhhhccc------h-----HHHHHHHHHHHHHhCCceeehhhH
Confidence 5999999999999999999999984 46777655445555441 0 122222 234689999999
Q ss_pred CCC------------CccHHHHHHHhhc
Q psy4122 120 EKA------------ERNVLPVLNNLLE 135 (162)
Q Consensus 120 d~a------------~~~v~~~L~~lle 135 (162)
|.+ +..+-+-|+-.+|
T Consensus 314 Dslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 314 DSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 753 3345566666666
No 182
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.54 E-value=2.4e-07 Score=81.93 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEec
Q psy4122 28 QDWLSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
......++.+...-. ...+++|+||||||||||++++|..+ +..+.++++..- ..++... +.++..
T Consensus 131 ~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~--~~~~~~---- 202 (450)
T PRK00149 131 RLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNA--LRNNTM---- 202 (450)
T ss_pred HHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHH--HHcCcH----
Confidence 335555555554321 22479999999999999999999776 333445554321 2222221 111111
Q ss_pred cHHHHHhhcCcEEEEeCCCCCCc------cHHHHHHHhhcCC-eEEE
Q psy4122 102 QSAVRAAIEGRVLILEGIEKAER------NVLPVLNNLLENR-EMHL 141 (162)
Q Consensus 102 gpl~~A~~~G~vlllDEId~a~~------~v~~~L~~lle~r-~l~l 141 (162)
..+.+.++.-.+|+||||+.... +....++.+.+++ .+.+
T Consensus 203 ~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iii 249 (450)
T PRK00149 203 EEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL 249 (450)
T ss_pred HHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEE
Confidence 13445566778999999988644 2344455566554 3444
No 183
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.6e-07 Score=84.08 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEE---Eec-----cCCChhhhcceeEeecCeEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYI---CLS-----RDTTEADIKQRREIVNGTAI 98 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v---~~~-----~~~~~~dL~g~~~~~~G~~~ 98 (162)
-+...+.|+..+......+.+||+||+|||||++|+.+|+.+..+-... .|. .+.. .|++ .+ ++...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~-~Dvi---ei-daasn 97 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS-LDII---EM-DAASN 97 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC-CcEE---EE-ecccc
Confidence 3667788888887665555679999999999999999998886431100 010 0000 0111 01 11000
Q ss_pred E-ec--cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 99 Y-YD--QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 99 ~-~~--gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
. .+ ..+...+ ....|++|||++.+..+.+++|+..||+
T Consensus 98 ~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE 144 (725)
T PRK07133 98 NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE 144 (725)
T ss_pred CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc
Confidence 0 00 0111222 1236999999999999999999999996
No 184
>KOG0737|consensus
Probab=98.54 E-value=6.8e-08 Score=83.63 Aligned_cols=65 Identities=17% Similarity=0.292 Sum_probs=47.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh------hcCcEEEEe
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA------IEGRVLILE 117 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~------~~G~vlllD 117 (162)
.+.+||.||||||||.+|+++|...|..+.-+.++.-|+ +..| +...+++|+ .++.+++||
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~--KWfg-----------E~eKlv~AvFslAsKl~P~iIFID 193 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS--KWFG-----------EAQKLVKAVFSLASKLQPSIIFID 193 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch--hhHH-----------HHHHHHHHHHhhhhhcCcceeehh
Confidence 356999999999999999999999999987776654433 2222 111344543 467899999
Q ss_pred CCCC
Q psy4122 118 GIEK 121 (162)
Q Consensus 118 EId~ 121 (162)
|||-
T Consensus 194 Evds 197 (386)
T KOG0737|consen 194 EVDS 197 (386)
T ss_pred hHHH
Confidence 9974
No 185
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.52 E-value=5.2e-07 Score=70.34 Aligned_cols=96 Identities=15% Similarity=0.220 Sum_probs=52.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe---ccCC-----Chhhh-ccee-Ee---------ecCeEEEe-c-
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICL---SRDT-----TEADI-KQRR-EI---------VNGTAIYY-D- 101 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~---~~~~-----~~~dL-~g~~-~~---------~~G~~~~~-~- 101 (162)
+++|+|+||+||||+++.+.+.+ |.++.=+.+ ..+- +..++ -|.. .+ .-|...+. +
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~e~ 80 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDLES 80 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-HHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcHHH
Confidence 58999999999999999999888 666432211 1110 01112 1100 01 11322222 1
Q ss_pred ------cHHHHHhhcCcEEEEeCCCC---CCccHHHHHHHhhcCCeEEE
Q psy4122 102 ------QSAVRAAIEGRVLILEGIEK---AERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 102 ------gpl~~A~~~G~vlllDEId~---a~~~v~~~L~~lle~r~l~l 141 (162)
..+..|+.+..++++|||-+ ..+.....+..+|+.+.-.|
T Consensus 81 fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~~vi 129 (168)
T PF03266_consen 81 FEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLDSNKPVI 129 (168)
T ss_dssp HHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHcCCCcEE
Confidence 12334456678999999955 66778999999999654433
No 186
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.51 E-value=1.1e-07 Score=81.41 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGI 119 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEI 119 (162)
.+.+++|+||||+|||+|+.++|..+ |+.+.+++...- ...|... .. +...... .....+.+-.+|+||++
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l--~~~l~~~-~~-~~~~~~~--~~~~~l~~~DLLIIDDl 255 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADEL--IEILREI-RF-NNDKELE--EVYDLLINCDLLIIDDL 255 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHH--HHHHHHH-Hh-ccchhHH--HHHHHhccCCEEEEecc
Confidence 34799999999999999999999765 555555544211 1112110 00 1110000 11466777899999999
Q ss_pred CC--CCccHHHHHHHhhcCC
Q psy4122 120 EK--AERNVLPVLNNLLENR 137 (162)
Q Consensus 120 d~--a~~~v~~~L~~lle~r 137 (162)
.. ..+...+.|..+++.|
T Consensus 256 G~e~~t~~~~~~Lf~iin~R 275 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKR 275 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 54 4555667777777744
No 187
>KOG0733|consensus
Probab=98.51 E-value=1.2e-07 Score=86.84 Aligned_cols=71 Identities=17% Similarity=0.076 Sum_probs=45.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCCCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEKAER 124 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~a~~ 124 (162)
-|||+||||||||-||+++|...|..+..+-..+. ...++| -+..-+..-+.+|= ....|+|+||||.+-|
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL--lNkYVG------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p 618 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL--LNKYVG------ESERAVRQVFQRARASAPCVIFFDEIDALVP 618 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhccCceEeecCHHH--HHHHhh------hHHHHHHHHHHHhhcCCCeEEEecchhhcCc
Confidence 49999999999999999999999998765544321 122222 11111112233332 2347999999988655
No 188
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.51 E-value=1.7e-07 Score=81.53 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 30 WLSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 30 ~~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
....++.+...-. ...+++|+||+|+|||+|++++++.+ +..+.++++..- ..++... +..+. -..
T Consensus 121 a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~--~~~~~~~--~~~~~----~~~ 192 (405)
T TIGR00362 121 AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKF--TNDFVNA--LRNNK----MEE 192 (405)
T ss_pred HHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHH--HHHHHHH--HHcCC----HHH
Confidence 3444444444311 12378999999999999999999765 344555554311 1122211 11111 113
Q ss_pred HHHHhhcCcEEEEeCCCCCCc
Q psy4122 104 AVRAAIEGRVLILEGIEKAER 124 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~ 124 (162)
+.+.++...+|+||||+....
T Consensus 193 ~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 193 FKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHHHhCCEEEEehhhhhcC
Confidence 445566678999999998654
No 189
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=9e-07 Score=81.52 Aligned_cols=107 Identities=9% Similarity=0.158 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--------eEEEE-ec--cCCChhhhcceeEeecC
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--------VEYIC-LS--RDTTEADIKQRREIVNG 95 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--------~~~v~-~~--~~~~~~dL~g~~~~~~G 95 (162)
-+...+.|+..+......+.+||+||+|+|||++|+.+|+.++.. |-.+. |. .+...-++. .+.+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~---~ld~~ 98 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH---ELDAA 98 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE---Eeccc
Confidence 467777888888776666568999999999999999999987521 10000 00 000000010 01111
Q ss_pred eEEEecc--HHHHH------hhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 96 TAIYYDQ--SAVRA------AIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 96 ~~~~~~g--pl~~A------~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+..-.+- -+... .....++||||+++++.+.++.|+..||+
T Consensus 99 ~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe 147 (614)
T PRK14971 99 SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE 147 (614)
T ss_pred ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC
Confidence 0000000 01100 11236999999999999999999999996
No 190
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.9e-07 Score=81.18 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=60.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCc-----eEEEEeccCCChhhhcceeE--e-ecCeEEEeccHH----HHHhhc--
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQRE-----VEYICLSRDTTEADIKQRRE--I-VNGTAIYYDQSA----VRAAIE-- 110 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p-----~~~v~~~~~~~~~dL~g~~~--~-~~G~~~~~~gpl----~~A~~~-- 110 (162)
.|++++|+||||||..++.+++.+..+ +.+++|...-+.-.+..... + .-..+.|..... .+.+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 379999999999999999999887655 78899987777666553111 1 111222322222 233322
Q ss_pred C-cEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 111 G-RVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 111 G-~vlllDEId~a~~~v~~~L~~lle 135 (162)
+ -+++|||+|.+-..-.+.|+.++.
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r 148 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLR 148 (366)
T ss_pred CeEEEEEcchhhhccccchHHHHHHh
Confidence 2 467899999977775577777765
No 191
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.49 E-value=5.9e-07 Score=83.04 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~a 122 (162)
.+.++|+||||||||++++.+|...+.|+..+++..-. +...+ .+..... ..+..|.. ...+++|||||.+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~--~~~~g-----~~~~~~~-~~f~~a~~~~P~IifIDEiD~l 256 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV--EMFVG-----VGASRVR-DMFEQAKKAAPCIIFIDEIDAV 256 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH--Hhhhc-----ccHHHHH-HHHHHHHhcCCcEEEehhHhhh
Confidence 45699999999999999999999999998766654210 01111 0100000 01222322 3469999999887
Q ss_pred C
Q psy4122 123 E 123 (162)
Q Consensus 123 ~ 123 (162)
.
T Consensus 257 ~ 257 (644)
T PRK10733 257 G 257 (644)
T ss_pred h
Confidence 3
No 192
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.49 E-value=4.7e-07 Score=80.18 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH----hCCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL----TQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~----lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
...+..|..++.-...+.|+++.||+|||||+++..++.. .| .-++.++|+.. +.. .
T Consensus 193 r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---------~f~T~a~Lf~~--L~~--------~ 253 (449)
T TIGR02688 193 RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---------GTITVAKLFYN--IST--------R 253 (449)
T ss_pred HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------CcCcHHHHHHH--HHH--------H
Confidence 3445556565555556789999999999999999987744 23 35667778742 101 2
Q ss_pred HHHHhhcCcEEEEeCCCCCC----ccHHHHHHHhhcCCeEEE
Q psy4122 104 AVRAAIEGRVLILEGIEKAE----RNVLPVLNNLLENREMHL 141 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~----~~v~~~L~~lle~r~l~l 141 (162)
....+..-.+|+|||+.-.+ .+..+.|...|+++...-
T Consensus 254 ~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsR 295 (449)
T TIGR02688 254 QIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTR 295 (449)
T ss_pred HHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceec
Confidence 23344556899999997633 347788999999888765
No 193
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.48 E-value=3.4e-07 Score=82.81 Aligned_cols=61 Identities=13% Similarity=0.032 Sum_probs=45.6
Q ss_pred eeeecccCCCCCCHHHHHHHHHHHHhcCCCC----cEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy4122 15 LIYLFSVNTDALTQDWLSHLRWILQKDNMSQ----DVFLIGKPGSLRRSLAMSYLELTQREVEYI 75 (162)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~L~~i~~~~~~g~----~vlL~GppG~GKT~La~~lA~~lg~p~~~v 75 (162)
+|.+.+..+....+..++.++..++....+. -++|.||||||||+.++.+|+.+|..+...
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 4444445555567778888887776654333 478899999999999999999999877654
No 194
>KOG0731|consensus
Probab=98.48 E-value=7.2e-08 Score=90.05 Aligned_cols=73 Identities=18% Similarity=0.152 Sum_probs=46.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~a 122 (162)
.+-+||+||||||||-||+++|..-|.|+..++.++ .-+.. .++...=+..-+..|=. ...++++||||..
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSE---FvE~~-----~g~~asrvr~lf~~ar~~aP~iifideida~ 415 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSE---FVEMF-----VGVGASRVRDLFPLARKNAPSIIFIDEIDAV 415 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHH---HHHHh-----cccchHHHHHHHHHhhccCCeEEEecccccc
Confidence 345999999999999999999999999987665542 22222 11110001111222222 2478999999875
Q ss_pred Cc
Q psy4122 123 ER 124 (162)
Q Consensus 123 ~~ 124 (162)
..
T Consensus 416 ~~ 417 (774)
T KOG0731|consen 416 GR 417 (774)
T ss_pred cc
Confidence 43
No 195
>KOG0991|consensus
Probab=98.47 E-value=6.6e-07 Score=74.29 Aligned_cols=99 Identities=14% Similarity=0.249 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH-hCCceE----EEEeccCCChhhhccee-EeecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL-TQREVE----YICLSRDTTEADIKQRR-EIVNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~-lg~p~~----~v~~~~~~~~~dL~g~~-~~~~G~~~~~ 100 (162)
+..+.+.|.-|....... |+++.||||||||+-+..+|+. +|.... .++.+.+-...-...+. .+...+.
T Consensus 32 Ne~tv~rl~via~~gnmP-~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv--- 107 (333)
T KOG0991|consen 32 NEDTVERLSVIAKEGNMP-NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKV--- 107 (333)
T ss_pred CHHHHHHHHHHHHcCCCC-ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhc---
Confidence 689999999999877665 8999999999999999999965 564321 22222211111110000 0000000
Q ss_pred ccHHHHHhhcC--cEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 101 DQSAVRAAIEG--RVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 101 ~gpl~~A~~~G--~vlllDEId~a~~~v~~~L~~lle 135 (162)
.+..| .+++|||.|.+....+.+|.+.+|
T Consensus 108 ------~lp~grhKIiILDEADSMT~gAQQAlRRtME 138 (333)
T KOG0991|consen 108 ------TLPPGRHKIIILDEADSMTAGAQQALRRTME 138 (333)
T ss_pred ------cCCCCceeEEEeeccchhhhHHHHHHHHHHH
Confidence 01122 589999999999999999999988
No 196
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=4.5e-07 Score=80.37 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEeccHH
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl 104 (162)
.....+.+...-....|++|+||||||||||+.++|+.+ +..+.++++..- ..++... +..+.. ..+
T Consensus 116 a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~~~--~~~~~~----~~f 187 (440)
T PRK14088 116 AYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDS--MKEGKL----NEF 187 (440)
T ss_pred HHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHH--HhcccH----HHH
Confidence 334444444321112379999999999999999999764 233445544311 1222211 111111 123
Q ss_pred HHHhh-cCcEEEEeCCCCCCc------cHHHHHHHhhcCC
Q psy4122 105 VRAAI-EGRVLILEGIEKAER------NVLPVLNNLLENR 137 (162)
Q Consensus 105 ~~A~~-~G~vlllDEId~a~~------~v~~~L~~lle~r 137 (162)
.+.++ ...+|+|||++.... +....++.+.+.+
T Consensus 188 ~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~ 227 (440)
T PRK14088 188 REKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG 227 (440)
T ss_pred HHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC
Confidence 33444 468999999987532 2344455555554
No 197
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.46 E-value=2.1e-07 Score=67.00 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=52.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCcc-
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERN- 125 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~- 125 (162)
|+|+||||||||++++.+|..+..... ......+. ....+.-.| ..+..-.++++||+.....+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~------~~~~~~vy---~~~~~~~~w------~gY~~q~vvi~DD~~~~~~~~ 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIG------EPTKDSVY---TRNPGDKFW------DGYQGQPVVIIDDFGQDNDGY 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhc------cCCCCcEE---eCCCccchh------hccCCCcEEEEeecCcccccc
Confidence 589999999999999999977754320 00011111 111122222 23455579999999887765
Q ss_pred ---HHHHHHHhhcCCeEEEc
Q psy4122 126 ---VLPVLNNLLENREMHLE 142 (162)
Q Consensus 126 ---v~~~L~~lle~r~l~l~ 142 (162)
....|.++++.-.+..+
T Consensus 66 ~~~~~~~l~~l~s~~~~~~~ 85 (107)
T PF00910_consen 66 NYSDESELIRLISSNPFQPN 85 (107)
T ss_pred chHHHHHHHHHHhcCCcccc
Confidence 67788888888777654
No 198
>KOG0735|consensus
Probab=98.45 E-value=5.6e-07 Score=83.64 Aligned_cols=101 Identities=13% Similarity=0.086 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHh------------cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecC
Q psy4122 28 QDWLSHLRWILQK------------DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNG 95 (162)
Q Consensus 28 ~~~~~~L~~i~~~------------~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G 95 (162)
.+....|+.+++. +.....+||+||||||||.||.++|...+..+..+-..+- .+..+|.- +.+
T Consensus 673 ~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPEl--L~KyIGaS--Eq~ 748 (952)
T KOG0735|consen 673 FEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPEL--LSKYIGAS--EQN 748 (952)
T ss_pred HHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHH--HHHHhccc--HHH
Confidence 4555666666541 2233469999999999999999999887765443333211 34444421 001
Q ss_pred eEEEeccHHHHH-hhcCcEEEEeCCCCCCcc-----------HHHHHHHhhcC
Q psy4122 96 TAIYYDQSAVRA-AIEGRVLILEGIEKAERN-----------VLPVLNNLLEN 136 (162)
Q Consensus 96 ~~~~~~gpl~~A-~~~G~vlllDEId~a~~~-----------v~~~L~~lle~ 136 (162)
+.--+.+| +....+|++||+|...|. |.+-|+.-||.
T Consensus 749 ----vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 749 ----VRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG 797 (952)
T ss_pred ----HHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc
Confidence 11123344 345689999999986662 56666666664
No 199
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=1.6e-06 Score=74.03 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce--EEEEec--------cCCChhhhcceeEeecCeE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV--EYICLS--------RDTTEADIKQRREIVNGTA 97 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~--~~v~~~--------~~~~~~dL~g~~~~~~G~~ 97 (162)
+...+.|+.++......+..||+||+|+||+++|+.+|+.+..+- ....|. ..-+-.|+.- ...+|..
T Consensus 12 ~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~--i~~~~~~ 89 (329)
T PRK08058 12 PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL--VAPDGQS 89 (329)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE--ecccccc
Confidence 456778888887666665679999999999999999998764221 000000 0000011110 0011211
Q ss_pred EEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 98 IYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 98 ~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.=.+. .+.+.+ ....|++|||+++++.+.+++|+..||+
T Consensus 90 i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE 136 (329)
T PRK08058 90 IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE 136 (329)
T ss_pred CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC
Confidence 10110 011111 1236999999999999999999999996
No 200
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.44 E-value=2.4e-06 Score=65.91 Aligned_cols=107 Identities=16% Similarity=0.236 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEE-EEec--------cCCChhhhcceeEeec-Ce-
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEY-ICLS--------RDTTEADIKQRREIVN-GT- 96 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~-v~~~--------~~~~~~dL~g~~~~~~-G~- 96 (162)
+...+.|..+++.....+.+||+||+|+||+++|..+|+.+--.-.. ..|. ..-...|+. .+.. +.
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~---~~~~~~~~ 79 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFI---IIKPDKKK 79 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEE---EEETTTSS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceE---EEeccccc
Confidence 45678888888887777778999999999999999999766322110 0000 000011111 0111 00
Q ss_pred -EEEecc--HHHHH-----hh-cCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 97 -AIYYDQ--SAVRA-----AI-EGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 97 -~~~~~g--pl~~A-----~~-~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
..-.+. .+... .. .-.+++|||+++++.+.+++|+..||+-
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep 129 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP 129 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC
Confidence 000000 01111 11 2369999999999999999999999964
No 201
>KOG0742|consensus
Probab=98.44 E-value=3.3e-07 Score=81.02 Aligned_cols=101 Identities=12% Similarity=0.153 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHhcCC-------CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeec--Ce
Q psy4122 26 LTQDWLSHLRWILQKDNM-------SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVN--GT 96 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~-------g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~--G~ 96 (162)
+.|+....++++..+-.. -+|++++||||||||..|+.+|...|...-.++.. |.-+ +|+..... --
T Consensus 359 L~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGG-DVAP---lG~qaVTkiH~l 434 (630)
T KOG0742|consen 359 LHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGG-DVAP---LGAQAVTKIHKL 434 (630)
T ss_pred cCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCC-Cccc---cchHHHHHHHHH
Confidence 579999999999865332 23799999999999999999999999875433322 2111 11100000 01
Q ss_pred EEEeccHHHHHhhcCcEEEEeCCCC---------CCccHHHHHHHhhc
Q psy4122 97 AIYYDQSAVRAAIEGRVLILEGIEK---------AERNVLPVLNNLLE 135 (162)
Q Consensus 97 ~~~~~gpl~~A~~~G~vlllDEId~---------a~~~v~~~L~~lle 135 (162)
|.|- +-.+.|-+|+|||.|. ++.+.-+.||.+|=
T Consensus 435 FDWa-----kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf 477 (630)
T KOG0742|consen 435 FDWA-----KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 477 (630)
T ss_pred HHHH-----hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH
Confidence 2221 2235677899999975 56677888888774
No 202
>KOG0730|consensus
Probab=98.44 E-value=1.5e-07 Score=86.39 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~ 121 (162)
..+-|||+||||||||++|+++|...+.++..+.+.+- .+...| -+.....--+-+|= ....|+++||||.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL--~sk~vG------eSEr~ir~iF~kAR~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPEL--FSKYVG------ESERAIREVFRKARQVAPCIIFFDEIDA 538 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHH--HHHhcC------chHHHHHHHHHHHhhcCCeEEehhhHHh
Confidence 34569999999999999999999999999876655322 111222 00000000122221 1237999999986
Q ss_pred CCc-----------cHHHHHHHhhc
Q psy4122 122 AER-----------NVLPVLNNLLE 135 (162)
Q Consensus 122 a~~-----------~v~~~L~~lle 135 (162)
... .|++.|+.-||
T Consensus 539 i~~~R~g~~~~v~~RVlsqLLtEmD 563 (693)
T KOG0730|consen 539 LAGSRGGSSSGVTDRVLSQLLTEMD 563 (693)
T ss_pred HhhccCCCccchHHHHHHHHHHHcc
Confidence 432 36677777666
No 203
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.43 E-value=2e-06 Score=71.19 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC-CceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ-REVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA 108 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg-~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~ 108 (162)
.+++.+..+..... .|+||+|+.|||||++++++..... ..+..+++..+ +|..- ..+...+
T Consensus 39 l~~Nt~~Fl~G~pa-nnvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~----~L~~l------------~~l~~~l 101 (249)
T PF05673_consen 39 LIENTEQFLQGLPA-NNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE----DLGDL------------PELLDLL 101 (249)
T ss_pred HHHHHHHHHcCCCC-cceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH----HhccH------------HHHHHHH
Confidence 33444444444333 3899999999999999999887653 34666766522 33210 0233333
Q ss_pred h---cCcEEEEeCCCC-CCccHHHHHHHhhcCCeEEEcCCcEEecCcchHhh
Q psy4122 109 I---EGRVLILEGIEK-AERNVLPVLNNLLENREMHLEDGRFLVSASTYDKL 156 (162)
Q Consensus 109 ~---~G~vlllDEId~-a~~~v~~~L~~lle~r~l~l~~g~~i~~~~~f~~~ 156 (162)
+ ..-||++|++.- ....--..|.++||.+--.-|+.-.+.++.|-+-+
T Consensus 102 ~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 102 RDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred hcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 3 345899999843 44456788999999876666777777777776544
No 204
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=1e-06 Score=76.14 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEEEEeccCCChhhhc--c-ee---Ee--
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEYICLSRDTTEADIK--Q-RR---EI-- 92 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~v~~~~~~~~~dL~--g-~~---~~-- 92 (162)
....+.|...+.+....+.+||+||+|+|||++|+.+|+.+.. |....+.+.....-.++ | .+ .+
T Consensus 29 ~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~ 108 (351)
T PRK09112 29 EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITR 108 (351)
T ss_pred HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeec
Confidence 5566777777766555546999999999999999999987744 11100010111111111 0 00 01
Q ss_pred ----ecCe---EEEecc--HHHHHh----hcC--cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 93 ----VNGT---AIYYDQ--SAVRAA----IEG--RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 93 ----~~G~---~~~~~g--pl~~A~----~~G--~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
++|. .+-++. .+.+-+ ..| .|++|||+++++++.++.|+..||+
T Consensus 109 ~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE 167 (351)
T PRK09112 109 PFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE 167 (351)
T ss_pred ccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc
Confidence 1111 000110 011111 123 5899999999999999999999996
No 205
>KOG0477|consensus
Probab=98.40 E-value=2.6e-07 Score=84.78 Aligned_cols=93 Identities=12% Similarity=0.200 Sum_probs=65.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEee---cCeEEEeccHHHHHhhcCcEEEEeCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIV---NGTAIYYDQSAVRAAIEGRVLILEGIEKA 122 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~---~G~~~~~~gpl~~A~~~G~vlllDEId~a 122 (162)
||||.|+||||||.+.++.++...+.+. ......+..-|... ..+ .+....+-|+|+. ..+||++|||+|++
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~--tTGqGASavGLTa~-v~KdPvtrEWTLEaGALVL--ADkGvClIDEFDKM 558 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVF--TTGQGASAVGLTAY-VRKDPVTREWTLEAGALVL--ADKGVCLIDEFDKM 558 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeE--eccCCccccceeEE-EeeCCccceeeeccCeEEE--ccCceEEeehhhhh
Confidence 6999999999999999999988877643 33334344344321 111 1233334444444 47899999999999
Q ss_pred CccHHHHHHHhhcCCeEEEcC
Q psy4122 123 ERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 123 ~~~v~~~L~~lle~r~l~l~~ 143 (162)
+..=-..++..||...+.|..
T Consensus 559 ndqDRtSIHEAMEQQSISISK 579 (854)
T KOG0477|consen 559 NDQDRTSIHEAMEQQSISISK 579 (854)
T ss_pred cccccchHHHHHHhcchhhhh
Confidence 998888899999988776643
No 206
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.40 E-value=1.3e-06 Score=76.28 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=70.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEec---cCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLS---RDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLIL 116 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~---~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlll 116 (162)
...|+|+.|.+||||--+|++...+ .+.|+.-++|. ++.-.++|.|+..=.+|+. |-+- ..+||.++|
T Consensus 226 lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~----GffE--~AngGTVlL 299 (511)
T COG3283 226 LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKK----GFFE--QANGGTVLL 299 (511)
T ss_pred cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCcc----chhh--hccCCeEEe
Confidence 3469999999999999999977644 36788888886 3444677888533333432 2222 348999999
Q ss_pred eCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 117 EGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 117 DEId~a~~~v~~~L~~lle~r~l~l 141 (162)
|||-.++|..+..|+.+|.+|...-
T Consensus 300 DeIgEmSp~lQaKLLRFL~DGtFRR 324 (511)
T COG3283 300 DEIGEMSPRLQAKLLRFLNDGTFRR 324 (511)
T ss_pred ehhhhcCHHHHHHHHHHhcCCceee
Confidence 9999999999999999999887754
No 207
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.40 E-value=1.3e-06 Score=83.27 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=51.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHh-------CCc---eEEEEeccCCChhhhcce--eEeec--CeEEEeccHHHH----Hh
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT-------QRE---VEYICLSRDTTEADIKQR--REIVN--GTAIYYDQSAVR----AA 108 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l-------g~p---~~~v~~~~~~~~~dL~g~--~~~~~--G~~~~~~gpl~~----A~ 108 (162)
+++.|+||||||..++.+.+.+ +.+ +.+++|....++..+... ..+.+ ....|.-.-+.. .+
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 4699999999999999997655 223 356777544444433210 00100 111111011111 11
Q ss_pred h---c-CcEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 109 I---E-GRVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 109 ~---~-G~vlllDEId~a~~~v~~~L~~lle 135 (162)
. . -.+|+|||||.+....+.+|+.+++
T Consensus 864 ~k~~r~v~IIILDEID~L~kK~QDVLYnLFR 894 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITKTQKVLFTLFD 894 (1164)
T ss_pred hcccccceEEEeehHhhhCccHHHHHHHHHH
Confidence 1 1 1378999999998888888888776
No 208
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=1.6e-06 Score=70.39 Aligned_cols=73 Identities=25% Similarity=0.296 Sum_probs=45.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
+.+++|+||+|||||||++.+++..+.. ++... ++. + .++.++.. ++|+||+++..+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~------~~~-------------~-~~~~~~~~-~~l~iDDi~~~~ 100 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPN------EIG-------------S-DAANAAAE-GPVLIEDIDAGG 100 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHH------Hcc-------------h-HHHHhhhc-CeEEEECCCCCC
Confidence 3359999999999999999988765432 23221 111 0 12223333 689999998865
Q ss_pred cc---HHHHHHHhhcCCeE
Q psy4122 124 RN---VLPVLNNLLENREM 139 (162)
Q Consensus 124 ~~---v~~~L~~lle~r~l 139 (162)
.+ ....+|.+.+++..
T Consensus 101 ~~~~~lf~l~n~~~~~g~~ 119 (226)
T PRK09087 101 FDETGLFHLINSVRQAGTS 119 (226)
T ss_pred CCHHHHHHHHHHHHhCCCe
Confidence 32 45555566665543
No 209
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.36 E-value=5.1e-07 Score=80.23 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=45.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEK 121 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~ 121 (162)
.|++|+||+|+|||||+++++..+ +..+.+++...- ..++... +..+.. ..+...++.-.+|+||||+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f--~~~~~~~--l~~~~~----~~f~~~~~~~dvLiIDDiq~ 213 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF--TEHLVSA--IRSGEM----QRFRQFYRNVDALFIEDIEV 213 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH--HHHHHHH--HhcchH----HHHHHHcccCCEEEEcchhh
Confidence 479999999999999999999765 555555554211 1122211 111210 12333355678999999998
Q ss_pred CCc
Q psy4122 122 AER 124 (162)
Q Consensus 122 a~~ 124 (162)
...
T Consensus 214 l~~ 216 (445)
T PRK12422 214 FSG 216 (445)
T ss_pred hcC
Confidence 754
No 210
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=2.8e-06 Score=72.78 Aligned_cols=103 Identities=19% Similarity=0.121 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEE-Eec---cCCChhhhcceeEeecCeEEEec
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYI-CLS---RDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v-~~~---~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
..+.++......+.+||.||+|+||+++|+.+|+.+... +-.+ +|. ....+ |+.--.....++.+=+|
T Consensus 11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HP-D~~~i~~~~~~~~i~id 89 (328)
T PRK05707 11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHP-DNFVLEPEEADKTIKVD 89 (328)
T ss_pred HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCC-CEEEEeccCCCCCCCHH
Confidence 344555554455568999999999999999999887531 1100 000 00001 11100000001100000
Q ss_pred c--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 Q--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
. .+.+.+ ....|++|||+++++.+..++|+..||+
T Consensus 90 ~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE 132 (328)
T PRK05707 90 QVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE 132 (328)
T ss_pred HHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC
Confidence 0 011111 1236899999999999999999999997
No 211
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.36 E-value=1.3e-06 Score=80.41 Aligned_cols=104 Identities=16% Similarity=0.219 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCC-CcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 30 WLSHLRWILQKDNMS-QDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g-~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
.....+.++...... -+++|+|++|||||||+.++|+.+ +..+.++++..- ..++... +.++.. .-
T Consensus 299 A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef--~~el~~a--l~~~~~----~~ 370 (617)
T PRK14086 299 AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF--TNEFINS--IRDGKG----DS 370 (617)
T ss_pred HHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHHHHH--HHhccH----HH
Confidence 334445555443222 259999999999999999999765 344555555321 1223211 112211 12
Q ss_pred HHHHhhcCcEEEEeCCCCCCcc------HHHHHHHhhcC-CeEEE
Q psy4122 104 AVRAAIEGRVLILEGIEKAERN------VLPVLNNLLEN-REMHL 141 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~------v~~~L~~lle~-r~l~l 141 (162)
+.+.++.-.+|+||||+....+ +...++.+.++ +.+.+
T Consensus 371 f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III 415 (617)
T PRK14086 371 FRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL 415 (617)
T ss_pred HHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 4445667789999999887442 44555566554 34544
No 212
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.35 E-value=2e-06 Score=69.53 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCC-CCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKDNM-SQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~-g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~ 100 (162)
+....+..+.+...-.. ..+++|+||+|+|||||.+++++.. +..+.+++...- ..++.. .+.++..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f--~~~~~~--~~~~~~~--- 88 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF--IREFAD--ALRDGEI--- 88 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH--HHHHHH--HHHTTSH---
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH--HHHHHH--HHHcccc---
Confidence 56667777777765322 2379999999999999999998754 233444443211 111110 0111111
Q ss_pred ccHHHHHhhcCcEEEEeCCCCCCccH--HHHHHHhhc
Q psy4122 101 DQSAVRAAIEGRVLILEGIEKAERNV--LPVLNNLLE 135 (162)
Q Consensus 101 ~gpl~~A~~~G~vlllDEId~a~~~v--~~~L~~lle 135 (162)
..+...++.-.+|+||+|+...... +..|..+++
T Consensus 89 -~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n 124 (219)
T PF00308_consen 89 -EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFN 124 (219)
T ss_dssp -HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHH
T ss_pred -hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHH
Confidence 1345566777999999999976643 555555554
No 213
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=6.5e-06 Score=69.39 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce------EEEEecc----CCChhhhcceeEeecCeE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV------EYICLSR----DTTEADIKQRREIVNGTA 97 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~------~~v~~~~----~~~~~dL~g~~~~~~G~~ 97 (162)
+...+.|+..+......+..+++||+|+|||++|+.+|+.+.... ....+.. .....++.. +. ...
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~---~~-~~~ 85 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN---II-EEV 85 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH---HH-HHH
Confidence 566777888887666666679999999999999999998763210 0111110 011111110 00 000
Q ss_pred EEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 98 IYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 98 ~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
...|+ .....|++|||+++++.+..++|+..||+
T Consensus 86 --~~~p~---~~~~kv~iI~~ad~m~~~a~naLLK~LEe 119 (313)
T PRK05564 86 --NKKPY---EGDKKVIIIYNSEKMTEQAQNAFLKTIEE 119 (313)
T ss_pred --hcCcc---cCCceEEEEechhhcCHHHHHHHHHHhcC
Confidence 00010 01336999999999999999999999996
No 214
>KOG0739|consensus
Probab=98.31 E-value=8.4e-07 Score=75.89 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=43.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc--CcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE--GRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~--G~vlllDEId~a~ 123 (162)
-+||+||||+|||.||+++|...+.- +++++ .+||+..+.=+.-+ .+. .|....|+ ..+++|||||.+.
T Consensus 168 giLLyGPPGTGKSYLAKAVATEAnST--FFSvS----SSDLvSKWmGESEk--LVk-nLFemARe~kPSIIFiDEiDslc 238 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEANST--FFSVS----SSDLVSKWMGESEK--LVK-NLFEMARENKPSIIFIDEIDSLC 238 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhcCCc--eEEee----hHHHHHHHhccHHH--HHH-HHHHHHHhcCCcEEEeehhhhhc
Confidence 38999999999999999999988844 55554 44555211000000 000 12222343 4799999998654
No 215
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.31 E-value=7.7e-07 Score=64.00 Aligned_cols=26 Identities=31% Similarity=0.384 Sum_probs=24.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+++.|+|||||||+|+.+|+.+|.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 68999999999999999999998763
No 216
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=3.9e-06 Score=72.87 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
+...+.|...+......+.+||+||+|+||+++|..+|+.+
T Consensus 25 ~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 25 AAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 56667787777766666569999999999999999999876
No 217
>KOG0651|consensus
Probab=98.27 E-value=2.5e-06 Score=73.06 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~a 122 (162)
.+-++|+||||+|||-+|+++|+.+|..+..+..++- .++.+|. .+. ....-+..|-. ...++++||||..
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~l--v~kyiGE----saR--lIRemf~yA~~~~pciifmdeiDAi 237 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSAL--VDKYIGE----SAR--LIRDMFRYAREVIPCIIFMDEIDAI 237 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhh--hhhhccc----HHH--HHHHHHHHHhhhCceEEeehhhhhh
Confidence 3458999999999999999999999998776655422 2233331 000 00001112221 2478999999863
Q ss_pred -----------CccHHHHHHHhhc
Q psy4122 123 -----------ERNVLPVLNNLLE 135 (162)
Q Consensus 123 -----------~~~v~~~L~~lle 135 (162)
+..++.-|..+++
T Consensus 238 gGRr~se~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 238 GGRRFSEGTSSDREIQRTLMELLN 261 (388)
T ss_pred ccEEeccccchhHHHHHHHHHHHH
Confidence 3457777777776
No 218
>PHA00729 NTP-binding motif containing protein
Probab=98.25 E-value=3.1e-06 Score=69.26 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=22.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+++|+|+|||||||+|..+|..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999876
No 219
>KOG0726|consensus
Probab=98.25 E-value=7e-07 Score=76.21 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=46.7
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccH-HHHH----h--hcCcE
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS-AVRA----A--IEGRV 113 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp-l~~A----~--~~G~v 113 (162)
+...+-|+|+|+||+|||-||+++|..+..-+.++.. ++|++.+. -+|| +++- . -...+
T Consensus 216 ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvG------seLiQkyl--------GdGpklvRqlF~vA~e~apSI 281 (440)
T KOG0726|consen 216 IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVG------SELIQKYL--------GDGPKLVRELFRVAEEHAPSI 281 (440)
T ss_pred CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhh------HHHHHHHh--------ccchHHHHHHHHHHHhcCCce
Confidence 3344569999999999999999999988777665544 35554221 1233 2222 2 23479
Q ss_pred EEEeCCCCCC
Q psy4122 114 LILEGIEKAE 123 (162)
Q Consensus 114 lllDEId~a~ 123 (162)
+||||||...
T Consensus 282 vFiDEIdAiG 291 (440)
T KOG0726|consen 282 VFIDEIDAIG 291 (440)
T ss_pred EEeehhhhhc
Confidence 9999998754
No 220
>KOG0741|consensus
Probab=98.25 E-value=8.7e-07 Score=80.28 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=50.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcC-cEEEEeCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEG-RVLILEGIEK 121 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G-~vlllDEId~ 121 (162)
.+||.||||+|||+||-.+|...+.|+..+. +++|++|. .+..+..+....+-.|++.. .++++|+|.+
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKii-----Spe~miG~--sEsaKc~~i~k~F~DAYkS~lsiivvDdiEr 609 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKII-----SPEDMIGL--SESAKCAHIKKIFEDAYKSPLSIIVVDDIER 609 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEe-----ChHHccCc--cHHHHHHHHHHHHHHhhcCcceEEEEcchhh
Confidence 6999999999999999999999999987552 46677762 11222223334455666665 7899999976
No 221
>PRK04296 thymidine kinase; Provisional
Probab=98.23 E-value=6.1e-06 Score=65.11 Aligned_cols=94 Identities=9% Similarity=0.014 Sum_probs=49.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChh--hhcceeEeecCeEEEec-cHHHHHhh--cC--cE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEA--DIKQRREIVNGTAIYYD-QSAVRAAI--EG--RV 113 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~--dL~g~~~~~~G~~~~~~-gpl~~A~~--~G--~v 113 (162)
|.-.+++||+|+|||+++..++... |..+..+.-.-+.... .+..+-.+.-....|.. ..+...++ ++ .+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dv 81 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDC 81 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCE
Confidence 4457899999999999999888654 5554444221122211 11111001001111211 12223332 22 58
Q ss_pred EEEeCCCCCCcc-HHHHHHHhhcCC
Q psy4122 114 LILEGIEKAERN-VLPVLNNLLENR 137 (162)
Q Consensus 114 lllDEId~a~~~-v~~~L~~lle~r 137 (162)
|+|||+..++.+ +.+.+..+-+.+
T Consensus 82 viIDEaq~l~~~~v~~l~~~l~~~g 106 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVLDDLG 106 (190)
T ss_pred EEEEccccCCHHHHHHHHHHHHHcC
Confidence 999999999777 555554445555
No 222
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=2.4e-06 Score=79.03 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHHhcCCC----CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 26 LTQDWLSHLRWILQKDNMS----QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g----~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..+..++.++.++.....+ +-++|+||||||||++++.+|..++..+.
T Consensus 88 ~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 88 VHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred CcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 3567777788777765432 23999999999999999999999887653
No 223
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=98.22 E-value=3.2e-06 Score=67.16 Aligned_cols=95 Identities=16% Similarity=0.065 Sum_probs=53.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcc-eeEeecCeEEEeccHHHHHhh--cCcEEEEeCCCCCC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQ-RREIVNGTAIYYDQSAVRAAI--EGRVLILEGIEKAE 123 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g-~~~~~~G~~~~~~gpl~~A~~--~G~vlllDEId~a~ 123 (162)
+++.|+||||||++++.++... . .....++. ...+.. .....+....+.+..+..... .+..+++||+-.++
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~--~~~~~~~~--~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~~~~ 75 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-L--VVTVISPT--IELYTEWLPDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQLLP 75 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-c--cccccccc--ceeccccccccCCccccEEeEhhhcccccCcCCEEEEeccccCC
Confidence 4678999999999999998774 1 10000000 000000 000111122223332222222 37899999999999
Q ss_pred ccHHHHHHHhhcCCeEEEc-CCcE
Q psy4122 124 RNVLPVLNNLLENREMHLE-DGRF 146 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~-~g~~ 146 (162)
+..+..|......+.+.+- |-.+
T Consensus 76 ~g~l~~l~~~~~~~~~~l~GDp~Q 99 (234)
T PF01443_consen 76 PGYLLLLLSLSPAKNVILFGDPLQ 99 (234)
T ss_pred hHHHHHHHhhccCcceEEEECchh
Confidence 9888887777776666553 4333
No 224
>KOG0736|consensus
Probab=98.21 E-value=1.6e-06 Score=81.21 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=44.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCCCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEKAER 124 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~a~~ 124 (162)
-+||+||||||||-+|+++|......+..+... +|+-.| .+-+..=....+.+|= ....|+++||+|...|
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL~FlSVKGP------ELLNMY--VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP 778 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSLNFLSVKGP------ELLNMY--VGQSEENVREVFERARSAAPCVIFFDELDSLAP 778 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhceeeEEeecCH------HHHHHH--hcchHHHHHHHHHHhhccCCeEEEeccccccCc
Confidence 599999999999999999998887765544432 233110 1111000111233442 2457999999988666
No 225
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.21 E-value=2.1e-06 Score=76.35 Aligned_cols=106 Identities=12% Similarity=0.187 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 30 WLSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 30 ~~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
.....+.+..... ...|++|+|++|||||||+.++++.+ +..+.++++..- ..++... +..+.... ..
T Consensus 126 A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f--~~~~~~~--l~~~~~~~--~~ 199 (450)
T PRK14087 126 AFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF--ARKAVDI--LQKTHKEI--EQ 199 (450)
T ss_pred HHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHH--HHHhhhHH--HH
Confidence 4455555544221 12479999999999999999999754 233334433210 1112110 11110000 02
Q ss_pred HHHHhhcCcEEEEeCCCCCC--ccHHHH----HHHhhcCC-eEEE
Q psy4122 104 AVRAAIEGRVLILEGIEKAE--RNVLPV----LNNLLENR-EMHL 141 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~--~~v~~~----L~~lle~r-~l~l 141 (162)
+.+.++.-.+|+||||+... +..++. ++.+.+++ .+.+
T Consensus 200 ~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIl 244 (450)
T PRK14087 200 FKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFF 244 (450)
T ss_pred HHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 33345667899999998876 334444 44444544 3544
No 226
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8e-07 Score=81.38 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=50.7
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeec-CeEEEeccHHHHHhhcC-cEEEEeCC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVN-GTAIYYDQSAVRAAIEG-RVLILEGI 119 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~-G~~~~~~gpl~~A~~~G-~vlllDEI 119 (162)
...+-++|+||||||||.||+++|...+.|+..++.+ |.+-. ..+ |..+ ..-.+.+|-++. .+++||||
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS------~FVem--fVGvGAsR-VRdLF~qAkk~aP~IIFIDEi 251 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGS------DFVEM--FVGVGASR-VRDLFEQAKKNAPCIIFIDEI 251 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCceeccch------hhhhh--hcCCCcHH-HHHHHHHhhccCCCeEEEehh
Confidence 3456799999999999999999999999998766554 22210 111 1111 112456665544 59999999
Q ss_pred CCCCcc
Q psy4122 120 EKAERN 125 (162)
Q Consensus 120 d~a~~~ 125 (162)
|.....
T Consensus 252 DAvGr~ 257 (596)
T COG0465 252 DAVGRQ 257 (596)
T ss_pred hhcccc
Confidence 886553
No 227
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.20 E-value=1.2e-05 Score=63.18 Aligned_cols=94 Identities=18% Similarity=0.319 Sum_probs=55.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEeccCCC--------hhhhc-ceeE-e--ec------C-eEEEecc
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSRDTT--------EADIK-QRRE-I--VN------G-TAIYYDQ 102 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~~~~--------~~dL~-g~~~-~--~~------G-~~~~~~g 102 (162)
..+.++|+||+||||++..+|+.+... +-=+-+.+-.+ ..||- |... + .+ | ..+..++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 468999999999999999999776443 21111111001 11121 1100 0 00 1 1122221
Q ss_pred -------HHHHHhhcCcEEEEeCCCC---CCccHHHHHHHhhcCCe
Q psy4122 103 -------SAVRAAIEGRVLILEGIEK---AERNVLPVLNNLLENRE 138 (162)
Q Consensus 103 -------pl~~A~~~G~vlllDEId~---a~~~v~~~L~~lle~r~ 138 (162)
.+-+|+++..++++|||-. .++.+.+.+..+|+...
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~k 131 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGK 131 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCC
Confidence 2445667779999999954 67788999999998655
No 228
>KOG0652|consensus
Probab=98.19 E-value=6.8e-07 Score=75.40 Aligned_cols=73 Identities=14% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~ 121 (162)
..+-+|++||||+|||-+|++.|+.++..+..+.. .+|++. .+-+|. ..+.-++..|- +...+++|||+|.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg------PQLVQM-fIGdGA-kLVRDAFaLAKEkaP~IIFIDElDA 275 (424)
T KOG0652|consen 204 PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG------PQLVQM-FIGDGA-KLVRDAFALAKEKAPTIIFIDELDA 275 (424)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc------hHHHhh-hhcchH-HHHHHHHHHhhccCCeEEEEechhh
Confidence 34459999999999999999999988765442222 122211 111221 11112333333 3457999999986
Q ss_pred CC
Q psy4122 122 AE 123 (162)
Q Consensus 122 a~ 123 (162)
+.
T Consensus 276 IG 277 (424)
T KOG0652|consen 276 IG 277 (424)
T ss_pred hc
Confidence 43
No 229
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.18 E-value=7.5e-06 Score=60.32 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=25.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
.+++.||||+|||+++..++... +.++.++.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 36899999999999999998766 4555555553
No 230
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=98.17 E-value=8.2e-06 Score=70.50 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=62.9
Q ss_pred HHHHHHHHHhc--CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCC-hhhhc-ceeEe--------ecCeEE
Q psy4122 31 LSHLRWILQKD--NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTT-EADIK-QRREI--------VNGTAI 98 (162)
Q Consensus 31 ~~~L~~i~~~~--~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~-~~dL~-g~~~~--------~~G~~~ 98 (162)
.+.+..+++++ ..+.++++.|+.|||||++.+++...+...-..+.+.+-|. ++.++ |..++ ......
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~ 86 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKS 86 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccc
Confidence 34444443333 45668999999999999999999877744322232222222 33344 31111 111111
Q ss_pred Ee----ccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 99 YY----DQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 99 ~~----~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle 135 (162)
+. ...+.+-+++-.+|++|||...+..+++.+...|.
T Consensus 87 ~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 87 QCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred cccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhh
Confidence 11 11233445666899999999999999998887665
No 231
>KOG0741|consensus
Probab=98.15 E-value=3.4e-07 Score=82.85 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=27.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC-CceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ-REVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg-~p~~~v~~~ 78 (162)
-+||+||||||||-+|+++...+| ++...++..
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 489999999999999999999886 455556553
No 232
>PRK13947 shikimate kinase; Provisional
Probab=98.13 E-value=2.5e-06 Score=65.02 Aligned_cols=28 Identities=14% Similarity=0.136 Sum_probs=26.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+++|+|+||||||++++.+|+.+|.++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~i 30 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFI 30 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 7999999999999999999999999865
No 233
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.13 E-value=1.2e-05 Score=63.69 Aligned_cols=105 Identities=16% Similarity=0.197 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcce-----eEeec---
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQR-----REIVN--- 94 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~-----~~~~~--- 94 (162)
++++=.+.++.++.+. .+-.++.||||||||+++..++..+ |..+..+..... -..+|... .++..
T Consensus 2 L~~~Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~-Aa~~L~~~~~~~a~Ti~~~l~ 78 (196)
T PF13604_consen 2 LNEEQREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNK-AAKELREKTGIEAQTIHSFLY 78 (196)
T ss_dssp S-HHHHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHH-HHHHHHHHHTS-EEEHHHHTT
T ss_pred CCHHHHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHH-HHHHHHHhhCcchhhHHHHHh
Confidence 3555566777776531 2346778999999999999887554 444433333211 12222211 11100
Q ss_pred --CeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 95 --GTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 95 --G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
........+ ......++|+||...++...+..|...+..
T Consensus 79 ~~~~~~~~~~~---~~~~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 79 RIPNGDDEGRP---ELPKKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp EECCEECCSSC---C-TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred cCCcccccccc---cCCcccEEEEecccccCHHHHHHHHHHHHh
Confidence 000000000 034567999999999999999999998876
No 234
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.11 E-value=5.3e-06 Score=69.30 Aligned_cols=104 Identities=25% Similarity=0.327 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHhcCC-CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHH
Q psy4122 26 LTQDWLSHLRWILQKDNM-SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~-g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl 104 (162)
+-+.+++++-+|...+.. +.|+||+|..|+||+++++..|...+..+..+.++..-+..|.... + ...+
T Consensus 12 lf~~ai~hi~ri~RvL~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~~~~f~~d--L--------k~~~ 81 (268)
T PF12780_consen 12 LFDEAIEHIARISRVLSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYSIKDFKED--L--------KKAL 81 (268)
T ss_dssp --HHHHHHHHHHHHHHCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTHHHHHHHH--H--------HHHH
T ss_pred eHHHHHHHHHHHHHHHcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcCHHHHHHH--H--------HHHH
Confidence 357888888888877663 4599999999999999999999998877655544443333332210 0 0123
Q ss_pred HHHhhcC--cEEEEeCCCCCCccHHHHHHHhhcCCeE
Q psy4122 105 VRAAIEG--RVLILEGIEKAERNVLPVLNNLLENREM 139 (162)
Q Consensus 105 ~~A~~~G--~vlllDEId~a~~~v~~~L~~lle~r~l 139 (162)
.+|-.+| .+++++|-+-..+..++.+|.+|..|++
T Consensus 82 ~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGei 118 (268)
T PF12780_consen 82 QKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEI 118 (268)
T ss_dssp HHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-
T ss_pred HHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCC
Confidence 3444344 5788999888899999999999999976
No 235
>KOG0729|consensus
Probab=98.11 E-value=3.7e-06 Score=71.18 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=46.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh--hcCcEEEEeCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA--IEGRVLILEGIE 120 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~--~~G~vlllDEId 120 (162)
..+-+||+||||+|||-.|+++|..++.-+.++..++. .+..+| ++...+ . -+.... ++..++++||||
T Consensus 210 ppkgvllygppgtgktl~aravanrtdacfirvigsel--vqkyvg----egarmv--r-elf~martkkaciiffdeid 280 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL--VQKYVG----EGARMV--R-ELFEMARTKKACIIFFDEID 280 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH--HHHHhh----hhHHHH--H-HHHHHhcccceEEEEeeccc
Confidence 44569999999999999999999999988777766422 223332 111100 0 111112 344689999998
Q ss_pred CCC
Q psy4122 121 KAE 123 (162)
Q Consensus 121 ~a~ 123 (162)
.+.
T Consensus 281 aig 283 (435)
T KOG0729|consen 281 AIG 283 (435)
T ss_pred ccc
Confidence 743
No 236
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.11 E-value=3.2e-06 Score=63.91 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+..++|+|+||||||++++.+|+.+|.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~ 33 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFI 33 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 568999999999999999999999998765
No 237
>PRK10536 hypothetical protein; Provisional
Probab=98.11 E-value=2.1e-05 Score=65.62 Aligned_cols=98 Identities=13% Similarity=0.125 Sum_probs=59.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH-Hh-CCceEEEEe-ccCCChhhhcce-eEe---------------------------
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLE-LT-QREVEYICL-SRDTTEADIKQR-REI--------------------------- 92 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~-~l-g~p~~~v~~-~~~~~~~dL~g~-~~~--------------------------- 92 (162)
...++++||+|||||+||.++|. .+ +..+..+-+ ++..+..+.+|. +..
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~ 153 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQY 153 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 56899999999999999999886 33 544554443 355555554441 100
Q ss_pred ----ecCeEEEeccHHHHHh-hcCcEEEEeCCCCCCccHHHHHHHhhcCC-eEEE
Q psy4122 93 ----VNGTAIYYDQSAVRAA-IEGRVLILEGIEKAERNVLPVLNNLLENR-EMHL 141 (162)
Q Consensus 93 ----~~G~~~~~~gpl~~A~-~~G~vlllDEId~a~~~v~~~L~~lle~r-~l~l 141 (162)
..|.....+-...+.- .+.+++++||...+.+..+..+..-+..+ .+++
T Consensus 154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIV 208 (262)
T ss_pred HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCEEEE
Confidence 0122222211111110 13479999999999998888887776644 4444
No 238
>KOG0728|consensus
Probab=98.08 E-value=2.8e-06 Score=71.43 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc-CcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE-GRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~-G~vlllDEId~ 121 (162)
..+-+||+||||+|||-||+++|+.....+.+++.++. .+..+| .|+. ....-++-|-.+ ..+++.||||.
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~c~firvsgsel--vqk~ig-----egsr-mvrelfvmarehapsiifmdeids 251 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL--VQKYIG-----EGSR-MVRELFVMAREHAPSIIFMDEIDS 251 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH--HHHHhh-----hhHH-HHHHHHHHHHhcCCceEeeecccc
Confidence 34569999999999999999999988877776665422 333333 2221 111123334333 46899999987
Q ss_pred CCc
Q psy4122 122 AER 124 (162)
Q Consensus 122 a~~ 124 (162)
..+
T Consensus 252 igs 254 (404)
T KOG0728|consen 252 IGS 254 (404)
T ss_pred ccc
Confidence 644
No 239
>PRK08118 topology modulation protein; Reviewed
Probab=98.08 E-value=3.5e-06 Score=65.32 Aligned_cols=28 Identities=32% Similarity=0.339 Sum_probs=26.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++++||||+||||+|+.+++.++.|+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~ 30 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH 30 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce
Confidence 5899999999999999999999999854
No 240
>KOG3347|consensus
Probab=98.07 E-value=4.8e-06 Score=64.66 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
+-++|+.|-||||||++++++|+.+|.+ +++++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~--~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE--YIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc--eEehh
Confidence 3489999999999999999999999987 44544
No 241
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6e-06 Score=71.56 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=35.7
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDT 81 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~ 81 (162)
-...+|+|++||+|+|||.+|+.+|.+.|.|+..+....-|
T Consensus 47 EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 47 EVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred ccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 34568999999999999999999999999999988776433
No 242
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.07 E-value=1.9e-05 Score=61.03 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
|+.++|.|+||+||||+++.+++.++.+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~ 30 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPW 30 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence 56789999999999999999999987764
No 243
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=3.3e-05 Score=66.37 Aligned_cols=105 Identities=14% Similarity=0.054 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC--ceEEEEec---------cCCChhhhcceeEeecC-eE
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR--EVEYICLS---------RDTTEADIKQRREIVNG-TA 97 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~--p~~~v~~~---------~~~~~~dL~g~~~~~~G-~~ 97 (162)
.-++|...+.+....+-+|+.||+|+||+++|..+|+.+-- |-..-.|. ..+.+ |+.--.+ +++ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HP-D~~~i~p-~~~~~~ 87 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHP-DYYTLTP-EKGKSS 87 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCC-CEEEEec-cccccc
Confidence 44556666666556667889999999999999999987732 10000110 00111 1110000 011 11
Q ss_pred EEecc--HHHHHh----hcC--cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 98 IYYDQ--SAVRAA----IEG--RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 98 ~~~~g--pl~~A~----~~G--~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+-++. -+.+.+ .+| .|++||+.++++.+..++|+..||+
T Consensus 88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (334)
T PRK07993 88 LGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE 134 (334)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC
Confidence 11110 011111 123 5999999999999999999999995
No 244
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.06 E-value=2.3e-05 Score=62.13 Aligned_cols=90 Identities=12% Similarity=0.223 Sum_probs=49.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc--eEEEEeccCCChhhhc--ceeE-ee----c-CeEEEeccHHHHHhhc-CcEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE--VEYICLSRDTTEADIK--QRRE-IV----N-GTAIYYDQSAVRAAIE-GRVL 114 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p--~~~v~~~~~~~~~dL~--g~~~-~~----~-G~~~~~~gpl~~A~~~-G~vl 114 (162)
-+++.||+||||||++..++..+..+ ...+.+. +. . ++. .... +. + +...|.+ .+..|++. ..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e-~~-~-E~~~~~~~~~i~q~~vg~~~~~~~~-~i~~aLr~~pd~i 78 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIE-DP-I-EFVHESKRSLINQREVGLDTLSFEN-ALKAALRQDPDVI 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEc-CC-c-cccccCccceeeecccCCCccCHHH-HHHHHhcCCcCEE
Confidence 47899999999999999988777533 2223332 21 1 111 0001 11 1 1122221 34455654 5799
Q ss_pred EEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 115 ILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 115 llDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
++||+. .++....+......+...+
T Consensus 79 i~gEir--d~e~~~~~l~~a~~G~~v~ 103 (198)
T cd01131 79 LVGEMR--DLETIRLALTAAETGHLVM 103 (198)
T ss_pred EEcCCC--CHHHHHHHHHHHHcCCEEE
Confidence 999994 3444444445555665433
No 245
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.06 E-value=4.7e-06 Score=73.88 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
.++++|+||||||||++|+.+|..++.|+..+...
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 36899999999999999999999999998877754
No 246
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.06 E-value=4.6e-06 Score=62.11 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=25.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+++|+|+||||||++++.+|+.+|.++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~ 28 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999998854
No 247
>PHA02774 E1; Provisional
Probab=98.05 E-value=2.3e-05 Score=71.86 Aligned_cols=91 Identities=14% Similarity=0.285 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce-EEEEeccCCChhhhcceeEeecCeEEEeccHHHHH
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV-EYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA 107 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~-~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A 107 (162)
..+..|+.+++..-....++|+||||||||+++..+++.++..+ .+++.+. -.| -.|+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s-----------------~Fw-Lqpl~-- 478 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS-----------------HFW-LQPLA-- 478 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc-----------------ccc-cchhc--
Confidence 56677777876543333699999999999999999999886443 3343311 112 12443
Q ss_pred hhcCcEEEEeCCCCCC-ccHHHHHHHhhcCCeEEE
Q psy4122 108 AIEGRVLILEGIEKAE-RNVLPVLNNLLENREMHL 141 (162)
Q Consensus 108 ~~~G~vlllDEId~a~-~~v~~~L~~lle~r~l~l 141 (162)
...+++|||+-... .-....|..+|+.+.+.|
T Consensus 479 --d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~l 511 (613)
T PHA02774 479 --DAKIALLDDATHPCWDYIDTYLRNALDGNPVSI 511 (613)
T ss_pred --cCCEEEEecCcchHHHHHHHHHHHHcCCCccee
Confidence 44799999994332 334557899999886555
No 248
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=6.9e-05 Score=64.15 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=24.1
Q ss_pred cEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 112 RVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 112 ~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
.|+++|+++.++++..+.|...||+.
T Consensus 115 kV~iiEp~~~Ld~~a~naLLk~LEep 140 (325)
T PRK08699 115 RVILIHPAESMNLQAANSLLKVLEEP 140 (325)
T ss_pred eEEEEechhhCCHHHHHHHHHHHHhC
Confidence 68999999999999999999999974
No 249
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.04 E-value=3.7e-06 Score=61.89 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=44.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEE--Eec-------cHHHHHhhcCcEEEEe
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAI--YYD-------QSAVRAAIEGRVLILE 117 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~--~~~-------gpl~~A~~~G~vlllD 117 (162)
+++.|||||||||+|+.+++.++. ..++.|.-...+.+.. ....... +.+ .-+..++..|.-+++|
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~----~~i~~D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd 76 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA----VVISQDEIRRRLAGED-PPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVD 76 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE----EEEEHHHHHHHHCCSS-SGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC----EEEeHHHHHHHHcccc-cccchhHHHHHHHHHHHHHHHHHHHHHcCCCceec
Confidence 689999999999999999999982 2232221112222200 0000000 110 1122445678888889
Q ss_pred CCCCCCccHHHHHHHhhc
Q psy4122 118 GIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 118 EId~a~~~v~~~L~~lle 135 (162)
.-+... .....+..++.
T Consensus 77 ~~~~~~-~~r~~~~~~~~ 93 (143)
T PF13671_consen 77 NTNLSR-EERARLRELAR 93 (143)
T ss_dssp SS--SH-HHHHHHHHHHH
T ss_pred cCcCCH-HHHHHHHHHHH
Confidence 776655 44455666665
No 250
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.03 E-value=1.1e-05 Score=70.48 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHHHhCC--ceEEEEec
Q psy4122 31 LSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLELTQR--EVEYICLS 78 (162)
Q Consensus 31 ~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~~lg~--p~~~v~~~ 78 (162)
.-.+-+|++... .|+.+||.||||||||.||..+|+.+|. |+..++.+
T Consensus 36 agiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 36 AGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp HHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred HHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 334557777655 7889999999999999999999999984 55545444
No 251
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=6e-05 Score=64.20 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--eEE-EEec-cCCChhhhcc-eeEe-ecCeE----
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--VEY-ICLS-RDTTEADIKQ-RREI-VNGTA---- 97 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--~~~-v~~~-~~~~~~dL~g-~~~~-~~G~~---- 97 (162)
+...+.|+..+......+..|++||+|+||+++|..+|+.+-.. +-. .+|. ....-.|+.- .+.. .+|..
T Consensus 10 ~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~ 89 (314)
T PRK07399 10 PLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITAS 89 (314)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchh
Confidence 56677888888777666789999999999999999999876322 100 0010 0111122221 1000 01110
Q ss_pred --------------EEecc--HHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 98 --------------IYYDQ--SAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 98 --------------~~~~g--pl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+-.+. .+.+.+ ....|++||++++++.+..++|+..||+
T Consensus 90 ~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 90 EAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred hhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 00000 111111 1236999999999999999999999995
No 252
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.03 E-value=6.3e-05 Score=62.51 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce-EEEEeccCCChhhhccee--Eee-cCeEEEec
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV-EYICLSRDTTEADIKQRR--EIV-NGTAIYYD 101 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~-~~v~~~~~~~~~dL~g~~--~~~-~G~~~~~~ 101 (162)
.++...+.|++++.. .+..+++.||+|+||||+.+.+...+..+- ..+.+ +|...-.+-+.. .+. .....|.+
T Consensus 64 ~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~~i~~~~~~iiti-Edp~E~~~~~~~q~~v~~~~~~~~~~ 140 (264)
T cd01129 64 LKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITV-EDPVEYQIPGINQVQVNEKAGLTFAR 140 (264)
T ss_pred CCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEE-CCCceecCCCceEEEeCCcCCcCHHH
Confidence 467777777777642 233799999999999999998876665432 23333 232221222211 111 11122321
Q ss_pred cHHHHHhhc-CcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 102 QSAVRAAIE-GRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 102 gpl~~A~~~-G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.+..+++. ..+++++||.- ++....+......|.+.+
T Consensus 141 -~l~~~lR~~PD~i~vgEiR~--~e~a~~~~~aa~tGh~v~ 178 (264)
T cd01129 141 -GLRAILRQDPDIIMVGEIRD--AETAEIAVQAALTGHLVL 178 (264)
T ss_pred -HHHHHhccCCCEEEeccCCC--HHHHHHHHHHHHcCCcEE
Confidence 34455664 47999999964 333343444445665544
No 253
>PRK03839 putative kinase; Provisional
Probab=98.02 E-value=5.3e-06 Score=64.14 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=25.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|+|+|||||||+++.+|+.++.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~i 29 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999998864
No 254
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.02 E-value=1.1e-05 Score=66.71 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=34.6
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc---eE-EEEeccC--CChhhhcc
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE---VE-YICLSRD--TTEADIKQ 88 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p---~~-~v~~~~~--~~~~dL~g 88 (162)
..-.|+.++++||+|||||+|++.+++..... .. .+.+..+ .+..++..
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~ 66 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQR 66 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHH
Confidence 44568899999999999999999999877552 22 2232333 56666653
No 255
>KOG2170|consensus
Probab=98.01 E-value=1.3e-05 Score=68.22 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEE--cCCCchHHHHHHHHHHHhCC---ceEEEEe-----c-cC-CChhhhcceeEeecC
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLI--GKPGSLRRSLAMSYLELTQR---EVEYICL-----S-RD-TTEADIKQRREIVNG 95 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~--GppG~GKT~La~~lA~~lg~---p~~~v~~-----~-~~-~~~~dL~g~~~~~~G 95 (162)
+..+..|+.-+..-...||+.|. |+|||||+..++.+|+.+-+ ..-+|.. | ++ ...++..- .+
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~--eL--- 166 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKE--EL--- 166 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHH--HH---
Confidence 44555555555555566777664 99999999999999987632 1111111 1 11 11111110 00
Q ss_pred eEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 96 TAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 96 ~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle 135 (162)
-.|..+-+ +.-...++|+||+|++++..+++|.+.||
T Consensus 167 -~~~v~~~v--~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 167 -KNRVRGTV--QACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred -HHHHHHHH--HhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 00111111 11234799999999999999999999999
No 256
>PRK13695 putative NTPase; Provisional
Probab=98.01 E-value=2.3e-05 Score=60.39 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.++|+|++|+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999987654
No 257
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.00 E-value=6.2e-06 Score=73.18 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
.++++|+||||||||++|+.+|..++.|+..+.+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 46899999999999999999999999999888765
No 258
>PRK00625 shikimate kinase; Provisional
Probab=97.99 E-value=7.2e-06 Score=64.22 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=26.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEY 74 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~ 74 (162)
+++|+|.||||||++++.+|+.+|.++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id 30 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFD 30 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 69999999999999999999999998653
No 259
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.98 E-value=4.1e-05 Score=58.93 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=23.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
+-++++||+||||||++++++..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 45789999999999999999988753
No 260
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.98 E-value=1.1e-05 Score=70.40 Aligned_cols=49 Identities=16% Similarity=0.372 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhc-CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 30 WLSHLRWILQKD-NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 30 ~~~~L~~i~~~~-~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
..-.+.+|++.- ..|+-+|+.||||||||.||..+|+.+|..+-+++++
T Consensus 50 AaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~is 99 (450)
T COG1224 50 AAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAIS 99 (450)
T ss_pred hhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeec
Confidence 334456777766 5788999999999999999999999998544444443
No 261
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.98 E-value=4.8e-05 Score=65.28 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEE-Eec---cCCChhhhcceeEeecCeE
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYI-CLS---RDTTEADIKQRREIVNGTA 97 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v-~~~---~~~~~~dL~g~~~~~~G~~ 97 (162)
..-+.|...+......+-.|+.||+|+||+++|+.+|+.+.-. +-.+ +|. .... .|+..-.. .+|+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H-PD~~~i~p-~~~~~ 86 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH-PDFHILEP-IDNKD 86 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC-CCEEEEcc-ccCCC
Confidence 3445566666655555678899999999999999999877431 1100 000 0111 11211000 01221
Q ss_pred EEecc--HHHHHh----hcC--cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 98 IYYDQ--SAVRAA----IEG--RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 98 ~~~~g--pl~~A~----~~G--~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.=++. -+.+.+ .+| .|++||++++++....++|+..||+
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE 133 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE 133 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC
Confidence 11110 011111 123 5899999999999999999999995
No 262
>PRK14530 adenylate kinase; Provisional
Probab=97.96 E-value=8.6e-06 Score=65.00 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=26.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+..++|+||||+||||+++.+|+.+|.+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 557999999999999999999999997643
No 263
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.96 E-value=2e-05 Score=59.56 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
+.+.-+.+.+.+..++.++|.|+.|+|||++++.+++.+|.+
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344444555555577889999999999999999999999865
No 264
>PRK13949 shikimate kinase; Provisional
Probab=97.95 E-value=8.8e-06 Score=63.19 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=26.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+++|+|+||+|||++++.+|+.++.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~i 30 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFI 30 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 6999999999999999999999998865
No 265
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.94 E-value=3.2e-05 Score=65.72 Aligned_cols=112 Identities=15% Similarity=0.230 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhcCCC--CcEEEEcCCCchHHHHHHHHHHHhC---------CceEEEEeccCCChhhhccee-----
Q psy4122 27 TQDWLSHLRWILQKDNMS--QDVFLIGKPGSLRRSLAMSYLELTQ---------REVEYICLSRDTTEADIKQRR----- 90 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g--~~vlL~GppG~GKT~La~~lA~~lg---------~p~~~v~~~~~~~~~dL~g~~----- 90 (162)
....++.|++++..=... .+++|+|++|.|||++++.|+.... .|+..+++.+.-+...+-...
T Consensus 42 A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 42 AKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 466777777777632211 2799999999999999999997653 467777777665555543210
Q ss_pred -EeecCeEEEe-ccHHHHHhhc--CcEEEEeCCCCC-------CccHHHHHHHhhcCCe
Q psy4122 91 -EIVNGTAIYY-DQSAVRAAIE--GRVLILEGIEKA-------ERNVLPVLNNLLENRE 138 (162)
Q Consensus 91 -~~~~G~~~~~-~gpl~~A~~~--G~vlllDEId~a-------~~~v~~~L~~lle~r~ 138 (162)
+.......-. ......-++. -.+|+|||++.+ ..++++.|..+-.+-+
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 1111111000 0111122322 368999999773 1245666666643333
No 266
>PRK14532 adenylate kinase; Provisional
Probab=97.94 E-value=8.3e-06 Score=63.36 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=24.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
++++.|||||||||+++.+|+.+|.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~ 28 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ 28 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 589999999999999999999998764
No 267
>PRK13946 shikimate kinase; Provisional
Probab=97.93 E-value=1.2e-05 Score=62.88 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=29.8
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+.+..++++|+|.+|||||++++.+|+.+|.|+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i 39 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFL 39 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeE
Confidence 3345678999999999999999999999999865
No 268
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.91 E-value=7.1e-05 Score=62.28 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC-ceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR-EVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA 108 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~-p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~ 108 (162)
.+++-+..++..-+. ||||+|.-|+|||+|++++-...+. -..-+.++. +||..-+.+. -++++.
T Consensus 72 L~~NT~~F~~G~pAN-nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k----~dl~~Lp~l~---------~~Lr~~ 137 (287)
T COG2607 72 LVRNTEQFAEGLPAN-NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK----EDLATLPDLV---------ELLRAR 137 (287)
T ss_pred HHHHHHHHHcCCccc-ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH----HHHhhHHHHH---------HHHhcC
Confidence 334444455444443 8999999999999999997766543 344566652 2343211000 234555
Q ss_pred hcCcEEEEeCCCC-CCccHHHHHHHhhcCCeEEEcCCcEEecCcchH
Q psy4122 109 IEGRVLILEGIEK-AERNVLPVLNNLLENREMHLEDGRFLVSASTYD 154 (162)
Q Consensus 109 ~~G~vlllDEId~-a~~~v~~~L~~lle~r~l~l~~g~~i~~~~~f~ 154 (162)
.+.-||+.|++.- -..+.-..|.++||.+----|+.-.+.+..|-+
T Consensus 138 ~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 138 PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 5667899999843 445567888899987655555555555555443
No 269
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.91 E-value=1.3e-05 Score=61.24 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEY 74 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~ 74 (162)
++++|+|.+|||||++++.+|+.+|.|+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d 32 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVD 32 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 579999999999999999999999998653
No 270
>KOG0730|consensus
Probab=97.91 E-value=2.2e-05 Score=72.41 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEE-EeccHHHHHhhc--CcEEEEeCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAI-YYDQSAVRAAIE--GRVLILEGI 119 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~-~~~gpl~~A~~~--G~vlllDEI 119 (162)
....+|++||||||||.+++++|+..+-.+..++++ +++..+ .|.+. .-...+.+|.++ +.+++||||
T Consensus 217 ~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~p------eli~k~---~gEte~~LR~~f~~a~k~~~psii~IdEl 287 (693)
T KOG0730|consen 217 PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGP------ELISKF---PGETESNLRKAFAEALKFQVPSIIFIDEL 287 (693)
T ss_pred CCCCccccCCCCCChHHHHHHHHHHhCceeEecccH------HHHHhc---ccchHHHHHHHHHHHhccCCCeeEeHHhH
Confidence 344689999999999999999999999665555543 343211 11110 000133444433 579999999
Q ss_pred CCCCc----------cHHHHHHHhhc
Q psy4122 120 EKAER----------NVLPVLNNLLE 135 (162)
Q Consensus 120 d~a~~----------~v~~~L~~lle 135 (162)
|..-| .+...|..+++
T Consensus 288 d~l~p~r~~~~~~e~Rv~sqlltL~d 313 (693)
T KOG0730|consen 288 DALCPKREGADDVESRVVSQLLTLLD 313 (693)
T ss_pred hhhCCcccccchHHHHHHHHHHHHHh
Confidence 88665 36777888887
No 271
>PRK07261 topology modulation protein; Provisional
Probab=97.91 E-value=1.2e-05 Score=62.46 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=25.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++++|+||+||||+|+.+++.++.|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i 29 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVL 29 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeE
Confidence 4899999999999999999999988743
No 272
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.90 E-value=1.8e-05 Score=72.71 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=62.7
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe-------------------------ccC----CC
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL-------------------------SRD----TT 82 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~-------------------------~~~----~~ 82 (162)
-.++.+-.....|+.+++.||+|||||+|.+++|.+..+--=.+++ +++ .+
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~ 486 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFS 486 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCC
Confidence 3444444456679999999999999999999999765321111111 111 11
Q ss_pred hhhhcc---eeEe------ecCeEEEec----c-----HHHHHh-hcCcEEEEeCC-CCCCccHHHHHHHhhcC
Q psy4122 83 EADIKQ---RREI------VNGTAIYYD----Q-----SAVRAA-IEGRVLILEGI-EKAERNVLPVLNNLLEN 136 (162)
Q Consensus 83 ~~dL~g---~~~~------~~G~~~~~~----g-----pl~~A~-~~G~vlllDEI-d~a~~~v~~~L~~lle~ 136 (162)
.++|.. .-.+ -++...|.+ | .+++.+ .+..+++|||. ...+++....|++++.+
T Consensus 487 d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 487 DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 122211 0000 012233432 1 233433 46789999999 66888999999999986
No 273
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.90 E-value=4.1e-05 Score=62.86 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhc-CCCCcEEEEcCCCchHHHHHHHHHHHhCCc-eEEEEeccCCChhhhccee--Ee--ecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKD-NMSQDVFLIGKPGSLRRSLAMSYLELTQRE-VEYICLSRDTTEADIKQRR--EI--VNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~-~~g~~vlL~GppG~GKT~La~~lA~~lg~p-~~~v~~~~~~~~~dL~g~~--~~--~~G~~~~~ 100 (162)
.+...+.+..++... ..+.++++.|++|+||||+.+++...+... ...+.+ ++...-.+-+.. .+ ..+...+.
T Consensus 109 ~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~i-Ed~~E~~l~~~~~~~~~~~~~~~~~~ 187 (270)
T PF00437_consen 109 SGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTI-EDPPELRLPGPNQIQIQTRRDEISYE 187 (270)
T ss_dssp THHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEE-ESSS-S--SCSSEEEEEEETTTBSHH
T ss_pred chhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEe-ccccceeecccceEEEEeecCcccHH
Confidence 344445555554433 245699999999999999999999887666 444444 332222222211 11 11222222
Q ss_pred ccHHHHHhhc-CcEEEEeCCCCCCccHHHHHHHhhcCCeEE
Q psy4122 101 DQSAVRAAIE-GRVLILEGIEKAERNVLPVLNNLLENREMH 140 (162)
Q Consensus 101 ~gpl~~A~~~-G~vlllDEId~a~~~v~~~L~~lle~r~l~ 140 (162)
+ .+..++|. ..+++++||.- +++... ...+..|...
T Consensus 188 ~-~l~~~LR~~pD~iiigEiR~--~e~~~~-~~a~~tGh~~ 224 (270)
T PF00437_consen 188 D-LLKSALRQDPDVIIIGEIRD--PEAAEA-IQAANTGHLG 224 (270)
T ss_dssp H-HHHHHTTS--SEEEESCE-S--CHHHHH-HHHHHTT-EE
T ss_pred H-HHHHHhcCCCCcccccccCC--HhHHHH-HHhhccCCce
Confidence 1 24445664 47999999984 466666 5566666654
No 274
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.89 E-value=5.7e-05 Score=66.65 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc----------
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE---------- 110 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~---------- 110 (162)
.-|++|+||+|+|||||..++++.. +....++-++ .++... +++.|+++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~----se~f~~--------------~~v~a~~~~~~~~Fk~~y 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT----SEDFTN--------------DFVKALRDNEMEKFKEKY 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc----HHHHHH--------------HHHHHHHhhhHHHHHHhh
Confidence 3489999999999999999998654 3323333332 334332 44555554
Q ss_pred -CcEEEEeCCCCCCcc------HHHHHHHhhcCC-eEEE
Q psy4122 111 -GRVLILEGIEKAERN------VLPVLNNLLENR-EMHL 141 (162)
Q Consensus 111 -G~vlllDEId~a~~~------v~~~L~~lle~r-~l~l 141 (162)
-.+++||+|...... ....+|.+.+++ ++.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvl 213 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVL 213 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEE
Confidence 569999999775443 556677777765 5655
No 275
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.89 E-value=1.2e-05 Score=63.27 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=27.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEY 74 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~ 74 (162)
.++.|+|++|+||||+.+++|+.++.++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D 32 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFID 32 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCccc
Confidence 589999999999999999999999999863
No 276
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.89 E-value=2.9e-05 Score=66.60 Aligned_cols=107 Identities=12% Similarity=0.184 Sum_probs=57.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCC-C-hhhhcceeEee--cCeEEEeccHHHHHhh-------
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDT-T-EADIKQRREIV--NGTAIYYDQSAVRAAI------- 109 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~-~-~~dL~g~~~~~--~G~~~~~~gpl~~A~~------- 109 (162)
-+++.|.||||||.||-.++..+ +....++..+... . ..+.+...... .....-....+.+.+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 46788999999999999999887 2333334443221 1 11111111100 0111111122333332
Q ss_pred cCcEEEEeCCCCCCc--------cHHHHHHHhhcCCe-EE-EcCCcEEecCcc
Q psy4122 110 EGRVLILEGIEKAER--------NVLPVLNNLLENRE-MH-LEDGRFLVSAST 152 (162)
Q Consensus 110 ~G~vlllDEId~a~~--------~v~~~L~~lle~r~-l~-l~~g~~i~~~~~ 152 (162)
+=.++|+||.+++.. ...+.|..++.... ++ +-|..+.+.+.+
T Consensus 83 ~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e 135 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKRAKVVVFFYDENQSIRPSE 135 (352)
T ss_pred cCCEEEEehhHhhhhccccccccccHHHHHHHHhcCCEEEEEEccccEeeccc
Confidence 348999999999988 23567777777543 32 235444444444
No 277
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.89 E-value=1.4e-05 Score=58.84 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+.+.|+||||||++|+.+|+.+|.|+.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~ 28 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYL 28 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 689999999999999999999998864
No 278
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.88 E-value=9.2e-06 Score=62.41 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
|+.++|+||+|||||++++.+++....
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 467899999999999999999986543
No 279
>PRK14531 adenylate kinase; Provisional
Probab=97.87 E-value=1.6e-05 Score=62.02 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.+.+++.||||+||||+++.+|+.+|.+.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~ 30 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRH 30 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 34799999999999999999999999874
No 280
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.87 E-value=0.00011 Score=62.13 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC--ceEEEEeccCCChhhhcc--eeEe--ecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR--EVEYICLSRDTTEADIKQ--RREI--VNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~--p~~~v~~~~~~~~~dL~g--~~~~--~~G~~~~~ 100 (162)
++...+.|+.++. .++++++.|++|+||||++++++..... |-.++..-+|...-.+.+ ...+ ..+...|.
T Consensus 118 ~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~ 194 (299)
T TIGR02782 118 TAAQRDVLREAVL---ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMT 194 (299)
T ss_pred CHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHH
Confidence 4445566666654 4679999999999999999999987642 223333324432212211 0111 11211222
Q ss_pred ccHHHHHhhcC-cEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 101 DQSAVRAAIEG-RVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 101 ~gpl~~A~~~G-~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
+ .+..|+|.. .++++.||.- ++....|+ .+..|
T Consensus 195 ~-~l~~aLR~~pD~iivGEiR~--~ea~~~l~-a~~tG 228 (299)
T TIGR02782 195 R-LLKATLRLRPDRIIVGEVRG--GEALDLLK-AWNTG 228 (299)
T ss_pred H-HHHHHhcCCCCEEEEeccCC--HHHHHHHH-HHHcC
Confidence 1 234455554 7999999974 35555544 34444
No 281
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.86 E-value=4e-05 Score=59.97 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
+++...+.|+..+.. ++.+++.||+|+||||+.+.++.........+.+
T Consensus 10 ~~~~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~i 58 (186)
T cd01130 10 FSPLQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLAFIPPDERIITI 58 (186)
T ss_pred CCHHHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEE
Confidence 578888888888764 7899999999999999999999887533333433
No 282
>PRK06217 hypothetical protein; Validated
Probab=97.86 E-value=1.4e-05 Score=62.17 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=25.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.|+|+|.+|+||||+++.+++.+|.|+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~ 30 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHL 30 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 5899999999999999999999998853
No 283
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00013 Score=62.54 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc----eEEEEec----cCCChhhhcce--eEeecC--
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE----VEYICLS----RDTTEADIKQR--REIVNG-- 95 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p----~~~v~~~----~~~~~~dL~g~--~~~~~G-- 95 (162)
+...+.|...+......+-+||.||+|+||+++|..+|+.+.-. +....+. ....+ |+.-- .+.+.|
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HP-D~~~i~~~p~~~~~k 88 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHP-DLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCC-CEEEEecCCCccccc
Confidence 34556666666655555569999999999999999999766321 1100000 11111 12100 000011
Q ss_pred --eEEEecc--HHHHHh----hcC--cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 96 --TAIYYDQ--SAVRAA----IEG--RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 96 --~~~~~~g--pl~~A~----~~G--~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..+-+|. .+.+.+ .+| .|++||+.++++.+..++|+..||+
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE 139 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE 139 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC
Confidence 0111111 011100 112 6999999999999999999999995
No 284
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.86 E-value=0.00013 Score=62.65 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=55.7
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--eEEEEeccCCChhhhcceeE-e---ecC--eEEEeccHH
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--VEYICLSRDTTEADIKQRRE-I---VNG--TAIYYDQSA 104 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--~~~v~~~~~~~~~dL~g~~~-~---~~G--~~~~~~gpl 104 (162)
.+..++.. .+..+++.||+|+||||+.+.+...+..+ ...+.+ ++.-.-..-+... + .-| ...|.+ .+
T Consensus 113 ~l~~~~~~--~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp~E~~~~~~~~~i~q~evg~~~~~~~~-~l 188 (343)
T TIGR01420 113 VLRELAER--PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDPIEYVHRNKRSLINQREVGLDTLSFAN-AL 188 (343)
T ss_pred HHHHHHhh--cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCChhhhccCccceEEccccCCCCcCHHH-HH
Confidence 34444432 24589999999999999999998876543 223333 2211101111000 1 112 122322 34
Q ss_pred HHHhhc-CcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 105 VRAAIE-GRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 105 ~~A~~~-G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|++. ..++++||+. .++...........|...+
T Consensus 189 ~~~lr~~pd~i~vgEir--d~~~~~~~l~aa~tGh~v~ 224 (343)
T TIGR01420 189 RAALREDPDVILIGEMR--DLETVELALTAAETGHLVF 224 (343)
T ss_pred HHhhccCCCEEEEeCCC--CHHHHHHHHHHHHcCCcEE
Confidence 556655 4799999996 4444444344455666544
No 285
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00015 Score=62.03 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc------eEEE-Eec---cCCChhhhcceeEeecCeEE
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE------VEYI-CLS---RDTTEADIKQRREIVNGTAI 98 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p------~~~v-~~~---~~~~~~dL~g~~~~~~G~~~ 98 (162)
..-++|...+......+-+||.||.|+||+++|+.+|+.+.-. +-.+ +|. ..+. .|+.--.+.++|+.+
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~H-PD~~~i~p~~~~~~I 88 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNH-PDLHVIKPEKEGKSI 88 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCC-CCEEEEecCcCCCcC
Confidence 3455666666666666679999999999999999999876321 1100 000 0001 122110000112211
Q ss_pred Eecc--HHHHHh----hcC--cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 99 YYDQ--SAVRAA----IEG--RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 99 ~~~g--pl~~A~----~~G--~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
=+|. .+.+.+ ..| .|++||++++++.+..++|+..||+
T Consensus 89 ~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE 134 (319)
T PRK06090 89 TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE 134 (319)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC
Confidence 1111 011111 112 5999999999999999999999995
No 286
>KOG0482|consensus
Probab=97.85 E-value=1.1e-05 Score=72.92 Aligned_cols=94 Identities=17% Similarity=0.358 Sum_probs=66.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcce--eEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQR--REIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~--~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
|+||.|+||+-||.|.+++.++--+-+++ .....+-.-|... +.-..|..+.+-|+|+.| .+|++-|||+|++.
T Consensus 377 NicLmGDPGVAKSQLLkyi~rlapRgvYT--TGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLA--D~GICCIDEfDKM~ 452 (721)
T KOG0482|consen 377 NICLMGDPGVAKSQLLKYISRLAPRGVYT--TGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLA--DGGICCIDEFDKMD 452 (721)
T ss_pred eEEecCCCchhHHHHHHHHHhcCccccee--cCCCCCccccchhhhcCCCCCeeEeccceEEEc--cCceEeehhhhhhh
Confidence 69999999999999999999887665442 2222221112110 001235556666666544 78999999999999
Q ss_pred ccHHHHHHHhhcCCeEEEcC
Q psy4122 124 RNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~~ 143 (162)
..=-.+++.++|...+.|..
T Consensus 453 e~DRtAIHEVMEQQTISIaK 472 (721)
T KOG0482|consen 453 ESDRTAIHEVMEQQTISIAK 472 (721)
T ss_pred hhhhHHHHHHHHhhhhhhhh
Confidence 99999999999988887753
No 287
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.85 E-value=2.5e-05 Score=70.76 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-------eEEEEeccCCC---hhhhcceeEeec---
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-------VEYICLSRDTT---EADIKQRREIVN--- 94 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-------~~~v~~~~~~~---~~dL~g~~~~~~--- 94 (162)
......|+..+......+-.++.||-||||||+|+.+|+.++.. |-.+..+..++ ..|++- ++.
T Consensus 22 e~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviE---iDaASn 98 (515)
T COG2812 22 EHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIE---IDAASN 98 (515)
T ss_pred HHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchh---hhhhhc
Confidence 45667777777766666678999999999999999999998754 22111111111 223331 111
Q ss_pred -C---------eEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 95 -G---------TAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 95 -G---------~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
| ...|.+. -.+-.|++|||++..+....++|+.-||+-
T Consensus 99 ~gVddiR~i~e~v~y~P~-----~~ryKVyiIDEvHMLS~~afNALLKTLEEP 146 (515)
T COG2812 99 TGVDDIREIIEKVNYAPS-----EGRYKVYIIDEVHMLSKQAFNALLKTLEEP 146 (515)
T ss_pred cChHHHHHHHHHhccCCc-----cccceEEEEecHHhhhHHHHHHHhcccccC
Confidence 1 1112211 112369999999999999999999999963
No 288
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.84 E-value=1.7e-05 Score=61.14 Aligned_cols=25 Identities=28% Similarity=0.390 Sum_probs=23.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
++++|+||+||||+++.+|+.+|.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 6899999999999999999999865
No 289
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.83 E-value=1.7e-05 Score=60.30 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=29.2
Q ss_pred HHHHHHHHHhc--CCCCcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEeccC
Q psy4122 31 LSHLRWILQKD--NMSQDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSRD 80 (162)
Q Consensus 31 ~~~L~~i~~~~--~~g~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~~ 80 (162)
++.|...+... ..+..++++|++|+|||++++.+...+..+ +..+.+...
T Consensus 9 ~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp HHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 34444444221 234579999999999999999888666444 555666544
No 290
>KOG0481|consensus
Probab=97.83 E-value=2.7e-05 Score=70.59 Aligned_cols=93 Identities=13% Similarity=0.239 Sum_probs=66.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeec-C-eEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVN-G-TAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~-G-~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
||||.|+||+-||.|.+.+-... |.-.++-....+++-|..+..-.. + .|+.+-|+++. ..|||+-|||+|++.
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvs--PIaVYTSGKGSSAAGLTASV~RD~~tReFylEGGAMVL--ADgGVvCIDEFDKMr 441 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVS--PIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGGAMVL--ADGGVVCIDEFDKMR 441 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcC--ceEEEecCCCcccccceeeEEecCCcceEEEecceEEE--ecCCEEEeehhhccC
Confidence 79999999999999998776554 433344445556666654221111 2 34445454433 489999999999999
Q ss_pred ccHHHHHHHhhcCCeEEEc
Q psy4122 124 RNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~ 142 (162)
++=--++++.||...+.|.
T Consensus 442 e~DRVAIHEAMEQQTISIA 460 (729)
T KOG0481|consen 442 EDDRVAIHEAMEQQTISIA 460 (729)
T ss_pred chhhhHHHHHHHhhhHHHh
Confidence 9999999999998877664
No 291
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.82 E-value=2.6e-05 Score=67.76 Aligned_cols=94 Identities=12% Similarity=0.146 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCC-ceEEEEeccCCC-h-hhhcceeEeecCeEEEeccHHHHHhhcC-cEEEEeC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQR-EVEYICLSRDTT-E-ADIKQRREIVNGTAIYYDQSAVRAAIEG-RVLILEG 118 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~-p~~~v~~~~~~~-~-~dL~g~~~~~~G~~~~~~gpl~~A~~~G-~vlllDE 118 (162)
..+.++|+|++|||||.|...+.+.+.. .-.++.+|.-|- . ++|.. ..++..-. ..+++.+.++ .+|.+||
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~---~~~~~~~l--~~va~~l~~~~~lLcfDE 135 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQ---LRGQDDPL--PQVADELAKESRLLCFDE 135 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHH---HhCCCccH--HHHHHHHHhcCCEEEEee
Confidence 4567999999999999999999887755 334566663321 1 12211 11111100 1244555555 4889999
Q ss_pred CCC---CCccHHHHHHH-hhcCCeEEE
Q psy4122 119 IEK---AERNVLPVLNN-LLENREMHL 141 (162)
Q Consensus 119 Id~---a~~~v~~~L~~-lle~r~l~l 141 (162)
+.- ++.-.+..|.+ +++.|.+.+
T Consensus 136 F~V~DiaDAmil~rLf~~l~~~gvvlV 162 (362)
T PF03969_consen 136 FQVTDIADAMILKRLFEALFKRGVVLV 162 (362)
T ss_pred eeccchhHHHHHHHHHHHHHHCCCEEE
Confidence 955 44444554444 444444433
No 292
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.81 E-value=1.9e-05 Score=61.03 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=24.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.+++.|+||+|||++++.+|+.+|.+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~ 27 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPH 27 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 389999999999999999999998764
No 293
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.81 E-value=3.7e-05 Score=59.80 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
|.-|.++|++|+||||+++.+++.+ |+.+..+..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTRE 39 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5568999999999999999999887 444544433
No 294
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.81 E-value=1.9e-05 Score=62.22 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=24.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.+++.||||+||||+|+.+|+.++.|
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999999997776
No 295
>PHA02624 large T antigen; Provisional
Probab=97.81 E-value=0.00013 Score=67.42 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHH
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl 104 (162)
+.+......++.++...-.+.-++|+||||||||++++.+++.+|-....++.. ++-+... -||+
T Consensus 412 ~~~~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsP--t~ks~Fw-------------L~pl 476 (647)
T PHA02624 412 NFDDVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP--PDKLNFE-------------LGCA 476 (647)
T ss_pred hhHHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCC--cchhHHH-------------hhhh
Confidence 345677788888888776666789999999999999999999995443334322 2222211 1344
Q ss_pred HHHhhcCcEEEEeCCCCCCc-----------cHHHHHHHhhcCC-eEEE
Q psy4122 105 VRAAIEGRVLILEGIEKAER-----------NVLPVLNNLLENR-EMHL 141 (162)
Q Consensus 105 ~~A~~~G~vlllDEId~a~~-----------~v~~~L~~lle~r-~l~l 141 (162)
. ...+++||++-...- +=+.-|...||.. .+.|
T Consensus 477 ~----D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~l 521 (647)
T PHA02624 477 I----DQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNL 521 (647)
T ss_pred h----hceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCcccc
Confidence 3 335778887743222 1135677777766 5544
No 296
>PRK06762 hypothetical protein; Provisional
Probab=97.81 E-value=2.6e-05 Score=59.31 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYI 75 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v 75 (162)
.-+++.|+|||||||+|+.+++.++..+..+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i 33 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLV 33 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEe
Confidence 3578999999999999999999986554444
No 297
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.80 E-value=2.4e-05 Score=60.13 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
-++++|||||||||+++.+|+.+|.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~ 31 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 578899999999999999999998763
No 298
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.80 E-value=1.8e-05 Score=60.05 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
++|+||+||||||+++.+++.++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~ 25 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAK 25 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCe
Confidence 4789999999999999999999855
No 299
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.79 E-value=2.1e-05 Score=58.76 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
++|.|+||+||||+++.+++.++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~ 26 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAP 26 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCE
Confidence 6899999999999999999998765
No 300
>PRK04132 replication factor C small subunit; Provisional
Probab=97.79 E-value=5.2e-05 Score=72.20 Aligned_cols=84 Identities=10% Similarity=0.094 Sum_probs=54.2
Q ss_pred cEEEEc--CCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeC
Q psy4122 46 DVFLIG--KPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEG 118 (162)
Q Consensus 46 ~vlL~G--ppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDE 118 (162)
+-+..| |.+.||||+|.++|+.+ +.++..++.+.+...+++... ++.-. . ..|+. -..-.+++|||
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~i--Ik~~a-~--~~~~~--~~~~KVvIIDE 638 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREK--VKEFA-R--TKPIG--GASFKIIFLDE 638 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHH--HHHHH-h--cCCcC--CCCCEEEEEEC
Confidence 346668 99999999999999887 334555555533344444320 00000 0 00100 00125999999
Q ss_pred CCCCCccHHHHHHHhhcC
Q psy4122 119 IEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 119 Id~a~~~v~~~L~~lle~ 136 (162)
+|+++++.+++|+..||.
T Consensus 639 aD~Lt~~AQnALLk~lEe 656 (846)
T PRK04132 639 ADALTQDAQQALRRTMEM 656 (846)
T ss_pred cccCCHHHHHHHHHHhhC
Confidence 999999999999999995
No 301
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00022 Score=61.69 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=23.7
Q ss_pred cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 112 RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 112 ~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.|+|||+.++++.+..++|+..||+
T Consensus 134 kV~iI~~ae~m~~~AaNaLLKtLEE 158 (342)
T PRK06964 134 RVVVLYPAEALNVAAANALLKTLEE 158 (342)
T ss_pred eEEEEechhhcCHHHHHHHHHHhcC
Confidence 5999999999999999999999994
No 302
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.78 E-value=2.2e-05 Score=61.25 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
|+.+.|+||+||||||+++.++...+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 6789999999999999999999887754
No 303
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.77 E-value=2.7e-05 Score=60.45 Aligned_cols=30 Identities=17% Similarity=0.349 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++++|+|++|+|||++++.+|+.+|.++.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~v 33 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 357999999999999999999999998853
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.77 E-value=0.00031 Score=52.85 Aligned_cols=90 Identities=11% Similarity=0.124 Sum_probs=54.1
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcc-eeEeecCeEEEeccHHHHHh-hcCcEEEEeC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQ-RREIVNGTAIYYDQSAVRAA-IEGRVLILEG 118 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g-~~~~~~G~~~~~~gpl~~A~-~~G~vlllDE 118 (162)
...|+.+.|.||.|+|||+|.+.++......-=.+.++.. .-++ .+.+.+|.. +.-.+++|+ .+..++++||
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~lS~G~~--~rv~laral~~~p~illlDE 96 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQLSGGEK--MRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEccCCHHHH--HHHHHHHHHhcCCCEEEEeC
Confidence 4468899999999999999999998765322112222211 0011 001222221 111356665 5568999999
Q ss_pred CC-CCCccHHHHHHHhhcC
Q psy4122 119 IE-KAERNVLPVLNNLLEN 136 (162)
Q Consensus 119 Id-~a~~~v~~~L~~lle~ 136 (162)
-. ..+++....+..++.+
T Consensus 97 P~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 97 PTNHLDLESIEALEEALKE 115 (144)
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 94 4677777777777753
No 305
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.77 E-value=5.3e-05 Score=59.12 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=44.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcce----eEeecCeEEEecc--HHHHHh----hcCcEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQR----REIVNGTAIYYDQ--SAVRAA----IEGRVLI 115 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~----~~~~~G~~~~~~g--pl~~A~----~~G~vll 115 (162)
.+++.|+||+|||++|+.++...+.++.++.... ....+...+ ..-++..+.-.+. .+.+++ ..+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEEE
Confidence 5899999999999999999998887766554432 222232211 1112222221222 344444 3367899
Q ss_pred EeCCC
Q psy4122 116 LEGIE 120 (162)
Q Consensus 116 lDEId 120 (162)
+|-+.
T Consensus 82 ID~Lt 86 (170)
T PRK05800 82 VDCLT 86 (170)
T ss_pred ehhHH
Confidence 99873
No 306
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.77 E-value=2.3e-05 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l 68 (162)
|+|.|+||+||||+|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 307
>PLN02165 adenylate isopentenyltransferase
Probab=97.76 E-value=2.1e-05 Score=67.69 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=26.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.++.++|+||+|||||+|+..+|..++.+
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~e 70 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSE 70 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCc
Confidence 45579999999999999999999999865
No 308
>PRK02496 adk adenylate kinase; Provisional
Probab=97.75 E-value=2.9e-05 Score=60.18 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=25.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+++.||||||||++++.+|+.+|.+..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i 30 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHI 30 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 5899999999999999999999987643
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=6.2e-05 Score=66.06 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=51.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh-------CCceEEEEeccCC--ChhhhcceeEeecCeEEE--eccHHHHH---hhc
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT-------QREVEYICLSRDT--TEADIKQRREIVNGTAIY--YDQSAVRA---AIE 110 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l-------g~p~~~v~~~~~~--~~~dL~g~~~~~~G~~~~--~~gpl~~A---~~~ 110 (162)
..++|+||+|+||||.+..+|+.+ |..+..+.+...- ....|...-.+-+=.+.- ....+.++ +..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~ 254 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKD 254 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCC
Confidence 468999999999999999999754 3455555553210 111221100000101111 11223332 244
Q ss_pred CcEEEEeCCCCCCccH--HHHHHHhhc
Q psy4122 111 GRVLILEGIEKAERNV--LPVLNNLLE 135 (162)
Q Consensus 111 G~vlllDEId~a~~~v--~~~L~~lle 135 (162)
-.++++|+..+.+.+. +..|..+++
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 5799999999988763 456666666
No 310
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.74 E-value=5.4e-05 Score=64.11 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhc-------CCCCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 26 LTQDWLSHLRWILQKD-------NMSQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~-------~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
++|+-.+.+..|++.+ ..+.+++|+|.+|||||++++.+|+.+|.++.
T Consensus 108 l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i 162 (309)
T PRK08154 108 ASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFV 162 (309)
T ss_pred CCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 5666666666666642 24557999999999999999999999999966
No 311
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.74 E-value=9.9e-05 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.+.|+||+|+|||+|++.+++.....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999876544
No 312
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00026 Score=59.98 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe-------ccCCChhhhcceeEeecCe--EEEec
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL-------SRDTTEADIKQRREIVNGT--AIYYD 101 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~-------~~~~~~~dL~g~~~~~~G~--~~~~~ 101 (162)
-+.|+..+......+..|++||.|+||+.+|..+|..+-..-..-.| |+| +.-- ..+|. ..-.+
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-----~~~i--~p~~~~~~I~id 78 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-----IHEF--SPQGKGRLHSIE 78 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-----EEEE--ecCCCCCcCcHH
Confidence 35566666666666678899999999999999999876432100011 222 1100 01111 11111
Q ss_pred cH--HHHHh----hcC--cEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QS--AVRAA----IEG--RVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gp--l~~A~----~~G--~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.. +.+.+ -+| .|++||++++++.+..++|+..||+
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE 121 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED 121 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc
Confidence 11 11111 122 5899999999999999999999995
No 313
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.73 E-value=0.00019 Score=67.42 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEeccCCChhhhc----cee--EeecCe
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSRDTTEADIK----QRR--EIVNGT 96 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~~~~~~dL~----g~~--~~~~G~ 96 (162)
+++.-.+.++.+. ..+.++|.|+||||||++++.+.+.+... ...+-+.+.-.+++-+ |.. ++. .-
T Consensus 324 l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih-~l 398 (720)
T TIGR01448 324 LSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIH-RL 398 (720)
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHH-HH
Confidence 4444444444443 24578999999999999999887655321 2222222221122211 110 000 00
Q ss_pred EEEeccHH----HHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCC-eEEE
Q psy4122 97 AIYYDQSA----VRAAIEGRVLILEGIEKAERNVLPVLNNLLENR-EMHL 141 (162)
Q Consensus 97 ~~~~~gpl----~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r-~l~l 141 (162)
..|..+.. ........+|++||...++......|.+.+..+ ++.+
T Consensus 399 L~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 399 LGYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALPDHARLLL 448 (720)
T ss_pred hhccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhCCCCCEEEE
Confidence 00111000 011134579999999999999888888877643 5555
No 314
>KOG0744|consensus
Probab=97.73 E-value=2e-05 Score=67.99 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
-+||.||||||||+|++++|..+.
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhhe
Confidence 379999999999999999998774
No 315
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.72 E-value=0.0002 Score=61.41 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC--CceEEEEeccCCChhhhcc----eeEee-cCeEE
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ--REVEYICLSRDTTEADIKQ----RREIV-NGTAI 98 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg--~p~~~v~~~~~~~~~dL~g----~~~~~-~G~~~ 98 (162)
+++...+.|+.++. .++++++.|+||+||||+.++++.... .|-.++..-+|.. +|.. ...+. .+...
T Consensus 129 ~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~--El~~~~~n~v~l~~~~~~~ 203 (323)
T PRK13833 129 MTEAQASVIRSAID---SRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTA--EIQCAAENAVALHTSDTVD 203 (323)
T ss_pred CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc--ccccCCCCEEEeccCCCcC
Confidence 34555566666555 467999999999999999999987763 2223332223322 2221 00111 12122
Q ss_pred EeccHHHHHhhcC-cEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 99 YYDQSAVRAAIEG-RVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 99 ~~~gpl~~A~~~G-~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
+. ..+..|+|.. .++++.||.- ++....|.. +..|
T Consensus 204 ~~-~lv~~aLR~~PD~IivGEiRg--~ea~~~l~a-~~tG 239 (323)
T PRK13833 204 MA-RLLKSTMRLRPDRIIVGEVRD--GAALTLLKA-WNTG 239 (323)
T ss_pred HH-HHHHHHhCCCCCEEEEeecCC--HHHHHHHHH-HcCC
Confidence 21 1223455554 7999999974 355555444 4444
No 316
>PRK14528 adenylate kinase; Provisional
Probab=97.72 E-value=3.4e-05 Score=60.54 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=25.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+.+++.||||+|||++++.+|+.+|.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3689999999999999999999999874
No 317
>KOG0740|consensus
Probab=97.72 E-value=2.5e-05 Score=69.23 Aligned_cols=63 Identities=19% Similarity=0.396 Sum_probs=42.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh------hcCcEEEEeCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA------IEGRVLILEGI 119 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~------~~G~vlllDEI 119 (162)
.+||.||||+|||.|++++|...+.-+ +++ +++.|...+. |.. .-++.|+ ...+|+++|||
T Consensus 188 glLLfGPpgtGKtmL~~aiAsE~~atf--f~i----SassLtsK~~---Ge~----eK~vralf~vAr~~qPsvifidEi 254 (428)
T KOG0740|consen 188 GLLLFGPPGTGKTMLAKAIATESGATF--FNI----SASSLTSKYV---GES----EKLVRALFKVARSLQPSVIFIDEI 254 (428)
T ss_pred hhheecCCCCchHHHHHHHHhhhcceE--eec----cHHHhhhhcc---ChH----HHHHHHHHHHHHhcCCeEEEechh
Confidence 589999999999999999999888654 333 3455543211 110 1344443 35689999999
Q ss_pred CC
Q psy4122 120 EK 121 (162)
Q Consensus 120 d~ 121 (162)
|+
T Consensus 255 ds 256 (428)
T KOG0740|consen 255 DS 256 (428)
T ss_pred HH
Confidence 75
No 318
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.71 E-value=0.00026 Score=54.48 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=53.5
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEecc-C---CChhhhcceeEee--cCe----EEE---------e
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSR-D---TTEADIKQRREIV--NGT----AIY---------Y 100 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~-~---~~~~dL~g~~~~~--~G~----~~~---------~ 100 (162)
.+..|+.+.|.||.|+|||+|.+.++......-=.+.++. + ....++....... +.. +.+ +
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHH
Confidence 3446888999999999999999999987642211233331 1 1122221111111 100 111 0
Q ss_pred ccHHHHHh-hcCcEEEEeCCC-CCCccHHHHHHHhhc
Q psy4122 101 DQSAVRAA-IEGRVLILEGIE-KAERNVLPVLNNLLE 135 (162)
Q Consensus 101 ~gpl~~A~-~~G~vlllDEId-~a~~~v~~~L~~lle 135 (162)
.-.+++|+ .+..++++||-. ..++.....+.+++.
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~ 140 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHH
Confidence 11244554 456899999994 466666666666654
No 319
>PLN02199 shikimate kinase
Probab=97.71 E-value=9.3e-05 Score=62.97 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
++....-+...+.+.+++|+|.+|||||++++.+|+.+|+++.
T Consensus 89 Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fI 131 (303)
T PLN02199 89 LKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFF 131 (303)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4444444455666889999999999999999999999999975
No 320
>KOG0990|consensus
Probab=97.71 E-value=3.2e-06 Score=72.45 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee----Eee-----cCeEE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR----EIV-----NGTAI 98 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~----~~~-----~G~~~ 98 (162)
....+.+.+........ |+|++||||+|||+.+-..|..+-.|.-+-++...+..+|=.|.- .+. .+-..
T Consensus 47 ~ei~st~~~~~~~~~lP-h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~ 125 (360)
T KOG0990|consen 47 EPIWSTENRYSGMPGLP-HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTT 125 (360)
T ss_pred CchhhHHHHhccCCCCC-cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhcccee
Confidence 34444555553333333 899999999999999999998876542221111111122212100 000 01011
Q ss_pred EeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCC-----eEEEcC-CcEEecCcchH
Q psy4122 99 YYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENR-----EMHLED-GRFLVSASTYD 154 (162)
Q Consensus 99 ~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r-----~l~l~~-g~~i~~~~~f~ 154 (162)
|.- -..=..++|||.|.+..+.+++|.+++++- -..+.+ -..++|+-.++
T Consensus 126 fst------~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsR 181 (360)
T KOG0990|consen 126 YST------HAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSR 181 (360)
T ss_pred ccc------cCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcc
Confidence 110 001158999999999999999999999843 223333 44555555444
No 321
>PF13245 AAA_19: Part of AAA domain
Probab=97.71 E-value=5.4e-05 Score=51.69 Aligned_cols=25 Identities=32% Similarity=0.531 Sum_probs=17.9
Q ss_pred CCcEEE-EcCCCchHH-HHHHHHHHHh
Q psy4122 44 SQDVFL-IGKPGSLRR-SLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL-~GppG~GKT-~La~~lA~~l 68 (162)
+.++++ .|||||||| +++..+++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345554 999999999 5555666665
No 322
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.71 E-value=0.00038 Score=58.89 Aligned_cols=90 Identities=13% Similarity=0.175 Sum_probs=49.8
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcc--eeEee-----cCeEEEecc-HHHHHhhc-Cc
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQ--RREIV-----NGTAIYYDQ-SAVRAAIE-GR 112 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g--~~~~~-----~G~~~~~~g-pl~~A~~~-G~ 112 (162)
..++++++.||+|+||||+++.++..+......+.+ ++...-.+.. ...+. .+....... .+..+++. ..
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i-ed~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI-EDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE-cCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 357899999999999999999999877543333444 2211111111 00110 111011111 22334544 47
Q ss_pred EEEEeCCCCCCccHHHHHHHhh
Q psy4122 113 VLILEGIEKAERNVLPVLNNLL 134 (162)
Q Consensus 113 vlllDEId~a~~~v~~~L~~ll 134 (162)
++++||+-- .++.+.|..+.
T Consensus 221 ~ii~gE~r~--~e~~~~l~a~~ 240 (308)
T TIGR02788 221 RIILGELRG--DEAFDFIRAVN 240 (308)
T ss_pred eEEEeccCC--HHHHHHHHHHh
Confidence 999999984 55666555443
No 323
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.69 E-value=6.7e-05 Score=66.27 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=29.6
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
++....-.|+.++++||||||||+|++.+++.....
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 455556678899999999999999999999876443
No 324
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0002 Score=67.59 Aligned_cols=89 Identities=12% Similarity=0.218 Sum_probs=53.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC---Cce-----EEEEeccCCChhhhcceeEeecCeEE--Eecc--HHHHHhhc--C
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ---REV-----EYICLSRDTTEADIKQRREIVNGTAI--YYDQ--SAVRAAIE--G 111 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg---~p~-----~~v~~~~~~~~~dL~g~~~~~~G~~~--~~~g--pl~~A~~~--G 111 (162)
|-+|+|+||+|||.+++-+|...- .|- ..+++ +...|+. +.+.. |++. .+.+.+++ .
T Consensus 193 NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL----D~g~LvA-----GakyRGeFEeRlk~vl~ev~~~~~ 263 (786)
T COG0542 193 NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL----DLGSLVA-----GAKYRGEFEERLKAVLKEVEKSKN 263 (786)
T ss_pred CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe----cHHHHhc-----cccccCcHHHHHHHHHHHHhcCCC
Confidence 789999999999999999996652 111 11111 1222321 11111 1111 12222322 3
Q ss_pred cEEEEeCCCC---C------CccHHHHHHHhhcCCeEEEcC
Q psy4122 112 RVLILEGIEK---A------ERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 112 ~vlllDEId~---a------~~~v~~~L~~lle~r~l~l~~ 143 (162)
-+|||||||. | .-|..+.|.+.|.+|++...+
T Consensus 264 vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IG 304 (786)
T COG0542 264 VILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIG 304 (786)
T ss_pred eEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEE
Confidence 5789999976 1 245899999999999996643
No 325
>PRK13948 shikimate kinase; Provisional
Probab=97.68 E-value=4.7e-05 Score=60.17 Aligned_cols=30 Identities=13% Similarity=-0.021 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..+++|+|.+|||||++++.+|+.+|+++.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~i 39 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFI 39 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 457999999999999999999999999865
No 326
>PRK04182 cytidylate kinase; Provisional
Probab=97.68 E-value=4.4e-05 Score=58.13 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=25.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|.|++|||||++++.+|+.+|.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~i 29 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHV 29 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEe
Confidence 4789999999999999999999998854
No 327
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.67 E-value=7.4e-05 Score=57.30 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=26.5
Q ss_pred EEEEcCCCchHHHHHHHHHH---HhCCceEEEEec
Q psy4122 47 VFLIGKPGSLRRSLAMSYLE---LTQREVEYICLS 78 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~ 78 (162)
+++.||||||||+++.+++. ..|.++.++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 68999999999999999875 347788888763
No 328
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.67 E-value=4.5e-05 Score=60.65 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=24.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+++.||||+|||++++.+|+.+|.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i 28 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI 28 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee
Confidence 789999999999999999999987643
No 329
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.67 E-value=4.3e-05 Score=62.39 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=25.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..++|.||||+||||+++.+|+.+|.+..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~i 35 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHI 35 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 35899999999999999999999998743
No 330
>KOG0058|consensus
Probab=97.67 E-value=0.00012 Score=68.32 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..|+++--.+..|+.+.|+||.|.||||+|..+-+..
T Consensus 482 ~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 482 PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3455555566789999999999999999998887654
No 331
>PRK05973 replicative DNA helicase; Provisional
Probab=97.66 E-value=9.5e-05 Score=60.87 Aligned_cols=51 Identities=20% Similarity=0.271 Sum_probs=38.1
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhcc
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIKQ 88 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~g 88 (162)
++.-.+..|.-+++.|+||+|||+++.++|.. .|.++.++++ +++.+++..
T Consensus 56 ~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl--Ees~~~i~~ 109 (237)
T PRK05973 56 ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL--EYTEQDVRD 109 (237)
T ss_pred HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE--eCCHHHHHH
Confidence 34445666777899999999999999998753 3888888877 444666653
No 332
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.66 E-value=0.00031 Score=60.08 Aligned_cols=103 Identities=11% Similarity=0.082 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcc--eeEe-ecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQ--RREI-VNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g--~~~~-~~G~~~~~ 100 (162)
++...+.|+..+. .++++++.|+||+||||++++++... ......+.+ +++..-.+.. ...+ .+....|.
T Consensus 134 ~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtI-Ed~~El~~~~~~~v~~~~~~~~~~~ 209 (319)
T PRK13894 134 TAAQREAIIAAVR---AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFII-EDTGEIQCAAENYVQYHTSIDVNMT 209 (319)
T ss_pred CHHHHHHHHHHHH---cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEE-cCCCccccCCCCEEEEecCCCCCHH
Confidence 3444455554443 46799999999999999999998764 222222322 2221111111 0011 11222222
Q ss_pred ccHHHHHhhcC-cEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 101 DQSAVRAAIEG-RVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 101 ~gpl~~A~~~G-~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
+ .+..|+|.. .++++.|+.-. +....| ..+..|
T Consensus 210 ~-ll~~aLR~~PD~IivGEiR~~--Ea~~~l-~A~~tG 243 (319)
T PRK13894 210 A-LLKTTLRMRPDRILVGEVRGP--EALDLL-MAWNTG 243 (319)
T ss_pred H-HHHHHhcCCCCEEEEeccCCH--HHHHHH-HHHHcC
Confidence 1 344456554 79999999743 455544 444444
No 333
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.66 E-value=6.9e-05 Score=58.41 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l 68 (162)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777666554
No 334
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.66 E-value=0.00022 Score=56.97 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHH---h-CCceEEEEeccCCChhhhc
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLEL---T-QREVEYICLSRDTTEADIK 87 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~---l-g~p~~~v~~~~~~~~~dL~ 87 (162)
..|..+++.||||+|||+++.+++.. . |.++.++++. .++++++
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e--e~~~~l~ 64 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE--EPPEELI 64 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS--S-HHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec--CCHHHHH
Confidence 35667999999999999999998743 3 8999888884 3455554
No 335
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.65 E-value=0.00028 Score=54.30 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=25.6
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.+..|+.+.|+||.|+|||+|.+.+|....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344688999999999999999999997653
No 336
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.64 E-value=0.00015 Score=57.16 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=52.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcc----eeEeecCeEEEec-----cHH----------
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQ----RREIVNGTAIYYD-----QSA---------- 104 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g----~~~~~~G~~~~~~-----gpl---------- 104 (162)
|+-|+|-|++.+||||||+.+.+.+..|...+.+. +++. .....+....|.. ++.
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D------~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVD------TFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHA 74 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHH------HHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecC------hHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHH
Confidence 35689999999999999999999999886555543 2221 0011222333320 232
Q ss_pred -HHHh-hcCcEEEEeCCCCCCccHHHHHHHhhcCCeEE
Q psy4122 105 -VRAA-IEGRVLILEGIEKAERNVLPVLNNLLENREMH 140 (162)
Q Consensus 105 -~~A~-~~G~vlllDEId~a~~~v~~~L~~lle~r~l~ 140 (162)
+.|+ +.|.-+|+|++-.-+....+.+..+|+...+.
T Consensus 75 ~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl 112 (174)
T PF07931_consen 75 AIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVL 112 (174)
T ss_dssp HHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EE
T ss_pred HHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceE
Confidence 1222 46778999988665555677777888766543
No 337
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.64 E-value=9.9e-05 Score=49.05 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l 68 (162)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 338
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.64 E-value=4.8e-05 Score=57.83 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=20.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
|.|+|++|||||||++.+++. |.++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 87743
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.64 E-value=9.4e-05 Score=55.89 Aligned_cols=93 Identities=17% Similarity=0.197 Sum_probs=54.2
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccC-CC---hhhhcc----eeEeecCeEEEeccHHHHHh-hcC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRD-TT---EADIKQ----RREIVNGTAIYYDQSAVRAA-IEG 111 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~-~~---~~dL~g----~~~~~~G~~~~~~gpl~~A~-~~G 111 (162)
+..|+.+.|+|+.|+|||+|.+.++..+...--.+.++.. .. ..++.. ...+.+|.. +.-.+.+|+ ...
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~--~r~~l~~~l~~~~ 99 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQR--QRVALARALLLNP 99 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHH--HHHHHHHHHhcCC
Confidence 3457889999999999999999999877543334444421 11 111111 111233321 111345555 456
Q ss_pred cEEEEeCCCC-CCccHHHHHHHhhc
Q psy4122 112 RVLILEGIEK-AERNVLPVLNNLLE 135 (162)
Q Consensus 112 ~vlllDEId~-a~~~v~~~L~~lle 135 (162)
.++++||... .++.....+..++.
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~ 124 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLR 124 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 8999999954 55555555555554
No 340
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.63 E-value=0.00011 Score=56.40 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=53.4
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEecc-CC---Chhhhc----c-eeEeecCeEEEeccHHHHHhh-
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSR-DT---TEADIK----Q-RREIVNGTAIYYDQSAVRAAI- 109 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~-~~---~~~dL~----g-~~~~~~G~~~~~~gpl~~A~~- 109 (162)
.+..|+.+.|.||.|+|||+|.+.++......-=.+.+.. +. +..+.. + ...+.+|.. +.-.+++|+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~--qrl~laral~~ 99 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGER--QMVEIARALAR 99 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHH--HHHHHHHHHhc
Confidence 3446889999999999999999999976532211233321 11 111111 1 011222321 1113566664
Q ss_pred cCcEEEEeCCC-CCCccHHHHHHHhhc
Q psy4122 110 EGRVLILEGIE-KAERNVLPVLNNLLE 135 (162)
Q Consensus 110 ~G~vlllDEId-~a~~~v~~~L~~lle 135 (162)
+..++++||-. ..+++....+..++.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIR 126 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 45899999994 466665555555553
No 341
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.63 E-value=0.00011 Score=58.97 Aligned_cols=49 Identities=10% Similarity=0.200 Sum_probs=36.1
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEeccCCChhhh
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICLSRDTTEADI 86 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~~~~~~~dL 86 (162)
.++..+..|.-++|.|+||+|||+++.+++... |.++.++++ +++..++
T Consensus 5 ~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~--E~~~~~~ 57 (242)
T cd00984 5 NLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL--EMSKEQL 57 (242)
T ss_pred hhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC--CCCHHHH
Confidence 444556678789999999999999999887432 788877776 3344443
No 342
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.62 E-value=0.00039 Score=65.33 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=59.6
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec-cCCChhhhcc----ee--Eeec----C-----e
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS-RDTTEADIKQ----RR--EIVN----G-----T 96 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~-~~~~~~dL~g----~~--~~~~----G-----~ 96 (162)
.|...+.......-+++.||+|.|||+++.++++..+ ++..+++. .|.++..+.. .. ...+ . .
T Consensus 21 rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~ 99 (903)
T PRK04841 21 RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQK 99 (903)
T ss_pred HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhcc
Confidence 3333444333344678899999999999999998777 78788886 4445443321 00 0000 0 0
Q ss_pred EEEec-c----HHHHHhh---cCcEEEEeCCCCCCcc-HHHHHHHhhcC
Q psy4122 97 AIYYD-Q----SAVRAAI---EGRVLILEGIEKAERN-VLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~-g----pl~~A~~---~G~vlllDEId~a~~~-v~~~L~~lle~ 136 (162)
..+.+ . .++.++. ..-+||||+++.+... +...|..+++.
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~ 148 (903)
T PRK04841 100 RQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH 148 (903)
T ss_pred CCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh
Confidence 00000 0 1222222 2357899999998744 45577777763
No 343
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.62 E-value=0.00045 Score=62.24 Aligned_cols=109 Identities=11% Similarity=0.184 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce-EEEEeccCCChhhhcc--eeEeecCe--EEEe
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV-EYICLSRDTTEADIKQ--RREIVNGT--AIYY 100 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~-~~v~~~~~~~~~dL~g--~~~~~~G~--~~~~ 100 (162)
+++..++.+++++..- +.-++++||+|+||||+...+...++.+- ..+++ +|.-.-.+-+ +..+ +.+ ..|.
T Consensus 226 ~~~~~~~~l~~~~~~~--~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTi-EDpvE~~~~~~~q~~v-~~~~g~~f~ 301 (486)
T TIGR02533 226 MSPELLSRFERLIRRP--HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV-EDPVEYQIEGIGQIQV-NPKIGLTFA 301 (486)
T ss_pred CCHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEE-cCCeeeecCCCceEEE-ccccCccHH
Confidence 4788888888877532 22588999999999999997776665442 23333 2211111112 1111 211 1222
Q ss_pred ccHHHHHhhcC-cEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 101 DQSAVRAAIEG-RVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 101 ~gpl~~A~~~G-~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..+-.++|+. .++++.||.- ++...........|.+++
T Consensus 302 -~~lr~~LR~dPDvI~vGEiRd--~eta~~a~~aa~tGHlvl 340 (486)
T TIGR02533 302 -AGLRAILRQDPDIIMVGEIRD--LETAQIAIQASLTGHLVL 340 (486)
T ss_pred -HHHHHHHhcCCCEEEEeCCCC--HHHHHHHHHHHHhCCcEE
Confidence 1233445554 7999999963 334444444555777655
No 344
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00018 Score=59.84 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=52.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh--C----CceEEEEeccCCCh-hhhcceeEeecCe--EEEeccH----HHHHhhc--
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT--Q----REVEYICLSRDTTE-ADIKQRREIVNGT--AIYYDQS----AVRAAIE-- 110 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l--g----~p~~~v~~~~~~~~-~dL~g~~~~~~G~--~~~~~gp----l~~A~~~-- 110 (162)
|.|+.|||||||||+.+-+|+.+ | .|.....+.+..+. .-+.|.+...-|. -+..+.| +..|++.
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 69999999999999999999876 3 34444444322221 1233333322121 1222223 2334433
Q ss_pred CcEEEEeCCCCCCccHHHHHHHhhcCCe
Q psy4122 111 GRVLILEGIEKAERNVLPVLNNLLENRE 138 (162)
Q Consensus 111 G~vlllDEId~a~~~v~~~L~~lle~r~ 138 (162)
.-|+++|||-+... ..+++..++.|.
T Consensus 219 PEViIvDEIGt~~d--~~A~~ta~~~GV 244 (308)
T COG3854 219 PEVIIVDEIGTEED--ALAILTALHAGV 244 (308)
T ss_pred CcEEEEeccccHHH--HHHHHHHHhcCc
Confidence 56999999987433 344556667664
No 345
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=5.4e-05 Score=59.43 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=25.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEY 74 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~ 74 (162)
+-+.|||||||||+++.+|+.+|.++..
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5678999999999999999999999753
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.61 E-value=0.00018 Score=55.31 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=55.3
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec---------cC-----CChhhhcc---eeEeecCeEEEecc
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS---------RD-----TTEADIKQ---RREIVNGTAIYYDQ 102 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~---------~~-----~~~~dL~g---~~~~~~G~~~~~~g 102 (162)
.+..|+.+.++||.|+|||||++.++......-=.+.+. .+ .+..+-+. ...+.+|... .=
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~--rv 100 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQ--RL 100 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHH--HH
Confidence 445688999999999999999999997753211011111 11 11111110 0011222210 11
Q ss_pred HHHHHh-hcCcEEEEeCCC-CCCccHHHHHHHhhcC
Q psy4122 103 SAVRAA-IEGRVLILEGIE-KAERNVLPVLNNLLEN 136 (162)
Q Consensus 103 pl~~A~-~~G~vlllDEId-~a~~~v~~~L~~lle~ 136 (162)
.+++|+ .+..++++||-. ..+++....+..++.+
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 345565 456899999994 4777777778777765
No 347
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.61 E-value=0.0002 Score=55.85 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=44.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCCh--hhhcc-eeEeecCeEEEeccH--HHHHhh---cCcEEEEeC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTE--ADIKQ-RREIVNGTAIYYDQS--AVRAAI---EGRVLILEG 118 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~--~dL~g-~~~~~~G~~~~~~gp--l~~A~~---~G~vlllDE 118 (162)
+++.|++|+|||++|.+++...+.++.++......+. .+-+. ....++..+...+.| +.+++. ..++++||-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 6899999999999999999887877777755433221 11111 111123333333333 445552 346899998
Q ss_pred C
Q psy4122 119 I 119 (162)
Q Consensus 119 I 119 (162)
+
T Consensus 82 l 82 (169)
T cd00544 82 L 82 (169)
T ss_pred H
Confidence 7
No 348
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.60 E-value=0.00011 Score=60.13 Aligned_cols=52 Identities=21% Similarity=0.297 Sum_probs=38.7
Q ss_pred HHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhc
Q psy4122 34 LRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 34 L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~ 87 (162)
|-.++.. +..|..++++|+||||||.++.+++.. .|.|+.+++..++ +.++.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~--~~~l~ 67 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES--PEELL 67 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC--HHHHH
Confidence 3344443 446788999999999999999999843 3889999988644 55554
No 349
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.59 E-value=0.00052 Score=51.28 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHH-HHHHHHHHh
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRS-LAMSYLELT 68 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~-La~~lA~~l 68 (162)
+.+.=.+.+..+.... +++++.||+|+|||. ++..+.+..
T Consensus 9 ~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 9 LRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHh
Confidence 4444444555554321 799999999999999 444444443
No 350
>PRK14527 adenylate kinase; Provisional
Probab=97.59 E-value=7.2e-05 Score=58.53 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.++-+++.||||+|||++++.+|+.+|.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKK 34 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 355789999999999999999999998763
No 351
>PRK06696 uridine kinase; Validated
Probab=97.58 E-value=0.00021 Score=57.46 Aligned_cols=31 Identities=23% Similarity=0.096 Sum_probs=24.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYIC 76 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~ 76 (162)
-|.+.|++|+||||+|+.+++.+ |.++..++
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~ 57 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRAS 57 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 46777999999999999999988 55554433
No 352
>PRK08233 hypothetical protein; Provisional
Probab=97.57 E-value=6.1e-05 Score=57.52 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=22.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
.-+.+.|+||+||||+|+.+++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 35778899999999999999998863
No 353
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.56 E-value=0.0001 Score=67.77 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=36.6
Q ss_pred cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC-------CcEEecCcc---hHhhhh
Q psy4122 110 EGRVLILEGIEKAERNVLPVLNNLLENREMHLED-------GRFLVSAST---YDKLLQ 158 (162)
Q Consensus 110 ~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~-------g~~i~~~~~---f~~~~~ 158 (162)
+.|++=+=|+-+++.+++-.|+.+.+++.+..++ ...|++|.| |++|+.
T Consensus 255 NrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E~~~F~~ 313 (644)
T PRK15455 255 NQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESEWQTFRN 313 (644)
T ss_pred cCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHHHHHHhc
Confidence 4466655599999999999999999999885543 357888865 455544
No 354
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.56 E-value=7.6e-05 Score=59.52 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=25.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+++.||||+|||++++.+|+.+|.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i 29 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI 29 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999997643
No 355
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.56 E-value=6.6e-05 Score=58.98 Aligned_cols=92 Identities=7% Similarity=-0.066 Sum_probs=50.0
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEG 118 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDE 118 (162)
....|+.+.|+||.|+|||||.+.++......-=.+.++.. ...-+.....+.+|.-. .-.+++|+ .+..++++||
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-~i~~~~q~~~LSgGq~q--rv~laral~~~p~lllLDE 97 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI-TPVYKPQYIDLSGGELQ--RVAIAAALLRNATFYLFDE 97 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE-EEEEEcccCCCCHHHHH--HHHHHHHHhcCCCEEEEEC
Confidence 34468899999999999999999999775322112222210 00000000002222210 11345565 4568999999
Q ss_pred CC-CCCccHHHHHHHhh
Q psy4122 119 IE-KAERNVLPVLNNLL 134 (162)
Q Consensus 119 Id-~a~~~v~~~L~~ll 134 (162)
-. ..++.....+..++
T Consensus 98 Pts~LD~~~~~~l~~~l 114 (177)
T cd03222 98 PSAYLDIEQRLNAARAI 114 (177)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 94 45555544444444
No 356
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00053 Score=52.69 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=54.2
Q ss_pred HhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEecc-CC---ChhhhcceeEe--ecC----eEEEec----c--
Q psy4122 39 QKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSR-DT---TEADIKQRREI--VNG----TAIYYD----Q-- 102 (162)
Q Consensus 39 ~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~-~~---~~~dL~g~~~~--~~G----~~~~~~----g-- 102 (162)
-.+..|+.+.|.||.|+|||+|.+.++......-=.+.++. +. ....+.....+ .+. .+.+++ |
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 34557889999999999999999999987642211233332 11 11111110111 010 011100 1
Q ss_pred ---HHHHHh-hcCcEEEEeCCC-CCCccHHHHHHHhhc
Q psy4122 103 ---SAVRAA-IEGRVLILEGIE-KAERNVLPVLNNLLE 135 (162)
Q Consensus 103 ---pl~~A~-~~G~vlllDEId-~a~~~v~~~L~~lle 135 (162)
.+++|+ .+..++++||-. -.++.....+..++.
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~ 140 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALR 140 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 245555 466899999984 466666666666665
No 357
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.55 E-value=0.00026 Score=59.23 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
+++++.||+||||||+.+.++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 58999999999999999999988754
No 358
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.55 E-value=8.6e-05 Score=56.14 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+.+.|++|+|||++++.+|+.+|.|+.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~ 29 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLI 29 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 789999999999999999999998843
No 359
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.55 E-value=0.00018 Score=54.09 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCCcEE--EEcCCCchHHHHHHHHHHHh
Q psy4122 28 QDWLSHLRWILQKDNMSQDVF--LIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vl--L~GppG~GKT~La~~lA~~l 68 (162)
+.++..++.-+..-...||+. +.|+||||||.+++.+|+.+
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 445566666665555667776 67999999999999999875
No 360
>PLN02674 adenylate kinase
Probab=97.54 E-value=0.00015 Score=59.96 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
..+++|.||||+||+|+++.+|+.+|.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~ 58 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLC 58 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3579999999999999999999999876
No 361
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.00033 Score=61.25 Aligned_cols=87 Identities=9% Similarity=0.057 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh----C-CceEEEEeccC--CChhhh------cceeEeecCeEEEeccHHHH---
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT----Q-REVEYICLSRD--TTEADI------KQRREIVNGTAIYYDQSAVR--- 106 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l----g-~p~~~v~~~~~--~~~~dL------~g~~~~~~G~~~~~~gpl~~--- 106 (162)
.+..++|+||+||||||++..+|... | ..+..+.+... ...+.| .+-+... .-..+-+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~----~~~~~~l~~~l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA----VKDGGDLQLALA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe----cCCcccHHHHHH
Confidence 35689999999999999999999653 3 23333433211 011222 2211110 001112223
Q ss_pred HhhcCcEEEEeCCCCCCcc--HHHHHHHh
Q psy4122 107 AAIEGRVLILEGIEKAERN--VLPVLNNL 133 (162)
Q Consensus 107 A~~~G~vlllDEId~a~~~--v~~~L~~l 133 (162)
.+.+..+++||+.-+.+.+ ..+.|..+
T Consensus 212 ~l~~~DlVLIDTaG~~~~d~~l~e~La~L 240 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRDRTVSDQIAML 240 (374)
T ss_pred HhcCCCEEEEcCCCCCcccHHHHHHHHHH
Confidence 3456789999999876543 44444444
No 362
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.52 E-value=0.0002 Score=55.79 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
+++++|+||+|+||+++++.+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 5689999999999999999998775
No 363
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.52 E-value=0.00016 Score=53.98 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 35 RWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 35 ~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
+.+.+....|.-++|.|+=|+|||++++.+++.+|..
T Consensus 6 ~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 6 KKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3445555667789999999999999999999999875
No 364
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.51 E-value=0.00018 Score=58.37 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=39.4
Q ss_pred HHHHHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhc
Q psy4122 31 LSHLRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 31 ~~~L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~ 87 (162)
+.-|-.++.. +..|..+++.||||||||+++.+++.. .|.++.++++. .++.+++
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e--e~~~~i~ 65 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE--EHPVQVR 65 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee--CCHHHHH
Confidence 3445566653 446778999999999999999987743 47788888874 3455554
No 365
>PRK06547 hypothetical protein; Provisional
Probab=97.51 E-value=9.9e-05 Score=57.69 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+++.|++|||||++++.+++.++.++.
T Consensus 17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~~ 44 (172)
T PRK06547 17 TVLIDGRSGSGKTTLAGALAARTGFQLV 44 (172)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 4667799999999999999999887643
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.50 E-value=0.00082 Score=51.41 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=25.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
++++|+||+|||+++..+|..+ |..+..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999998764 5555555554
No 367
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.50 E-value=0.0011 Score=60.77 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe-ecCe--EEEecc
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI-VNGT--AIYYDQ 102 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~-~~G~--~~~~~g 102 (162)
+++..++.+++++..- ...++++||+|+||||....+.+.++.+-..+..-+|.-.-.+-+.... .+.+ ..|.+
T Consensus 300 ~~~~~~~~l~~~~~~~--~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~- 376 (564)
T TIGR02538 300 FEPDQKALFLEAIHKP--QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAA- 376 (564)
T ss_pred CCHHHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHH-
Confidence 4677777888777532 2378999999999999998877777654322222233211112221111 1211 22221
Q ss_pred HHHHHhhc-CcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 103 SAVRAAIE-GRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 103 pl~~A~~~-G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.+-.++|. ..++++.||. .++...........|.+.+
T Consensus 377 ~l~~~LR~dPDvI~vGEiR--d~eta~~a~~aa~tGHlv~ 414 (564)
T TIGR02538 377 ALRSFLRQDPDIIMVGEIR--DLETAEIAIKAAQTGHLVL 414 (564)
T ss_pred HHHHHhccCCCEEEeCCCC--CHHHHHHHHHHHHcCCcEE
Confidence 23344555 4799999997 4555554444555776655
No 368
>PLN02200 adenylate kinase family protein
Probab=97.50 E-value=0.00011 Score=60.15 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.+++.|+||||||++++.+|+.+|.+
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~~ 70 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGFK 70 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 47889999999999999999999876
No 369
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.49 E-value=0.0002 Score=61.86 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=50.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee--Ee---ec--CeEEEeccHHH-HHhhc-CcE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR--EI---VN--GTAIYYDQSAV-RAAIE-GRV 113 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~--~~---~~--G~~~~~~gpl~-~A~~~-G~v 113 (162)
.++++++.||+|+||||++++++.........+.+ +|+..-.+-... .+ .+ |.......-++ .++|. ..+
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivti-Ed~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITI-EDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEE-CCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 57899999999999999999999887655444443 232211111100 00 01 11111111233 34554 478
Q ss_pred EEEeCCCCCCccHHHHHHHhh
Q psy4122 114 LILEGIEKAERNVLPVLNNLL 134 (162)
Q Consensus 114 lllDEId~a~~~v~~~L~~ll 134 (162)
+++.|+.- ++..+.|....
T Consensus 240 IivGEiR~--~ea~~~l~a~~ 258 (344)
T PRK13851 240 ILLGEMRD--DAAWAYLSEVV 258 (344)
T ss_pred EEEEeeCc--HHHHHHHHHHH
Confidence 99999973 34566555543
No 370
>PRK01184 hypothetical protein; Provisional
Probab=97.48 E-value=0.00011 Score=56.79 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
-++|+|+||+||||+++ +++.+|.++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i 29 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVV 29 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEE
Confidence 47899999999999987 7888887753
No 371
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.47 E-value=0.0001 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=21.3
Q ss_pred EEcCCCchHHHHHHHHHHHhCCc
Q psy4122 49 LIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 49 L~GppG~GKT~La~~lA~~lg~p 71 (162)
|.||||+|||++++.+|+.+|..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~ 23 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV 23 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE
T ss_pred CcCCCCCChHHHHHHHHHhcCcc
Confidence 68999999999999999999865
No 372
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.46 E-value=0.00076 Score=52.97 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=28.5
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
++.+--.+..|+.+.|.||.|+|||+|.+.+|...
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444445578899999999999999999999876
No 373
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.46 E-value=0.00017 Score=54.68 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l 68 (162)
++++|+||+|||++++.++..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 374
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.46 E-value=0.00045 Score=57.82 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh----C-CceEEEEec
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT----Q-REVEYICLS 78 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l----g-~p~~~v~~~ 78 (162)
++.++|+||+|+||||++..+|..+ | ..+..+.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 3468999999999999999998654 3 555555553
No 375
>PF05729 NACHT: NACHT domain
Probab=97.45 E-value=0.00011 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.++|.|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 58899999999999999999655
No 376
>PRK10436 hypothetical protein; Provisional
Probab=97.45 E-value=0.0015 Score=58.52 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE-EEEeccCCChhhhcc--eeEee-cCeEEEec
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE-YICLSRDTTEADIKQ--RREIV-NGTAIYYD 101 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~-~v~~~~~~~~~dL~g--~~~~~-~G~~~~~~ 101 (162)
+++..++.+++++..- +.-+++.||+|+||||...++...++.+-. .+++ +|.-.-.+-+ +..+. +....|..
T Consensus 202 ~~~~~~~~l~~~~~~~--~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~Ti-EDPvE~~l~gi~Q~~v~~~~g~~f~~ 278 (462)
T PRK10436 202 MTPAQLAQFRQALQQP--QGLILVTGPTGSGKTVTLYSALQTLNTAQINICSV-EDPVEIPLAGINQTQIHPKAGLTFQR 278 (462)
T ss_pred cCHHHHHHHHHHHHhc--CCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEe-cCCccccCCCcceEeeCCccCcCHHH
Confidence 5677788888877532 337999999999999998876666655432 2333 2311111212 11121 11122321
Q ss_pred cHHHHHhhc-CcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 102 QSAVRAAIE-GRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 102 gpl~~A~~~-G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.+-.++|+ ..++++.||.- ++...........|.+++
T Consensus 279 -~lr~~LR~dPDvI~vGEIRD--~eta~~al~AA~TGHlVl 316 (462)
T PRK10436 279 -VLRALLRQDPDVIMVGEIRD--GETAEIAIKAAQTGHLVL 316 (462)
T ss_pred -HHHHHhcCCCCEEEECCCCC--HHHHHHHHHHHHcCCcEE
Confidence 23334554 47999999963 344443334444676655
No 377
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.45 E-value=7.6e-05 Score=58.96 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=24.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++++|.|||||||+++.++ .+|.++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i 28 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVI 28 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCcee
Confidence 47899999999999999999 8888754
No 378
>PRK14526 adenylate kinase; Provisional
Probab=97.45 E-value=0.00013 Score=58.88 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=24.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+++|.|||||||||+++.+|..++.+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~ 28 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH 28 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 488999999999999999999988763
No 379
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0015 Score=55.54 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEee-cCeEEEecc--HHH
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIV-NGTAIYYDQ--SAV 105 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~-~G~~~~~~g--pl~ 105 (162)
...+.++..++.....+-.||+|+.|+||+.+++.+|..+..... -.+.++..+.++.- +. .|...-.+. .+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~-~~~~~~~~p~n~~~---~d~~g~~i~vd~Ir~l~ 78 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQI-TNLNEQELPANIIL---FDIFDKDLSKSEFLSAI 78 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCC-CCCCCCCCCcceEE---eccCCCcCCHHHHHHHH
Confidence 356777877776666656679999999999999999988721100 00000111111110 10 011110000 011
Q ss_pred H-----Hhh--cCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 106 R-----AAI--EGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 106 ~-----A~~--~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+ ++. +..+++||+.++++.+..++|+..||+
T Consensus 79 ~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE 116 (299)
T PRK07132 79 NKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE 116 (299)
T ss_pred HHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC
Confidence 1 111 336999999999999999999999996
No 380
>PRK04040 adenylate kinase; Provisional
Probab=97.44 E-value=0.00014 Score=57.50 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+.++++|.|||||||+++.+++.++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999983
No 381
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.43 E-value=0.00012 Score=60.66 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l 68 (162)
+-+++.|+|||||||+|+.+++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 357889999999999999999988
No 382
>PRK13975 thymidylate kinase; Provisional
Probab=97.43 E-value=0.00013 Score=56.70 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
+.-+.++|++||||||+++.+|+.++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999999853
No 383
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.42 E-value=0.00018 Score=51.42 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q psy4122 47 VFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~ 66 (162)
|++.|+||+|||||.+.+..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 384
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.41 E-value=0.00013 Score=56.10 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
.+..++++|++|+||||+++.+++.++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4668999999999999999999988864
No 385
>PRK10646 ADP-binding protein; Provisional
Probab=97.41 E-value=0.00041 Score=53.67 Aligned_cols=43 Identities=12% Similarity=0.187 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.+.+.-+.+......|.-++|.|+=|+|||++++.+++.+|.+
T Consensus 13 ~t~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 13 ATLDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3444444555555567778999999999999999999999864
No 386
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.41 E-value=0.00027 Score=54.93 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEY 74 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~ 74 (162)
+++++|+||+|+|||+|++.+.......+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~ 32 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGR 32 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccc
Confidence 5799999999999999999999887655543
No 387
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.41 E-value=0.00028 Score=54.16 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceE
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT---QREVE 73 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l---g~p~~ 73 (162)
+.|.|++||||||+++.+++.+ |..+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 6899999999999999999887 55543
No 388
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.40 E-value=0.00014 Score=57.00 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+.+.|+||+|||||+|++.++..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467899999999999999999998875
No 389
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.40 E-value=0.00018 Score=56.17 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
|+.+.+.|++||||||+++.++..++.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 678999999999999999999998875
No 390
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=97.39 E-value=0.00099 Score=57.43 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhc--c--eeEee------cC-
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIK--Q--RREIV------NG- 95 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~--g--~~~~~------~G- 95 (162)
++...+.|+.++. .++++++.|++|+|||++.+.++..+......+.+ ++. .++. . ...+. .|
T Consensus 164 ~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~i-Ed~--~El~~~~~~~~~l~~r~~~~~g~ 237 (340)
T TIGR03819 164 PPGVARLLRAIVA---ARLAFLISGGTGSGKTTLLSALLALVAPDERIVLV-EDA--AELRPDHPHVVRLEARPANVEGA 237 (340)
T ss_pred CHHHHHHHHHHHh---CCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEE-CCc--ceecCCCCCeeeEEeccccccCc
Confidence 4566666666654 35799999999999999999998776543333333 232 1121 1 00110 11
Q ss_pred -eEEEeccHHHHHhhc-CcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 96 -TAIYYDQSAVRAAIE-GRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 96 -~~~~~~gpl~~A~~~-G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
...+.+ .+..|+|. ..++++.|+- .+++.+.|+ .+..|
T Consensus 238 ~~~t~~~-ll~~aLR~~PD~IivGEiR--g~Ea~~~l~-a~~tG 277 (340)
T TIGR03819 238 GAVTLTD-LVRQALRMRPDRIVVGEVR--GAEVVDLLA-ALNTG 277 (340)
T ss_pred CccCHHH-HHHHHhccCCCeEEEeCcC--cHHHHHHHH-HHHcC
Confidence 111221 23345554 4799999997 346666554 44444
No 391
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.39 E-value=0.00021 Score=58.25 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg 69 (162)
++|+|+||+||||+|+.+++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 392
>PRK14529 adenylate kinase; Provisional
Probab=97.39 E-value=0.00015 Score=59.13 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=25.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+++|.|||||||||+++.+|+.++.+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 5899999999999999999999998743
No 393
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.37 E-value=0.00024 Score=55.53 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=25.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
+.+.|+||||||++++.+++.+ |.++..+++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 6789999999999999999887 4555555443
No 394
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.37 E-value=0.00023 Score=58.79 Aligned_cols=38 Identities=5% Similarity=0.046 Sum_probs=30.6
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHH---HhCCceEEEEec
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLE---LTQREVEYICLS 78 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~ 78 (162)
+..|.-+++.|+||||||+++.++|. ..|.++.++++.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 34566789999999999999999875 347788888874
No 395
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.36 E-value=0.00048 Score=59.21 Aligned_cols=91 Identities=11% Similarity=0.136 Sum_probs=51.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee---Ee---e--cCeEEEecc-HHHHHhhc-Cc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR---EI---V--NGTAIYYDQ-SAVRAAIE-GR 112 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~---~~---~--~G~~~~~~g-pl~~A~~~-G~ 112 (162)
.++++++.|++|+||||+.+++.......-..+.+ +|+..-.+-..+ .+ . .|.....-. .+-.|+|. ..
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti-Ed~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITV-EDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe-cCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 56799999999999999999999888655444444 332111110111 11 1 111111111 23344554 47
Q ss_pred EEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 113 VLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 113 vlllDEId~a~~~v~~~L~~lle~r 137 (162)
++++.|+.- +++.+.|.. +..|
T Consensus 238 ~IivGEiR~--~ea~~~l~a-~~tG 259 (332)
T PRK13900 238 RIIVGELRG--AEAFSFLRA-INTG 259 (332)
T ss_pred eEEEEecCC--HHHHHHHHH-HHcC
Confidence 999999974 455655444 4444
No 396
>PRK13764 ATPase; Provisional
Probab=97.36 E-value=0.00035 Score=64.45 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
++++++.||||+||||++++++..+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999999977754
No 397
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.35 E-value=0.00029 Score=54.15 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=23.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+.+.|+|+||+|||++++.++..+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999998873
No 398
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.34 E-value=0.00031 Score=56.12 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=36.6
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh---------CCceEEEEeccCCChhhh
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT---------QREVEYICLSRDTTEADI 86 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l---------g~p~~~v~~~~~~~~~dL 86 (162)
..|-+++. .+..|+-+.|+||||||||+++.++|... +..+.++......+...+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 34445555 34467788999999999999999998542 245566665443344433
No 399
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.33 E-value=0.00033 Score=54.88 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg 69 (162)
+.|.||+||||||+++.++..++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999873
No 400
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.33 E-value=0.0004 Score=54.64 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~ 87 (162)
.|.-++++||||||||+++.+++.. .|.++.++.+-. .+...+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~ 57 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFK 57 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHH
Confidence 4667899999999999999998853 366677777743 3444443
No 401
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.33 E-value=0.0011 Score=57.90 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC--Cc-eEEEEeccCCChhhhcceeE------ee-cCe-EEEeccHHHHHhhc-C
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ--RE-VEYICLSRDTTEADIKQRRE------IV-NGT-AIYYDQSAVRAAIE-G 111 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg--~p-~~~v~~~~~~~~~dL~g~~~------~~-~G~-~~~~~gpl~~A~~~-G 111 (162)
+..+++.||+|+||||+.+.+....+ .+ ...+.+ +|.-.-.+.+... .. +.+ ..|.+ .+-.|+|. .
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti-Edp~E~~~~~~~~~~~~~q~evg~~~~~~~~-~l~~aLR~~P 226 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY-EDPIEYILGSPDDLLPPAQSQIGRDVDSFAN-GIRLALRRAP 226 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE-ecCchhccCCCceeecccccccCCCccCHHH-HHHHhhccCC
Confidence 34789999999999999999987663 22 233444 3321111111100 11 111 12221 23445555 4
Q ss_pred cEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 112 RVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 112 ~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.++++.|+. .++.........+.|.+.+
T Consensus 227 D~I~vGEiR--d~et~~~al~aa~TGH~v~ 254 (372)
T TIGR02525 227 KIIGVGEIR--DLETFQAAVLAGQSGHFCL 254 (372)
T ss_pred CEEeeCCCC--CHHHHHHHHHHHhcCCcEE
Confidence 799999997 3455555556667776654
No 402
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.33 E-value=0.00038 Score=55.63 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHH---HhCCceEEEEeccCCChhhh
Q psy4122 31 LSHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLE---LTQREVEYICLSRDTTEADI 86 (162)
Q Consensus 31 ~~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~~~~~~~dL 86 (162)
...|-.++. .+..|..+++.|+||+|||+++.+++. ..|.++.+++. +.+.+++
T Consensus 6 i~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~--e~~~~~i 63 (229)
T TIGR03881 6 VEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT--EESRESI 63 (229)
T ss_pred hhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc--cCCHHHH
Confidence 344555653 455778899999999999999998773 23566666665 3444444
No 403
>KOG0735|consensus
Probab=97.33 E-value=0.00045 Score=64.83 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=46.8
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCc----eEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcC-cEEE
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQRE----VEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEG-RVLI 115 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p----~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G-~vll 115 (162)
.....+++|.||+|||||.|+++++...-.+ ++++.|+.. ..+.+-. + +-.| ...+..|+.++ .+++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l-~~~~~e~---i---Qk~l-~~vfse~~~~~PSiIv 499 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTL-DGSSLEK---I---QKFL-NNVFSEALWYAPSIIV 499 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhc-cchhHHH---H---HHHH-HHHHHHHHhhCCcEEE
Confidence 3345599999999999999999999877655 345666421 1111110 0 0001 12456777776 6899
Q ss_pred EeCCCCC
Q psy4122 116 LEGIEKA 122 (162)
Q Consensus 116 lDEId~a 122 (162)
||++|..
T Consensus 500 LDdld~l 506 (952)
T KOG0735|consen 500 LDDLDCL 506 (952)
T ss_pred Ecchhhh
Confidence 9999863
No 404
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.32 E-value=0.00035 Score=55.40 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=34.5
Q ss_pred HHHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 31 LSHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 31 ~~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
...|-.++. .+..|.-+++.|+||||||+++.++|... |.++.++..
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 344556664 34466678999999999999999998543 567767654
No 405
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.31 E-value=0.00033 Score=55.39 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.-+.|.|++|||||||++.++..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999884
No 406
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.30 E-value=0.00054 Score=64.61 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcce-eEeecCeE----
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQR-REIVNGTA---- 97 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~-~~~~~G~~---- 97 (162)
+++.=.+.++.++.+ ++-++|.|+||||||++++.+...+ |+.+..+.. .-...+.+.. ..+. ..+
T Consensus 353 Ls~~Q~~Av~~i~~s---~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~Ap--Tg~Aa~~L~~~~g~~-a~Ti~~~ 426 (744)
T TIGR02768 353 LSEEQYEAVRHVTGS---GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAAL--SGKAAEGLQAESGIE-SRTLASL 426 (744)
T ss_pred CCHHHHHHHHHHhcC---CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC--cHHHHHHHHhccCCc-eeeHHHH
Confidence 455555555555432 3468999999999999999987544 554433322 1123233211 0010 011
Q ss_pred --EEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc--CCeEEEc
Q psy4122 98 --IYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLE--NREMHLE 142 (162)
Q Consensus 98 --~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle--~r~l~l~ 142 (162)
.|..+. .-.....+||+||+..++...+..|..... .-.+++-
T Consensus 427 ~~~~~~~~--~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 427 EYAWANGR--DLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVLV 473 (744)
T ss_pred HhhhccCc--ccCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEE
Confidence 121110 113456899999999999988887777443 2345443
No 407
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.29 E-value=0.00022 Score=55.96 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg 69 (162)
|.+.||+|+||||+|+.++..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999987
No 408
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=97.29 E-value=0.0019 Score=57.01 Aligned_cols=31 Identities=26% Similarity=0.171 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHH
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSL 60 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~L 60 (162)
++|-=.+.+..+ ..|+++++.+|+|+|||..
T Consensus 27 ~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a 57 (460)
T PRK11776 27 MTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAA 57 (460)
T ss_pred CCHHHHHHHHHH----hcCCCEEEECCCCCcHHHH
Confidence 444334444444 3588999999999999964
No 409
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.29 E-value=0.00054 Score=54.65 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHH---HhCCceEEEEec
Q psy4122 28 QDWLSHLRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLE---LTQREVEYICLS 78 (162)
Q Consensus 28 ~~~~~~L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~ 78 (162)
++....|-.++.. +..|.-+++.|+||+|||+++.++|. ..|.++.++.+-
T Consensus 6 ~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 6 PTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3445556666643 34566789999999999999999996 347777777764
No 410
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.29 E-value=0.00013 Score=59.71 Aligned_cols=50 Identities=14% Similarity=-0.001 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEe
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICL 77 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~ 77 (162)
+.....|-.++..+..|..+++.|+||+|||+++.++|... |.++.++++
T Consensus 14 ~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 14 WWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44455566666566678889999999999999999987542 777777776
No 411
>KOG1970|consensus
Probab=97.28 E-value=0.00037 Score=63.57 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYIC 76 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~ 76 (162)
+.-+||+||+||||||.++-+|..+|..++..+
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 345788899999999999999999999876544
No 412
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.27 E-value=0.0002 Score=56.81 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
|.-+.+.||+|||||||++.++..++.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456889999999999999999988763
No 413
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.26 E-value=0.00099 Score=61.69 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=24.8
Q ss_pred CcEEEEeCCCCCCccHHHHHHHhhcC-CeEEE
Q psy4122 111 GRVLILEGIEKAERNVLPVLNNLLEN-REMHL 141 (162)
Q Consensus 111 G~vlllDEId~a~~~v~~~L~~lle~-r~l~l 141 (162)
..++|+||....+-.....|...+.. .++++
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIl 297 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPPHARVIF 297 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhcccCCEEEE
Confidence 47999999999999888888887764 35555
No 414
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.25 E-value=0.0013 Score=61.12 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
++.+--....|+.+.++||.|||||||++.++...
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45555556679999999999999999999999765
No 415
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.25 E-value=0.00048 Score=61.74 Aligned_cols=55 Identities=11% Similarity=0.237 Sum_probs=40.0
Q ss_pred HHHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHH---H-hCCceEEEEeccCCChhhhc
Q psy4122 31 LSHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLE---L-TQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 31 ~~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~---~-lg~p~~~v~~~~~~~~~dL~ 87 (162)
+.-|-.|+. .+..|..+++.||||||||+++.+++. . .|.++.++++. -++++++
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e--E~~~~l~ 66 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE--ESPQDII 66 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe--cCHHHHH
Confidence 344555555 344677899999999999999999853 2 26899899885 3466664
No 416
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00018 Score=59.62 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
|+++--....|+-+.|+||+|||||||.+.+|....
T Consensus 19 l~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred eccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334444555688999999999999999999997653
No 417
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.24 E-value=0.0011 Score=57.47 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.+..++++||+|+||||+.+.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998763
No 418
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.24 E-value=0.0015 Score=60.60 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.|+.+--....|+.+.++|+.|||||||++.++...
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~ 515 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344555556679999999999999999999999765
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.24 E-value=0.0018 Score=57.45 Aligned_cols=88 Identities=17% Similarity=0.257 Sum_probs=50.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCC--Chhhhc------ceeEeecCeEEEeccHHHHHh--
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDT--TEADIK------QRREIVNGTAIYYDQSAVRAA-- 108 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~--~~~dL~------g~~~~~~G~~~~~~gpl~~A~-- 108 (162)
++.++|+||+||||||++..+|..+ |..+..+.+...- ....|. +-+.. .......+..++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----~~~~~~~l~~~l~~ 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----VVYDPKELAKALEQ 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE----ccCCHHhHHHHHHH
Confidence 4578999999999999999888543 3455555543210 111222 11111 111122333333
Q ss_pred -hcCcEEEEeCCCCCCc--cHHHHHHHhhc
Q psy4122 109 -IEGRVLILEGIEKAER--NVLPVLNNLLE 135 (162)
Q Consensus 109 -~~G~vlllDEId~a~~--~v~~~L~~lle 135 (162)
....++|||..-+.+. .....|..+++
T Consensus 297 ~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~ 326 (424)
T PRK05703 297 LRDCDVILIDTAGRSQRDKRLIEELKALIE 326 (424)
T ss_pred hCCCCEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence 4458999998866544 45667777777
No 420
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.24 E-value=0.0012 Score=53.29 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh--CCceEEEEec-cCCC-hhhhcceeEe----------
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT--QREVEYICLS-RDTT-EADIKQRREI---------- 92 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l--g~p~~~v~~~-~~~~-~~dL~g~~~~---------- 92 (162)
++.=...+..+.. .+-+.+.||+|||||.||-+.|..+ ......+.+. +..+ .+++--.+.-
T Consensus 6 ~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 6 NEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred CHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 3333444444542 4578999999999999999888422 3333333222 2211 1222111100
Q ss_pred -------------------ecCeEEEeccHHHHHh-hcCcEEEEeCCCCCCccHHHHHHHhhcC-CeEEEc
Q psy4122 93 -------------------VNGTAIYYDQSAVRAA-IEGRVLILEGIEKAERNVLPVLNNLLEN-REMHLE 142 (162)
Q Consensus 93 -------------------~~G~~~~~~gpl~~A~-~~G~vlllDEId~a~~~v~~~L~~lle~-r~l~l~ 142 (162)
..|.....+-.+.+.- ....++++||...+.++.+..+..-+.+ ..+++.
T Consensus 82 p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 82 PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIIT 152 (205)
T ss_dssp HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEe
Confidence 1122222211111111 1247899999999998877777666654 455553
No 421
>KOG1942|consensus
Probab=97.23 E-value=0.00039 Score=59.75 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy4122 29 DWLSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYI 75 (162)
Q Consensus 29 ~~~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v 75 (162)
+..-.+-+|+++.. .|+.+||.||||+|||.||-.+++.+|..+-++
T Consensus 48 eAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFc 95 (456)
T KOG1942|consen 48 EAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFC 95 (456)
T ss_pred hhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcc
Confidence 34445567776554 678999999999999999999999998654433
No 422
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.23 E-value=0.00019 Score=57.23 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++.++|+||+|||||||++.+.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4557899999999999999999754
No 423
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.22 E-value=0.00039 Score=54.17 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
+.|...+.+. ...+++|+||.|+|||+|++.+......
T Consensus 9 ~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 9 EKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp HHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred HHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 3444444432 2358999999999999999999988843
No 424
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.22 E-value=0.0011 Score=57.84 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcce---eEeecCeEEE-
Q psy4122 28 QDWLSHLRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQR---REIVNGTAIY- 99 (162)
Q Consensus 28 ~~~~~~L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~---~~~~~G~~~~- 99 (162)
++....|-+++.. +..|.-+++.|+||+|||+|+.++|... +.++.+++.. -+.+++..+ .........+
T Consensus 65 ~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E--Es~~qi~~Ra~rlg~~~~~l~l~ 142 (372)
T cd01121 65 PTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE--ESPEQIKLRADRLGISTENLYLL 142 (372)
T ss_pred ccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC--cCHHHHHHHHHHcCCCcccEEEE
Confidence 4445556666653 4456678999999999999999998654 3466666653 234444321 1111112111
Q ss_pred ecc---HHHHHhh--cCcEEEEeCCCCC
Q psy4122 100 YDQ---SAVRAAI--EGRVLILEGIEKA 122 (162)
Q Consensus 100 ~~g---pl~~A~~--~G~vlllDEId~a 122 (162)
.+. -+.+++. +..+++||+|..+
T Consensus 143 ~e~~le~I~~~i~~~~~~lVVIDSIq~l 170 (372)
T cd01121 143 AETNLEDILASIEELKPDLVIIDSIQTV 170 (372)
T ss_pred ccCcHHHHHHHHHhcCCcEEEEcchHHh
Confidence 111 2333333 3479999999654
No 425
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.21 E-value=0.001 Score=58.69 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=52.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC-----CceEEEEec-------cCC-ChhhhcceeEeecCeEEEeccHHH---HH
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ-----REVEYICLS-------RDT-TEADIKQRREIVNGTAIYYDQSAV---RA 107 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg-----~p~~~v~~~-------~~~-~~~dL~g~~~~~~G~~~~~~gpl~---~A 107 (162)
++.+.|+||+|+||||..--+|+... ..+-.++.. +.+ +..++++-+-. .++..--+. .+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~----vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE----VVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE----EecCHHHHHHHHHH
Confidence 56899999999999987777776654 122223221 111 23444443221 111212243 44
Q ss_pred hhcCcEEEEeCCCCCCcc--HHHHHHHhhcC
Q psy4122 108 AIEGRVLILEGIEKAERN--VLPVLNNLLEN 136 (162)
Q Consensus 108 ~~~G~vlllDEId~a~~~--v~~~L~~lle~ 136 (162)
+++..++++|-+-+-+.+ ..+-|-.+++.
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~ 309 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDV 309 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhc
Confidence 678899999999775554 45556666653
No 426
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.001 Score=56.85 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=25.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
-++|+|||+||||.|+-.+|+.+|-++.
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eII 32 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEII 32 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 4789999999999999999999998754
No 427
>KOG0479|consensus
Probab=97.21 E-value=0.00048 Score=63.43 Aligned_cols=94 Identities=12% Similarity=0.209 Sum_probs=62.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe--ecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI--VNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~--~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
|+||+|+|.+-||.|.+.+-....+. .-+.....+-.-|...-+. +.|....+-|+.+. ...||+-|||+|+++
T Consensus 336 NiLlvGDPSvAKSQLLRyVLntAplA--I~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVL--ADRGVVCIDEFDKMs 411 (818)
T KOG0479|consen 336 NILLVGDPSVAKSQLLRYVLNTAPLA--IATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVL--ADRGVVCIDEFDKMS 411 (818)
T ss_pred eEEEecCchHHHHHHHHHHHhccccc--ccccCCCCCCccceeEEeeccccchhhhhcCceEE--ccCceEEehhccccc
Confidence 69999999999999999876544322 2122222222223222121 12444444444333 366899999999999
Q ss_pred ccHHHHHHHhhcCCeEEEcC
Q psy4122 124 RNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~~ 143 (162)
.-=-.+++.+||.++++|..
T Consensus 412 DiDRvAIHEVMEQqtVTIaK 431 (818)
T KOG0479|consen 412 DIDRVAIHEVMEQQTVTIAK 431 (818)
T ss_pred chhHHHHHHHHhcceEEeEe
Confidence 98889999999999999964
No 428
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.20 E-value=0.00032 Score=49.78 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=19.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg 69 (162)
+++.|++|||||+|++.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999986553
No 429
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.20 E-value=0.00076 Score=54.81 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=30.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHH-H--hCCceEEEEeccCCChhhhc
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLE-L--TQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~-~--lg~p~~~v~~~~~~~~~dL~ 87 (162)
+..|..+++.|+||||||+++.+++. . .|.++.+++.. -+..+++
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e--~~~~~~~ 68 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ--LTTTEFI 68 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC--CCHHHHH
Confidence 33567899999999999999877664 3 25666666643 3344543
No 430
>PLN02459 probable adenylate kinase
Probab=97.20 E-value=0.00037 Score=58.22 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=24.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+++|.||||+|||++++.+|+.+|.+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~ 57 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPH 57 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 588899999999999999999998763
No 431
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.19 E-value=0.00081 Score=53.69 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhc
Q psy4122 34 LRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 34 L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~ 87 (162)
|-.++. .+..|..+++.|+||+|||+++.+++.. .|.++.++++. .++.+++
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e--~~~~~l~ 60 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE--EREERIL 60 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC--CCHHHHH
Confidence 344443 3335667899999999999999998842 37788888774 3455554
No 432
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.19 E-value=0.0023 Score=59.84 Aligned_cols=27 Identities=22% Similarity=0.120 Sum_probs=21.9
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHH
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAM 62 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~ 62 (162)
.++..+..++++++.|++|||||+.+-
T Consensus 171 qil~~i~~gkdvIv~A~TGSGKTtqvP 197 (675)
T PHA02653 171 KIFEAWISRKPVVLTGGTGVGKTSQVP 197 (675)
T ss_pred HHHHHHHhCCCEEEECCCCCCchhHHH
Confidence 555556668999999999999999653
No 433
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.19 E-value=0.00061 Score=59.68 Aligned_cols=60 Identities=10% Similarity=0.129 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC--Cc---eEEEEec-cCCChhhhcc
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ--RE---VEYICLS-RDTTEADIKQ 88 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg--~p---~~~v~~~-~~~~~~dL~g 88 (162)
.+-...-+.+..+-.|+..+++||||||||+|++.+|+.+. +| +.++-+. ...+..|+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~ 183 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRR 183 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHH
Confidence 34444445555555788999999999999999999998663 32 3343343 4445666653
No 434
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.19 E-value=0.0011 Score=61.03 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=25.1
Q ss_pred CcEEEEeCCCCCCccHHHHHHHhhcC-CeEEEc
Q psy4122 111 GRVLILEGIEKAERNVLPVLNNLLEN-REMHLE 142 (162)
Q Consensus 111 G~vlllDEId~a~~~v~~~L~~lle~-r~l~l~ 142 (162)
..+||+||....+...+..|...+.. .++++-
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlv 292 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPPNTKLILL 292 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCCCCEEEEE
Confidence 47999999999999988888887753 455553
No 435
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00028 Score=57.80 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
++|+|+||+|||++|+.+|+.+...-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhh
Confidence 68899999999999999999886543
No 436
>PRK04328 hypothetical protein; Provisional
Probab=97.18 E-value=0.00077 Score=55.31 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHHHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHH---HhCCceEEEEeccCCChhhh
Q psy4122 31 LSHLRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLE---LTQREVEYICLSRDTTEADI 86 (162)
Q Consensus 31 ~~~L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~~~~~~~dL 86 (162)
..-|-+++.. +..|..+++.||||||||+++.+++. ..|.++.++++.+ ++.++
T Consensus 9 i~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee--~~~~i 66 (249)
T PRK04328 9 IPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE--HPVQV 66 (249)
T ss_pred chhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC--CHHHH
Confidence 3345556654 33577889999999999999998774 3477888888743 34444
No 437
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.17 E-value=0.00044 Score=53.90 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
++..++.|+..++ ++-++|.|++|+|||||++.+.....
T Consensus 22 ~~~g~~~l~~~l~----~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 22 TGEGIEELKELLK----GKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTTTHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CCcCHHHHHHHhc----CCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5677788888776 57899999999999999999886543
No 438
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.17 E-value=0.001 Score=51.29 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.+.+.=+.+......|.-|+|.|+=|+|||++++.+++.+|..
T Consensus 10 ~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~ 52 (149)
T COG0802 10 ATLALGERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGVD 52 (149)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCCC
Confidence 3444444555566688899999999999999999999999853
No 439
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.17 E-value=0.00045 Score=55.17 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=24.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.-+++.|.||+|||++++.+|..+|.+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~ 30 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAID 30 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCe
Confidence 358899999999999999999998865
No 440
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.17 E-value=0.00099 Score=56.09 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
....++.+......++.+.++|+||+|||+++..++..+ |..+..+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 444455554444456678999999999999999988755 5666666665
No 441
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.17 E-value=0.0028 Score=63.00 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
...|+.++..++.++++|+|||||||.+-++....|+
T Consensus 72 ~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~ 108 (1283)
T TIGR01967 72 REDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGR 108 (1283)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCC
Confidence 3455555555678999999999999999988866654
No 442
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.00039 Score=56.69 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
...++++--.+..|+-+.+.||.|||||||.+.+|......-=.+++
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l 64 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQL 64 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEE
Confidence 55666666667789999999999999999999999766433223433
No 443
>KOG0060|consensus
Probab=97.15 E-value=0.00041 Score=63.61 Aligned_cols=56 Identities=14% Similarity=0.129 Sum_probs=39.0
Q ss_pred CccceeceeeeecccCCCCCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 7 SQEYVRFTLIYLFSVNTDALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 7 ~~~y~~~~~~~~~~~~~~~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.|-++.|++..+..++- .+..+ +++.-....|+++|++||.|||||+|-+.+|.+.
T Consensus 430 ~Dn~i~~e~v~l~tPt~---g~~li---e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW 485 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTN---GDLLI---ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW 485 (659)
T ss_pred ccceEEeeeeeecCCCC---Cceee---eeeeeEecCCCeEEEECCCCCchhHHHHHHhccc
Confidence 34677888887766552 11111 1122234468999999999999999999999765
No 444
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.13 E-value=0.00051 Score=56.33 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=23.4
Q ss_pred EEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCC
Q psy4122 49 LIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTT 82 (162)
Q Consensus 49 L~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~ 82 (162)
++||+|+||||+++.+.+. .|+++..+++.+..+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence 4799999999999988865 478888888875443
No 445
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.13 E-value=0.00055 Score=60.49 Aligned_cols=34 Identities=9% Similarity=0.059 Sum_probs=27.9
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+++..+-.|+..+++||||||||+|++.++....
T Consensus 161 D~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 161 DLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eeecccccCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 4444555788999999999999999999997664
No 446
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.13 E-value=0.00045 Score=62.88 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=27.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEY 74 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~ 74 (162)
++++|+|.+||||||+.+.+|+.+|+++..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD 36 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFAD 36 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 479999999999999999999999999763
No 447
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.13 E-value=0.00079 Score=54.30 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=22.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
.-+.|.||+|+|||||++.++..+..
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35788899999999999999988754
No 448
>PRK14974 cell division protein FtsY; Provisional
Probab=97.12 E-value=0.0013 Score=56.65 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=20.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
-++++|+||+||||++..+|..+
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999998888765
No 449
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.0016 Score=57.78 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=51.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCC--ChhhhcceeEeecCeE--EEeccHHHHHh---h---cC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDT--TEADIKQRREIVNGTA--IYYDQSAVRAA---I---EG 111 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~--~~~dL~g~~~~~~G~~--~~~~gpl~~A~---~---~G 111 (162)
+.++|+||+||||||++..+|..+ |..+-.+.+...- ..++|.......+=.. ...+..+.+++ + .-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 468999999999999999999655 3444444443111 1233332101111011 11223344444 3 24
Q ss_pred cEEEEeCCCCCCcc--HHHHHHHhhc
Q psy4122 112 RVLILEGIEKAERN--VLPVLNNLLE 135 (162)
Q Consensus 112 ~vlllDEId~a~~~--v~~~L~~lle 135 (162)
.++|+|-.-+.+.+ .+..|..+++
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk 347 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMG 347 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHh
Confidence 79999999887654 4666666665
No 450
>PRK08356 hypothetical protein; Provisional
Probab=97.12 E-value=0.00049 Score=54.10 Aligned_cols=25 Identities=20% Similarity=0.089 Sum_probs=21.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.++|.||||+||||+|+.+++ .|.+
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~-~g~~ 31 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEE-KGFC 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence 578999999999999999964 6665
No 451
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.11 E-value=0.00052 Score=53.35 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=22.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+.|+|++||||||+++.+++ +|.++
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~ 26 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV 26 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE
Confidence 67999999999999999998 78764
No 452
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.11 E-value=0.00056 Score=55.98 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEY 74 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~ 74 (162)
-.+++||||+|||.+|-.+|+.+|.|+..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~ 31 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVIS 31 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEE
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEE
Confidence 36889999999999999999999999753
No 453
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.10 E-value=0.00037 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
+.++|+|++|||||||++.+-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999998764
No 454
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.10 E-value=0.0055 Score=53.85 Aligned_cols=90 Identities=18% Similarity=0.247 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCC-cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh--h-
Q psy4122 34 LRWILQKDNMSQ-DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA--I- 109 (162)
Q Consensus 34 L~~i~~~~~~g~-~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~--~- 109 (162)
+.++........ .+++.||-+||||++++.+.........+++.. |....+... .-..+++ .
T Consensus 26 ~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~-d~~~~~~~l-------------~d~~~~~~~~~ 91 (398)
T COG1373 26 LPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEEIIYINFD-DLRLDRIEL-------------LDLLRAYIELK 91 (398)
T ss_pred hHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcceEEEEec-chhcchhhH-------------HHHHHHHHHhh
Confidence 334444444443 689999999999999988887765543334433 211111110 0111111 1
Q ss_pred --cCcEEEEeCCCCCCccHHHHHHHhhcCCe
Q psy4122 110 --EGRVLILEGIEKAERNVLPVLNNLLENRE 138 (162)
Q Consensus 110 --~G~vlllDEId~a~~~v~~~L~~lle~r~ 138 (162)
+...++||||...+. -...|..+.|.+.
T Consensus 92 ~~~~~yifLDEIq~v~~-W~~~lk~l~d~~~ 121 (398)
T COG1373 92 EREKSYIFLDEIQNVPD-WERALKYLYDRGN 121 (398)
T ss_pred ccCCceEEEecccCchh-HHHHHHHHHcccc
Confidence 335899999998655 6777888888776
No 455
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.10 E-value=0.00068 Score=62.16 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 28 QDWLSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
|++.+.|+....... .|..++|+|.+||||||+++.+|..++.
T Consensus 375 peV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 375 PEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred HHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 666666666665443 5567899999999999999999999885
No 456
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0048 Score=54.78 Aligned_cols=113 Identities=12% Similarity=0.075 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCC---hhhhc---cee---E-eecC
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTT---EADIK---QRR---E-IVNG 95 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~---~~dL~---g~~---~-~~~G 95 (162)
+-+-=.+.++.+...+...+..+++-|||+|||.++..+++.++..+..+.-+.+.- ...+. +.. . +.++
T Consensus 37 lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~ 116 (442)
T COG1061 37 LRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYGGG 116 (442)
T ss_pred CcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceecCc
Confidence 445555666666665444678999999999999999999999988854443321110 01111 000 0 1111
Q ss_pred eEEEec--------cHHHHH--hh-----cCcEEEEeCCCCCCccHHHHHHHhhcCCe
Q psy4122 96 TAIYYD--------QSAVRA--AI-----EGRVLILEGIEKAERNVLPVLNNLLENRE 138 (162)
Q Consensus 96 ~~~~~~--------gpl~~A--~~-----~G~vlllDEId~a~~~v~~~L~~lle~r~ 138 (162)
...+.+ ..+.+. +. +-+.||+||+|.++.+....+...+....
T Consensus 117 ~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~ 174 (442)
T COG1061 117 EKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY 174 (442)
T ss_pred eeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccc
Confidence 222221 122221 11 34789999999999877666666555433
No 457
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.09 E-value=0.00097 Score=48.59 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.+.+.|+||+||||++++++.
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999863
No 458
>PRK07667 uridine kinase; Provisional
Probab=97.09 E-value=0.0015 Score=51.51 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=25.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC---CceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~ 78 (162)
-|.+.|++|+||||+++.+++.++ .++..+.+.
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 567889999999999999998764 455555543
No 459
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.08 E-value=0.00038 Score=53.57 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=20.1
Q ss_pred EcCCCchHHHHHHHHHHHhCCc
Q psy4122 50 IGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 50 ~GppG~GKT~La~~lA~~lg~p 71 (162)
+|++||||||+++.++..+|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~ 22 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAA 22 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCe
Confidence 5999999999999999999864
No 460
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.08 E-value=0.00053 Score=58.63 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
++.++|+|++|||||+|++.+++.+|.++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 458999999999999999999999998863
No 461
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.06 E-value=0.00057 Score=60.11 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=25.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+.|.++|++|||||||++.+|+..|.+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 4799999999999999999999988874
No 462
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.0047 Score=56.52 Aligned_cols=83 Identities=8% Similarity=0.129 Sum_probs=45.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccC-CC-hhhhcceeEeecCeEE--EeccHHHH---Hhhc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRD-TT-EADIKQRREIVNGTAI--YYDQSAVR---AAIE 110 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~-~~-~~dL~g~~~~~~G~~~--~~~gpl~~---A~~~ 110 (162)
.|+.+.|+||+|||||+++..+|..+ +..+..+.+... .. ...+......-+=.+. .....+.. .+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 46789999999999999999998653 234444444210 01 1122111001010111 11122333 3455
Q ss_pred CcEEEEeCCCCCCcc
Q psy4122 111 GRVLILEGIEKAERN 125 (162)
Q Consensus 111 G~vlllDEId~a~~~ 125 (162)
..+||||..-+.+.+
T Consensus 429 ~DLVLIDTaG~s~~D 443 (559)
T PRK12727 429 YKLVLIDTAGMGQRD 443 (559)
T ss_pred CCEEEecCCCcchhh
Confidence 689999999876654
No 463
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.06 E-value=0.00053 Score=59.53 Aligned_cols=84 Identities=19% Similarity=0.208 Sum_probs=49.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce-EEEEeccCCC--hhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV-EYICLSRDTT--EADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIE 120 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~-~~v~~~~~~~--~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId 120 (162)
+-++|+|+-|+|||.|-..+-..+..+. .++.+|.-|- -.++.. +. |.....+ ++...+ ++-.+|.+||+.
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~---l~-g~~dpl~-~iA~~~~~~~~vLCfDEF~ 140 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHT---LQ-GQTDPLP-PIADELAAETRVLCFDEFE 140 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHH---Hc-CCCCccH-HHHHHHHhcCCEEEeeeee
Confidence 4599999999999999999988875543 4455542221 111111 11 3332111 333333 566899999995
Q ss_pred C---CCccHHHHHHHh
Q psy4122 121 K---AERNVLPVLNNL 133 (162)
Q Consensus 121 ~---a~~~v~~~L~~l 133 (162)
- ++.-.+..|.+.
T Consensus 141 VtDI~DAMiL~rL~~~ 156 (367)
T COG1485 141 VTDIADAMILGRLLEA 156 (367)
T ss_pred ecChHHHHHHHHHHHH
Confidence 5 444455555543
No 464
>KOG0732|consensus
Probab=97.06 E-value=0.0011 Score=64.43 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=55.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccH-------HHHHh-hcCcEEEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS-------AVRAA-IEGRVLIL 116 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp-------l~~A~-~~G~vlll 116 (162)
+-+|+.||||+|||..|+++|...-.--..+...-.- -+|.. ..|+.-+ +-.|- ....+++.
T Consensus 300 rgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk-gaD~l---------skwvgEaERqlrllFeeA~k~qPSIIff 369 (1080)
T KOG0732|consen 300 RGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK-GADCL---------SKWVGEAERQLRLLFEEAQKTQPSIIFF 369 (1080)
T ss_pred cceeecCCCCCchhHHHHhhhhhhcccccccchhhhc-Cchhh---------ccccCcHHHHHHHHHHHHhccCceEEec
Confidence 4599999999999999999998876655555443111 11221 1222111 12232 23478999
Q ss_pred eCCCC-----------CCccHHHHHHHhhc----CCeEEEc
Q psy4122 117 EGIEK-----------AERNVLPVLNNLLE----NREMHLE 142 (162)
Q Consensus 117 DEId~-----------a~~~v~~~L~~lle----~r~l~l~ 142 (162)
|||+- .+.++.+-|+.+|+ ++++++.
T Consensus 370 deIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvi 410 (1080)
T KOG0732|consen 370 DEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVI 410 (1080)
T ss_pred cccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEE
Confidence 99993 33467888888888 4566553
No 465
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0058 Score=55.25 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhc--ce-eEeecCeEEEecc
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIK--QR-REIVNGTAIYYDQ 102 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~--g~-~~~~~G~~~~~~g 102 (162)
.++.....++.++..- .| -+|++||+|+|||+....+...++.+..-+..-+| +-++. |- ..-.+.+....-.
T Consensus 242 ~~~~~~~~~~~~~~~p-~G-liLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiED--PVE~~~~gI~Q~qVN~k~gltfa 317 (500)
T COG2804 242 MSPFQLARLLRLLNRP-QG-LILVTGPTGSGKTTTLYAALSELNTPERNIITIED--PVEYQLPGINQVQVNPKIGLTFA 317 (500)
T ss_pred CCHHHHHHHHHHHhCC-Ce-EEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeC--CeeeecCCcceeecccccCCCHH
Confidence 4677777777776521 12 57888999999999999998888877653222223 22221 10 0111222111122
Q ss_pred HHHHHh-hc-CcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 103 SAVRAA-IE-GRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 103 pl~~A~-~~-G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
..++|+ |+ ..++.+.||. ..++....-+....|.+++.
T Consensus 318 ~~LRa~LRqDPDvImVGEIR--D~ETAeiavqAalTGHLVlS 357 (500)
T COG2804 318 RALRAILRQDPDVIMVGEIR--DLETAEIAVQAALTGHLVLS 357 (500)
T ss_pred HHHHHHhccCCCeEEEeccC--CHHHHHHHHHHHhcCCeEee
Confidence 455665 44 5799999996 44555555566667887764
No 466
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.05 E-value=0.00047 Score=55.20 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=54.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCcc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERN 125 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~ 125 (162)
.++|+|+.|+|||+..+.++... +. +. +.. . .+.....++....++.+||++.....
T Consensus 54 ~lvl~G~QG~GKStf~~~L~~~~------~~---d~----~~~---~-------~~kd~~~~l~~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 54 VLVLVGKQGIGKSTFFRKLGPEY------FS---DS----IND---F-------DDKDFLEQLQGKWIVELDELDGLSKK 110 (198)
T ss_pred eeeEecCCcccHHHHHHHHhHHh------cc---Cc----ccc---C-------CCcHHHHHHHHhHheeHHHHhhcchh
Confidence 47889999999999999885441 10 10 000 0 01123445556667789999999998
Q ss_pred HHHHHHHhhcCCeEEE--cCCcEEecCc
Q psy4122 126 VLPVLNNLLENREMHL--EDGRFLVSAS 151 (162)
Q Consensus 126 v~~~L~~lle~r~l~l--~~g~~i~~~~ 151 (162)
-.+.|.+++-.....+ |-|+.....+
T Consensus 111 ~~~~lK~~iT~~~~~~R~pY~~~~~~~~ 138 (198)
T PF05272_consen 111 DVEALKSFITRRTDTYRPPYGRDPEEFP 138 (198)
T ss_pred hHHHHHHHhcccceeeecCCcCcceeec
Confidence 8999999998766544 3354444333
No 467
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.05 E-value=0.0015 Score=54.90 Aligned_cols=56 Identities=14% Similarity=0.046 Sum_probs=37.3
Q ss_pred HHHHHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHHHh---------CCceEEEEeccCCChhhh
Q psy4122 31 LSHLRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLELT---------QREVEYICLSRDTTEADI 86 (162)
Q Consensus 31 ~~~L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~~l---------g~p~~~v~~~~~~~~~dL 86 (162)
...+..++.. +..|.-+.++||||||||+++.++|... +..+.++......++..+
T Consensus 81 ~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl 146 (310)
T TIGR02236 81 SKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERI 146 (310)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHH
Confidence 3445555553 3356667899999999999999998653 235666666544455444
No 468
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.04 E-value=0.0011 Score=53.35 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEec
Q psy4122 29 DWLSHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLS 78 (162)
Q Consensus 29 ~~~~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~ 78 (162)
+.+.-|-.++. .+..|.-+++.|+||+|||+++.+++.. .|.++.++.+.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 33445556664 3345667899999999999999999743 47788888774
No 469
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.04 E-value=0.00045 Score=50.48 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.3
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+.+.++|+.|||||+|.+.++....
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3578899999999999999999987654
No 470
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.04 E-value=0.0029 Score=59.51 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
|+++--.+..|+.+-++|+.|||||||++.+.....
T Consensus 489 L~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred hhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 444444566799999999999999999999997654
No 471
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.04 E-value=0.00067 Score=54.87 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=24.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+.+.||+||||||+++.+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4789999999999999999999997643
No 472
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.04 E-value=0.00048 Score=54.98 Aligned_cols=30 Identities=13% Similarity=0.126 Sum_probs=26.0
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+...|+.+.++||.|||||+|.+++|.+..
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 345688999999999999999999997764
No 473
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.04 E-value=0.00072 Score=57.19 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=23.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
++++||||+|||+|+..+|+.++.++
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~i 27 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEI 27 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcE
Confidence 68999999999999999999988653
No 474
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.03 E-value=0.00069 Score=53.75 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=25.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+.++|++|||||++++.+++.+|.++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i 30 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL 30 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe
Confidence 4889999999999999999998888753
No 475
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.03 E-value=0.0064 Score=48.69 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=30.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH---HhCCceEEEEecc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLE---LTQREVEYICLSR 79 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~~ 79 (162)
...++++|++|.||||.|..+|- ..|.++..+++-.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 45899999999999999998773 4588888888864
No 476
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.03 E-value=0.0015 Score=55.34 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHHHh---------CCceEEEEeccCCChhhhc
Q psy4122 29 DWLSHLRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLELT---------QREVEYICLSRDTTEADIK 87 (162)
Q Consensus 29 ~~~~~L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~~l---------g~p~~~v~~~~~~~~~dL~ 87 (162)
+....+..++.. +..|.-+.++||||||||+++.++|... +..+.++.+....+++.|.
T Consensus 86 Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~ 154 (317)
T PRK04301 86 TGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE 154 (317)
T ss_pred CCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH
Confidence 344556666653 4466678899999999999999998653 3356667665544454443
No 477
>KOG0927|consensus
Probab=97.03 E-value=0.0017 Score=59.34 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=39.2
Q ss_pred HhhcCcEEEEeCC-CCCCccHHHHHHHhhcCCeEEEcCCcEEecCcchHhhhhhh
Q psy4122 107 AAIEGRVLILEGI-EKAERNVLPVLNNLLENREMHLEDGRFLVSASTYDKLLQVE 160 (162)
Q Consensus 107 A~~~G~vlllDEI-d~a~~~v~~~L~~lle~r~l~l~~g~~i~~~~~f~~~~~~~ 160 (162)
|++..++|+|||- |...-+..+.|...|.+ -+|..|..-++|+.+.|+.
T Consensus 524 ~~kqP~lLlLDEPtnhLDi~tid~laeaiNe-----~~Ggvv~vSHDfrlI~qVa 573 (614)
T KOG0927|consen 524 AVKQPHLLLLDEPTNHLDIETIDALAEAINE-----FPGGVVLVSHDFRLISQVA 573 (614)
T ss_pred HhcCCcEEEecCCCcCCCchhHHHHHHHHhc-----cCCceeeeechhhHHHHHH
Confidence 4577899999998 77888889999988864 2466777777899999975
No 478
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.02 E-value=0.0018 Score=57.66 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
.++++|++|+|||+++..+|..+ |+.+..+.+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 58999999999999999998765 455555544
No 479
>PRK13973 thymidylate kinase; Provisional
Probab=97.01 E-value=0.0012 Score=52.87 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=31.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADI 86 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL 86 (162)
|.=+.+.|..||||||.++.+++.+ |.++.......++...++
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ 48 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEA 48 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHH
Confidence 4557889999999999999999988 777655544444334443
No 480
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0005 Score=59.41 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=25.2
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.+..|+-+.|.||.||||||+.+.+|.+..
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344578899999999999999999996643
No 481
>PRK06761 hypothetical protein; Provisional
Probab=97.00 E-value=0.00099 Score=56.22 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=25.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYI 75 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v 75 (162)
+-+++.|+|||||||+++.+++.++.....+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 4588999999999999999999887544333
No 482
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.00 E-value=0.0016 Score=58.57 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHH--H-h-CCceEEEEeccCCChhhhc
Q psy4122 27 TQDWLSHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLE--L-T-QREVEYICLSRDTTEADIK 87 (162)
Q Consensus 27 ~~~~~~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~--~-l-g~p~~~v~~~~~~~~~dL~ 87 (162)
-++.+.-|-.++. .+..|..+++.|+||+|||+++.+++. + . |.++.++++. .+.++++
T Consensus 13 i~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~e--e~~~~i~ 76 (509)
T PRK09302 13 LPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFE--ESPEDII 76 (509)
T ss_pred ccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEcc--CCHHHHH
Confidence 4566777777875 455688899999999999999999874 2 2 6788888774 3455544
No 483
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.00 E-value=0.00098 Score=53.57 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=19.4
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA 65 (162)
+-++|+||.|+|||++.+.++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 458999999999999999988
No 484
>PLN03130 ABC transporter C family member; Provisional
Probab=97.00 E-value=0.0031 Score=64.07 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.|+.+--....|+.+-++|++|+|||||++.+.+..
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 355666667789999999999999999999999765
No 485
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.99 E-value=0.00025 Score=59.16 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=26.4
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+...|+-+.|.||.|||||||.+.++..+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 445688999999999999999999998775
No 486
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.99 E-value=0.00064 Score=50.73 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
+++++|++|||||+|++++....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc
Confidence 48899999999999999987654
No 487
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.98 E-value=0.0021 Score=49.17 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=20.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l 68 (162)
...+++||.|+|||++.++++-..
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999987544
No 488
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.98 E-value=0.0012 Score=53.84 Aligned_cols=56 Identities=18% Similarity=0.250 Sum_probs=35.1
Q ss_pred HHHHHHHHHhc-CCCCcEEEEcCCCchHHHHHHHHHHH--hCCce---EEEEeccCCChhhh
Q psy4122 31 LSHLRWILQKD-NMSQDVFLIGKPGSLRRSLAMSYLEL--TQREV---EYICLSRDTTEADI 86 (162)
Q Consensus 31 ~~~L~~i~~~~-~~g~~vlL~GppG~GKT~La~~lA~~--lg~p~---~~v~~~~~~~~~dL 86 (162)
++.+.+.+... ...+.+.|+|++|+|||+||.++++. ....+ ..+.+....+..++
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~ 66 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQL 66 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccc
Confidence 44444444442 23447899999999999999999966 44433 34556554444443
No 489
>PRK06851 hypothetical protein; Provisional
Probab=96.98 E-value=0.0013 Score=57.39 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCC
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDT 81 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~ 81 (162)
.+.+..++.. ..+-++|.|+||||||++++.++... |..+.++.|..+-
T Consensus 203 ~s~~~~l~~~--~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dP 254 (367)
T PRK06851 203 VDFVPSLTEG--VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDP 254 (367)
T ss_pred HhhHHhHhcc--cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 3344455532 23468999999999999999998765 8888888887553
No 490
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.98 E-value=0.00067 Score=54.06 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=23.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
.++|+||+|+||||.+-.+|+.+ ++.+..+++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 57999999999999998888544 555555555
No 491
>KOG0922|consensus
Probab=96.98 E-value=0.0029 Score=58.63 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=58.5
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceE-EEEecc-----CCC------------hhhhcc-eeEe
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVE-YICLSR-----DTT------------EADIKQ-RREI 92 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~-~v~~~~-----~~~------------~~dL~g-~~~~ 92 (162)
+.-..|+......+.++++|++||||||=+-++...-|..-. .+.|.. -++ ..+.+| ...+
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF 133 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF 133 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe
Confidence 333455555555778999999999999988887765554321 122210 001 111122 1112
Q ss_pred ec---Ce---EEEeccHHHHHhh------cCcEEEEeCCCC--CCccHHHH-HHHhhcCC
Q psy4122 93 VN---GT---AIYYDQSAVRAAI------EGRVLILEGIEK--AERNVLPV-LNNLLENR 137 (162)
Q Consensus 93 ~~---G~---~~~~~gpl~~A~~------~G~vlllDEId~--a~~~v~~~-L~~lle~r 137 (162)
++ .+ -...||-|++-+. +=.+++|||.|. .+.|++-. |..++.+|
T Consensus 134 ed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R 193 (674)
T KOG0922|consen 134 EDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR 193 (674)
T ss_pred cccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC
Confidence 11 22 2346788776543 227999999976 55565444 44455443
No 492
>KOG0736|consensus
Probab=96.98 E-value=0.00097 Score=63.02 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=31.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
.+||.|+||||||++++.+|..+|.++..+.|+
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~ 465 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCY 465 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCceEeccHH
Confidence 489999999999999999999999999988887
No 493
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.98 E-value=0.00086 Score=56.10 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHhC
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg 69 (162)
++|.|-||+|||++|+.++..+.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHH
Confidence 67889999999999999998753
No 494
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.96 E-value=0.0012 Score=51.26 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
|.-++|+|-+|+|||+||+++.+.+ |++++.+-.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecC
Confidence 3458999999999999999999765 677665533
No 495
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.96 E-value=0.0014 Score=51.91 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=36.4
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh---C------CceEEEEeccCCChhhh
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT---Q------REVEYICLSRDTTEADI 86 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l---g------~p~~~v~~~~~~~~~dL 86 (162)
..|-.++. .+..|+-+.|.||||||||+++.++|... + ..+.++..........+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 34445554 34567789999999999999999998643 2 45555655443344343
No 496
>PRK13808 adenylate kinase; Provisional
Probab=96.95 E-value=0.00078 Score=58.10 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.++|.||||+|||++++.+|..+|.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~ 28 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQ 28 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 489999999999999999999998764
No 497
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.94 E-value=0.0048 Score=47.96 Aligned_cols=34 Identities=9% Similarity=-0.008 Sum_probs=27.2
Q ss_pred cEEEEcCCCchHHHHHHHHH---HHhCCceEEEEecc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYL---ELTQREVEYICLSR 79 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA---~~lg~p~~~v~~~~ 79 (162)
-+.+++++|.||||+|..+| ...|..+..+++-.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlK 40 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLK 40 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeC
Confidence 46778888999999999877 34588888888763
No 498
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.94 E-value=0.0011 Score=43.94 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|...+|.||.|+|||+|..++...+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999988665
No 499
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.94 E-value=0.00088 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
+.+.|++||||||+++.+++.++..
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~ 26 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYE 26 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6789999999999999999887754
No 500
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.93 E-value=0.0022 Score=62.82 Aligned_cols=111 Identities=10% Similarity=0.129 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChh-hhc---c--eeEeecC
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEA-DIK---Q--RREIVNG 95 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~-dL~---g--~~~~~~G 95 (162)
.+++.=.+.++.+. ..+.-.+++|++|||||++.+.+.+. .|+.+.-+..+ -... .|- | ..++..=
T Consensus 381 ~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApT--gkAA~~L~e~~Gi~a~TIas~ 455 (1102)
T PRK13826 381 RLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALA--GKAAEGLEKEAGIQSRTLSSW 455 (1102)
T ss_pred CCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc--HHHHHHHHHhhCCCeeeHHHH
Confidence 46666666666654 22456899999999999999988764 46554332221 1122 221 1 0011000
Q ss_pred eEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC--CeEEEc
Q psy4122 96 TAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN--REMHLE 142 (162)
Q Consensus 96 ~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~--r~l~l~ 142 (162)
...|..+. ..+..+.+||+||...++...+..|....+. -.+.+-
T Consensus 456 ll~~~~~~--~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLV 502 (1102)
T PRK13826 456 ELRWNQGR--DQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLV 502 (1102)
T ss_pred HhhhccCc--cCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEE
Confidence 01222221 1234567999999999999999998888863 355554
Done!