Query psy4122
Match_columns 162
No_of_seqs 113 out of 1063
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:32:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r44_A Uncharacterized protein 99.7 8.2E-18 2.8E-22 139.1 11.0 94 44-142 46-141 (331)
2 4akg_A Glutathione S-transfera 99.6 8.3E-15 2.8E-19 149.0 11.0 123 20-156 621-751 (2695)
3 3n70_A Transport activator; si 99.5 2.7E-14 9.3E-19 105.8 9.9 94 27-137 7-103 (145)
4 2bjv_A PSP operon transcriptio 99.5 3.5E-14 1.2E-18 113.9 10.8 111 27-139 12-129 (265)
5 3pfi_A Holliday junction ATP-d 99.5 7.3E-14 2.5E-18 115.3 10.8 100 27-141 34-137 (338)
6 3f9v_A Minichromosome maintena 99.5 6.5E-15 2.2E-19 132.7 4.7 93 46-142 329-423 (595)
7 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.3E-14 7.7E-19 127.1 7.8 101 37-142 34-141 (500)
8 4fcw_A Chaperone protein CLPB; 99.5 2E-14 6.8E-19 116.9 6.5 112 28-142 23-151 (311)
9 1g8p_A Magnesium-chelatase 38 99.5 5.5E-14 1.9E-18 115.8 7.0 97 44-142 45-176 (350)
10 1r6b_X CLPA protein; AAA+, N-t 99.5 7.6E-14 2.6E-18 127.5 7.8 97 46-145 490-592 (758)
11 1hqc_A RUVB; extended AAA-ATPa 99.5 2.2E-13 7.4E-18 111.3 9.6 101 27-141 17-121 (324)
12 3co5_A Putative two-component 99.4 4E-14 1.4E-18 104.8 4.2 88 32-137 14-102 (143)
13 1ofh_A ATP-dependent HSL prote 99.4 5.5E-13 1.9E-17 107.7 10.0 97 43-141 49-159 (310)
14 1ojl_A Transcriptional regulat 99.4 4.6E-13 1.6E-17 110.9 9.6 111 27-139 8-125 (304)
15 1um8_A ATP-dependent CLP prote 99.4 3.1E-13 1.1E-17 113.8 8.4 89 44-142 72-183 (376)
16 3hws_A ATP-dependent CLP prote 99.4 1.5E-14 5.2E-19 121.5 -0.5 90 43-142 50-162 (363)
17 3f8t_A Predicted ATPase involv 99.4 6.3E-13 2.2E-17 117.6 9.7 93 46-145 241-334 (506)
18 1qvr_A CLPB protein; coiled co 99.4 3.1E-13 1.1E-17 125.5 7.9 93 46-141 590-691 (854)
19 3pxi_A Negative regulator of g 99.4 5.3E-13 1.8E-17 122.3 8.2 86 46-144 523-613 (758)
20 4akg_A Glutathione S-transfera 99.4 1.1E-12 3.8E-17 133.6 9.5 129 27-159 906-1052(2695)
21 3pvs_A Replication-associated 99.3 2.7E-12 9.2E-17 112.0 9.1 94 32-141 39-137 (447)
22 3vkg_A Dynein heavy chain, cyt 99.3 4.2E-12 1.4E-16 130.6 11.6 123 18-154 578-709 (3245)
23 3vkg_A Dynein heavy chain, cyt 99.3 1.3E-12 4.5E-17 134.2 5.2 130 26-156 1286-1426(3245)
24 3k1j_A LON protease, ATP-depen 99.2 1E-11 3.6E-16 111.4 7.7 110 28-142 47-233 (604)
25 3syl_A Protein CBBX; photosynt 99.2 7E-12 2.4E-16 101.8 5.6 85 43-137 66-166 (309)
26 3m6a_A ATP-dependent protease 99.2 3.2E-12 1.1E-16 113.8 3.8 92 43-137 107-206 (543)
27 3u61_B DNA polymerase accessor 99.2 4.3E-11 1.5E-15 98.2 10.1 97 25-136 29-132 (324)
28 2qz4_A Paraplegin; AAA+, SPG7, 99.2 6.2E-11 2.1E-15 93.7 10.3 87 28-122 12-110 (262)
29 2chg_A Replication factor C sm 99.2 7.4E-11 2.5E-15 89.3 10.3 98 27-136 22-128 (226)
30 3t15_A Ribulose bisphosphate c 99.2 8.3E-12 2.8E-16 102.7 4.9 85 45-137 37-139 (293)
31 2p65_A Hypothetical protein PF 99.2 1.6E-11 5.5E-16 91.2 5.7 102 28-139 28-153 (187)
32 3h4m_A Proteasome-activating n 99.2 4.3E-11 1.5E-15 96.3 8.6 101 27-135 22-146 (285)
33 3bos_A Putative DNA replicatio 99.2 7.1E-11 2.4E-15 91.3 9.2 91 27-135 36-131 (242)
34 1jbk_A CLPB protein; beta barr 99.2 2.6E-11 8.8E-16 89.9 6.4 104 28-139 28-152 (195)
35 3uk6_A RUVB-like 2; hexameric 99.2 6.6E-11 2.3E-15 98.3 8.7 35 43-77 69-105 (368)
36 1in4_A RUVB, holliday junction 99.2 1.6E-10 5.5E-15 96.3 10.9 96 28-138 31-130 (334)
37 3dzd_A Transcriptional regulat 99.2 1.1E-10 3.7E-15 99.3 9.4 115 27-143 135-255 (368)
38 1njg_A DNA polymerase III subu 99.1 1.6E-10 5.6E-15 88.1 8.9 110 27-136 28-152 (250)
39 1ny5_A Transcriptional regulat 99.1 5.7E-11 1.9E-15 101.4 6.7 113 27-141 143-262 (387)
40 1l8q_A Chromosomal replication 99.1 1.1E-10 3.7E-15 96.1 7.4 99 28-134 20-124 (324)
41 3vfd_A Spastin; ATPase, microt 99.1 2.9E-11 9.9E-16 102.6 4.0 100 28-135 121-243 (389)
42 3ec2_A DNA replication protein 99.1 8.8E-11 3E-15 88.9 6.2 99 29-135 21-127 (180)
43 2v1u_A Cell division control p 99.1 1.6E-10 5.6E-15 95.3 8.0 108 28-135 25-157 (387)
44 3eie_A Vacuolar protein sortin 99.1 1.1E-10 3.7E-15 96.7 5.9 101 27-135 23-146 (322)
45 3d8b_A Fidgetin-like protein 1 99.1 4.1E-10 1.4E-14 94.8 9.3 101 28-136 90-213 (357)
46 1d2n_A N-ethylmaleimide-sensit 99.1 1.8E-10 6.3E-15 92.5 6.7 85 44-136 64-160 (272)
47 3b9p_A CG5977-PA, isoform A; A 99.0 3.3E-10 1.1E-14 91.7 7.4 90 27-124 26-127 (297)
48 1sxj_D Activator 1 41 kDa subu 99.0 3.3E-10 1.1E-14 93.0 7.3 109 28-137 43-160 (353)
49 1fnn_A CDC6P, cell division co 99.0 1.3E-09 4.6E-14 90.2 10.5 109 28-136 23-151 (389)
50 2qp9_X Vacuolar protein sortin 99.0 8.1E-10 2.8E-14 93.1 9.1 84 44-135 84-179 (355)
51 3cf0_A Transitional endoplasmi 99.0 1.2E-09 4E-14 89.8 9.7 100 28-135 21-147 (301)
52 4b4t_J 26S protease regulatory 99.0 3.2E-10 1.1E-14 98.3 6.2 73 43-123 181-254 (405)
53 1sxj_A Activator 1 95 kDa subu 99.0 5.7E-10 1.9E-14 98.3 7.9 109 27-137 44-178 (516)
54 1iqp_A RFCS; clamp loader, ext 99.0 6.8E-10 2.3E-14 89.9 7.8 102 27-136 30-136 (327)
55 1jr3_A DNA polymerase III subu 99.0 2E-09 6.8E-14 89.0 10.5 107 27-136 21-145 (373)
56 2w58_A DNAI, primosome compone 99.0 6.1E-10 2.1E-14 85.4 6.7 98 30-135 37-143 (202)
57 1xwi_A SKD1 protein; VPS4B, AA 99.0 2E-09 7E-14 89.5 10.2 88 28-123 18-118 (322)
58 2chq_A Replication factor C sm 99.0 3.9E-10 1.3E-14 91.0 5.5 98 27-136 22-128 (319)
59 4b4t_L 26S protease subunit RP 99.0 6.9E-10 2.3E-14 97.0 7.1 73 43-123 214-287 (437)
60 2r62_A Cell division protease 99.0 2E-10 6.7E-15 91.8 3.2 75 43-125 43-118 (268)
61 3hu3_A Transitional endoplasmi 99.0 7E-10 2.4E-14 97.9 7.0 100 28-135 210-333 (489)
62 3te6_A Regulatory protein SIR3 99.0 7.6E-10 2.6E-14 93.0 6.9 91 43-135 44-155 (318)
63 2z4s_A Chromosomal replication 99.0 8.9E-10 3E-14 95.6 7.5 99 28-134 114-220 (440)
64 1sxj_B Activator 1 37 kDa subu 99.0 1E-09 3.5E-14 88.7 7.1 94 27-136 26-133 (323)
65 2kjq_A DNAA-related protein; s 99.0 2E-09 7E-14 80.5 8.0 82 27-135 24-108 (149)
66 2ce7_A Cell division protein F 98.9 5E-09 1.7E-13 92.3 10.9 90 28-125 22-123 (476)
67 2qby_B CDC6 homolog 3, cell di 98.9 2.9E-09 1E-13 88.3 8.3 109 28-136 26-161 (384)
68 1lv7_A FTSH; alpha/beta domain 98.9 3.9E-09 1.3E-13 83.9 8.6 35 44-78 45-79 (257)
69 2zan_A Vacuolar protein sortin 98.9 2.5E-09 8.5E-14 92.8 7.7 89 28-124 140-241 (444)
70 4b4t_M 26S protease regulatory 98.9 7.6E-10 2.6E-14 96.7 3.9 72 43-122 214-286 (434)
71 1a5t_A Delta prime, HOLB; zinc 98.9 9.3E-09 3.2E-13 85.6 10.4 107 28-137 8-135 (334)
72 2qgz_A Helicase loader, putati 98.9 1.5E-09 5E-14 90.1 5.1 84 30-121 136-225 (308)
73 4b4t_I 26S protease regulatory 98.9 1.2E-09 4.1E-14 95.5 4.2 73 43-123 215-288 (437)
74 1qvr_A CLPB protein; coiled co 98.9 2.2E-09 7.6E-14 99.7 6.1 105 28-140 176-301 (854)
75 1sxj_C Activator 1 40 kDa subu 98.9 9.5E-09 3.2E-13 85.2 9.3 98 27-136 30-136 (340)
76 2qby_A CDC6 homolog 1, cell di 98.9 6.9E-09 2.4E-13 85.3 8.3 107 28-135 26-157 (386)
77 4b4t_K 26S protease regulatory 98.8 1.3E-09 4.4E-14 95.0 4.0 71 43-121 205-276 (428)
78 4b4t_H 26S protease regulatory 98.8 1.6E-09 5.6E-14 95.3 4.5 74 42-123 241-315 (467)
79 2c9o_A RUVB-like 1; hexameric 98.8 3.4E-09 1.2E-13 91.9 5.6 88 28-124 43-140 (456)
80 2gno_A DNA polymerase III, gam 98.8 1.3E-08 4.5E-13 84.6 8.5 92 29-136 4-108 (305)
81 3pxg_A Negative regulator of g 98.8 4.4E-09 1.5E-13 91.8 5.6 97 28-141 186-294 (468)
82 1g41_A Heat shock protein HSLU 98.8 3E-08 1E-12 86.8 10.6 35 44-78 50-84 (444)
83 1r6b_X CLPA protein; AAA+, N-t 98.8 3.6E-09 1.2E-13 96.6 4.3 107 28-140 192-317 (758)
84 3cf2_A TER ATPase, transitiona 98.7 4.7E-09 1.6E-13 97.8 3.7 72 44-124 238-311 (806)
85 3pxi_A Negative regulator of g 98.7 1.8E-08 6.1E-13 92.3 5.6 98 27-141 185-294 (758)
86 2dhr_A FTSH; AAA+ protein, hex 98.6 2.6E-07 9E-12 81.8 11.9 52 27-78 36-98 (499)
87 1ypw_A Transitional endoplasmi 98.6 4.3E-08 1.5E-12 91.0 7.1 86 41-135 235-333 (806)
88 2x8a_A Nuclear valosin-contain 98.6 2E-07 7E-12 75.9 9.6 35 43-77 43-77 (274)
89 1tue_A Replication protein E1; 98.6 3.5E-08 1.2E-12 78.8 4.6 92 29-141 43-135 (212)
90 2orw_A Thymidine kinase; TMTK, 98.6 1.5E-07 5E-12 72.6 7.7 95 44-142 3-108 (184)
91 1sxj_E Activator 1 40 kDa subu 98.6 1.4E-07 4.8E-12 77.6 7.8 41 27-68 19-60 (354)
92 3cf2_A TER ATPase, transitiona 98.5 3.6E-08 1.2E-12 91.8 4.3 71 45-123 512-583 (806)
93 2qen_A Walker-type ATPase; unk 98.5 3.7E-07 1.3E-11 74.1 8.1 46 28-78 18-63 (350)
94 1ypw_A Transitional endoplasmi 98.5 1.5E-08 5.3E-13 93.9 -0.4 36 43-78 510-545 (806)
95 1w5s_A Origin recognition comp 98.5 1.9E-07 6.5E-12 77.9 6.1 91 44-135 50-169 (412)
96 2fna_A Conserved hypothetical 98.5 8.9E-07 3E-11 71.8 9.6 35 45-79 31-65 (357)
97 3upu_A ATP-dependent DNA helic 98.3 1.7E-06 5.8E-11 74.8 9.1 116 25-141 25-160 (459)
98 2vhj_A Ntpase P4, P4; non- hyd 98.3 9.5E-07 3.2E-11 74.7 6.3 75 41-124 120-196 (331)
99 2b8t_A Thymidine kinase; deoxy 98.2 4.8E-06 1.6E-10 66.5 9.2 95 43-137 11-116 (223)
100 1ye8_A Protein THEP1, hypothet 98.2 9.7E-06 3.3E-10 62.0 9.7 26 46-71 2-27 (178)
101 1ixz_A ATP-dependent metallopr 98.2 2.3E-06 7.8E-11 67.7 6.2 34 44-77 49-82 (254)
102 3vaa_A Shikimate kinase, SK; s 98.2 1.5E-06 5E-11 66.7 4.5 31 43-73 24-54 (199)
103 1qhx_A CPT, protein (chloramph 98.2 2.2E-06 7.4E-11 63.8 5.0 33 44-76 3-35 (178)
104 3trf_A Shikimate kinase, SK; a 98.1 1.6E-06 5.5E-11 65.1 4.3 30 44-73 5-34 (185)
105 1iy2_A ATP-dependent metallopr 98.1 5.1E-06 1.7E-10 66.8 7.5 50 28-77 46-106 (278)
106 3jvv_A Twitching mobility prot 98.1 9.1E-06 3.1E-10 68.9 8.9 104 33-141 114-225 (356)
107 1kag_A SKI, shikimate kinase I 98.1 2.7E-06 9.2E-11 63.0 4.4 28 44-71 4-31 (173)
108 1zuh_A Shikimate kinase; alpha 98.1 2.6E-06 8.8E-11 63.2 4.2 29 45-73 8-36 (168)
109 3kb2_A SPBC2 prophage-derived 98.0 3.5E-06 1.2E-10 61.9 4.3 28 46-73 3-30 (173)
110 2pt7_A CAG-ALFA; ATPase, prote 98.0 8.3E-06 2.9E-10 68.2 7.2 90 42-135 169-263 (330)
111 2i3b_A HCR-ntpase, human cance 98.0 9.4E-06 3.2E-10 62.8 6.9 25 44-68 1-25 (189)
112 2fz4_A DNA repair protein RAD2 98.0 2.2E-05 7.4E-10 62.3 8.7 110 25-138 93-220 (237)
113 1via_A Shikimate kinase; struc 98.0 4E-06 1.4E-10 62.6 4.1 28 46-73 6-33 (175)
114 2iyv_A Shikimate kinase, SK; t 98.0 4.9E-06 1.7E-10 62.4 4.5 29 45-73 3-31 (184)
115 1u0j_A DNA replication protein 98.0 2.3E-05 7.7E-10 64.4 8.5 89 31-142 90-179 (267)
116 3iij_A Coilin-interacting nucl 98.0 6.2E-06 2.1E-10 61.7 4.4 29 44-72 11-39 (180)
117 1xx6_A Thymidine kinase; NESG, 98.0 3E-05 1E-09 60.3 8.2 96 43-138 7-109 (191)
118 2rhm_A Putative kinase; P-loop 97.9 6.7E-06 2.3E-10 61.6 4.1 29 44-72 5-33 (193)
119 3cm0_A Adenylate kinase; ATP-b 97.9 4.7E-06 1.6E-10 62.4 3.2 29 44-72 4-32 (186)
120 1e6c_A Shikimate kinase; phosp 97.9 7.6E-06 2.6E-10 60.4 4.1 29 45-73 3-31 (173)
121 3e1s_A Exodeoxyribonuclease V, 97.9 1.5E-05 5E-10 71.5 6.7 108 25-141 189-311 (574)
122 2bwj_A Adenylate kinase 5; pho 97.9 4.5E-06 1.5E-10 62.9 2.7 29 44-72 12-40 (199)
123 1y63_A LMAJ004144AAA protein; 97.9 6.2E-06 2.1E-10 62.5 3.5 31 43-73 9-40 (184)
124 2qor_A Guanylate kinase; phosp 97.9 1.9E-05 6.4E-10 60.6 6.2 27 43-69 11-37 (204)
125 1knq_A Gluconate kinase; ALFA/ 97.9 6.6E-06 2.2E-10 61.2 3.3 29 43-71 7-35 (175)
126 2c95_A Adenylate kinase 1; tra 97.9 8.9E-06 3E-10 61.1 4.0 29 44-72 9-37 (196)
127 2cdn_A Adenylate kinase; phosp 97.9 1.1E-05 3.6E-10 61.6 4.4 29 44-72 20-48 (201)
128 1kht_A Adenylate kinase; phosp 97.9 7.2E-06 2.4E-10 61.2 3.4 26 44-69 3-28 (192)
129 3lw7_A Adenylate kinase relate 97.9 8.6E-06 2.9E-10 59.3 3.7 27 46-73 3-29 (179)
130 1zp6_A Hypothetical protein AT 97.9 7.1E-06 2.4E-10 61.6 3.3 32 41-72 6-37 (191)
131 3nwj_A ATSK2; P loop, shikimat 97.9 1.1E-05 3.9E-10 65.1 4.6 41 33-73 34-77 (250)
132 2cvh_A DNA repair and recombin 97.9 2.4E-05 8.3E-10 59.6 6.2 55 32-86 7-62 (220)
133 2vli_A Antibiotic resistance p 97.9 7.2E-06 2.5E-10 61.1 3.1 30 44-73 5-34 (183)
134 4eun_A Thermoresistant glucoki 97.8 1.1E-05 3.8E-10 61.7 4.1 29 43-71 28-56 (200)
135 1tev_A UMP-CMP kinase; ploop, 97.8 9.5E-06 3.3E-10 60.6 3.6 28 45-72 4-31 (196)
136 1aky_A Adenylate kinase; ATP:A 97.8 1.1E-05 3.9E-10 62.3 4.1 29 44-72 4-32 (220)
137 2eyu_A Twitching motility prot 97.8 6.1E-05 2.1E-09 60.9 8.6 35 33-69 16-50 (261)
138 2pt5_A Shikimate kinase, SK; a 97.8 1.5E-05 5E-10 58.7 4.1 28 46-73 2-29 (168)
139 3t61_A Gluconokinase; PSI-biol 97.8 1.5E-05 5.1E-10 60.8 4.2 28 45-72 19-46 (202)
140 1zak_A Adenylate kinase; ATP:A 97.8 1.5E-05 5.3E-10 61.7 4.2 28 44-71 5-32 (222)
141 3fb4_A Adenylate kinase; psych 97.8 1.5E-05 5.1E-10 61.2 4.1 28 46-73 2-29 (216)
142 3dl0_A Adenylate kinase; phosp 97.8 1.4E-05 4.7E-10 61.5 3.9 28 46-73 2-29 (216)
143 1qf9_A UMP/CMP kinase, protein 97.8 1.5E-05 5E-10 59.4 3.8 28 45-72 7-34 (194)
144 3tlx_A Adenylate kinase 2; str 97.8 3E-05 1E-09 61.6 5.8 30 43-72 28-57 (243)
145 2ewv_A Twitching motility prot 97.8 2.4E-05 8.1E-10 66.4 5.4 97 41-141 133-238 (372)
146 3be4_A Adenylate kinase; malar 97.8 1.6E-05 5.6E-10 61.6 4.1 30 44-73 5-34 (217)
147 1ly1_A Polynucleotide kinase; 97.8 1.1E-05 3.8E-10 59.6 2.9 25 46-70 4-29 (181)
148 1zd8_A GTP:AMP phosphotransfer 97.8 1.7E-05 5.7E-10 61.8 3.9 29 44-72 7-35 (227)
149 1ak2_A Adenylate kinase isoenz 97.8 2E-05 7E-10 61.7 4.3 29 44-72 16-44 (233)
150 2jaq_A Deoxyguanosine kinase; 97.7 1.9E-05 6.6E-10 59.4 3.9 27 46-72 2-28 (205)
151 1cke_A CK, MSSA, protein (cyti 97.7 2E-05 6.8E-10 60.7 4.1 29 45-73 6-34 (227)
152 2ze6_A Isopentenyl transferase 97.7 2E-05 7E-10 63.1 4.1 27 46-72 3-29 (253)
153 2pez_A Bifunctional 3'-phospho 97.7 2.6E-05 8.9E-10 58.3 4.4 33 43-75 4-39 (179)
154 2z0h_A DTMP kinase, thymidylat 97.7 2.9E-05 9.8E-10 58.3 4.6 29 47-75 3-34 (197)
155 2v54_A DTMP kinase, thymidylat 97.7 2.2E-05 7.6E-10 59.4 3.9 32 44-75 4-36 (204)
156 1e4v_A Adenylate kinase; trans 97.7 2.3E-05 7.7E-10 60.5 3.9 27 46-72 2-28 (214)
157 3uie_A Adenylyl-sulfate kinase 97.7 5.8E-05 2E-09 57.6 6.1 27 42-68 23-49 (200)
158 1w36_D RECD, exodeoxyribonucle 97.7 5.6E-05 1.9E-09 67.9 6.8 32 110-141 262-294 (608)
159 1nks_A Adenylate kinase; therm 97.7 1.6E-05 5.4E-10 59.2 2.7 24 46-69 3-26 (194)
160 2pbr_A DTMP kinase, thymidylat 97.7 3.5E-05 1.2E-09 57.5 4.5 29 46-74 2-33 (195)
161 2r2a_A Uncharacterized protein 97.7 5.7E-05 2E-09 59.0 5.9 33 46-78 7-48 (199)
162 3sr0_A Adenylate kinase; phosp 97.7 2.7E-05 9.1E-10 61.1 3.9 27 46-72 2-28 (206)
163 2plr_A DTMP kinase, probable t 97.7 2.3E-05 7.9E-10 59.3 3.4 28 44-71 4-31 (213)
164 1ukz_A Uridylate kinase; trans 97.7 2.6E-05 9E-10 59.2 3.7 27 46-72 17-43 (203)
165 2xb4_A Adenylate kinase; ATP-b 97.6 3.5E-05 1.2E-09 60.2 4.1 27 46-72 2-28 (223)
166 2r8r_A Sensor protein; KDPD, P 97.6 0.00054 1.8E-08 55.0 11.1 91 46-137 8-117 (228)
167 2if2_A Dephospho-COA kinase; a 97.6 4E-05 1.4E-09 58.2 4.0 26 46-72 3-28 (204)
168 2bbw_A Adenylate kinase 4, AK4 97.6 4.7E-05 1.6E-09 60.0 4.5 29 44-72 27-55 (246)
169 1kgd_A CASK, peripheral plasma 97.6 3.9E-05 1.3E-09 57.9 3.9 27 43-69 4-30 (180)
170 3umf_A Adenylate kinase; rossm 97.6 3.8E-05 1.3E-09 60.9 3.9 28 45-72 30-57 (217)
171 2p5t_B PEZT; postsegregational 97.6 3.3E-05 1.1E-09 61.5 3.5 29 45-73 33-61 (253)
172 3ake_A Cytidylate kinase; CMP 97.6 5.2E-05 1.8E-09 57.3 4.4 28 46-73 4-31 (208)
173 1z6g_A Guanylate kinase; struc 97.6 4.2E-05 1.4E-09 59.8 3.8 37 32-68 11-47 (218)
174 2wwf_A Thymidilate kinase, put 97.6 2.6E-05 8.8E-10 59.3 2.5 29 43-71 9-37 (212)
175 1gvn_B Zeta; postsegregational 97.6 7.6E-05 2.6E-09 61.0 5.4 25 46-70 35-59 (287)
176 3vkw_A Replicase large subunit 97.6 3.8E-05 1.3E-09 67.3 3.7 94 46-142 163-266 (446)
177 1jjv_A Dephospho-COA kinase; P 97.6 4.2E-05 1.4E-09 58.3 3.4 26 46-72 4-29 (206)
178 4e22_A Cytidylate kinase; P-lo 97.6 5.3E-05 1.8E-09 60.4 4.0 31 43-73 26-56 (252)
179 1n0w_A DNA repair protein RAD5 97.5 9.5E-05 3.2E-09 57.1 5.3 36 32-67 11-47 (243)
180 4eaq_A DTMP kinase, thymidylat 97.5 5.8E-05 2E-09 59.7 4.1 27 43-69 25-51 (229)
181 2j9r_A Thymidine kinase; TK1, 97.5 0.0003 1E-08 56.0 8.1 95 44-138 28-129 (214)
182 1w4r_A Thymidine kinase; type 97.5 0.00027 9.2E-09 55.5 7.5 96 43-139 19-119 (195)
183 3tr0_A Guanylate kinase, GMP k 97.5 5.5E-05 1.9E-09 57.2 3.5 26 43-68 6-31 (205)
184 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 6.8E-05 2.3E-09 60.0 4.1 29 45-73 5-36 (260)
185 1nn5_A Similar to deoxythymidy 97.5 4.5E-05 1.5E-09 58.0 2.9 27 44-70 9-35 (215)
186 2j41_A Guanylate kinase; GMP, 97.5 5.3E-05 1.8E-09 57.3 3.2 26 43-68 5-30 (207)
187 2w0m_A SSO2452; RECA, SSPF, un 97.5 4.8E-05 1.6E-09 58.0 3.1 46 32-77 10-59 (235)
188 1svm_A Large T antigen; AAA+ f 97.5 0.00015 5.1E-09 61.9 6.3 40 32-71 157-196 (377)
189 2bdt_A BH3686; alpha-beta prot 97.5 4.5E-05 1.5E-09 57.4 2.7 26 44-69 2-27 (189)
190 1uf9_A TT1252 protein; P-loop, 97.5 7.4E-05 2.5E-09 56.3 3.7 27 46-73 10-36 (203)
191 3zvl_A Bifunctional polynucleo 97.5 0.00012 4E-09 62.8 5.3 27 45-71 259-285 (416)
192 3tau_A Guanylate kinase, GMP k 97.5 7E-05 2.4E-09 57.8 3.4 27 43-69 7-33 (208)
193 1q3t_A Cytidylate kinase; nucl 97.4 0.0001 3.4E-09 57.8 4.3 32 42-73 14-45 (236)
194 1znw_A Guanylate kinase, GMP k 97.4 7.9E-05 2.7E-09 57.3 3.6 30 40-69 16-45 (207)
195 3c8u_A Fructokinase; YP_612366 97.4 8.8E-05 3E-09 57.1 3.7 36 43-78 21-59 (208)
196 2yvu_A Probable adenylyl-sulfa 97.4 6.3E-05 2.1E-09 56.5 2.6 26 44-69 13-38 (186)
197 3a00_A Guanylate kinase, GMP k 97.4 9.2E-05 3.2E-09 56.0 3.6 26 44-69 1-26 (186)
198 3r20_A Cytidylate kinase; stru 97.4 0.0001 3.5E-09 59.1 3.9 28 45-72 10-37 (233)
199 2grj_A Dephospho-COA kinase; T 97.4 0.00011 3.6E-09 57.0 3.9 28 46-73 14-41 (192)
200 1cr0_A DNA primase/helicase; R 97.4 0.00012 4.1E-09 59.1 4.2 45 33-77 24-72 (296)
201 1vec_A ATP-dependent RNA helic 97.4 0.00055 1.9E-08 51.6 7.7 33 26-62 26-58 (206)
202 1lvg_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 56.6 3.6 27 43-69 3-29 (198)
203 3crm_A TRNA delta(2)-isopenten 97.4 9.7E-05 3.3E-09 62.1 3.6 31 45-77 6-36 (323)
204 2ga8_A Hypothetical 39.9 kDa p 97.4 0.00011 3.9E-09 62.6 4.1 27 46-72 26-52 (359)
205 2h92_A Cytidylate kinase; ross 97.4 0.00014 4.8E-09 55.8 4.3 29 45-73 4-32 (219)
206 1vht_A Dephospho-COA kinase; s 97.4 0.00012 4E-09 56.4 3.7 27 45-72 5-31 (218)
207 1m7g_A Adenylylsulfate kinase; 97.4 0.00013 4.6E-09 56.0 4.0 29 41-69 22-50 (211)
208 2zts_A Putative uncharacterize 97.4 0.00025 8.6E-09 54.7 5.5 46 40-87 26-75 (251)
209 2v9p_A Replication protein E1; 97.4 0.0002 6.9E-09 59.6 5.2 37 32-68 114-150 (305)
210 3bh0_A DNAB-like replicative h 97.4 0.00033 1.1E-08 57.7 6.5 57 29-87 53-112 (315)
211 4a74_A DNA repair and recombin 97.3 0.00012 4.2E-09 55.9 3.3 37 32-68 12-49 (231)
212 1ex7_A Guanylate kinase; subst 97.3 0.00019 6.6E-09 55.5 4.4 25 45-69 2-26 (186)
213 1uj2_A Uridine-cytidine kinase 97.3 0.00013 4.3E-09 57.9 3.3 26 46-71 24-49 (252)
214 2ehv_A Hypothetical protein PH 97.3 0.00019 6.5E-09 55.5 4.2 38 40-77 26-67 (251)
215 3cmu_A Protein RECA, recombina 97.3 0.00033 1.1E-08 70.7 6.9 49 31-79 1412-1465(2050)
216 1jr3_D DNA polymerase III, del 97.3 0.0015 5.2E-08 53.6 9.9 81 43-136 17-103 (343)
217 3asz_A Uridine kinase; cytidin 97.3 0.00011 3.9E-09 56.0 2.8 27 43-69 5-31 (211)
218 2dr3_A UPF0273 protein PH0284; 97.3 0.00026 9E-09 54.6 4.8 38 41-78 20-60 (247)
219 3ney_A 55 kDa erythrocyte memb 97.3 0.00017 5.7E-09 56.5 3.6 27 43-69 18-44 (197)
220 2oap_1 GSPE-2, type II secreti 97.3 0.00035 1.2E-08 61.8 6.0 49 26-77 245-293 (511)
221 1p9r_A General secretion pathw 97.3 0.00052 1.8E-08 59.3 6.9 44 26-71 151-194 (418)
222 1htw_A HI0065; nucleotide-bind 97.3 0.00026 9E-09 53.1 4.4 29 40-68 29-57 (158)
223 4a1f_A DNAB helicase, replicat 97.3 0.00046 1.6E-08 58.2 6.3 59 28-88 30-91 (338)
224 3a8t_A Adenylate isopentenyltr 97.2 0.0001 3.5E-09 62.4 2.3 28 44-71 40-67 (339)
225 2qt1_A Nicotinamide riboside k 97.2 0.00012 4.1E-09 55.9 2.4 26 43-68 20-45 (207)
226 1ltq_A Polynucleotide kinase; 97.2 0.00017 5.7E-09 58.1 3.3 25 46-70 4-29 (301)
227 1rz3_A Hypothetical protein rb 97.2 0.00087 3E-08 51.2 7.2 32 44-75 22-56 (201)
228 3fdi_A Uncharacterized protein 97.2 0.00025 8.6E-09 54.9 4.1 28 46-73 8-35 (201)
229 2jeo_A Uridine-cytidine kinase 97.2 0.00019 6.5E-09 56.6 3.4 38 34-71 15-52 (245)
230 2z43_A DNA repair and recombin 97.2 0.00041 1.4E-08 57.3 5.3 55 32-86 94-158 (324)
231 2r6a_A DNAB helicase, replicat 97.2 0.00063 2.2E-08 58.7 6.6 55 30-86 189-247 (454)
232 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00082 2.8E-08 53.7 6.5 100 42-141 26-132 (219)
233 3iuy_A Probable ATP-dependent 97.1 0.0022 7.6E-08 49.2 8.7 20 43-62 56-75 (228)
234 1gtv_A TMK, thymidylate kinase 97.1 0.00014 4.7E-09 55.3 1.7 24 46-69 2-25 (214)
235 2q6t_A DNAB replication FORK h 97.1 0.00075 2.5E-08 58.1 6.5 57 29-87 185-245 (444)
236 4gp7_A Metallophosphoesterase; 97.1 0.0002 6.8E-09 53.7 2.4 21 43-63 8-28 (171)
237 1g5t_A COB(I)alamin adenosyltr 97.1 0.0027 9.2E-08 49.8 9.0 37 44-80 28-67 (196)
238 2wsm_A Hydrogenase expression/ 97.1 0.001 3.5E-08 50.7 6.4 43 27-70 14-56 (221)
239 3cmw_A Protein RECA, recombina 97.1 0.00052 1.8E-08 68.4 5.9 37 43-79 1081-1120(1706)
240 1v5w_A DMC1, meiotic recombina 97.1 0.00066 2.3E-08 56.6 5.7 55 32-86 109-173 (343)
241 2fwr_A DNA repair protein RAD2 97.1 0.0026 9E-08 54.1 9.5 112 25-140 93-222 (472)
242 2f6r_A COA synthase, bifunctio 97.1 0.00032 1.1E-08 56.9 3.6 26 46-72 77-102 (281)
243 2gza_A Type IV secretion syste 97.1 0.0004 1.4E-08 58.5 4.3 44 35-78 166-209 (361)
244 3lnc_A Guanylate kinase, GMP k 97.1 0.00019 6.7E-09 55.8 2.2 26 43-68 26-52 (231)
245 3bgw_A DNAB-like replicative h 97.1 0.00067 2.3E-08 58.8 5.6 56 30-87 183-241 (444)
246 1s96_A Guanylate kinase, GMP k 97.1 0.00037 1.3E-08 54.9 3.6 27 43-69 15-41 (219)
247 3d3q_A TRNA delta(2)-isopenten 97.0 0.00052 1.8E-08 58.0 4.6 31 45-77 8-38 (340)
248 2hf9_A Probable hydrogenase ni 97.0 0.0012 4E-08 50.5 6.2 41 28-69 23-63 (226)
249 1nlf_A Regulatory protein REPA 97.0 0.00038 1.3E-08 55.8 3.5 29 40-68 26-54 (279)
250 1q57_A DNA primase/helicase; d 97.0 0.00087 3E-08 58.3 5.9 54 32-87 230-287 (503)
251 2orv_A Thymidine kinase; TP4A 97.0 0.0043 1.5E-07 49.9 9.4 94 43-137 18-116 (234)
252 3v9p_A DTMP kinase, thymidylat 97.0 0.00066 2.3E-08 54.0 4.6 33 43-75 24-63 (227)
253 3p32_A Probable GTPase RV1496/ 97.0 0.0012 4.2E-08 55.1 6.4 33 46-78 81-116 (355)
254 3foz_A TRNA delta(2)-isopenten 97.0 0.00042 1.4E-08 58.2 3.3 31 45-77 11-41 (316)
255 4f4c_A Multidrug resistance pr 97.0 0.0032 1.1E-07 61.3 9.8 31 40-70 440-470 (1321)
256 3b85_A Phosphate starvation-in 97.0 0.00031 1.1E-08 55.0 2.3 25 43-67 21-45 (208)
257 3tqc_A Pantothenate kinase; bi 96.9 0.00089 3E-08 56.0 5.1 24 46-69 94-117 (321)
258 1c9k_A COBU, adenosylcobinamid 96.9 0.0006 2E-08 52.7 3.7 31 47-78 2-32 (180)
259 3exa_A TRNA delta(2)-isopenten 96.9 0.00049 1.7E-08 57.9 3.0 26 45-70 4-29 (322)
260 3hdt_A Putative kinase; struct 96.9 0.00071 2.4E-08 53.6 3.8 28 46-73 16-43 (223)
261 2ged_A SR-beta, signal recogni 96.9 0.00089 3E-08 49.6 4.2 42 27-68 26-72 (193)
262 3hr8_A Protein RECA; alpha and 96.9 0.0011 3.7E-08 56.3 5.1 51 28-78 43-98 (356)
263 1g8f_A Sulfate adenylyltransfe 96.9 0.00066 2.3E-08 60.2 3.9 44 27-70 377-421 (511)
264 3cr8_A Sulfate adenylyltranfer 96.9 0.00062 2.1E-08 60.8 3.8 42 28-69 352-394 (552)
265 3gmt_A Adenylate kinase; ssgci 96.9 0.00082 2.8E-08 53.9 4.1 28 46-73 10-37 (230)
266 2qmh_A HPR kinase/phosphorylas 96.9 0.00043 1.5E-08 54.8 2.4 26 44-69 34-59 (205)
267 2dpy_A FLII, flagellum-specifi 96.9 0.0016 5.5E-08 56.5 6.2 47 31-78 145-191 (438)
268 1lw7_A Transcriptional regulat 96.8 0.00059 2E-08 57.0 3.3 28 44-71 170-197 (365)
269 2zr9_A Protein RECA, recombina 96.8 0.0014 4.7E-08 55.1 5.6 51 28-78 43-98 (349)
270 4b3f_X DNA-binding protein smu 96.8 0.0008 2.7E-08 60.5 4.4 43 26-71 190-233 (646)
271 2dyk_A GTP-binding protein; GT 96.8 0.00067 2.3E-08 48.4 3.1 22 46-67 3-24 (161)
272 1sq5_A Pantothenate kinase; P- 96.8 0.00094 3.2E-08 54.7 4.3 27 43-69 79-105 (308)
273 3kta_A Chromosome segregation 96.8 0.00078 2.7E-08 50.1 3.4 25 46-70 28-52 (182)
274 1rj9_A FTSY, signal recognitio 96.8 0.0007 2.4E-08 56.0 3.4 26 44-69 102-127 (304)
275 3tif_A Uncharacterized ABC tra 96.8 0.00087 3E-08 53.1 3.8 28 42-69 29-56 (235)
276 1x6v_B Bifunctional 3'-phospho 96.8 0.00093 3.2E-08 60.7 4.4 32 44-75 52-86 (630)
277 2qm8_A GTPase/ATPase; G protei 96.8 0.00099 3.4E-08 55.6 4.3 45 33-77 44-91 (337)
278 1oix_A RAS-related protein RAB 96.8 0.00072 2.5E-08 50.8 3.1 23 46-68 31-53 (191)
279 1odf_A YGR205W, hypothetical 3 96.8 0.0014 4.8E-08 53.7 5.1 24 46-69 33-56 (290)
280 3io5_A Recombination and repai 96.8 0.0032 1.1E-07 53.2 7.3 48 32-80 12-69 (333)
281 2ce2_X GTPase HRAS; signaling 96.8 0.00073 2.5E-08 48.0 3.0 22 46-67 5-26 (166)
282 1z2a_A RAS-related protein RAB 96.8 0.00074 2.5E-08 48.4 3.0 22 46-67 7-28 (168)
283 1kao_A RAP2A; GTP-binding prot 96.8 0.00077 2.6E-08 48.0 3.1 22 46-67 5-26 (167)
284 4f4c_A Multidrug resistance pr 96.8 0.0024 8.3E-08 62.1 7.4 30 40-69 1101-1130(1321)
285 2f9l_A RAB11B, member RAS onco 96.8 0.00075 2.6E-08 50.8 3.1 23 46-68 7-29 (199)
286 2pcj_A ABC transporter, lipopr 96.8 0.00098 3.3E-08 52.4 3.9 28 42-69 28-55 (224)
287 1u94_A RECA protein, recombina 96.8 0.0014 4.7E-08 55.4 4.9 51 28-78 45-100 (356)
288 2nzj_A GTP-binding protein REM 96.8 0.00077 2.6E-08 48.7 3.0 21 46-66 6-26 (175)
289 2i1q_A DNA repair and recombin 96.8 0.0012 4E-08 54.1 4.4 37 31-67 84-121 (322)
290 1pzn_A RAD51, DNA repair and r 96.7 0.0014 4.8E-08 54.9 4.9 37 32-68 118-155 (349)
291 1b0u_A Histidine permease; ABC 96.7 0.001 3.4E-08 53.7 3.8 29 41-69 29-57 (262)
292 2zej_A Dardarin, leucine-rich 96.7 0.00064 2.2E-08 50.5 2.5 21 46-66 4-24 (184)
293 3aez_A Pantothenate kinase; tr 96.7 0.00073 2.5E-08 56.0 3.0 27 43-69 89-115 (312)
294 2wji_A Ferrous iron transport 96.7 0.00083 2.8E-08 49.0 2.9 21 46-66 5-25 (165)
295 2eyq_A TRCF, transcription-rep 96.7 0.013 4.4E-07 56.4 11.9 41 25-65 603-645 (1151)
296 1u8z_A RAS-related protein RAL 96.7 0.00088 3E-08 47.7 3.0 22 46-67 6-27 (168)
297 1ek0_A Protein (GTP-binding pr 96.7 0.00088 3E-08 48.0 3.0 22 46-67 5-26 (170)
298 4edh_A DTMP kinase, thymidylat 96.7 0.0015 5.1E-08 51.2 4.6 30 44-73 6-38 (213)
299 3cmw_A Protein RECA, recombina 96.7 0.0031 1.1E-07 62.9 7.8 52 29-80 17-73 (1706)
300 3dm5_A SRP54, signal recogniti 96.7 0.026 8.9E-07 49.2 12.8 33 46-78 102-137 (443)
301 2cbz_A Multidrug resistance-as 96.7 0.0007 2.4E-08 53.8 2.6 28 41-68 28-55 (237)
302 1z0j_A RAB-22, RAS-related pro 96.7 0.00093 3.2E-08 47.9 3.1 23 46-68 8-30 (170)
303 2obl_A ESCN; ATPase, hydrolase 96.7 0.0022 7.4E-08 54.0 5.8 46 31-77 59-104 (347)
304 3b9q_A Chloroplast SRP recepto 96.7 0.0008 2.7E-08 55.5 3.0 25 44-68 100-124 (302)
305 1z08_A RAS-related protein RAB 96.7 0.00095 3.3E-08 48.0 3.1 22 46-67 8-29 (170)
306 1wms_A RAB-9, RAB9, RAS-relate 96.7 0.00096 3.3E-08 48.4 3.1 22 46-67 9-30 (177)
307 4hlc_A DTMP kinase, thymidylat 96.7 0.0015 5.2E-08 50.8 4.4 30 44-73 2-33 (205)
308 2axn_A 6-phosphofructo-2-kinas 96.7 0.0015 5.2E-08 57.7 4.8 26 46-71 37-62 (520)
309 1g16_A RAS-related protein SEC 96.7 0.00095 3.3E-08 47.9 3.0 22 46-67 5-26 (170)
310 2erx_A GTP-binding protein DI- 96.7 0.00095 3.2E-08 47.9 2.9 21 46-66 5-25 (172)
311 1ky3_A GTP-binding protein YPT 96.7 0.001 3.4E-08 48.3 3.1 22 46-67 10-31 (182)
312 1g6h_A High-affinity branched- 96.7 0.0013 4.3E-08 52.8 3.9 28 42-69 31-58 (257)
313 3tmk_A Thymidylate kinase; pho 96.7 0.002 6.8E-08 50.8 5.0 33 43-75 4-36 (216)
314 1sgw_A Putative ABC transporte 96.7 0.0014 4.9E-08 51.5 4.1 28 42-69 33-60 (214)
315 1moz_A ARL1, ADP-ribosylation 96.7 0.001 3.5E-08 48.6 3.1 32 34-65 5-39 (183)
316 2j0s_A ATP-dependent RNA helic 96.7 0.0095 3.2E-07 49.2 9.3 24 40-63 70-93 (410)
317 4gzl_A RAS-related C3 botulinu 96.7 0.00089 3E-08 50.7 2.8 38 28-66 15-52 (204)
318 1tf7_A KAIC; homohexamer, hexa 96.7 0.00096 3.3E-08 58.6 3.3 46 32-77 26-76 (525)
319 1ji0_A ABC transporter; ATP bi 96.6 0.0013 4.6E-08 52.1 3.9 28 42-69 30-57 (240)
320 2ocp_A DGK, deoxyguanosine kin 96.6 0.00097 3.3E-08 52.2 3.0 25 45-69 3-27 (241)
321 2p67_A LAO/AO transport system 96.6 0.0037 1.3E-07 52.0 6.7 38 42-79 54-94 (341)
322 1r2q_A RAS-related protein RAB 96.6 0.0011 3.7E-08 47.5 3.0 22 46-67 8-29 (170)
323 1nrj_B SR-beta, signal recogni 96.6 0.001 3.5E-08 50.4 3.0 24 45-68 13-36 (218)
324 2ixe_A Antigen peptide transpo 96.6 0.0013 4.4E-08 53.3 3.8 30 40-69 41-70 (271)
325 2ff7_A Alpha-hemolysin translo 96.6 0.0014 4.7E-08 52.4 3.9 28 42-69 33-60 (247)
326 3q85_A GTP-binding protein REM 96.6 0.001 3.6E-08 47.8 2.9 21 46-66 4-24 (169)
327 2zu0_C Probable ATP-dependent 96.6 0.001 3.6E-08 53.7 3.2 28 41-68 43-70 (267)
328 1c1y_A RAS-related protein RAP 96.6 0.0011 3.8E-08 47.4 3.0 21 46-66 5-25 (167)
329 2pze_A Cystic fibrosis transme 96.6 0.0015 5E-08 51.6 4.0 29 41-69 31-59 (229)
330 3lda_A DNA repair protein RAD5 96.6 0.0026 9E-08 54.6 5.9 35 33-67 166-201 (400)
331 3bc1_A RAS-related protein RAB 96.6 0.0011 3.7E-08 48.5 3.0 22 46-67 13-34 (195)
332 1xp8_A RECA protein, recombina 96.6 0.0025 8.4E-08 54.1 5.6 51 28-78 56-111 (366)
333 2wjg_A FEOB, ferrous iron tran 96.6 0.0011 3.6E-08 48.9 2.9 21 46-66 9-29 (188)
334 1r8s_A ADP-ribosylation factor 96.6 0.0011 3.9E-08 47.4 3.0 22 46-67 2-23 (164)
335 2px0_A Flagellar biosynthesis 96.6 0.0012 4E-08 54.3 3.4 36 43-78 104-143 (296)
336 2f1r_A Molybdopterin-guanine d 96.6 0.00091 3.1E-08 50.8 2.6 25 45-69 3-27 (171)
337 2olj_A Amino acid ABC transpor 96.6 0.0014 4.9E-08 53.0 3.8 29 41-69 47-75 (263)
338 3h1t_A Type I site-specific re 96.6 0.016 5.6E-07 50.8 10.9 44 25-68 178-222 (590)
339 2gj8_A MNME, tRNA modification 96.6 0.00097 3.3E-08 49.3 2.6 24 44-67 4-27 (172)
340 3q72_A GTP-binding protein RAD 96.6 0.0011 3.7E-08 47.6 2.7 20 46-65 4-23 (166)
341 3sop_A Neuronal-specific septi 96.6 0.0012 3.9E-08 53.6 3.2 24 46-69 4-27 (270)
342 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0012 4.1E-08 52.7 3.3 26 42-67 27-52 (250)
343 2qi9_C Vitamin B12 import ATP- 96.6 0.0014 4.7E-08 52.7 3.6 29 41-69 23-51 (249)
344 3gfo_A Cobalt import ATP-bindi 96.6 0.0016 5.3E-08 53.2 3.9 29 41-69 31-59 (275)
345 2y8e_A RAB-protein 6, GH09086P 96.6 0.0012 4.2E-08 47.7 3.0 21 46-66 16-36 (179)
346 2fn4_A P23, RAS-related protei 96.6 0.0013 4.3E-08 47.7 3.0 22 46-67 11-32 (181)
347 1z0f_A RAB14, member RAS oncog 96.6 0.0013 4.4E-08 47.6 3.0 22 46-67 17-38 (179)
348 2hxs_A RAB-26, RAS-related pro 96.6 0.0012 4.1E-08 47.9 2.9 21 46-66 8-28 (178)
349 3llm_A ATP-dependent RNA helic 96.6 0.0024 8.1E-08 49.8 4.8 23 43-65 75-97 (235)
350 1mv5_A LMRA, multidrug resista 96.6 0.00085 2.9E-08 53.3 2.2 29 41-69 25-53 (243)
351 2ghi_A Transport protein; mult 96.6 0.001 3.5E-08 53.6 2.6 30 40-69 42-71 (260)
352 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0018 6.1E-08 55.0 4.3 29 41-69 27-55 (359)
353 1vpl_A ABC transporter, ATP-bi 96.6 0.0016 5.6E-08 52.4 3.8 29 41-69 38-66 (256)
354 1upt_A ARL1, ADP-ribosylation 96.6 0.0013 4.6E-08 47.3 3.0 21 46-66 9-29 (171)
355 2yz2_A Putative ABC transporte 96.6 0.0016 5.5E-08 52.5 3.8 29 41-69 30-58 (266)
356 3eph_A TRNA isopentenyltransfe 96.5 0.0013 4.4E-08 57.0 3.3 30 46-77 4-33 (409)
357 3e70_C DPA, signal recognition 96.5 0.0012 4.1E-08 55.2 3.0 25 44-68 129-153 (328)
358 3con_A GTPase NRAS; structural 96.5 0.0014 4.7E-08 48.4 3.0 22 46-67 23-44 (190)
359 3d31_A Sulfate/molybdate ABC t 96.5 0.0019 6.4E-08 54.6 4.2 29 41-69 23-51 (348)
360 2cxx_A Probable GTP-binding pr 96.5 0.0012 4E-08 48.5 2.6 21 46-66 3-23 (190)
361 1vma_A Cell division protein F 96.5 0.0013 4.3E-08 54.5 3.1 33 45-77 105-140 (306)
362 2lkc_A Translation initiation 96.5 0.0014 5E-08 47.5 3.0 22 45-66 9-30 (178)
363 2iwr_A Centaurin gamma 1; ANK 96.5 0.0012 4.2E-08 48.1 2.7 22 46-67 9-30 (178)
364 2a9k_A RAS-related protein RAL 96.5 0.0014 4.9E-08 47.6 3.0 22 46-67 20-41 (187)
365 3clv_A RAB5 protein, putative; 96.5 0.0015 5.2E-08 47.9 3.2 22 46-67 9-30 (208)
366 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0015 5.1E-08 47.8 3.1 22 46-67 6-27 (189)
367 2bme_A RAB4A, RAS-related prot 96.5 0.0014 4.9E-08 48.0 3.0 22 46-67 12-33 (186)
368 2gk6_A Regulator of nonsense t 96.5 0.0029 9.9E-08 56.8 5.5 38 26-67 181-218 (624)
369 2ihy_A ABC transporter, ATP-bi 96.5 0.0019 6.5E-08 52.7 3.9 29 41-69 44-72 (279)
370 4g1u_C Hemin import ATP-bindin 96.5 0.0012 4.2E-08 53.4 2.8 28 41-68 34-61 (266)
371 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0032 1.1E-07 55.0 5.6 33 36-68 130-162 (460)
372 1pui_A ENGB, probable GTP-bind 96.5 0.00055 1.9E-08 51.6 0.6 24 43-66 25-48 (210)
373 2efe_B Small GTP-binding prote 96.5 0.0015 5.3E-08 47.5 3.1 22 46-67 14-35 (181)
374 2oil_A CATX-8, RAS-related pro 96.5 0.0015 5.1E-08 48.5 3.0 22 46-67 27-48 (193)
375 2g6b_A RAS-related protein RAB 96.5 0.0015 5.3E-08 47.4 3.0 22 46-67 12-33 (180)
376 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0015 5.3E-08 48.2 3.1 22 46-67 9-30 (184)
377 1xjc_A MOBB protein homolog; s 96.5 0.0033 1.1E-07 48.0 5.0 32 46-77 6-40 (169)
378 3tw8_B RAS-related protein RAB 96.5 0.0014 4.7E-08 47.5 2.7 20 46-65 11-30 (181)
379 3k53_A Ferrous iron transport 96.5 0.0032 1.1E-07 50.2 5.1 21 46-66 5-25 (271)
380 2it1_A 362AA long hypothetical 96.5 0.0022 7.7E-08 54.4 4.4 28 42-69 27-54 (362)
381 3l9o_A ATP-dependent RNA helic 96.5 0.015 5.1E-07 55.8 10.5 37 25-65 184-220 (1108)
382 2yyz_A Sugar ABC transporter, 96.5 0.0023 7.7E-08 54.3 4.3 28 42-69 27-54 (359)
383 3rlf_A Maltose/maltodextrin im 96.5 0.0023 7.9E-08 54.8 4.4 28 42-69 27-54 (381)
384 3kkq_A RAS-related protein M-R 96.5 0.0016 5.6E-08 47.6 3.0 22 46-67 20-41 (183)
385 1mh1_A RAC1; GTP-binding, GTPa 96.5 0.0017 5.7E-08 47.4 3.0 21 46-66 7-27 (186)
386 1bif_A 6-phosphofructo-2-kinas 96.4 0.0013 4.6E-08 56.9 2.8 26 46-71 41-66 (469)
387 3iby_A Ferrous iron transport 96.4 0.0028 9.7E-08 50.6 4.5 21 46-66 3-23 (256)
388 1svi_A GTP-binding protein YSX 96.4 0.0014 4.9E-08 48.4 2.6 22 45-66 24-45 (195)
389 3b6e_A Interferon-induced heli 96.4 0.009 3.1E-07 44.7 7.1 39 25-67 33-71 (216)
390 2og2_A Putative signal recogni 96.4 0.0015 5.1E-08 55.4 3.0 25 44-68 157-181 (359)
391 1z47_A CYSA, putative ABC-tran 96.4 0.0025 8.4E-08 54.0 4.3 29 41-69 38-66 (355)
392 1v43_A Sugar-binding transport 96.4 0.0025 8.7E-08 54.2 4.4 29 41-69 34-62 (372)
393 2onk_A Molybdate/tungstate ABC 96.4 0.0026 8.8E-08 50.7 4.2 25 45-69 25-49 (240)
394 2nq2_C Hypothetical ABC transp 96.4 0.0015 5.2E-08 52.4 2.8 29 41-69 28-56 (253)
395 2gf9_A RAS-related protein RAB 96.4 0.0018 6.2E-08 47.9 3.0 22 46-67 24-45 (189)
396 3nh6_A ATP-binding cassette SU 96.4 0.0021 7.3E-08 53.3 3.7 30 40-69 76-105 (306)
397 1p5z_B DCK, deoxycytidine kina 96.4 0.00071 2.4E-08 53.7 0.8 26 44-69 24-49 (263)
398 3bwd_D RAC-like GTP-binding pr 96.4 0.0019 6.7E-08 46.9 3.1 23 45-67 9-31 (182)
399 1oxx_K GLCV, glucose, ABC tran 96.4 0.002 6.8E-08 54.4 3.5 29 41-69 28-56 (353)
400 3c5c_A RAS-like protein 12; GD 96.4 0.002 6.7E-08 48.0 3.2 22 46-67 23-44 (187)
401 3pqc_A Probable GTP-binding pr 96.4 0.0016 5.6E-08 47.8 2.7 22 46-67 25-46 (195)
402 2atv_A RERG, RAS-like estrogen 96.4 0.0019 6.6E-08 48.2 3.1 23 45-67 29-51 (196)
403 1z06_A RAS-related protein RAB 96.4 0.0019 6.6E-08 47.8 3.1 22 46-67 22-43 (189)
404 1g29_1 MALK, maltose transport 96.4 0.0026 9.1E-08 54.0 4.3 28 42-69 27-54 (372)
405 1a7j_A Phosphoribulokinase; tr 96.4 0.00074 2.5E-08 55.2 0.8 24 46-69 7-30 (290)
406 3ihw_A Centg3; RAS, centaurin, 96.4 0.002 6.8E-08 48.1 3.1 22 46-67 22-43 (184)
407 2yhs_A FTSY, cell division pro 96.4 0.0035 1.2E-07 55.6 5.1 25 44-68 293-317 (503)
408 1m2o_B GTP-binding protein SAR 96.4 0.0019 6.6E-08 48.3 3.1 21 46-66 25-45 (190)
409 1m8p_A Sulfate adenylyltransfe 96.4 0.0021 7.2E-08 57.6 3.8 31 45-75 397-431 (573)
410 3t5g_A GTP-binding protein RHE 96.4 0.0018 6.2E-08 47.3 2.8 21 46-66 8-28 (181)
411 2fg5_A RAB-22B, RAS-related pr 96.4 0.002 6.7E-08 48.0 3.0 22 46-67 25-46 (192)
412 2bov_A RAla, RAS-related prote 96.4 0.002 6.7E-08 48.0 3.0 22 46-67 16-37 (206)
413 2cjw_A GTP-binding protein GEM 96.4 0.0019 6.5E-08 48.6 2.9 22 46-67 8-29 (192)
414 1x3s_A RAS-related protein RAB 96.4 0.002 6.9E-08 47.4 3.0 22 46-67 17-38 (195)
415 2rcn_A Probable GTPase ENGC; Y 96.4 0.0029 9.9E-08 53.7 4.3 27 43-69 214-240 (358)
416 3tkl_A RAS-related protein RAB 96.4 0.002 6.9E-08 47.5 3.0 22 46-67 18-39 (196)
417 2yv5_A YJEQ protein; hydrolase 96.4 0.0022 7.7E-08 52.5 3.6 26 43-69 164-189 (302)
418 2qag_B Septin-6, protein NEDD5 96.4 0.0024 8.1E-08 55.5 3.8 34 34-67 30-65 (427)
419 3t1o_A Gliding protein MGLA; G 96.3 0.0021 7.1E-08 47.2 3.0 23 46-68 16-38 (198)
420 1yrb_A ATP(GTP)binding protein 96.3 0.0048 1.6E-07 48.2 5.2 33 46-78 16-50 (262)
421 3gd7_A Fusion complex of cysti 96.3 0.0019 6.4E-08 55.4 3.1 29 40-68 43-71 (390)
422 3i8s_A Ferrous iron transport 96.3 0.0049 1.7E-07 49.5 5.5 21 46-66 5-25 (274)
423 1np6_A Molybdopterin-guanine d 96.3 0.0024 8.1E-08 48.7 3.3 33 45-77 7-42 (174)
424 1zd9_A ADP-ribosylation factor 96.3 0.0021 7.3E-08 47.7 3.0 22 46-67 24-45 (188)
425 3ice_A Transcription terminati 96.3 0.0031 1.1E-07 54.7 4.4 33 36-68 166-198 (422)
426 1vg8_A RAS-related protein RAB 96.3 0.0022 7.5E-08 47.9 3.1 22 46-67 10-31 (207)
427 1zbd_A Rabphilin-3A; G protein 96.3 0.002 6.8E-08 48.1 2.9 21 46-66 10-30 (203)
428 2a5j_A RAS-related protein RAB 96.3 0.0022 7.4E-08 47.7 3.0 22 46-67 23-44 (191)
429 2gf0_A GTP-binding protein DI- 96.3 0.0022 7.4E-08 47.5 3.0 21 46-66 10-30 (199)
430 3lv8_A DTMP kinase, thymidylat 96.3 0.0024 8.2E-08 51.0 3.5 25 44-68 27-51 (236)
431 3dz8_A RAS-related protein RAB 96.3 0.0022 7.5E-08 47.6 3.1 23 46-68 25-47 (191)
432 1h65_A Chloroplast outer envel 96.3 0.002 6.9E-08 51.3 3.0 41 26-66 17-61 (270)
433 2p5s_A RAS and EF-hand domain 96.3 0.0023 7.7E-08 48.0 3.0 22 46-67 30-51 (199)
434 2db3_A ATP-dependent RNA helic 96.3 0.0066 2.3E-07 51.6 6.3 36 26-61 63-110 (434)
435 3reg_A RHO-like small GTPase; 96.3 0.0023 7.9E-08 47.6 3.0 22 46-67 25-46 (194)
436 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0022 7.6E-08 48.1 3.0 22 46-67 10-31 (206)
437 2pjz_A Hypothetical protein ST 96.3 0.0019 6.3E-08 52.3 2.6 28 40-68 27-54 (263)
438 1fzq_A ADP-ribosylation factor 96.3 0.0022 7.4E-08 47.5 2.7 21 46-66 18-38 (181)
439 3oes_A GTPase rhebl1; small GT 96.3 0.0024 8.2E-08 47.9 3.0 22 46-67 26-47 (201)
440 1ksh_A ARF-like protein 2; sma 96.2 0.0022 7.4E-08 47.2 2.7 22 45-66 19-40 (186)
441 2bbs_A Cystic fibrosis transme 96.2 0.0019 6.6E-08 53.0 2.6 27 42-68 62-88 (290)
442 1tq4_A IIGP1, interferon-induc 96.2 0.0033 1.1E-07 54.2 4.2 22 46-67 71-92 (413)
443 2fh5_B SR-beta, signal recogni 96.2 0.0026 8.8E-08 48.0 3.1 24 45-68 8-31 (214)
444 1ega_A Protein (GTP-binding pr 96.2 0.0042 1.4E-07 50.7 4.6 21 46-66 10-30 (301)
445 3cph_A RAS-related protein SEC 96.2 0.0026 8.9E-08 47.6 3.1 21 46-66 22-42 (213)
446 1zj6_A ADP-ribosylation factor 96.2 0.0024 8.1E-08 47.2 2.8 22 45-66 17-38 (187)
447 4tmk_A Protein (thymidylate ki 96.2 0.0031 1.1E-07 49.5 3.5 25 44-68 3-27 (213)
448 1gwn_A RHO-related GTP-binding 96.2 0.0027 9.1E-08 48.4 3.1 23 45-67 29-51 (205)
449 1u0l_A Probable GTPase ENGC; p 96.2 0.0029 9.8E-08 51.7 3.4 27 44-70 169-195 (301)
450 2atx_A Small GTP binding prote 96.2 0.0028 9.5E-08 47.0 3.0 22 46-67 20-41 (194)
451 3hjn_A DTMP kinase, thymidylat 96.2 0.0054 1.8E-07 47.2 4.7 39 47-85 3-44 (197)
452 2ew1_A RAS-related protein RAB 96.2 0.0028 9.6E-08 48.2 3.1 22 46-67 28-49 (201)
453 3cbq_A GTP-binding protein REM 96.2 0.002 6.9E-08 48.5 2.2 20 46-65 25-44 (195)
454 1z6t_A APAF-1, apoptotic prote 96.2 0.0036 1.2E-07 54.7 4.1 39 28-66 130-169 (591)
455 3ld9_A DTMP kinase, thymidylat 96.2 0.0025 8.6E-08 50.6 2.8 31 44-74 21-55 (223)
456 2fu5_C RAS-related protein RAB 96.2 0.0015 5.1E-08 47.8 1.4 21 46-66 10-30 (183)
457 2h17_A ADP-ribosylation factor 96.2 0.0022 7.7E-08 47.2 2.3 21 46-66 23-43 (181)
458 2o52_A RAS-related protein RAB 96.2 0.0027 9.2E-08 47.8 2.8 21 46-66 27-47 (200)
459 2q3h_A RAS homolog gene family 96.2 0.0028 9.5E-08 47.3 2.9 22 45-66 21-42 (201)
460 2v6i_A RNA helicase; membrane, 96.1 0.0083 2.8E-07 51.2 6.2 18 44-61 2-19 (431)
461 2fv8_A H6, RHO-related GTP-bin 96.1 0.003 1E-07 47.7 3.0 22 46-67 27-48 (207)
462 3lxx_A GTPase IMAP family memb 96.1 0.0028 9.7E-08 49.3 2.9 22 46-67 31-52 (239)
463 1tf7_A KAIC; homohexamer, hexa 96.1 0.0031 1.1E-07 55.3 3.5 45 33-77 269-317 (525)
464 3kl4_A SRP54, signal recogniti 96.1 0.0043 1.5E-07 53.9 4.3 34 45-78 98-134 (433)
465 4bas_A ADP-ribosylation factor 96.1 0.0029 9.9E-08 46.8 2.8 21 45-65 18-38 (199)
466 2f7s_A C25KG, RAS-related prot 96.1 0.003 1E-07 47.8 2.9 21 46-66 27-47 (217)
467 2gco_A H9, RHO-related GTP-bin 96.1 0.0031 1.1E-07 47.4 3.0 22 46-67 27-48 (201)
468 1f6b_A SAR1; gtpases, N-termin 96.1 0.0024 8.1E-08 48.2 2.3 20 46-65 27-46 (198)
469 2wjy_A Regulator of nonsense t 96.1 0.0062 2.1E-07 56.5 5.4 38 26-67 357-394 (800)
470 2il1_A RAB12; G-protein, GDP, 96.1 0.0029 9.9E-08 47.2 2.7 21 46-66 28-48 (192)
471 2hup_A RAS-related protein RAB 96.1 0.0035 1.2E-07 47.3 3.1 21 46-66 31-51 (201)
472 3iev_A GTP-binding protein ERA 96.1 0.0032 1.1E-07 51.5 3.1 20 46-65 12-31 (308)
473 2vp4_A Deoxynucleoside kinase; 96.1 0.0025 8.4E-08 49.7 2.3 29 43-72 19-47 (230)
474 2j1l_A RHO-related GTP-binding 96.1 0.0032 1.1E-07 48.0 2.8 21 46-66 36-56 (214)
475 4i1u_A Dephospho-COA kinase; s 96.1 0.0044 1.5E-07 48.9 3.7 27 46-73 11-37 (210)
476 2b6h_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 47.2 2.7 20 46-65 31-50 (192)
477 2j0v_A RAC-like GTP-binding pr 96.0 0.0036 1.2E-07 47.1 3.1 22 46-67 11-32 (212)
478 2h57_A ADP-ribosylation factor 96.0 0.0026 9E-08 47.1 2.2 23 46-68 23-45 (190)
479 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0038 1.3E-07 55.0 3.5 33 36-68 143-175 (473)
480 1t9h_A YLOQ, probable GTPase E 96.0 0.0014 4.8E-08 54.4 0.7 26 43-68 172-197 (307)
481 2g3y_A GTP-binding protein GEM 96.0 0.0038 1.3E-07 48.4 3.0 21 46-66 39-59 (211)
482 2www_A Methylmalonic aciduria 96.0 0.0041 1.4E-07 52.0 3.4 24 45-68 75-98 (349)
483 2gks_A Bifunctional SAT/APS ki 96.0 0.0037 1.3E-07 55.6 3.3 42 28-69 355-397 (546)
484 3tui_C Methionine import ATP-b 96.0 0.0038 1.3E-07 53.2 3.2 29 41-69 51-79 (366)
485 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0045 1.5E-07 45.6 3.1 23 46-68 25-47 (149)
486 4a4z_A Antiviral helicase SKI2 96.0 0.03 1E-06 53.1 9.5 35 25-63 39-73 (997)
487 2qu8_A Putative nucleolar GTP- 95.9 0.0032 1.1E-07 48.4 2.4 21 46-66 31-51 (228)
488 2j37_W Signal recognition part 95.9 0.0075 2.6E-07 53.3 5.0 33 46-78 103-138 (504)
489 2xtp_A GTPase IMAP family memb 95.9 0.0038 1.3E-07 49.0 2.8 22 45-66 23-44 (260)
490 3cpj_B GTP-binding protein YPT 95.9 0.0044 1.5E-07 47.4 3.1 22 46-67 15-36 (223)
491 2v3c_C SRP54, signal recogniti 95.9 0.0039 1.3E-07 54.0 2.9 34 45-78 100-136 (432)
492 1zu4_A FTSY; GTPase, signal re 95.9 0.0042 1.4E-07 51.6 3.0 31 46-76 107-140 (320)
493 3q3j_B RHO-related GTP-binding 95.9 0.0048 1.6E-07 47.1 3.1 23 45-67 28-50 (214)
494 2x77_A ADP-ribosylation factor 95.9 0.0027 9.2E-08 46.9 1.6 21 45-65 23-43 (189)
495 2whx_A Serine protease/ntpase/ 95.9 0.018 6.1E-07 51.8 7.2 23 38-60 180-202 (618)
496 4a2q_A RIG-I, retinoic acid in 95.9 0.033 1.1E-06 51.0 9.1 36 26-65 249-284 (797)
497 3a1s_A Iron(II) transport prot 95.9 0.0045 1.5E-07 49.5 3.0 21 46-66 7-27 (258)
498 2aka_B Dynamin-1; fusion prote 95.9 0.0089 3E-07 47.5 4.8 22 46-67 28-49 (299)
499 3llu_A RAS-related GTP-binding 95.9 0.0046 1.6E-07 46.2 2.9 22 45-66 21-42 (196)
500 4dkx_A RAS-related protein RAB 95.8 0.0049 1.7E-07 48.1 3.1 21 46-66 15-35 (216)
No 1
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.74 E-value=8.2e-18 Score=139.14 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=83.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEee--cCeEEEeccHHHHHhhcCcEEEEeCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIV--NGTAIYYDQSAVRAAIEGRVLILEGIEK 121 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~--~G~~~~~~gpl~~A~~~G~vlllDEId~ 121 (162)
+.+++|+||||||||++|+.+|+.++.++..++++.+++.+++.|..... .|.+.|.+|++ .+++++|||||+
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l-----~~~vl~iDEi~~ 120 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV-----FSNFILADEVNR 120 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT-----CSSEEEEETGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc-----cccEEEEEcccc
Confidence 67999999999999999999999999999999999999999999865543 46777888775 468999999999
Q ss_pred CCccHHHHHHHhhcCCeEEEc
Q psy4122 122 AERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 122 a~~~v~~~L~~lle~r~l~l~ 142 (162)
+++++++.|+++++++.+.+.
T Consensus 121 ~~~~~~~~Ll~~l~~~~~~~~ 141 (331)
T 2r44_A 121 SPAKVQSALLECMQEKQVTIG 141 (331)
T ss_dssp SCHHHHHHHHHHHHHSEEEET
T ss_pred CCHHHHHHHHHHHhcCceeeC
Confidence 999999999999999987763
No 2
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.56 E-value=8.3e-15 Score=148.99 Aligned_cols=123 Identities=9% Similarity=-0.005 Sum_probs=102.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEE
Q psy4122 20 SVNTDALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIY 99 (162)
Q Consensus 20 ~~~~~~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~ 99 (162)
+.+...+||.+.+....+..+...+.++++.||+|||||++++.+|+.+|+++.+++|+++++.+++-
T Consensus 621 ~~~rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg------------ 688 (2695)
T 4akg_A 621 IPERLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLS------------ 688 (2695)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHH------------
T ss_pred CCCcceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhh------------
Confidence 34455679999999999999999999999999999999999999999999999999999999999883
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhh-------cCCeEEEc-CCcEEecCcchHhh
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLL-------ENREMHLE-DGRFLVSASTYDKL 156 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~ll-------e~r~l~l~-~g~~i~~~~~f~~~ 156 (162)
..+..++..|.|+++||||+++++++++|.+.+ .++...++ +|+.+..+++|..+
T Consensus 689 --~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vf 751 (2695)
T 4akg_A 689 --RLLVGITQIGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVF 751 (2695)
T ss_dssp --HHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEE
T ss_pred --HHHHHHHhcCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEE
Confidence 145667788999999999999999999994433 34443333 57777777777544
No 3
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.54 E-value=2.7e-14 Score=105.82 Aligned_cols=94 Identities=19% Similarity=0.135 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
++.+.+..+.+......+.|++|+||||||||++|+.+++.. +.|+. ++|....+..++ .+.
T Consensus 7 s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~--------------~~~ 71 (145)
T 3n70_A 7 SEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQL--------------NDF 71 (145)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCH--------------HHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhh--------------hcH
Confidence 344444444444444567799999999999999999999876 77888 888643322111 122
Q ss_pred HHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
+.. .++++|+||||++++++++..|..+++.+
T Consensus 72 ~~~--a~~g~l~ldei~~l~~~~q~~Ll~~l~~~ 103 (145)
T 3n70_A 72 IAL--AQGGTLVLSHPEHLTREQQYHLVQLQSQE 103 (145)
T ss_dssp HHH--HTTSCEEEECGGGSCHHHHHHHHHHHHSS
T ss_pred HHH--cCCcEEEEcChHHCCHHHHHHHHHHHhhc
Confidence 322 37789999999999999999999999653
No 4
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=3.5e-14 Score=113.86 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC---CceEEEEeccCCC---hhhhccee-EeecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLSRDTT---EADIKQRR-EIVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~~~~~---~~dL~g~~-~~~~G~~~~ 99 (162)
++.+.+.++.+......+.+++|+||||||||++|+.++...+ .|+..++|+.... .+++.|.. ..-.|....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~ 91 (265)
T 2bjv_A 12 ANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91 (265)
T ss_dssp CHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------C
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCccccccccccc
Confidence 4444444444444444567999999999999999999998875 6788888874321 23344421 111233333
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREM 139 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l 139 (162)
..|.+..| ++++|+||||++++++++..|..+++++.+
T Consensus 92 ~~~~l~~a--~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~ 129 (265)
T 2bjv_A 92 HPGRFERA--DGGTLFLDELATAPMMVQEKLLRVIEYGEL 129 (265)
T ss_dssp CCCHHHHT--TTSEEEEESGGGSCHHHHHHHHHHHHHCEE
T ss_pred ccchhhhc--CCcEEEEechHhcCHHHHHHHHHHHHhCCe
Confidence 44555443 578999999999999999999999998764
No 5
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.51 E-value=7.3e-14 Score=115.32 Aligned_cols=100 Identities=13% Similarity=0.202 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhc----CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 27 TQDWLSHLRWILQKD----NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~----~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
.....+.++.++... ....+++|+||||||||++|+++|+.++.++..+++.......++.
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~--------------- 98 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLA--------------- 98 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHH---------------
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHH---------------
Confidence 356666666666543 2335899999999999999999999999998888876443333332
Q ss_pred HHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 103 SAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.......++++|+||||+.+++++++.|+.+++++.+.+
T Consensus 99 ~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~ 137 (338)
T 3pfi_A 99 AILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDI 137 (338)
T ss_dssp HHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC--
T ss_pred HHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchh
Confidence 223334578999999999999999999999999887544
No 6
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=6.5e-15 Score=132.66 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=74.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEe--ecCeEEEeccHHHHHhhcCcEEEEeCCCCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREI--VNGTAIYYDQSAVRAAIEGRVLILEGIEKAE 123 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~--~~G~~~~~~gpl~~A~~~G~vlllDEId~a~ 123 (162)
|+||+||||||||++|+++|+.++++... .....+..++.+.... ..|...+..|++..| +|++++|||||+++
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~--~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A--~~gil~IDEid~l~ 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT--TGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA--DGGIAVIDEIDKMR 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC--CTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH--SSSEECCTTTTCCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec--CCCccccccccceeeeccccccccccCCeeEec--CCCcEEeehhhhCC
Confidence 89999999999999999999999876432 3233455666653211 246677788888776 88999999999999
Q ss_pred ccHHHHHHHhhcCCeEEEc
Q psy4122 124 RNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 124 ~~v~~~L~~lle~r~l~l~ 142 (162)
+++++.|+++||++.+.+.
T Consensus 405 ~~~q~~Ll~~le~~~i~i~ 423 (595)
T 3f9v_A 405 DEDRVAIHEAMEQQTVSIA 423 (595)
T ss_dssp SHHHHHHHHHHHSSSEEEE
T ss_pred HhHhhhhHHHHhCCEEEEe
Confidence 9999999999999998875
No 7
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.51 E-value=2.3e-14 Score=127.09 Aligned_cols=101 Identities=22% Similarity=0.237 Sum_probs=72.9
Q ss_pred HHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC--ceEEEEeccCCChhhhcceeEe----ecCeE-EEeccHHHHHhh
Q psy4122 37 ILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR--EVEYICLSRDTTEADIKQRREI----VNGTA-IYYDQSAVRAAI 109 (162)
Q Consensus 37 i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~--p~~~v~~~~~~~~~dL~g~~~~----~~G~~-~~~~gpl~~A~~ 109 (162)
+..+...+.|+||+||||||||++|+.+|..++. ++..+.+. -+++++|+|.... ..|.+ .+..|++ .
T Consensus 34 l~~al~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~-~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l----~ 108 (500)
T 3nbx_X 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTR-FSTPEEVFGPLSIQALKDEGRYERLTSGYL----P 108 (500)
T ss_dssp HHHHHHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCT-TCCHHHHHCCBC----------CBCCTTSG----G
T ss_pred HHHHHhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHh-cCCHHHhcCcccHHHHhhchhHHhhhccCC----C
Confidence 3334445789999999999999999999998854 44444443 3478899884332 12333 2444442 2
Q ss_pred cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 110 EGRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 110 ~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
.+++|+||||+++++++++.|+.+++++.+.+.
T Consensus 109 ~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~ 141 (500)
T 3nbx_X 109 EAEIVFLDEIWKAGPAILNTLLTAINERQFRNG 141 (500)
T ss_dssp GCSEEEEESGGGCCHHHHHHHHHHHHSSEEECS
T ss_pred cceeeeHHhHhhhcHHHHHHHHHHHHHHhccCC
Confidence 467999999999999999999999999988763
No 8
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.50 E-value=2e-14 Score=116.86 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHhcCC--------CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeEee
Q psy4122 28 QDWLSHLRWILQKDNM--------SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRREIV 93 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~--------g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~~~ 93 (162)
...++.+...+..... ..+++|+||||||||++|+.+|+.+ +.++..+.|..... .++++|..
T Consensus 23 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--- 99 (311)
T 4fcw_A 23 DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAP--- 99 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCC---
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCC---
Confidence 3455555555544321 2479999999999999999999987 55678888864332 44555521
Q ss_pred cCeEEEec-cHHHHHhh--cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 94 NGTAIYYD-QSAVRAAI--EGRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 94 ~G~~~~~~-gpl~~A~~--~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
.+...+.. +.+..++. .+++++|||++++++++++.|+.+++++.+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~ 151 (311)
T 4fcw_A 100 PGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS 151 (311)
T ss_dssp TTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT
T ss_pred CccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC
Confidence 22222222 46666665 457999999999999999999999999887643
No 9
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.47 E-value=5.5e-14 Score=115.83 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC-------ce------------------------EEEEeccCCChhhhcceeEe
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR-------EV------------------------EYICLSRDTTEADIKQRREI 92 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~-------p~------------------------~~v~~~~~~~~~dL~g~~~~ 92 (162)
..++||+||||||||++|+.+|+.++. ++ ..+......+.+++.|...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 124 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDI 124 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECH
T ss_pred CceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechh
Confidence 458999999999999999999998874 21 12222333445566653211
Q ss_pred ----ecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 93 ----VNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 93 ----~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
.++...+.+|.+..| ++++|+||||+++++++++.|+.+++++...+.
T Consensus 125 ~~~~~~~~~~~~~g~~~~a--~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~ 176 (350)
T 1g8p_A 125 ERAISKGEKAFEPGLLARA--NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVE 176 (350)
T ss_dssp HHHHHHCGGGEECCHHHHH--TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEEC
T ss_pred hhhhcCCceeecCceeeec--CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEE
Confidence 234455667776555 688999999999999999999999998875553
No 10
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=7.6e-14 Score=127.49 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=75.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCC---hhhhcceeEeecCeEEEec-cHHHHHhhc--CcEEEEeCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTT---EADIKQRREIVNGTAIYYD-QSAVRAAIE--GRVLILEGI 119 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~---~~dL~g~~~~~~G~~~~~~-gpl~~A~~~--G~vlllDEI 119 (162)
++||+||||||||++|+.+|+.++.++.+++|+..++ .++++|.+ .|.+.+.. +.+..+++. +++|+||||
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~---~g~~g~~~~~~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP---PGYVGFDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC---SCSHHHHHTTHHHHHHHHCSSEEEEEETG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC---CCCcCccccchHHHHHHhCCCcEEEEeCc
Confidence 6999999999999999999999999999999985543 46666642 23222222 234555543 579999999
Q ss_pred CCCCccHHHHHHHhhcCCeEEEcCCc
Q psy4122 120 EKAERNVLPVLNNLLENREMHLEDGR 145 (162)
Q Consensus 120 d~a~~~v~~~L~~lle~r~l~l~~g~ 145 (162)
+++++++++.|+++||++.++...|+
T Consensus 567 ~~~~~~~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 567 EKAHPDVFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp GGSCHHHHHHHHHHHHHSEEEETTTE
T ss_pred cccCHHHHHHHHHHhcCcEEEcCCCC
Confidence 99999999999999999988765553
No 11
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.46 E-value=2.2e-13 Score=111.33 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHhc----CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 27 TQDWLSHLRWILQKD----NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~----~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
.....+.++..+... ....+++|+||||||||++|+++|+.++.++..+++.......++.+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~-------------- 82 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAA-------------- 82 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHH--------------
Confidence 345556666555432 24468999999999999999999999999988887765545555543
Q ss_pred HHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 103 SAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.+..++.++++|+||||+.++++.++.|..+++++.+.+
T Consensus 83 ~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~ 121 (324)
T 1hqc_A 83 ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121 (324)
T ss_dssp HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEE
T ss_pred HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHH
Confidence 122235678899999999999999999999999887654
No 12
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.45 E-value=4e-14 Score=104.83 Aligned_cols=88 Identities=17% Similarity=0.159 Sum_probs=62.8
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhc
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE 110 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~ 110 (162)
+.++..+. ....+.|++|+||||||||++|+.++...+ |+..++|... .+++ ..+.+. ..+
T Consensus 14 ~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~--~~~~-------------~~~~~~--~a~ 75 (143)
T 3co5_A 14 QEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY--LIDM-------------PMELLQ--KAE 75 (143)
T ss_dssp HHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH--HHHC-------------HHHHHH--HTT
T ss_pred HHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC--ChHh-------------hhhHHH--hCC
Confidence 33444433 234567999999999999999999998877 6665555311 1121 122222 235
Q ss_pred CcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 111 GRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 111 G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
+++++||||+.++++++..|..+++++
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~ 102 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKA 102 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhC
Confidence 789999999999999999999999865
No 13
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.43 E-value=5.5e-13 Score=107.69 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeE--eecCeEEEeccHHHHHhhcCcEEEEeCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRRE--IVNGTAIYYDQSAVRAAIEGRVLILEGIE 120 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~--~~~G~~~~~~gpl~~A~~~G~vlllDEId 120 (162)
...+++|+||||||||++|+.+|+.++.++..+++....+. .+.+... ....-+....|.+ .....+++|+|||++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vl~iDEi~ 126 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEV-GYVGKEVDSIIRDLTDSAGGAI-DAVEQNGIVFIDEID 126 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSC-CSGGGSTTHHHHHHHHTTTTCH-HHHHHHCEEEEECGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccC-CccCccHHHHHHHHHHHhhHHH-hhccCCCEEEEEChh
Confidence 35689999999999999999999999999888888643221 1111000 0000000000111 112346899999999
Q ss_pred CCCccH------------HHHHHHhhcCCeEEE
Q psy4122 121 KAERNV------------LPVLNNLLENREMHL 141 (162)
Q Consensus 121 ~a~~~v------------~~~L~~lle~r~l~l 141 (162)
+++++. ++.|++++|++.+..
T Consensus 127 ~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 159 (310)
T 1ofh_A 127 KICKKGEYSGADVSREGVQRDLLPLVEGSTVST 159 (310)
T ss_dssp GGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred hcCccccccccchhHHHHHHHHHHHhcCCeEec
Confidence 999886 899999999876544
No 14
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.43 E-value=4.6e-13 Score=110.94 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+........+++|+||||||||++|+.++... +.|+..++|....+ .++|.|... .-.|...-
T Consensus 8 s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~ 87 (304)
T 1ojl_A 8 SPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKR 87 (304)
T ss_dssp SHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CC
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhh
Confidence 444444444444444456799999999999999999999865 67888898874322 234444210 00121112
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREM 139 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l 139 (162)
..|.+..| ++++|+||||+.++++++..|+.+++++.+
T Consensus 88 ~~g~~~~a--~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~ 125 (304)
T 1ojl_A 88 REGRFVEA--DGGTLFLDEIGDISPLMQVRLLRAIQEREV 125 (304)
T ss_dssp CCCHHHHH--TTSEEEEESCTTCCHHHHHHHHHHHHSSBC
T ss_pred hcCHHHhc--CCCEEEEeccccCCHHHHHHHHHHHhcCEe
Confidence 33444433 678999999999999999999999998875
No 15
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.42 E-value=3.1e-13 Score=113.82 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=60.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH---------hhcCcEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA---------AIEGRVL 114 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A---------~~~G~vl 114 (162)
..+++|+||||||||++|+.+|+.++.|+..+++... +.+.+.|. . ..+.+..+ ...++++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~-~~~~~~g~------~---~~~~~~~~~~~~~~~~~~~~~~vl 141 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSL-TEAGYVGE------D---VENILTRLLQASDWNVQKAQKGIV 141 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGC-C-----------------CTHHHHHHHHHTTTCHHHHTTSEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhh-hhcCcCCc------c---HHHHHHHHHhhccchhhhcCCeEE
Confidence 4589999999999999999999999999988877632 22223221 0 01112111 1257899
Q ss_pred EEeCCCCCCcc--------------HHHHHHHhhcCCeEEEc
Q psy4122 115 ILEGIEKAERN--------------VLPVLNNLLENREMHLE 142 (162)
Q Consensus 115 llDEId~a~~~--------------v~~~L~~lle~r~l~l~ 142 (162)
+||||++++++ +++.|+.+||++.+.++
T Consensus 142 ~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 183 (376)
T 1um8_A 142 FIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIP 183 (376)
T ss_dssp EEETGGGC--------------CHHHHHHHHHHHHCCEEC--
T ss_pred EEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecc
Confidence 99999999998 99999999998876554
No 16
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.41 E-value=1.5e-14 Score=121.49 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=63.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH---------hhcCcE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA---------AIEGRV 113 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A---------~~~G~v 113 (162)
.+.+++|+||||||||++|+++|+.++.|+..+++..- ..+++.|.. . .+.+..+ ...+++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l-~~~~~~g~~---~------~~~~~~~~~~~~~~~~~~~~~v 119 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTL-TEAGYVGED---V------ENIIQKLLQKCDYDVQKAQRGI 119 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHH-TTCHHHHHH---H------THHHHHHHHHTTTCHHHHHHCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHh-ccccccccc---H------HHHHHHHHHHhhhhHHhcCCcE
Confidence 45689999999999999999999999999988888632 222333310 0 0111111 135689
Q ss_pred EEEeCCCCCCcc--------------HHHHHHHhhcCCeEEEc
Q psy4122 114 LILEGIEKAERN--------------VLPVLNNLLENREMHLE 142 (162)
Q Consensus 114 lllDEId~a~~~--------------v~~~L~~lle~r~l~l~ 142 (162)
|+||||++++++ +++.|+++||++...++
T Consensus 120 l~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~ 162 (363)
T 3hws_A 120 VYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVP 162 (363)
T ss_dssp EEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----
T ss_pred EEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeecc
Confidence 999999999988 99999999995555443
No 17
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.41 E-value=6.3e-13 Score=117.64 Aligned_cols=93 Identities=22% Similarity=0.228 Sum_probs=73.8
Q ss_pred cEEEEcCCCchHHHHHHHH-HHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeCCCCCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSY-LELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAER 124 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~l-A~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~ 124 (162)
|+||+|+||| ||.+++.+ +....+- .+. .....+..+|.+...-.+| +.++.|++..| +||++++||||++++
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft-~g~~ss~~gLt~s~r~~tG-~~~~~G~l~LA--dgGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRG-VYV-DLRRTELTDLTAVLKEDRG-WALRAGAAVLA--DGGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSE-EEE-EGGGCCHHHHSEEEEESSS-EEEEECHHHHT--TTSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCe-EEe-cCCCCCccCceEEEEcCCC-cccCCCeeEEc--CCCeeehHhhhhCCH
Confidence 8999999999 99999999 7776543 222 2223345667765111257 88999998776 899999999999999
Q ss_pred cHHHHHHHhhcCCeEEEcCCc
Q psy4122 125 NVLPVLNNLLENREMHLEDGR 145 (162)
Q Consensus 125 ~v~~~L~~lle~r~l~l~~g~ 145 (162)
++++.|++.||++++++. |.
T Consensus 315 ~~qsaLlEaMEe~~VtI~-G~ 334 (506)
T 3f8t_A 315 PHRWALMEAMDKGTVTVD-GI 334 (506)
T ss_dssp HHHHHHHHHHHHSEEEET-TE
T ss_pred HHHHHHHHHHhCCcEEEC-CE
Confidence 999999999999999887 54
No 18
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.40 E-value=3.1e-13 Score=125.54 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=67.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC---hhhhcceeEeecCeEEEec-cHHHHHhhc--CcEEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT---EADIKQRREIVNGTAIYYD-QSAVRAAIE--GRVLIL 116 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~---~~dL~g~~~~~~G~~~~~~-gpl~~A~~~--G~vlll 116 (162)
+++|+||||||||++|+.+|..+ +.++.+++|+.-++ .+.++|.+ .|.+.+.. |.+..+++. +++|+|
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~---~~~~G~~~~g~l~~~~~~~~~~vl~l 666 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAP---PGYVGYEEGGQLTEAVRRRPYSVILF 666 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHHHHHHHCSSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCC---CCCcCccccchHHHHHHhCCCeEEEE
Confidence 79999999999999999999988 77888888864332 34555532 34444444 567777643 679999
Q ss_pred eCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 117 EGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 117 DEId~a~~~v~~~L~~lle~r~l~l 141 (162)
|||+++++++++.|+++||++.+.-
T Consensus 667 DEi~~l~~~~~~~Ll~~l~~~~~~~ 691 (854)
T 1qvr_A 667 DEIEKAHPDVFNILLQILDDGRLTD 691 (854)
T ss_dssp SSGGGSCHHHHHHHHHHHTTTEECC
T ss_pred ecccccCHHHHHHHHHHhccCceEC
Confidence 9999999999999999999998763
No 19
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.39 E-value=5.3e-13 Score=122.28 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=63.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh--cCcEEEEeCCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI--EGRVLILEGIE 120 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~--~G~vlllDEId 120 (162)
++||+||||||||++|+++|+.+ +.++.+++|+.-++.... . .|.+..+++ .+++|+||||+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~------~-------~~~l~~~~~~~~~~vl~lDEi~ 589 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST------S-------GGQLTEKVRRKPYSVVLLDAIE 589 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC------C----------CHHHHHHCSSSEEEEECGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc------c-------cchhhHHHHhCCCeEEEEeCcc
Confidence 59999999999999999999987 678888888643322111 1 234555554 45799999999
Q ss_pred CCCccHHHHHHHhhcCCeEEEcCC
Q psy4122 121 KAERNVLPVLNNLLENREMHLEDG 144 (162)
Q Consensus 121 ~a~~~v~~~L~~lle~r~l~l~~g 144 (162)
++++++++.|+++||++.+...+|
T Consensus 590 ~~~~~~~~~Ll~~le~g~~~~~~g 613 (758)
T 3pxi_A 590 KAHPDVFNILLQVLEDGRLTDSKG 613 (758)
T ss_dssp GSCHHHHHHHHHHHHHSBCC----
T ss_pred ccCHHHHHHHHHHhccCeEEcCCC
Confidence 999999999999999988765433
No 20
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.36 E-value=1.1e-12 Score=133.58 Aligned_cols=129 Identities=12% Similarity=0.215 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEec-cCCChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICLS-RDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~-~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
++..+..+..+.+....+++++|+||||||||++++.+|+.+ +.+.....++ ..++..+|.|. +...+..|.|
T Consensus 906 ~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~--~d~~t~eW~D 983 (2695)
T 4akg_A 906 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGS--MLKATLEWRD 983 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTE--ECTTTCCEEC
T ss_pred cHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcce--ecCCCCeEec
Confidence 344444333444444456789999999999999999999775 5555555666 45688999985 3344558999
Q ss_pred cHHHHHhhc------------CcEEEEeCCCCCCccHHHHHHHhhcC-CeEEEcCCcEEecCcchHhhhhh
Q psy4122 102 QSAVRAAIE------------GRVLILEGIEKAERNVLPVLNNLLEN-REMHLEDGRFLVSASTYDKLLQV 159 (162)
Q Consensus 102 gpl~~A~~~------------G~vlllDEId~a~~~v~~~L~~lle~-r~l~l~~g~~i~~~~~f~~~~~~ 159 (162)
|.++.++|+ +.|+++| .-+++..++.||++||+ +.|.|++|++|..+++++++--+
T Consensus 984 Gils~~~R~~~~~~~~~~~~~~~WivfD--G~vD~~WIE~LNsVLDDNk~L~L~ngErI~l~~~~~llFEv 1052 (2695)
T 4akg_A 984 GLFTSILRRVNDDITGTFKNSRIWVVFD--SDLDPEYVEAMNSVLDDNKILTLPNGERLPIPPNFRILFET 1052 (2695)
T ss_dssp CSHHHHHHHHHTCCCSSCSSEEEEEEEC--SCCCHHHHHTTHHHHSTTCEEECSSSCEEECCSSCEEEEEE
T ss_pred ChHHHHHHHHHhccccccCCCCeEEEEC--CCCCHHHHHHHHHHhcCCCccccCCCCEEecCCCcEEEEEe
Confidence 999999875 4699999 88899999999999985 67899999999999999887433
No 21
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.34 E-value=2.7e-12 Score=112.05 Aligned_cols=94 Identities=17% Similarity=0.300 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH----
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA---- 107 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A---- 107 (162)
..|+.++..... .+++|+||||||||++|+.+|+.++.++..+++. .....++.. .+..|
T Consensus 39 ~~L~~~i~~~~~-~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~-~~~~~~ir~--------------~~~~a~~~~ 102 (447)
T 3pvs_A 39 KPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVIARYANADVERISAV-TSGVKEIRE--------------AIERARQNR 102 (447)
T ss_dssp SHHHHHHHHTCC-CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT-TCCHHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHcCCC-cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec-cCCHHHHHH--------------HHHHHHHhh
Confidence 677777776544 4899999999999999999999999988777653 233444332 11111
Q ss_pred -hhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 108 -AIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 108 -~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
...+++|+||||++++.+.++.|+..+|++.+.+
T Consensus 103 ~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~l 137 (447)
T 3pvs_A 103 NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITF 137 (447)
T ss_dssp HTTCCEEEEEETTTCC------CCHHHHHTTSCEE
T ss_pred hcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEE
Confidence 2356899999999999999999999999987654
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.33 E-value=4.2e-12 Score=130.57 Aligned_cols=123 Identities=13% Similarity=0.035 Sum_probs=96.9
Q ss_pred ecccCCCCCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeE
Q psy4122 18 LFSVNTDALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTA 97 (162)
Q Consensus 18 ~~~~~~~~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~ 97 (162)
+=+.+.+.+||-+-+.-.-+..++..+....+.||+|||||.+++.+|+.+|+++..++|+..++...+ |+
T Consensus 578 lG~~~rLViTPLTdrcy~tl~~Al~~~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~-g~-------- 648 (3245)
T 3vkg_A 578 LGIGERLVQTPLTDRCYLTLTQALESRMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAM-SR-------- 648 (3245)
T ss_dssp CCSCCCCCCCHHHHHHHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-HH--------
T ss_pred CCCCCCCcCChHHHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHH-HH--------
Confidence 334445567999999999999999888889999999999999999999999999999999999888765 21
Q ss_pred EEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc---------CCeEEEcCCcEEecCcchH
Q psy4122 98 IYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLE---------NREMHLEDGRFLVSASTYD 154 (162)
Q Consensus 98 ~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle---------~r~l~l~~g~~i~~~~~f~ 154 (162)
-+..++..|.|..+|||||+++++++++.+.+. .+++.+.+|+.|..+++|.
T Consensus 649 -----i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~ 709 (3245)
T 3vkg_A 649 -----IFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMG 709 (3245)
T ss_dssp -----HHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCE
T ss_pred -----HHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeE
Confidence 234466789999999999999999999888665 4455555454444444443
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.29 E-value=1.3e-12 Score=134.24 Aligned_cols=130 Identities=15% Similarity=0.152 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHH-HHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEec--c
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMS-YLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYD--Q 102 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~-lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~--g 102 (162)
+|..+.+....+-.....++|+||+||||||||.++.. +++..+.++..++++..|+++++.+... ......|.+ |
T Consensus 1286 PT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e-~~~e~~~~~~~G 1364 (3245)
T 3vkg_A 1286 PTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFD-HHCEYKRTPSGE 1364 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHH-HHEEEEECTTSC
T ss_pred cchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHh-hcceEEeccCCC
Confidence 57777777776666666789999999999999988765 4445577788899999999988876321 112334443 5
Q ss_pred HHHHHhhcCc--EEEEeCCCCCCcc------HHHHHHHhhcCCeEEEcCCcEEecCcchHhh
Q psy4122 103 SAVRAAIEGR--VLILEGIEKAERN------VLPVLNNLLENREMHLEDGRFLVSASTYDKL 156 (162)
Q Consensus 103 pl~~A~~~G~--vlllDEId~a~~~------v~~~L~~lle~r~l~l~~g~~i~~~~~f~~~ 156 (162)
++..+...|. |+++||||.+.++ +++.|++++|.|.+..+.+...+...+|+++
T Consensus 1365 ~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~v 1426 (3245)
T 3vkg_A 1365 TVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFV 1426 (3245)
T ss_dssp EEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEE
T ss_pred cccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEE
Confidence 5555555564 6678999998887 9999999999999988754444455666554
No 24
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.24 E-value=1e-11 Score=111.40 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCce-EE--EEec--------------------------
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREV-EY--ICLS-------------------------- 78 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~-~~--v~~~-------------------------- 78 (162)
...++.+...+. .+++++|+||||||||++++.+|..++... .. +.++
T Consensus 47 ~~~l~~l~~~i~---~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 47 EHAVEVIKTAAN---QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp HHHHHHHHHHHH---TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHH
T ss_pred hhhHhhcccccc---CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHH
Confidence 444555554444 578999999999999999999999886442 11 1110
Q ss_pred ---------------------------------------cCCChhhhcceeEee----cC-----eEEEeccHHHHHhhc
Q psy4122 79 ---------------------------------------RDTTEADIKQRREIV----NG-----TAIYYDQSAVRAAIE 110 (162)
Q Consensus 79 ---------------------------------------~~~~~~dL~g~~~~~----~G-----~~~~~~gpl~~A~~~ 110 (162)
...+..+|+|..... +| ......|.+.. .+
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~--a~ 201 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHR--AH 201 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHH--TT
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeee--cC
Confidence 022233444422110 11 11134555544 37
Q ss_pred CcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 111 GRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 111 G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
|++|+|||++++++++++.|+.+|+++.+.+.
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~ 233 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT 233 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCB
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEec
Confidence 89999999999999999999999999998764
No 25
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.23 E-value=7e-12 Score=101.85 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCC-------ceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQR-------EVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLI 115 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~-------p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vll 115 (162)
.+.+++|+||||||||++|+.+|+.++. ++..+++ +++.+.. .+.......+.+.. ..+++|+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~------~~l~~~~--~g~~~~~~~~~~~~--~~~~vl~ 135 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR------DDLVGQY--IGHTAPKTKEVLKR--AMGGVLF 135 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG------GGTCCSS--TTCHHHHHHHHHHH--HTTSEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH------HHhhhhc--ccccHHHHHHHHHh--cCCCEEE
Confidence 3457999999999999999999988743 5544443 2332210 01000001112222 2578999
Q ss_pred EeCCCCC---------CccHHHHHHHhhcCC
Q psy4122 116 LEGIEKA---------ERNVLPVLNNLLENR 137 (162)
Q Consensus 116 lDEId~a---------~~~v~~~L~~lle~r 137 (162)
|||++.+ ++++++.|+.+++++
T Consensus 136 iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 136 IDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp EETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred EEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 9999976 788999999999865
No 26
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.23 E-value=3.2e-12 Score=113.83 Aligned_cols=92 Identities=23% Similarity=0.267 Sum_probs=56.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccH----HHHHhhcCcEEEEeC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS----AVRAAIEGRVLILEG 118 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp----l~~A~~~G~vlllDE 118 (162)
.+.+++|+||||||||++++.+|..++.++..+++....+.+++.+.....-| ...+. +..|...+++++|||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig---~~~~~~~~~~~~a~~~~~vl~lDE 183 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG---AMPGRIIQGMKKAGKLNPVFLLDE 183 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----------------------CHHHHHHTTCSSSEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc---cCchHHHHHHHHhhccCCEEEEhh
Confidence 46789999999999999999999999999888888765555555542111001 11222 333444677999999
Q ss_pred CCCCCcc----HHHHHHHhhcCC
Q psy4122 119 IEKAERN----VLPVLNNLLENR 137 (162)
Q Consensus 119 Id~a~~~----v~~~L~~lle~r 137 (162)
|++++++ .++.|+++||..
T Consensus 184 id~l~~~~~~~~~~~LL~~ld~~ 206 (543)
T 3m6a_A 184 IDKMSSDFRGDPSSAMLEVLDPE 206 (543)
T ss_dssp SSSCC---------CCGGGTCTT
T ss_pred hhhhhhhhccCHHHHHHHHHhhh
Confidence 9999998 568899998754
No 27
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.23 E-value=4.3e-11 Score=98.24 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHH
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl 104 (162)
.-.+...+.++.++........+++.||||||||++++.+|+.++.++..+++.. ....++.. .+
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~-~~~~~i~~--------------~~ 93 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD-CKIDFVRG--------------PL 93 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT-CCHHHHHT--------------HH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc-cCHHHHHH--------------HH
Confidence 3457788888888886555545677788999999999999999998887777642 22333321 01
Q ss_pred HHHh------hcCcEEEEeCCCCCC-ccHHHHHHHhhcC
Q psy4122 105 VRAA------IEGRVLILEGIEKAE-RNVLPVLNNLLEN 136 (162)
Q Consensus 105 ~~A~------~~G~vlllDEId~a~-~~v~~~L~~lle~ 136 (162)
.... ....+++|||++.++ ++.++.|+.++++
T Consensus 94 ~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~ 132 (324)
T 3u61_B 94 TNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA 132 (324)
T ss_dssp HHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh
Confidence 1111 145799999999999 9999999999985
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.22 E-value=6.2e-11 Score=93.74 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhc-----------CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCe
Q psy4122 28 QDWLSHLRWILQKD-----------NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGT 96 (162)
Q Consensus 28 ~~~~~~L~~i~~~~-----------~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~ 96 (162)
....+.++.++... ....+++|+||||||||++|+.+|+.++.++..+++..-.+ .+.+. +.
T Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~--~~~~~-----~~ 84 (262)
T 2qz4_A 12 HEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE--VIGGL-----GA 84 (262)
T ss_dssp HHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS--SSTTH-----HH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh--hccCh-----hH
Confidence 45566666555422 23457999999999999999999999999988887753211 11110 00
Q ss_pred EEEeccHHHHHhh-cCcEEEEeCCCCC
Q psy4122 97 AIYYDQSAVRAAI-EGRVLILEGIEKA 122 (162)
Q Consensus 97 ~~~~~gpl~~A~~-~G~vlllDEId~a 122 (162)
. -....+..|.. .+.+|+|||+|.+
T Consensus 85 ~-~~~~~~~~a~~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 85 A-RVRSLFKEARARAPCIVYIDEIDAV 110 (262)
T ss_dssp H-HHHHHHHHHHHTCSEEEEEECC---
T ss_pred H-HHHHHHHHHHhcCCeEEEEeCcchh
Confidence 0 00112222322 2579999999998
No 29
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.22 E-value=7.4e-11 Score=89.32 Aligned_cols=98 Identities=12% Similarity=0.236 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC-----CceEEEEeccCCChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ-----REVEYICLSRDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg-----~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
.....+.++..+..... .+++|+||||||||++++.+++.+. .++..+++........+... +
T Consensus 22 ~~~~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 89 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHK--I--------- 89 (226)
T ss_dssp CHHHHHHHHHHHHTTCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHH--H---------
T ss_pred cHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHH--H---------
Confidence 35667777777765433 3699999999999999999998752 23444444333222222110 0
Q ss_pred cHHHH----HhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVR----AAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~----A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..+.. ......+|+|||++.++++.++.|..++++
T Consensus 90 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~ 128 (226)
T 2chg_A 90 KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM 128 (226)
T ss_dssp HHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred HHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh
Confidence 00000 013457999999999999999999999985
No 30
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.21 E-value=8.3e-12 Score=102.65 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=53.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH-----hhcCcEEEEeCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA-----AIEGRVLILEGI 119 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A-----~~~G~vlllDEI 119 (162)
..+||+||||||||++|+++|+.+|.++.+++++ ++...+. +.........+..| -..+.+|+||||
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~------~l~~~~~--g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEi 108 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSAG------ELESGNA--GEPAKLIRQRYREAAEIIRKGNMCCLFINDL 108 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHH------HHHCC-----HHHHHHHHHHHHHHHHHTTSSCCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHH------HhhhccC--chhHHHHHHHHHHHHHHHhcCCCeEEEEech
Confidence 3589999999999999999999999999988875 2221100 00000000112222 124579999999
Q ss_pred CCCCc-------------cHHHHHHHhhcCC
Q psy4122 120 EKAER-------------NVLPVLNNLLENR 137 (162)
Q Consensus 120 d~a~~-------------~v~~~L~~lle~r 137 (162)
|++.+ .+++.|+++||+.
T Consensus 109 D~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~ 139 (293)
T 3t15_A 109 DAGAGRMGGTTQYTVNNQMVNATLMNIADNP 139 (293)
T ss_dssp C--------------CHHHHHHHHHHHHHCC
T ss_pred hhhcCCCCCCccccchHHHHHHHHHHHhccc
Confidence 88765 3568899998743
No 31
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.20 E-value=1.6e-11 Score=91.23 Aligned_cols=102 Identities=16% Similarity=0.259 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCeE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGTA 97 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~~ 97 (162)
...++.+...+.. ....+++|+||||||||++++.+++.+ +.++..+.+. ++...... .|.
T Consensus 28 ~~~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~- 98 (187)
T 2p65_A 28 DTEIRRAIQILSR-RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS------SLIAGAKY-RGD- 98 (187)
T ss_dssp HHHHHHHHHHHTS-SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH------HHHHHCCS-HHH-
T ss_pred hHHHHHHHHHHhC-CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH------HhhcCCCc-hhH-
Confidence 4445555555543 234589999999999999999999886 5554444332 22110000 000
Q ss_pred EEec--cHHHHHhh---cCcEEEEeCCCCCC---------ccHHHHHHHhhcCCeE
Q psy4122 98 IYYD--QSAVRAAI---EGRVLILEGIEKAE---------RNVLPVLNNLLENREM 139 (162)
Q Consensus 98 ~~~~--gpl~~A~~---~G~vlllDEId~a~---------~~v~~~L~~lle~r~l 139 (162)
+.. ..+...+. .+.+|+|||++.+. .++++.|..+++++.+
T Consensus 99 -~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 153 (187)
T 2p65_A 99 -FEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGEL 153 (187)
T ss_dssp -HHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCS
T ss_pred -HHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCe
Confidence 000 01112221 24699999999987 6788889898887643
No 32
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.20 E-value=4.3e-11 Score=96.28 Aligned_cols=101 Identities=17% Similarity=0.178 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHh------------cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeec
Q psy4122 27 TQDWLSHLRWILQK------------DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVN 94 (162)
Q Consensus 27 ~~~~~~~L~~i~~~------------~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~ 94 (162)
-....+.|+..+.. ...+.+++|+||||||||++|+++|..++.++..+++..... ...+.
T Consensus 22 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~--~~~~~----- 94 (285)
T 3h4m_A 22 LEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK--KFIGE----- 94 (285)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC--CSTTH-----
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH--hccch-----
Confidence 35666666655543 245668999999999999999999999999988877642211 11110
Q ss_pred CeEEEeccHHHHHhh-cCcEEEEeCCCCC-----------CccHHHHHHHhhc
Q psy4122 95 GTAIYYDQSAVRAAI-EGRVLILEGIEKA-----------ERNVLPVLNNLLE 135 (162)
Q Consensus 95 G~~~~~~gpl~~A~~-~G~vlllDEId~a-----------~~~v~~~L~~lle 135 (162)
........+..+.. ...+|+|||+|.+ .++.+..|..+++
T Consensus 95 -~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 95 -GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp -HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHH
Confidence 00000011222222 2369999999986 5566677777665
No 33
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.19 E-value=7.1e-11 Score=91.28 Aligned_cols=91 Identities=14% Similarity=0.155 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC---CceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
....++.++.+.... .+.+++|+||||||||++++.+++.++ .++.++++.... ..+. .
T Consensus 36 ~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~---------------~ 97 (242)
T 3bos_A 36 NDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA--SIST---------------A 97 (242)
T ss_dssp CHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG--GSCG---------------G
T ss_pred CHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH--HHHH---------------H
Confidence 357777787777643 456999999999999999999997764 566666654211 1110 1
Q ss_pred HHHHhhcCcEEEEeCCCCCCccH--HHHHHHhhc
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNV--LPVLNNLLE 135 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v--~~~L~~lle 135 (162)
..+.+....+++|||++.++.+. +..|..+++
T Consensus 98 ~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~ 131 (242)
T 3bos_A 98 LLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYN 131 (242)
T ss_dssp GGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHH
T ss_pred HHHhccCCCEEEEeccccccCCHHHHHHHHHHHH
Confidence 12234567899999999998876 676777654
No 34
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.19 E-value=2.6e-11 Score=89.90 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCeE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGTA 97 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~~ 97 (162)
...++.+...+.. ....+++|+||||||||++++.+++.+ +.++..+++..........+ ...
T Consensus 28 ~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 100 (195)
T 1jbk_A 28 DEEIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG------EFE 100 (195)
T ss_dssp HHHHHHHHHHHTS-SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH------HHH
T ss_pred hHHHHHHHHHHhc-CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccc------cHH
Confidence 4455555555543 234589999999999999999999886 55555554431110000000 000
Q ss_pred EEeccHHHHHh-h--cCcEEEEeCCCCCC--------ccHHHHHHHhhcCCeE
Q psy4122 98 IYYDQSAVRAA-I--EGRVLILEGIEKAE--------RNVLPVLNNLLENREM 139 (162)
Q Consensus 98 ~~~~gpl~~A~-~--~G~vlllDEId~a~--------~~v~~~L~~lle~r~l 139 (162)
... ..+...+ + .+.+|+|||++.+. .++.+.|+.+++++.+
T Consensus 101 ~~~-~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 152 (195)
T 1jbk_A 101 ERL-KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL 152 (195)
T ss_dssp HHH-HHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSC
T ss_pred HHH-HHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCe
Confidence 000 0112212 2 23489999999985 5678899999887643
No 35
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.17 E-value=6.6e-11 Score=98.26 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCC--ceEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQR--EVEYICL 77 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~--p~~~v~~ 77 (162)
.+++++|+||||||||++|+.+|+.++. |+..+++
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 3468999999999999999999999985 5555554
No 36
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.17 E-value=1.6e-10 Score=96.34 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhc----CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 28 QDWLSHLRWILQKD----NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 28 ~~~~~~L~~i~~~~----~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
...++.+...+... ....+++|+||||||||||++.+|..++.++...+........++. .
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~---------------~ 95 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA---------------A 95 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH---------------H
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH---------------H
Confidence 55667777666542 1226899999999999999999999999876655443222222221 1
Q ss_pred HHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCe
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNVLPVLNNLLENRE 138 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~ 138 (162)
+...+..+.++++||++++.+.+.+.|...++.+.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~ 130 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQ 130 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred HHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcc
Confidence 12233456899999999999999999988887654
No 37
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.15 E-value=1.1e-10 Score=99.28 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--eEEEEeccC---CChhhhcceeE-eecCeEEEe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--VEYICLSRD---TTEADIKQRRE-IVNGTAIYY 100 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--~~~v~~~~~---~~~~dL~g~~~-~~~G~~~~~ 100 (162)
++.+.+..+.+-.......++++.|++||||+.+|+.++...++. +..++|..- .-.++|.|... .-.|...+.
T Consensus 135 s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~ 214 (368)
T 3dzd_A 135 HPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRK 214 (368)
T ss_dssp SHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCE
T ss_pred chHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccccc
Confidence 344444333333333345689999999999999999999887654 777777632 22456666311 112334456
Q ss_pred ccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEcC
Q psy4122 101 DQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLED 143 (162)
Q Consensus 101 ~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~~ 143 (162)
.|-+..| +||.|+||||++++++++..|+++|+++++.-.+
T Consensus 215 ~g~~~~a--~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g 255 (368)
T 3dzd_A 215 KGKLELA--DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLG 255 (368)
T ss_dssp ECHHHHT--TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBT
T ss_pred CChHhhc--CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCC
Confidence 6666544 7899999999999999999999999999876433
No 38
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.14 E-value=1.6e-10 Score=88.06 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCC--hhhhcc-----eeEeecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTT--EADIKQ-----RREIVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~--~~dL~g-----~~~~~~G~~~~ 99 (162)
-+..++.|+..+........++|+||||||||++++.+++.++............. ...+.. ...........
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK 107 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGG
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCccccc
Confidence 46677778777776544457999999999999999999988764321100000000 000000 00011100000
Q ss_pred ec--cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 100 YD--QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 100 ~~--gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+ ..+...+ ....+|+|||++.++++.++.|...+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~ 152 (250)
T 1njg_A 108 VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 152 (250)
T ss_dssp HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc
Confidence 00 0111211 1246899999999999999999999985
No 39
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.13 E-value=5.7e-11 Score=101.45 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC---CceEEEEeccCCC---hhhhcceeE-eecCeEEE
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLSRDTT---EADIKQRRE-IVNGTAIY 99 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~~~~~---~~dL~g~~~-~~~G~~~~ 99 (162)
++.+.+.++.+........++++.|++||||+.+|+.++...+ .|+..++|..-.. .++|.|... .-.|....
T Consensus 143 s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~ 222 (387)
T 1ny5_A 143 SPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 222 (387)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC
T ss_pred cHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc
Confidence 3444333333333333556899999999999999999998764 5788888864321 345665310 01133334
Q ss_pred eccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 100 YDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 100 ~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
..|.+.. .+||+|+||||+.++++++..|+++|+++++.-
T Consensus 223 ~~g~~~~--a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~ 262 (387)
T 1ny5_A 223 KEGFFEL--ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYR 262 (387)
T ss_dssp BCCHHHH--TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECC
T ss_pred cCCceee--CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEe
Confidence 5565544 478999999999999999999999999988753
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.11 E-value=1.1e-10 Score=96.09 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 28 QDWLSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
......++.++..-. .+.+++|+||||||||++++.++..+ +.++.++++... ..++.+. +..+. ...
T Consensus 20 ~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~--~~~~~~~--~~~~~----~~~ 91 (324)
T 1l8q_A 20 RLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF--AQAMVEH--LKKGT----INE 91 (324)
T ss_dssp HHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH--HHHHHHH--HHHTC----HHH
T ss_pred HHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH--HHHHHHH--HHcCc----HHH
Confidence 344556666666432 34689999999999999999999888 888888877522 2233221 11110 113
Q ss_pred HHHHhhcCcEEEEeCCCCCCc--cHHHHHHHhh
Q psy4122 104 AVRAAIEGRVLILEGIEKAER--NVLPVLNNLL 134 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~--~v~~~L~~ll 134 (162)
+..++.+..+|+||||+.++. ..+..|..++
T Consensus 92 ~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l 124 (324)
T 1l8q_A 92 FRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIF 124 (324)
T ss_dssp HHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcCcccccCChHHHHHHHHHH
Confidence 445566789999999999886 4555555544
No 41
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.11 E-value=2.9e-11 Score=102.56 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHh-----------cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCe
Q psy4122 28 QDWLSHLRWILQK-----------DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGT 96 (162)
Q Consensus 28 ~~~~~~L~~i~~~-----------~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~ 96 (162)
....+.|+.++.. .....++||+||||||||++|+++|..++.++..+++.... ....|. .
T Consensus 121 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~--~~~~g~------~ 192 (389)
T 3vfd_A 121 DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT--SKYVGE------G 192 (389)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---------------C
T ss_pred HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh--ccccch------H
Confidence 5566666655521 11346899999999999999999999999998877775321 112110 0
Q ss_pred EEEeccHHHHHhh-cCcEEEEeCCCCC-----------CccHHHHHHHhhc
Q psy4122 97 AIYYDQSAVRAAI-EGRVLILEGIEKA-----------ERNVLPVLNNLLE 135 (162)
Q Consensus 97 ~~~~~gpl~~A~~-~G~vlllDEId~a-----------~~~v~~~L~~lle 135 (162)
.......+..|.. ..++|+|||||.+ ...++..|...++
T Consensus 193 ~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 193 EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 0001112222322 3379999999887 3345556666665
No 42
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.11 E-value=8.8e-11 Score=88.85 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcC--CCCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 29 DWLSHLRWILQKDN--MSQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 29 ~~~~~L~~i~~~~~--~g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
...+.++.++.++. .|++++|+||||||||+|++.++..+ |..+.++++..- ...+... ...+.. .
T Consensus 21 ~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~--~~~~~~----~ 92 (180)
T 3ec2_A 21 RALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL--IFRLKHL--MDEGKD----T 92 (180)
T ss_dssp HHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH--HHHHHHH--HHHTCC----S
T ss_pred HHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH--HHHHHHH--hcCchH----H
Confidence 45555666665543 46789999999999999999999776 666666554321 1112110 111111 1
Q ss_pred HHHHHhhcCcEEEEeCCC--CCCccHHHHHHHhhc
Q psy4122 103 SAVRAAIEGRVLILEGIE--KAERNVLPVLNNLLE 135 (162)
Q Consensus 103 pl~~A~~~G~vlllDEId--~a~~~v~~~L~~lle 135 (162)
.+...+.+..+|+|||++ ..++.....|..+++
T Consensus 93 ~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~ 127 (180)
T 3ec2_A 93 KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIIT 127 (180)
T ss_dssp HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHH
Confidence 455667788999999998 455666667777665
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.10 E-value=1.6e-10 Score=95.27 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhc---CCCCcEEEEcCCCchHHHHHHHHHHHh---------CCceEEEEeccCCChhhhccee----E
Q psy4122 28 QDWLSHLRWILQKD---NMSQDVFLIGKPGSLRRSLAMSYLELT---------QREVEYICLSRDTTEADIKQRR----E 91 (162)
Q Consensus 28 ~~~~~~L~~i~~~~---~~g~~vlL~GppG~GKT~La~~lA~~l---------g~p~~~v~~~~~~~~~dL~g~~----~ 91 (162)
....+.+...+... ..+.+++|+||||||||++++.+++.+ +.++.+++|....+..++.... .
T Consensus 25 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~ 104 (387)
T 2v1u_A 25 EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVG 104 (387)
T ss_dssp HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhC
Confidence 45566666655443 345689999999999999999999887 6677778877665555443210 0
Q ss_pred eecCeEEEecc----HHHHHhhcCc---EEEEeCCCCCCcc--HHHHHHHhhc
Q psy4122 92 IVNGTAIYYDQ----SAVRAAIEGR---VLILEGIEKAERN--VLPVLNNLLE 135 (162)
Q Consensus 92 ~~~G~~~~~~g----pl~~A~~~G~---vlllDEId~a~~~--v~~~L~~lle 135 (162)
.......+..+ .+..++...+ +|+|||++.+... .++.|+.+++
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~ 157 (387)
T 2v1u_A 105 VRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITR 157 (387)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhh
Confidence 00000000011 2233343333 8999999998876 7777777765
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.08 E-value=1.1e-10 Score=96.71 Aligned_cols=101 Identities=11% Similarity=0.078 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHH-----------hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecC
Q psy4122 27 TQDWLSHLRWILQ-----------KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNG 95 (162)
Q Consensus 27 ~~~~~~~L~~i~~-----------~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G 95 (162)
-....+.|+.++. .....+++||+||||||||++|+++|+.++.++..+++..- .+...|.
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l--~~~~~g~------ 94 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL--VSKWMGE------ 94 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH--HTTTGGG------
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH--hhcccch------
Confidence 4666777776652 11123469999999999999999999999999888876421 1111110
Q ss_pred eEEEeccHHHHHhh-cCcEEEEeCCCCCCcc-----------HHHHHHHhhc
Q psy4122 96 TAIYYDQSAVRAAI-EGRVLILEGIEKAERN-----------VLPVLNNLLE 135 (162)
Q Consensus 96 ~~~~~~gpl~~A~~-~G~vlllDEId~a~~~-----------v~~~L~~lle 135 (162)
........+..|.. .+++|+|||||.+.+. ++..|+..++
T Consensus 95 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 95 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 00000011222222 3479999999987652 3556666665
No 45
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.07 E-value=4.1e-10 Score=94.76 Aligned_cols=101 Identities=12% Similarity=0.069 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHh-----------cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCe
Q psy4122 28 QDWLSHLRWILQK-----------DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGT 96 (162)
Q Consensus 28 ~~~~~~L~~i~~~-----------~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~ 96 (162)
....+.|+.++.. ....+++||+||||||||++|+++|..++.++..+++..... ...|. .
T Consensus 90 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~--~~~g~------~ 161 (357)
T 3d8b_A 90 EFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS--KWVGE------G 161 (357)
T ss_dssp HHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC--SSTTH------H
T ss_pred HHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc--cccch------H
Confidence 4555566655532 123568999999999999999999999999988887753211 11110 0
Q ss_pred EEEeccHHHHHh-hcCcEEEEeCCCCCCc-----------cHHHHHHHhhcC
Q psy4122 97 AIYYDQSAVRAA-IEGRVLILEGIEKAER-----------NVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~gpl~~A~-~~G~vlllDEId~a~~-----------~v~~~L~~lle~ 136 (162)
.......+..|. ..+++|+|||||.+.+ .+++.|+..++.
T Consensus 162 ~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 213 (357)
T 3d8b_A 162 EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213 (357)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc
Confidence 000011122222 2357999999987644 345556666653
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.07 E-value=1.8e-10 Score=92.52 Aligned_cols=85 Identities=22% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEee-cCeEEEeccHHHHHh-hcCcEEEEeCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIV-NGTAIYYDQSAVRAA-IEGRVLILEGIEK 121 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~-~G~~~~~~gpl~~A~-~~G~vlllDEId~ 121 (162)
..++||+||||||||++|+.+|+..+.++..+++.. ++.|..... .+. ....+..+. ..+++|+||||+.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~-----~~~g~~~~~~~~~---~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD-----KMIGFSETAKCQA---MKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG-----GCTTCCHHHHHHH---HHHHHHHHHTSSEEEEEECCHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH-----HhcCCchHHHHHH---HHHHHHHHHhcCCcEEEEEChhh
Confidence 347999999999999999999999999988887643 333311000 000 001122232 2357999999988
Q ss_pred C----------CccHHHHHHHhhcC
Q psy4122 122 A----------ERNVLPVLNNLLEN 136 (162)
Q Consensus 122 a----------~~~v~~~L~~lle~ 136 (162)
+ ...++..|..+++.
T Consensus 136 l~~~~~~~~~~~~~~l~~L~~~~~~ 160 (272)
T 1d2n_A 136 LLDYVPIGPRFSNLVLQALLVLLKK 160 (272)
T ss_dssp HTTCBTTTTBCCHHHHHHHHHHTTC
T ss_pred hhccCCCChhHHHHHHHHHHHHhcC
Confidence 6 44566777777663
No 47
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.05 E-value=3.3e-10 Score=91.67 Aligned_cols=90 Identities=12% Similarity=0.096 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHh----------c-CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecC
Q psy4122 27 TQDWLSHLRWILQK----------D-NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNG 95 (162)
Q Consensus 27 ~~~~~~~L~~i~~~----------~-~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G 95 (162)
.....+.|+.++.. . ..+++++|+||||||||++|+.+|..++.++..+++..... ...+. +
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~--~~~~~-----~ 98 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS--KYVGD-----G 98 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS--SSCSC-----H
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh--cccch-----H
Confidence 35566666665532 1 13568999999999999999999999999988777753211 11110 0
Q ss_pred eEEEeccHHHHHh-hcCcEEEEeCCCCCCc
Q psy4122 96 TAIYYDQSAVRAA-IEGRVLILEGIEKAER 124 (162)
Q Consensus 96 ~~~~~~gpl~~A~-~~G~vlllDEId~a~~ 124 (162)
. ......+..+. ..+++|+|||++.+.+
T Consensus 99 ~-~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 99 E-KLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp H-HHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred H-HHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 0 00001122222 2457999999988744
No 48
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.04 E-value=3.3e-10 Score=93.00 Aligned_cols=109 Identities=12% Similarity=0.162 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC------ceEEEEeccCCChhhhccee-EeecCeE-EE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR------EVEYICLSRDTTEADIKQRR-EIVNGTA-IY 99 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~------p~~~v~~~~~~~~~dL~g~~-~~~~G~~-~~ 99 (162)
...++.++..+..... .+++|+||||||||++++.+|+.++. .+..+++........+.... ....... ..
T Consensus 43 ~~~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 121 (353)
T ss_dssp CTTHHHHHHHTTCTTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHhcCCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhccccc
Confidence 4455666666554333 36999999999999999999988653 23333333222222221100 0000000 00
Q ss_pred eccHH-HHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 100 YDQSA-VRAAIEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 100 ~~gpl-~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
..... ........+++|||+++++++.++.|..++++.
T Consensus 122 ~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~ 160 (353)
T 1sxj_D 122 SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY 160 (353)
T ss_dssp CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT
T ss_pred chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc
Confidence 00000 000123469999999999999999999999854
No 49
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.03 E-value=1.3e-09 Score=90.18 Aligned_cols=109 Identities=15% Similarity=0.061 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhc---CCCC--cEEEEcCCCchHHHHHHHHHHHh----CCceEEEEeccCCChhhhccee--Ee--ec
Q psy4122 28 QDWLSHLRWILQKD---NMSQ--DVFLIGKPGSLRRSLAMSYLELT----QREVEYICLSRDTTEADIKQRR--EI--VN 94 (162)
Q Consensus 28 ~~~~~~L~~i~~~~---~~g~--~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~~~~~~~dL~g~~--~~--~~ 94 (162)
...++.+...+... ..+. +++|+||||||||++++.++..+ +.++.+++|....+..++.... .+ ..
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~ 102 (389)
T 1fnn_A 23 EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPF 102 (389)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccC
Confidence 44555565555543 2334 79999999999999999999888 5566777776665554443210 00 00
Q ss_pred CeEEEeccHHHH----Hhh---cCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 95 GTAIYYDQSAVR----AAI---EGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 95 G~~~~~~gpl~~----A~~---~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+...+....+.. .+. ...+|+|||++.++++++..|..++++
T Consensus 103 ~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 103 PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQE 151 (389)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHh
Confidence 000011111111 121 234899999999999999999998864
No 50
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.02 E-value=8.1e-10 Score=93.08 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=53.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEKA 122 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~a 122 (162)
.+++||+||||||||++|+++|..++.++..+++. ++...+. +.........+..|. ..+.+|+|||||.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~------~l~~~~~--g~~~~~~~~~f~~a~~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS------DLVSKWM--GESEKLVKQLFAMARENKPSIIFIDQVDAL 155 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHH------HHHSCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGG
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHH------HHhhhhc--chHHHHHHHHHHHHHHcCCeEEEEechHhh
Confidence 45799999999999999999999999998877664 3332110 000000011122222 24579999999998
Q ss_pred Ccc-----------HHHHHHHhhc
Q psy4122 123 ERN-----------VLPVLNNLLE 135 (162)
Q Consensus 123 ~~~-----------v~~~L~~lle 135 (162)
.+. +++.|+..++
T Consensus 156 ~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 156 TGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp TC------CTHHHHHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHHHHHhh
Confidence 753 4566666665
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.02 E-value=1.2e-09 Score=89.75 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHh------------cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecC
Q psy4122 28 QDWLSHLRWILQK------------DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNG 95 (162)
Q Consensus 28 ~~~~~~L~~i~~~------------~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G 95 (162)
....+.|+.++.. ...+++++|+||||||||++|+.+|..++.++..+++..- .+.+.|.. ..
T Consensus 21 ~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l--~~~~~g~~---~~ 95 (301)
T 3cf0_A 21 EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL--LTMWFGES---EA 95 (301)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH--HHHHHTTC---TT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH--HhhhcCch---HH
Confidence 4555666655542 2456789999999999999999999999988776655311 11222210 00
Q ss_pred eEEEeccHHHHHhh-cCcEEEEeCCCCCCc--------------cHHHHHHHhhc
Q psy4122 96 TAIYYDQSAVRAAI-EGRVLILEGIEKAER--------------NVLPVLNNLLE 135 (162)
Q Consensus 96 ~~~~~~gpl~~A~~-~G~vlllDEId~a~~--------------~v~~~L~~lle 135 (162)
. ..+.+..|.. ..++++||||+.+.+ .++..|+..++
T Consensus 96 ~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 96 N---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp H---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 0 0112333332 347999999986432 34666777776
No 52
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.2e-10 Score=98.32 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~ 121 (162)
..+.+||+||||||||.+|+++|..++.++..++++.-. +..+|. +. .-....+..|-. ...+|+|||||.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~--sk~vGe-----se-~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV--QKYIGE-----GS-RMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS--CSSTTH-----HH-HHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh--ccccch-----HH-HHHHHHHHHHHHhCCceEeeecchh
Confidence 446799999999999999999999999998888775321 111210 00 000112333333 347899999998
Q ss_pred CC
Q psy4122 122 AE 123 (162)
Q Consensus 122 a~ 123 (162)
+.
T Consensus 253 i~ 254 (405)
T 4b4t_J 253 IG 254 (405)
T ss_dssp CT
T ss_pred hc
Confidence 64
No 53
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=5.7e-10 Score=98.31 Aligned_cols=109 Identities=10% Similarity=0.037 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcC----------------CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee
Q psy4122 27 TQDWLSHLRWILQKDN----------------MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR 90 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~----------------~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~ 90 (162)
.+...+.|+.++..+. ..++++|+||||||||++|+.+|+.+|.++..+++........+....
T Consensus 44 ~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i 123 (516)
T 1sxj_A 44 NKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGV 123 (516)
T ss_dssp CHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTG
T ss_pred CHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHH
Confidence 4677777877776532 235899999999999999999999999988777775433322111000
Q ss_pred -EeecCeEEEeccHHHH------HhhcCcEEEEeCCCCCCccH---HHHHHHhhcCC
Q psy4122 91 -EIVNGTAIYYDQSAVR------AAIEGRVLILEGIEKAERNV---LPVLNNLLENR 137 (162)
Q Consensus 91 -~~~~G~~~~~~gpl~~------A~~~G~vlllDEId~a~~~v---~~~L~~lle~r 137 (162)
...+.. . ..+-+.. +...+.+|+|||++.+..+. +..|+.++++.
T Consensus 124 ~~~~~~~-~-~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 124 KNALDNM-S-VVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT 178 (516)
T ss_dssp GGGTTBC-C-STTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC
T ss_pred HHHhccc-c-HHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc
Confidence 000000 0 0000000 11345799999999987643 47788887743
No 54
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=6.8e-10 Score=89.90 Aligned_cols=102 Identities=12% Similarity=0.197 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc-----eEEEEeccCCChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE-----VEYICLSRDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p-----~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
-+...+.|+.++...... +++|+||||||||++|+.+|+.++.+ +..+++........+... +.. +. ..
T Consensus 30 ~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~-~~ 103 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREK--VKE--FA-RT 103 (327)
T ss_dssp CHHHHHHHHHHHHHTCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHH--HHH--HH-HS
T ss_pred CHHHHHHHHHHHHcCCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHH--HHH--HH-hh
Confidence 467778888777764333 79999999999999999999886422 223332211111111100 000 00 00
Q ss_pred cHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.|+. -....+++|||+++++++.++.|..++++
T Consensus 104 ~~~~--~~~~~vliiDe~~~l~~~~~~~L~~~le~ 136 (327)
T 1iqp_A 104 KPIG--GASFKIIFLDEADALTQDAQQALRRTMEM 136 (327)
T ss_dssp CCGG--GCSCEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred CCcC--CCCCeEEEEeCCCcCCHHHHHHHHHHHHh
Confidence 0100 02357999999999999999999999985
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.00 E-value=2e-09 Score=88.98 Aligned_cols=107 Identities=15% Similarity=0.110 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEE--EEeccC--------CChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEY--ICLSRD--------TTEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~--v~~~~~--------~~~~dL~g~~~~~~G~ 96 (162)
-+...+.|+..+........++|+||+|||||++++.+|+.++..... ..|..- ....++. .+....
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 97 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLI---EIDAAS 97 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCE---EEETTC
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceE---Eecccc
Confidence 467778888887765555568999999999999999999988643210 001000 0000111 111110
Q ss_pred EEEec--cHHHHHhh------cCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 97 AIYYD--QSAVRAAI------EGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 97 ~~~~~--gpl~~A~~------~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
....+ ..+...+. ...+++|||++.++++.++.|...+++
T Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~ 145 (373)
T 1jr3_A 98 RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE 145 (373)
T ss_dssp SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc
Confidence 00000 01222222 236999999999999999999999986
No 56
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.00 E-value=6.1e-10 Score=85.36 Aligned_cols=98 Identities=12% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCCC---CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 30 WLSHLRWILQKDNMS---QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g---~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
..+.++.++.....+ .+++|+||||||||++++.++..+ +.++.++++... ..++... ...+. + ..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~--~--~~ 108 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL--FRELKHS--LQDQT--M--NE 108 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH--HHHHHHC-----CC--C--HH
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH--HHHHHHH--hccch--H--HH
Confidence 455666666655322 689999999999999999999876 566666666421 1222211 11111 1 13
Q ss_pred HHHHhhcCcEEEEeCCCC--CCccHHH-HHHHhhc
Q psy4122 104 AVRAAIEGRVLILEGIEK--AERNVLP-VLNNLLE 135 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~--a~~~v~~-~L~~lle 135 (162)
+...+.+..+|+|||++. ..+..+. .|..+++
T Consensus 109 ~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~ 143 (202)
T 2w58_A 109 KLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQ 143 (202)
T ss_dssp HHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHH
Confidence 445556678999999965 4443333 3333443
No 57
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.99 E-value=2e-09 Score=89.50 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHh-----------cCCCCcEEEEcCCCchHHHHHHHHHHHh-CCceEEEEeccCCChhhhcceeEeecC
Q psy4122 28 QDWLSHLRWILQK-----------DNMSQDVFLIGKPGSLRRSLAMSYLELT-QREVEYICLSRDTTEADIKQRREIVNG 95 (162)
Q Consensus 28 ~~~~~~L~~i~~~-----------~~~g~~vlL~GppG~GKT~La~~lA~~l-g~p~~~v~~~~~~~~~dL~g~~~~~~G 95 (162)
....+.|+.++.. ....+++||+||||||||++|+++|..+ +.++..+++..-.. ...|.
T Consensus 18 ~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~--~~~g~------ 89 (322)
T 1xwi_A 18 EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS--KWLGE------ 89 (322)
T ss_dssp HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC--SSCCS------
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh--hhhhH------
Confidence 5566666655531 1223579999999999999999999988 78877777653211 11110
Q ss_pred eEEEeccHHHHHh-hcCcEEEEeCCCCCC
Q psy4122 96 TAIYYDQSAVRAA-IEGRVLILEGIEKAE 123 (162)
Q Consensus 96 ~~~~~~gpl~~A~-~~G~vlllDEId~a~ 123 (162)
.......-+..|. ....+|+|||||.+.
T Consensus 90 ~~~~~~~lf~~a~~~~~~vl~iDEid~l~ 118 (322)
T 1xwi_A 90 SEKLVKNLFQLARENKPSIIFIDEIDSLC 118 (322)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEETTTGGG
T ss_pred HHHHHHHHHHHHHhcCCcEEEeecHHHhc
Confidence 0000001111222 234799999999873
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.99 E-value=3.9e-10 Score=91.03 Aligned_cols=98 Identities=12% Similarity=0.247 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
.+...+.++..+...... +++|+||||||||++|+.+|+.+ +.++..+++.......++... +
T Consensus 22 ~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------- 89 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHK--I--------- 89 (319)
T ss_dssp CHHHHHHHHTTTTTTCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHH--H---------
T ss_pred CHHHHHHHHHHHhCCCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHH--H---------
Confidence 355666666665543222 69999999999999999999876 223444554432222111100 0
Q ss_pred cHHHH--Hh--hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVR--AA--IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~--A~--~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
..+.. .+ ....+++|||++.++++.++.|..++++
T Consensus 90 ~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~ 128 (319)
T 2chq_A 90 KEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM 128 (319)
T ss_dssp HHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS
T ss_pred HHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh
Confidence 00000 01 2357999999999999999999999986
No 59
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=6.9e-10 Score=97.01 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~ 121 (162)
..+.+||+||||||||++|+++|..+|.++..++++.-.+ ...|. +..-....+..|- ..+.+|+|||||.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s--k~~Ge------se~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD--KYIGE------SARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC--SSSSH------HHHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc--ccchH------HHHHHHHHHHHHHhcCCceeeeecccc
Confidence 3457999999999999999999999999988887753211 11110 0000011223333 2457999999997
Q ss_pred CC
Q psy4122 122 AE 123 (162)
Q Consensus 122 a~ 123 (162)
+.
T Consensus 286 i~ 287 (437)
T 4b4t_L 286 IG 287 (437)
T ss_dssp SS
T ss_pred cc
Confidence 53
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.97 E-value=2e-10 Score=91.76 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~ 121 (162)
..++++|+||||||||++|+.+|..++.|+..+++..- .+.+.+. +.. -....+..|.. ..++|+|||+|.
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~--~~~~~~~----~~~--~~~~~~~~a~~~~~~vl~iDEid~ 114 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSF--IEMFVGL----GAS--RVRDLFETAKKQAPSIIFIDEIDA 114 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTT--TTSCSSS----CSS--SSSTTHHHHHHSCSCEEEESCGGG
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHH--HHhhcch----HHH--HHHHHHHHHHhcCCeEEEEeChhh
Confidence 34579999999999999999999999999876665422 1112221 000 01123444443 347999999998
Q ss_pred CCcc
Q psy4122 122 AERN 125 (162)
Q Consensus 122 a~~~ 125 (162)
+.++
T Consensus 115 l~~~ 118 (268)
T 2r62_A 115 IGKS 118 (268)
T ss_dssp TTC-
T ss_pred hccc
Confidence 8664
No 61
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.97 E-value=7e-10 Score=97.86 Aligned_cols=100 Identities=11% Similarity=0.177 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHh------------cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecC
Q psy4122 28 QDWLSHLRWILQK------------DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNG 95 (162)
Q Consensus 28 ~~~~~~L~~i~~~------------~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G 95 (162)
....+.|+.++.. .....++||+||||||||++|+++|...+.++..++|..- .+++.|. ..+
T Consensus 210 ~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l--~~~~~g~---~~~ 284 (489)
T 3hu3_A 210 RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEI--MSKLAGE---SES 284 (489)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHH--HTSCTTH---HHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHh--hhhhcch---hHH
Confidence 4455556555543 2345689999999999999999999999999988887522 1122220 000
Q ss_pred eEEEeccHHHHHhhc-CcEEEEeCCCCCCc-----------cHHHHHHHhhc
Q psy4122 96 TAIYYDQSAVRAAIE-GRVLILEGIEKAER-----------NVLPVLNNLLE 135 (162)
Q Consensus 96 ~~~~~~gpl~~A~~~-G~vlllDEId~a~~-----------~v~~~L~~lle 135 (162)
. ..+.+..|... .++|+|||||.+.+ .+++.|+.+++
T Consensus 285 ~---~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 285 N---LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp H---HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence 0 11233334322 35999999977655 56788888887
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.97 E-value=7.6e-10 Score=93.03 Aligned_cols=91 Identities=7% Similarity=-0.030 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC----------CceEEEEeccCCChhhhccee--EeecCeEEEecc--HHH---
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ----------REVEYICLSRDTTEADIKQRR--EIVNGTAIYYDQ--SAV--- 105 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg----------~p~~~v~~~~~~~~~dL~g~~--~~~~G~~~~~~g--pl~--- 105 (162)
.+.+++|+||||||||++++.+++.+. ..+.+++|....+..++.... .+.+-...+... .+-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 445899999999999999999998873 234456665655554432100 011101111111 111
Q ss_pred HHh---hc-CcEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 106 RAA---IE-GRVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 106 ~A~---~~-G~vlllDEId~a~~~v~~~L~~lle 135 (162)
..+ .. ..+++|||||++. .+++|+++++
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~ 155 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLL--SEKILQYFEK 155 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHH
T ss_pred HHhhhccCCceEEEEecHHHhh--cchHHHHHHh
Confidence 111 11 2588999999998 5678888875
No 63
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.97 E-value=8.9e-10 Score=95.55 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccCCChhhhcceeEeecCeEEEecc
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ 102 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~g 102 (162)
......++.++..-....+++|+||||||||+|++.+|..+ +.++.++++..- ..++... +..+. ..
T Consensus 114 ~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~~~~--~~~~~----~~ 185 (440)
T 2z4s_A 114 SFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDS--MKEGK----LN 185 (440)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHHHHH--HHTTC----HH
T ss_pred HHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHHHHH--HHccc----HH
Confidence 33455555555543224689999999999999999999887 777777766432 2233321 11111 11
Q ss_pred HHHHHhh-cCcEEEEeCCCCCCc--cHHHHHHHhh
Q psy4122 103 SAVRAAI-EGRVLILEGIEKAER--NVLPVLNNLL 134 (162)
Q Consensus 103 pl~~A~~-~G~vlllDEId~a~~--~v~~~L~~ll 134 (162)
.+..+++ ...+|+|||++.+.. ..+..|..++
T Consensus 186 ~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l 220 (440)
T 2z4s_A 186 EFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTF 220 (440)
T ss_dssp HHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHH
Confidence 3445566 778999999999886 4566665554
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1e-09 Score=88.71 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC-----CceEEEEeccCCChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ-----REVEYICLSRDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg-----~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
-+...+.|+..+...... +++|+||||+|||++|+.+|+.+. .++..+++.......++..
T Consensus 26 ~~~~~~~l~~~l~~~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~------------- 91 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRN------------- 91 (323)
T ss_dssp CTHHHHHHHHHHHSCCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHT-------------
T ss_pred CHHHHHHHHHHHHcCCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHH-------------
Confidence 356677788777754443 599999999999999999998763 2233333322222222221
Q ss_pred cHHHHH-------h-h-cCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVRA-------A-I-EGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~A-------~-~-~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+.+. + . ...+++|||++.++++.++.|..++++
T Consensus 92 --~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~ 133 (323)
T 1sxj_B 92 --QIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL 133 (323)
T ss_dssp --HHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH
T ss_pred --HHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhc
Confidence 1111 1 1 246999999999999999999999985
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.95 E-value=2e-09 Score=80.46 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
+......++.+ .++.++|+||+|+|||+|++.++... |....++... ++...
T Consensus 24 n~~~~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~------~~~~~-------------- 78 (149)
T 2kjq_A 24 NAELVYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA------SMPLT-------------- 78 (149)
T ss_dssp THHHHHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT------TSCCC--------------
T ss_pred cHHHHHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH------HhhHH--------------
Confidence 34444444444 67899999999999999999999877 5555555442 12110
Q ss_pred HHHHhhcCcEEEEeCCCCCCccHHHHHHHhhc
Q psy4122 104 AVRAAIEGRVLILEGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~a~~~v~~~L~~lle 135 (162)
..+.+..+|+|||++...+.....|..+++
T Consensus 79 --~~~~~~~lLilDE~~~~~~~~~~~l~~li~ 108 (149)
T 2kjq_A 79 --DAAFEAEYLAVDQVEKLGNEEQALLFSIFN 108 (149)
T ss_dssp --GGGGGCSEEEEESTTCCCSHHHHHHHHHHH
T ss_pred --HHHhCCCEEEEeCccccChHHHHHHHHHHH
Confidence 113456899999999988866666666655
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.93 E-value=5e-09 Score=92.30 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhc-----------CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCe
Q psy4122 28 QDWLSHLRWILQKD-----------NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGT 96 (162)
Q Consensus 28 ~~~~~~L~~i~~~~-----------~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~ 96 (162)
....+.++.++..+ ...++++|+||||||||++|+.+|...+.|+..+++..-.. .+.|. ++.
T Consensus 22 ~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~--~~~g~----~~~ 95 (476)
T 2ce7_A 22 EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE--LFVGV----GAA 95 (476)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT--CCTTH----HHH
T ss_pred HHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH--HHhcc----cHH
Confidence 45555666555432 23457999999999999999999999999988887753221 11210 000
Q ss_pred EEEeccHHHHHhh-cCcEEEEeCCCCCCcc
Q psy4122 97 AIYYDQSAVRAAI-EGRVLILEGIEKAERN 125 (162)
Q Consensus 97 ~~~~~gpl~~A~~-~G~vlllDEId~a~~~ 125 (162)
-....+..|.. ...+|+|||||.+.++
T Consensus 96 --~~r~lf~~A~~~~p~ILfIDEid~l~~~ 123 (476)
T 2ce7_A 96 --RVRDLFAQAKAHAPCIVFIDEIDAVGRH 123 (476)
T ss_dssp --HHHHHHHHHHHTCSEEEEEETGGGTCCC
T ss_pred --HHHHHHHHHHhcCCCEEEEechhhhhhh
Confidence 01112334433 3469999999987653
No 67
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.91 E-value=2.9e-09 Score=88.28 Aligned_cols=109 Identities=10% Similarity=0.074 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhcC---CCCcEEEEcCCCchHHHHHHHHHHHh-----------CCceEEEEeccCC-Chhhhccee--
Q psy4122 28 QDWLSHLRWILQKDN---MSQDVFLIGKPGSLRRSLAMSYLELT-----------QREVEYICLSRDT-TEADIKQRR-- 90 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~---~g~~vlL~GppG~GKT~La~~lA~~l-----------g~p~~~v~~~~~~-~~~dL~g~~-- 90 (162)
...++.+...+..+. ...+++|+||||||||++++.+++.+ +.++.+++|.... +..++....
T Consensus 26 ~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 105 (384)
T 2qby_B 26 EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAG 105 (384)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHH
Confidence 455566665555432 23469999999999999999999887 8888888876544 433332100
Q ss_pred Ee---ecCeEEEeccH----HHHHhhcCc-EEEEeCCCCCCccH-HHH-HHHhhcC
Q psy4122 91 EI---VNGTAIYYDQS----AVRAAIEGR-VLILEGIEKAERNV-LPV-LNNLLEN 136 (162)
Q Consensus 91 ~~---~~G~~~~~~gp----l~~A~~~G~-vlllDEId~a~~~v-~~~-L~~lle~ 136 (162)
.+ ..+........ +...+...+ +|+|||++.+.... .+. |..+++.
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 161 (384)
T 2qby_B 106 KLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS 161 (384)
T ss_dssp HHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC
Confidence 00 00000000111 223343434 99999999876542 455 5565553
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.91 E-value=3.9e-09 Score=83.94 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
.++++|+||||||||++|+.+|..++.|+..+++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~ 79 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 79 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHH
Confidence 45799999999999999999999999998766553
No 69
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.90 E-value=2.5e-09 Score=92.76 Aligned_cols=89 Identities=12% Similarity=0.052 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHh-----------cCCCCcEEEEcCCCchHHHHHHHHHHHh-CCceEEEEeccCCChhhhcceeEeecC
Q psy4122 28 QDWLSHLRWILQK-----------DNMSQDVFLIGKPGSLRRSLAMSYLELT-QREVEYICLSRDTTEADIKQRREIVNG 95 (162)
Q Consensus 28 ~~~~~~L~~i~~~-----------~~~g~~vlL~GppG~GKT~La~~lA~~l-g~p~~~v~~~~~~~~~dL~g~~~~~~G 95 (162)
....+.|+.++.. ....+++||+||||||||++|+++|..+ +.++..+++..- .+...|.
T Consensus 140 ~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l--~~~~~g~------ 211 (444)
T 2zan_A 140 EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL--VSKWLGE------ 211 (444)
T ss_dssp HHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----------------
T ss_pred HHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH--Hhhhcch------
Confidence 5666677665521 1234679999999999999999999998 777766655421 1111110
Q ss_pred eEEEeccHHHHHh-hcCcEEEEeCCCCCCc
Q psy4122 96 TAIYYDQSAVRAA-IEGRVLILEGIEKAER 124 (162)
Q Consensus 96 ~~~~~~gpl~~A~-~~G~vlllDEId~a~~ 124 (162)
........+..|. ...++|+|||||.+.+
T Consensus 212 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 212 SEKLVKNLFQLARENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp CCCTHHHHHHHHHHSCSEEEEESCTTTTCC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhcc
Confidence 0000011122222 2357999999998743
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=7.6e-10 Score=96.65 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=46.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh-hcCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA-IEGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~-~~G~vlllDEId~ 121 (162)
..+.+||+||||||||++|+++|..+|.++..++++ ++...+ .+.+..-....+..|- ....+|++||||.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s------~l~~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDa 285 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP------QLVQMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDA 285 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG------GGCSSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh------hhhhcc--cchHHHHHHHHHHHHHhcCCeEEeecchhh
Confidence 345799999999999999999999999998877764 333210 0000000001122232 3457999999975
Q ss_pred C
Q psy4122 122 A 122 (162)
Q Consensus 122 a 122 (162)
+
T Consensus 286 l 286 (434)
T 4b4t_M 286 I 286 (434)
T ss_dssp H
T ss_pred h
Confidence 3
No 71
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.88 E-value=9.3e-09 Score=85.61 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEE--EEecc--------CCChhhhcceeEeec---
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEY--ICLSR--------DTTEADIKQRREIVN--- 94 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~--v~~~~--------~~~~~dL~g~~~~~~--- 94 (162)
+...+.|...++.....+.+||+||||+|||++|+.+|+.+..+... ..|.. .-...|+. .+..
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~---~~~~~~~ 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYY---TLAPEKG 84 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEE---EECCCTT
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEE---EEecccc
Confidence 44556666666655555459999999999999999999987643210 00000 00001111 0100
Q ss_pred CeEEEec--cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 95 GTAIYYD--QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 95 G~~~~~~--gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
++..-.+ ..+.+.+ ....+++|||+|+++.+.++.|+..+|+.
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep 135 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP 135 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC
Confidence 0000000 0111111 12369999999999999999999999963
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.87 E-value=1.5e-09 Score=90.11 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCC--CCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEeccCCChhhhcceeEeecCeEEEeccH
Q psy4122 30 WLSHLRWILQKDNM--SQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICLSRDTTEADIKQRREIVNGTAIYYDQS 103 (162)
Q Consensus 30 ~~~~L~~i~~~~~~--g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gp 103 (162)
.++.+..++..+.. +.+++|+||||||||+|+..+|..+ |.++.++++..- ..++... ..+|. + ..
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l--~~~l~~~--~~~~~--~--~~ 207 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF--AIDVKNA--ISNGS--V--KE 207 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH--HHHHHCC--CC--------CC
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH--HHHHHHH--hccch--H--HH
Confidence 34444455555432 5799999999999999999999744 467766666421 2233321 12222 1 12
Q ss_pred HHHHhhcCcEEEEeCCCC
Q psy4122 104 AVRAAIEGRVLILEGIEK 121 (162)
Q Consensus 104 l~~A~~~G~vlllDEId~ 121 (162)
+...+.+..+|+||||..
T Consensus 208 ~~~~~~~~~lLiiDdig~ 225 (308)
T 2qgz_A 208 EIDAVKNVPVLILDDIGA 225 (308)
T ss_dssp TTHHHHTSSEEEEETCCC
T ss_pred HHHHhcCCCEEEEcCCCC
Confidence 345566778999999954
No 73
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.2e-09 Score=95.52 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~ 121 (162)
..+.+||+||||||||.+|+++|..++.++..++++ ++...+. +.+.......+..|-. ...+|+|||||.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s------~l~sk~v--Gesek~ir~lF~~Ar~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS------ELIQKYL--GDGPRLCRQIFKVAGENAPSIVFIDEIDA 286 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG------GGCCSSS--SHHHHHHHHHHHHHHHTCSEEEEEEEESS
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH------HhhhccC--chHHHHHHHHHHHHHhcCCcEEEEehhhh
Confidence 345699999999999999999999999998877765 3332100 0000000011222322 357999999987
Q ss_pred CC
Q psy4122 122 AE 123 (162)
Q Consensus 122 a~ 123 (162)
+.
T Consensus 287 i~ 288 (437)
T 4b4t_I 287 IG 288 (437)
T ss_dssp SS
T ss_pred hc
Confidence 53
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.85 E-value=2.2e-09 Score=99.71 Aligned_cols=105 Identities=12% Similarity=0.213 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCeE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGTA 97 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~~ 97 (162)
...++.+..++... ...+++|+||||||||++|+.+|..+ +.++..+.+.......... |.+
T Consensus 176 ~~~i~~l~~~l~~~-~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~-------g~~ 247 (854)
T 1qvr_A 176 DEEIRRVIQILLRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR-------GEF 247 (854)
T ss_dssp HHHHHHHHHHHHCS-SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------CH
T ss_pred HHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc-------hHH
Confidence 45555555555443 23489999999999999999999887 6665555443211111111 110
Q ss_pred EEeccHHHHHhhc---CcEEEEeCCCCCC--------ccHHHHHHHhhcCCeEE
Q psy4122 98 IYYDQSAVRAAIE---GRVLILEGIEKAE--------RNVLPVLNNLLENREMH 140 (162)
Q Consensus 98 ~~~~gpl~~A~~~---G~vlllDEId~a~--------~~v~~~L~~lle~r~l~ 140 (162)
...-..+...+.. ..+|+|||++.+. .++.+.|.++++++.+.
T Consensus 248 ~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~ 301 (854)
T 1qvr_A 248 EERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELR 301 (854)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeE
Confidence 0000112222322 3488999999987 66778899999887653
No 75
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=9.5e-09 Score=85.20 Aligned_cols=98 Identities=12% Similarity=0.226 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc---eEEEEecc--CCChhhhcceeEeecCeEEEec
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE---VEYICLSR--DTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p---~~~v~~~~--~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
.+..++.|...+...... |++|+||||||||++++.+|..+..+ .....++. .....++... +
T Consensus 30 ~~~~~~~L~~~i~~g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~--i--------- 97 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQ--I--------- 97 (340)
T ss_dssp CHHHHHHHHHHHHTTCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTH--H---------
T ss_pred cHHHHHHHHHHHhcCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHH--H---------
Confidence 367788888777764433 49999999999999999999876432 12233321 1112111100 0
Q ss_pred cHHHHH---h-hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVRA---A-IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~A---~-~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
+.+... + ....++++||++.++.+.++.|..++|+
T Consensus 98 ~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~ 136 (340)
T 1sxj_C 98 KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER 136 (340)
T ss_dssp HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 000000 1 1247899999999999999999999985
No 76
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.85 E-value=6.9e-09 Score=85.29 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhc---CCCCcEEEEcCCCchHHHHHHHHHHHh------CCceEEEEeccCCChhhhccee----E--e
Q psy4122 28 QDWLSHLRWILQKD---NMSQDVFLIGKPGSLRRSLAMSYLELT------QREVEYICLSRDTTEADIKQRR----E--I 92 (162)
Q Consensus 28 ~~~~~~L~~i~~~~---~~g~~vlL~GppG~GKT~La~~lA~~l------g~p~~~v~~~~~~~~~dL~g~~----~--~ 92 (162)
..-++.|...+... ..+.+++|+||+|||||++++.++..+ +.++.++++....+..++.... . .
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~ 105 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV 105 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 44555565555532 235689999999999999999999887 7888888876544443333210 0 0
Q ss_pred -ecCeEEEe--ccHHHHHhhc---CcEEEEeCCCCCC----ccHHHHHHHhhc
Q psy4122 93 -VNGTAIYY--DQSAVRAAIE---GRVLILEGIEKAE----RNVLPVLNNLLE 135 (162)
Q Consensus 93 -~~G~~~~~--~gpl~~A~~~---G~vlllDEId~a~----~~v~~~L~~lle 135 (162)
..|.. .. ...+..++.. ..+|+|||++.+. .+.+..|...++
T Consensus 106 ~~~~~~-~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~ 157 (386)
T 2qby_A 106 PFTGLS-IAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS 157 (386)
T ss_dssp CSSSCC-HHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH
T ss_pred CCCCCC-HHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchh
Confidence 01100 00 0012223332 3589999998864 677777877774
No 77
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.3e-09 Score=95.01 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=46.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEK 121 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~ 121 (162)
..+.+||+||||||||++|+++|..+|.++..++++.-.+ ..+|. +..-....+..|-. ...++++||+|.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~--~~~Ge------~e~~ir~lF~~A~~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH--KYLGE------GPRMVRDVFRLARENAPSIIFIDEVDS 276 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC--SSCSH------HHHHHHHHHHHHHHTCSEEEEEECTHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc--cccch------hHHHHHHHHHHHHHcCCCeeechhhhh
Confidence 3445999999999999999999999999998887753211 11210 00000112233332 347899999975
No 78
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.6e-09 Score=95.34 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=48.3
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIE 120 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId 120 (162)
...+.+||+||||||||++|+++|..++.++..++++ +|+..+ .+.+..-....+..|-. ...+|++||||
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s------~L~sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiD 312 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS------ELVQKY--VGEGARMVRELFEMARTKKACIIFFDEID 312 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG------GGCCCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCT
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH------Hhhccc--CCHHHHHHHHHHHHHHhcCCceEeecccc
Confidence 3456799999999999999999999999998888765 333210 00000000012233332 35799999998
Q ss_pred CCC
Q psy4122 121 KAE 123 (162)
Q Consensus 121 ~a~ 123 (162)
.+.
T Consensus 313 ai~ 315 (467)
T 4b4t_H 313 AVG 315 (467)
T ss_dssp TTS
T ss_pred ccc
Confidence 754
No 79
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.82 E-value=3.4e-09 Score=91.94 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHh----cCCCCcEEEEcCCCchHHHHHHHHHHHhC--CceEEEEeccCCChhhhcceeEeecCeEEEec
Q psy4122 28 QDWLSHLRWILQK----DNMSQDVFLIGKPGSLRRSLAMSYLELTQ--REVEYICLSRDTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 28 ~~~~~~L~~i~~~----~~~g~~vlL~GppG~GKT~La~~lA~~lg--~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
....+.++.++.. ...++++||+||||||||++|+.+|..++ .++..+++.... +...|. .+. ..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~--~~~~~~----~~~---~~ 113 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY--STEIKK----TEV---LM 113 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC--CSSSCH----HHH---HH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH--HHhhhh----hHH---HH
Confidence 4455544444433 23446899999999999999999999999 666655554221 111110 000 01
Q ss_pred cHHHHH----hhcCcEEEEeCCCCCCc
Q psy4122 102 QSAVRA----AIEGRVLILEGIEKAER 124 (162)
Q Consensus 102 gpl~~A----~~~G~vlllDEId~a~~ 124 (162)
..+.+| ..++.+|++||||.+.+
T Consensus 114 ~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 114 ENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp HHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHhhhhcCCcEEEEechhhccc
Confidence 122222 23457999999987654
No 80
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=1.3e-08 Score=84.55 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC------CceEEEEecc-CCChhhhcceeEeecCeEEEec
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ------REVEYICLSR-DTTEADIKQRREIVNGTAIYYD 101 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg------~p~~~v~~~~-~~~~~dL~g~~~~~~G~~~~~~ 101 (162)
...+.|+..++... ..++||+||||+|||++|+.+|+..+ ..+..++... +...+++.
T Consensus 4 ~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir-------------- 68 (305)
T 2gno_A 4 DQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIR-------------- 68 (305)
T ss_dssp CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHH--------------
T ss_pred HHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHH--------------
Confidence 45677888877655 44789999999999999999998531 2222222211 22222222
Q ss_pred cHHHHHh------hcCcEEEEeCCCCCCccHHHHHHHhhcC
Q psy4122 102 QSAVRAA------IEGRVLILEGIEKAERNVLPVLNNLLEN 136 (162)
Q Consensus 102 gpl~~A~------~~G~vlllDEId~a~~~v~~~L~~lle~ 136 (162)
.+.+.+ ....+++|||+++++.+.+++|+..||+
T Consensus 69 -~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe 108 (305)
T 2gno_A 69 -TIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE 108 (305)
T ss_dssp -HHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS
T ss_pred -HHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC
Confidence 111111 1236999999999999999999999997
No 81
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.79 E-value=4.4e-09 Score=91.75 Aligned_cols=97 Identities=14% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCeE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGTA 97 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~~ 97 (162)
...++.+..++... ...|+||+||||||||++|+.+|..+ +.++..+++. .... |.+
T Consensus 186 ~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~-------g~~ 252 (468)
T 3pxg_A 186 SKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYR-------GEF 252 (468)
T ss_dssp HHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------
T ss_pred HHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----cccc-------chH
Confidence 55566666666553 33489999999999999999999886 4444444433 1111 111
Q ss_pred EEeccHHHHHhh--cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 98 IYYDQSAVRAAI--EGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 98 ~~~~gpl~~A~~--~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.-.-..+...+. .+.+|+|| ...+.++.|.+.|+++.+.+
T Consensus 253 e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g~v~v 294 (468)
T 3pxg_A 253 EDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGELQC 294 (468)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSSCEE
T ss_pred HHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCCCEEE
Confidence 101112333333 35789999 56778888999999886544
No 82
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.78 E-value=3e-08 Score=86.79 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
.++++|+||||||||++|+.+|..++.++..+.++
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~ 84 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecch
Confidence 46899999999999999999999999999888764
No 83
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.77 E-value=3.6e-09 Score=96.55 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC---Cc-----eEEEEeccCCChhhhcceeEeecCeEEE
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ---RE-----VEYICLSRDTTEADIKQRREIVNGTAIY 99 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg---~p-----~~~v~~~~~~~~~dL~g~~~~~~G~~~~ 99 (162)
...++.+..++... .+.+++|+||||||||++|+.+|..+. .| ...+.++ ..++.... ...|.+..
T Consensus 192 ~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~----~~~l~~~~-~~~g~~e~ 265 (758)
T 1r6b_X 192 EKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD----IGSLLAGT-KYRGDFEK 265 (758)
T ss_dssp HHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC----CC---CCC-CCSSCHHH
T ss_pred HHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc----HHHHhccc-cccchHHH
Confidence 34455555555433 445899999999999999999998762 11 1112221 11121100 00111110
Q ss_pred eccHHHHHhhc--CcEEEEeCCCCC---------CccHHHHHHHhhcCCeEE
Q psy4122 100 YDQSAVRAAIE--GRVLILEGIEKA---------ERNVLPVLNNLLENREMH 140 (162)
Q Consensus 100 ~~gpl~~A~~~--G~vlllDEId~a---------~~~v~~~L~~lle~r~l~ 140 (162)
.-..+...+.. +.+|+|||++.+ ..++.+.|.++++++.+.
T Consensus 266 ~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~ 317 (758)
T 1r6b_X 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIR 317 (758)
T ss_dssp HHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCE
T ss_pred HHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeE
Confidence 00112223322 579999999987 334567788888876553
No 84
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.72 E-value=4.7e-09 Score=97.75 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=48.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeE-EEeccHHHHHhhc-CcEEEEeCCCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTA-IYYDQSAVRAAIE-GRVLILEGIEK 121 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~-~~~~gpl~~A~~~-G~vlllDEId~ 121 (162)
.+.+||+||||||||+||+++|..+|.++..+++. ++++.+ .|.. .-....+..|.++ +.+|+|||||.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~------~l~sk~---~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLINGP------EIMSKL---AGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHH------HHHSSC---TTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhH------Hhhccc---chHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 35699999999999999999999999998877764 333210 0100 0000123344333 57999999998
Q ss_pred CCc
Q psy4122 122 AER 124 (162)
Q Consensus 122 a~~ 124 (162)
+.+
T Consensus 309 l~~ 311 (806)
T 3cf2_A 309 IAP 311 (806)
T ss_dssp TCC
T ss_pred ccc
Confidence 654
No 85
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.66 E-value=1.8e-08 Score=92.27 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----------CCceEEEEeccCCChhhhcceeEeecCe
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----------QREVEYICLSRDTTEADIKQRREIVNGT 96 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----------g~p~~~v~~~~~~~~~dL~g~~~~~~G~ 96 (162)
-...++.+..++... ...|+||+||||||||++|+.+|..+ +.++..+++ .... .|.
T Consensus 185 ~~~~i~~l~~~l~~~-~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~-------~G~ 251 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKY-------RGE 251 (758)
T ss_dssp CHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------
T ss_pred chHHHHHHHHHHhCC-CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccc-------cch
Confidence 355666666666543 34489999999999999999999986 444433333 0001 122
Q ss_pred EEEeccHHHHHhh--cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 97 AIYYDQSAVRAAI--EGRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 97 ~~~~~gpl~~A~~--~G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
+...-..+...+. .+.+|+|| ...+.++.|.+.++++.+.+
T Consensus 252 ~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~~v~~ 294 (758)
T 3pxi_A 252 FEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGELQC 294 (758)
T ss_dssp -CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSSCEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcCCEEE
Confidence 2111122333332 35799999 66778889999999877654
No 86
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.63 E-value=2.6e-07 Score=81.76 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHhc-----------CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 27 TQDWLSHLRWILQKD-----------NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~-----------~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
.......++.+...+ ...+.++|+||||||||+|++.+|...+.++..+++.
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~ 98 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 98 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 356666666665432 1234699999999999999999999999888777764
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.63 E-value=4.3e-08 Score=90.98 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=55.3
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEE-eccHHHHHhh-cCcEEEEeC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIY-YDQSAVRAAI-EGRVLILEG 118 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~-~~gpl~~A~~-~G~vlllDE 118 (162)
...+++++|+||||||||++|+.+|..++.++..+++. ++.+.. .|...- ....+..+.. ...++++||
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~------~l~~~~---~g~~~~~l~~vf~~a~~~~p~il~iDE 305 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGP------EIMSKL---AGESESNLRKAFEEAEKNAPAIIFIDE 305 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHH------HHSSSS---TTHHHHHHHHHHHHHHHHCSEEEEEES
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEch------Hhhhhh---hhhHHHHHHHHHHHHHhcCCcEEEecc
Confidence 34567899999999999999999999999988777664 232210 010000 0011222322 347999999
Q ss_pred CCCCCc-----------cHHHHHHHhhc
Q psy4122 119 IEKAER-----------NVLPVLNNLLE 135 (162)
Q Consensus 119 Id~a~~-----------~v~~~L~~lle 135 (162)
|+.+.+ .+++.|..+++
T Consensus 306 id~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 306 LDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp GGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccchHHHHHHHHHHHHhh
Confidence 977654 25667777776
No 88
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.60 E-value=2e-07 Score=75.86 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=29.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
..+.++|+||||||||+|++.+|...+.++..+..
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g 77 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKG 77 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEET
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEc
Confidence 34459999999999999999999999887655554
No 89
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.59 E-value=3.5e-08 Score=78.79 Aligned_cols=92 Identities=14% Similarity=0.292 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHh
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAA 108 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~ 108 (162)
..++.|+.++...-....++++||||||||++|..+|..++..+ +.+. .. .+ ..| ...+
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i--~~fa-ns-~s------------~f~-----l~~l 101 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV--ISFV-NS-TS------------HFW-----LEPL 101 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE--CCCC-CS-SS------------CGG-----GGGG
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe--eeEE-ec-cc------------hhh-----hccc
Confidence 44777788777532333599999999999999999999875432 1110 00 00 001 1122
Q ss_pred hcCcEEEEeCCCCCCccH-HHHHHHhhcCCeEEE
Q psy4122 109 IEGRVLILEGIEKAERNV-LPVLNNLLENREMHL 141 (162)
Q Consensus 109 ~~G~vlllDEId~a~~~v-~~~L~~lle~r~l~l 141 (162)
....+++|||++.+..+. ...+..++|.+.+.+
T Consensus 102 ~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~i 135 (212)
T 1tue_A 102 TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISI 135 (212)
T ss_dssp TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEE
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccH
Confidence 345699999998654333 346788888876555
No 90
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.57 E-value=1.5e-07 Score=72.56 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChh--hhcceeEeecCe----EEEec-cHHHHHhh-cCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEA--DIKQRREIVNGT----AIYYD-QSAVRAAI-EGR 112 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~--dL~g~~~~~~G~----~~~~~-gpl~~A~~-~G~ 112 (162)
|+-.+++||+|+|||+++..++.. .|.++..++...|.... .+.. ..|. ....+ ..+.+.+. ...
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s----~~g~~~~~~~~~~~~~~~~~~~~~~d 78 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVS----HSGNGVEAHVIERPEEMRKYIEEDTR 78 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC--------CEECEEESSGGGGGGGCCTTEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEe----cCCCceeeEEECCHHHHHHHhcCCCC
Confidence 556789999999999999777754 36666666555443211 1110 1110 00010 11222222 346
Q ss_pred EEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 113 VLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 113 vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
+|+|||+..++++++..|..+.+.+.-.+-
T Consensus 79 vviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~ 108 (184)
T 2orw_A 79 GVFIDEVQFFNPSLFEVVKDLLDRGIDVFC 108 (184)
T ss_dssp EEEECCGGGSCTTHHHHHHHHHHTTCEEEE
T ss_pred EEEEECcccCCHHHHHHHHHHHHCCCCEEE
Confidence 999999999999999999999887654443
No 91
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=1.4e-07 Score=77.64 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHH-HhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 27 TQDWLSHLRWIL-QKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 27 ~~~~~~~L~~i~-~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.+...+.|+..+ ..... .+++|+||+|+|||++++.+|..+
T Consensus 19 ~~~~~~~l~~~~~~~~~~-~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDL-PHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CHHHHHHHHTTTTCTTCC-CCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHhhCCCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456666666665 33223 359999999999999999999954
No 92
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.55 E-value=3.6e-08 Score=91.81 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=45.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh-cCcEEEEeCCCCCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI-EGRVLILEGIEKAE 123 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~-~G~vlllDEId~a~ 123 (162)
+.+||+||||||||.+|+++|...+.++..+. .++|+..+. +.+..-...-+..|-+ ...||+|||||.+-
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~------~~~l~s~~v--Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~ 583 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIK------GPELLTMWF--GESEANVREIFDKARQAAPCVLFFDELDSIA 583 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECC------HHHHHTTTC--SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEec------cchhhcccc--chHHHHHHHHHHHHHHcCCceeechhhhHHh
Confidence 46999999999999999999999999876443 345543210 1000000112233322 35799999999753
No 93
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.48 E-value=3.7e-07 Score=74.06 Aligned_cols=46 Identities=17% Similarity=0.074 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
+.-++.|...+.. +..++++||+|+|||+|++++++..+ ..++++.
T Consensus 18 ~~el~~L~~~l~~---~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 18 EEESRKLEESLEN---YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp HHHHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred HHHHHHHHHHHhc---CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 4456666666654 46899999999999999999998875 5567765
No 94
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.47 E-value=1.5e-08 Score=93.95 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=31.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
.+++++|+||||||||++|+++|..++.++..+++.
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~ 545 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCS
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEech
Confidence 456799999999999999999999999987766654
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.46 E-value=1.9e-07 Score=77.85 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=52.8
Q ss_pred CCcEEE--EcCCCchHHHHHHHHHHHh---------CCceEEEEeccCCChhhhccee------Eee-cCeEEEec--cH
Q psy4122 44 SQDVFL--IGKPGSLRRSLAMSYLELT---------QREVEYICLSRDTTEADIKQRR------EIV-NGTAIYYD--QS 103 (162)
Q Consensus 44 g~~vlL--~GppG~GKT~La~~lA~~l---------g~p~~~v~~~~~~~~~dL~g~~------~~~-~G~~~~~~--gp 103 (162)
+.+++| +||+|+|||++++.+++.+ +.++.+++|....+..++.... ... .|.. ..+ ..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~ 128 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAP-ALDILKA 128 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCC-HHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC-HHHHHHH
Confidence 447888 9999999999999999766 4455667765555555543210 000 1110 000 01
Q ss_pred HHHHhh---cCcEEEEeCCCCCCc------cHHHHHHHhhc
Q psy4122 104 AVRAAI---EGRVLILEGIEKAER------NVLPVLNNLLE 135 (162)
Q Consensus 104 l~~A~~---~G~vlllDEId~a~~------~v~~~L~~lle 135 (162)
+...+. ...+|+|||++.+.. +++..|...++
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHE 169 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHH
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHH
Confidence 122222 234789999988643 56665556554
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.45 E-value=8.9e-07 Score=71.82 Aligned_cols=35 Identities=11% Similarity=0.093 Sum_probs=30.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEecc
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSR 79 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~ 79 (162)
..++++||+|+|||+|++++++..+.+..++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 58999999999999999999998877777777763
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.33 E-value=1.7e-06 Score=74.85 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCC-cEEEEcCCCchHHHHHHHHHHHh---CC-ceEEEEeccC-------------CChhhh
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQ-DVFLIGKPGSLRRSLAMSYLELT---QR-EVEYICLSRD-------------TTEADI 86 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~-~vlL~GppG~GKT~La~~lA~~l---g~-p~~~v~~~~~-------------~~~~dL 86 (162)
.+++.=.+.+..++..+..++ ++++.|+||||||+++.++++.+ +. .+..+..+.. .|...+
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~ 104 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSI 104 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHH
Confidence 367777777777665544344 89999999999999999988655 33 2222222110 011112
Q ss_pred cceeE-eecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcC-CeEEE
Q psy4122 87 KQRRE-IVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLEN-REMHL 141 (162)
Q Consensus 87 ~g~~~-~~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~-r~l~l 141 (162)
.+... ..+....|... .........++++||+...++..+..|...+.. ..+.+
T Consensus 105 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 105 LKINPVTYEENVLFEQK-EVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp HTEEEEECSSCEEEEEC-SCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEE
T ss_pred hccCcccccccchhccc-ccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEE
Confidence 22111 11122223211 011234568999999999999999999998873 44544
No 98
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.29 E-value=9.5e-07 Score=74.72 Aligned_cols=75 Identities=16% Similarity=0.196 Sum_probs=45.6
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec--cCCChhhhcceeEeecCeEEEeccHHHHHhhcCcEEEEeC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS--RDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEG 118 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~--~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~~G~vlllDE 118 (162)
+..+..++|+||||||||+||.++|...|.++.++.+. +..+. . . .+..... .-+.+++.+..+|+|||
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~---~---~-~~le~~l--~~i~~~l~~~~LLVIDs 190 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG---Y---N-TDFNVFV--DDIARAMLQHRVIVIDS 190 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTT---C---B-CCHHHHH--HHHHHHHHHCSEEEEEC
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhh---h---h-cCHHHHH--HHHHHHHhhCCEEEEec
Confidence 33455679999999999999999998777777777772 21111 0 0 0000000 01233444444999999
Q ss_pred CCCCCc
Q psy4122 119 IEKAER 124 (162)
Q Consensus 119 Id~a~~ 124 (162)
|+...+
T Consensus 191 I~aL~~ 196 (331)
T 2vhj_A 191 LKNVIG 196 (331)
T ss_dssp CTTTC-
T ss_pred cccccc
Confidence 987643
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.25 E-value=4.8e-06 Score=66.47 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=57.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCC-hhhhcceeEeecCeEEEe-ccHHHHHhhc------C
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTT-EADIKQRREIVNGTAIYY-DQSAVRAAIE------G 111 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~-~~dL~g~~~~~~G~~~~~-~gpl~~A~~~------G 111 (162)
.|.-++++||+|+|||+++.+++... |..+..++...+.. ...+..+..+.-....+. ...+...+++ -
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 45567889999999999999888554 66777776654432 111211111110111111 1123333333 4
Q ss_pred cEEEEeCCCCCCccHHHHHHHhhcCC
Q psy4122 112 RVLILEGIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 112 ~vlllDEId~a~~~v~~~L~~lle~r 137 (162)
.+|+|||+.-++.+++..|..+.+.+
T Consensus 91 dvViIDEaQ~l~~~~ve~l~~L~~~g 116 (223)
T 2b8t_A 91 KVIGIDEVQFFDDRICEVANILAENG 116 (223)
T ss_dssp CEEEECSGGGSCTHHHHHHHHHHHTT
T ss_pred CEEEEecCccCcHHHHHHHHHHHhCC
Confidence 69999999999999888888877654
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=9.7e-06 Score=62.01 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=23.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.+.|+||+|||||||++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999999988643
No 101
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.19 E-value=2.3e-06 Score=67.66 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
.+.++|+||||||||+|++.+|...+.++..+.+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~ 82 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASG 82 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeH
Confidence 3459999999999999999999999877665554
No 102
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=1.5e-06 Score=66.69 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++.++|+|++||||||+++.+|+.+|.++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i 54 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFI 54 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 4678999999999999999999999998854
No 103
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.15 E-value=2.2e-06 Score=63.82 Aligned_cols=33 Identities=6% Similarity=0.030 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVEYIC 76 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~ 76 (162)
++.++|+|+||+||||+++.+|+.++.++..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~ 35 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG 35 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence 457899999999999999999999998765443
No 104
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.15 E-value=1.6e-06 Score=65.05 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
++.++|+|+|||||||+++.+|+.+|.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 457999999999999999999999998854
No 105
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.15 E-value=5.1e-06 Score=66.78 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhc-----------CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 28 QDWLSHLRWILQKD-----------NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 28 ~~~~~~L~~i~~~~-----------~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
+.....++.+...+ ...+.++|+||||||||+|++.+|...+.++..+.+
T Consensus 46 ~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~ 106 (278)
T 1iy2_A 46 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASG 106 (278)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecH
Confidence 55666666555432 223459999999999999999999999877666554
No 106
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.12 E-value=9.1e-06 Score=68.88 Aligned_cols=104 Identities=11% Similarity=0.150 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--eEEEEeccCCCh--hh---hcceeEeecCeEEEeccHHH
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--VEYICLSRDTTE--AD---IKQRREIVNGTAIYYDQSAV 105 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--~~~v~~~~~~~~--~d---L~g~~~~~~G~~~~~~gpl~ 105 (162)
.+++++. ..+..++++||+||||||+.+.++..++.. -..+......+. .. ++.+.........|. ..+.
T Consensus 114 ~l~~l~~--~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~-~~La 190 (356)
T 3jvv_A 114 VFKRVSD--VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFS-EALR 190 (356)
T ss_dssp HHHHHHH--CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHH-HHHH
T ss_pred HHHHHHh--CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHH-HHHH
Confidence 3444432 334589999999999999999998876533 223333211111 00 010111111111222 1466
Q ss_pred HHhhc-CcEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 106 RAAIE-GRVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 106 ~A~~~-G~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.|++. ..++++||+- .++....+..+.+.|...+
T Consensus 191 ~aL~~~PdvillDEp~--d~e~~~~~~~~~~~G~~vl 225 (356)
T 3jvv_A 191 SALREDPDIILVGEMR--DLETIRLALTAAETGHLVF 225 (356)
T ss_dssp HHTTSCCSEEEESCCC--SHHHHHHHHHHHHTTCEEE
T ss_pred HHhhhCcCEEecCCCC--CHHHHHHHHHHHhcCCEEE
Confidence 77765 4799999997 5677777777777776544
No 107
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.09 E-value=2.7e-06 Score=63.01 Aligned_cols=28 Identities=18% Similarity=0.405 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
++.+.|+||+||||||+++.+|..++.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~ 31 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME 31 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999999999999875
No 108
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.08 E-value=2.6e-06 Score=63.18 Aligned_cols=29 Identities=38% Similarity=0.259 Sum_probs=26.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
++++|+|++||||||+++.+|+.+|.|+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 48999999999999999999999999864
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.05 E-value=3.5e-06 Score=61.93 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=25.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|+|++||||||+++.+++.+|.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i 30 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPII 30 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence 5889999999999999999999998753
No 110
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.05 E-value=8.3e-06 Score=68.19 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccC--CChhhhcceeEee--cCeEEEeccHHHHHhh-cCcEEEE
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRD--TTEADIKQRREIV--NGTAIYYDQSAVRAAI-EGRVLIL 116 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~--~~~~dL~g~~~~~--~G~~~~~~gpl~~A~~-~G~vlll 116 (162)
..|+.++++||+|+||||+.+.++......--.+.+... ...........+. +|.. ..-.+..|++ +..++++
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~--~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNIT--SADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBC--HHHHHHHHTTSCCSEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChh--HHHHHHHHhhhCCCEEEE
Confidence 357899999999999999999999887644344544421 1111111111122 2221 1124566765 4579999
Q ss_pred eCCCCCCccHHHHHHHhhc
Q psy4122 117 EGIEKAERNVLPVLNNLLE 135 (162)
Q Consensus 117 DEId~a~~~v~~~L~~lle 135 (162)
||... .++.+.|..+-.
T Consensus 247 dE~~~--~e~~~~l~~~~~ 263 (330)
T 2pt7_A 247 GELRS--SEAYDFYNVLCS 263 (330)
T ss_dssp CCCCS--THHHHHHHHHHT
T ss_pred cCCCh--HHHHHHHHHHhc
Confidence 99975 567777666544
No 111
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.05 E-value=9.4e-06 Score=62.84 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|+.+.|+||+||||||+++.++..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 4578999999999999999999876
No 112
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.01 E-value=2.2e-05 Score=62.25 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCC---hhhhc--ce--eEeecC--
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTT---EADIK--QR--REIVNG-- 95 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~---~~dL~--g~--~~~~~G-- 95 (162)
.+.+.=.+.+..++. ++++++.||+|+|||.++..++...+.+..++.-....- ...+. +. ...-.|
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~ 168 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRI 168 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSC
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 345555555555443 457999999999999999998888876655543321100 01111 10 111111
Q ss_pred ----e-EEEeccHHHHHh----hcCcEEEEeCCCCCCccHHHHHHHhhcCCe
Q psy4122 96 ----T-AIYYDQSAVRAA----IEGRVLILEGIEKAERNVLPVLNNLLENRE 138 (162)
Q Consensus 96 ----~-~~~~~gpl~~A~----~~G~vlllDEId~a~~~v~~~L~~lle~r~ 138 (162)
. .+-..+-+.... ..-.+||+||+++++......+...+....
T Consensus 169 ~~~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~~~~~ 220 (237)
T 2fz4_A 169 KELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPF 220 (237)
T ss_dssp BCCCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHTCCCSE
T ss_pred CCcCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHHHHHhccCCE
Confidence 1 111112222221 124799999999999887776666665443
No 113
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.01 E-value=4e-06 Score=62.61 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=25.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|.|+|||||||+++.+|+.+|.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~ 33 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL 33 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE
Confidence 6999999999999999999999998753
No 114
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.00 E-value=4.9e-06 Score=62.40 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=26.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..++|+|+|||||||+++.+|+.+|.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLL 31 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 46899999999999999999999998853
No 115
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.99 E-value=2.3e-05 Score=64.41 Aligned_cols=89 Identities=10% Similarity=0.085 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCC-CCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHHhh
Q psy4122 31 LSHLRWILQKDNM-SQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAI 109 (162)
Q Consensus 31 ~~~L~~i~~~~~~-g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A~~ 109 (162)
...++.+++.... ...++|+||||||||.+|+++|...+.- -.++.+ + + .+ ++. .+.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~-G~vn~~-~---~-----------~f-----~l~-~~~ 147 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWT-N---E-----------NF-----PFN-DCV 147 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTT-C---S-----------SC-----TTG-GGS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc-ceeecc-c---c-----------cc-----ccc-ccc
Confidence 3335555544322 2259999999999999999999876431 111111 0 0 00 111 123
Q ss_pred cCcEEEEeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 110 EGRVLILEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 110 ~G~vlllDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
...+++.||.... .+....+..+++...+.+.
T Consensus 148 ~k~i~l~Ee~~~~-~d~~~~lr~i~~G~~~~id 179 (267)
T 1u0j_A 148 DKMVIWWEEGKMT-AKVVESAKAILGGSKVRVD 179 (267)
T ss_dssp SCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC-
T ss_pred ccEEEEeccccch-hHHHHHHHHHhCCCcEEEe
Confidence 4456666666543 4566677888875555553
No 116
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.97 E-value=6.2e-06 Score=61.74 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
++.++|+|+|||||||+++.+|+.+|.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 56799999999999999999999998764
No 117
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.95 E-value=3e-05 Score=60.32 Aligned_cols=96 Identities=7% Similarity=0.097 Sum_probs=56.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhh--hcceeEeecCeEEEe-ccHHHHHhhc-CcEEE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEAD--IKQRREIVNGTAIYY-DQSAVRAAIE-GRVLI 115 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~d--L~g~~~~~~G~~~~~-~gpl~~A~~~-G~vll 115 (162)
.|+-.+++||.|+|||+.+..++... |..+..++...|+...+ +..+..+.-....+. ...+...+.. -.+|+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dvVi 86 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEVIA 86 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCEEE
Confidence 35567889999999999998888654 77777776554443221 111100000001111 1123333332 37999
Q ss_pred EeCCCCCCccHHHHHHHhhcCCe
Q psy4122 116 LEGIEKAERNVLPVLNNLLENRE 138 (162)
Q Consensus 116 lDEId~a~~~v~~~L~~lle~r~ 138 (162)
|||+..++++.++.|..+.+.+.
T Consensus 87 IDEaqfl~~~~v~~l~~l~~~~~ 109 (191)
T 1xx6_A 87 IDEVQFFDDEIVEIVNKIAESGR 109 (191)
T ss_dssp ECSGGGSCTHHHHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 99999999999998888777643
No 118
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.93 E-value=6.7e-06 Score=61.64 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..++|+|+|||||||+++.+++.+|.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 33 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPL 33 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 44689999999999999999999998764
No 119
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.93 E-value=4.7e-06 Score=62.38 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
|..++|+|+|||||||+++.+|+.+|.++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~ 32 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKK 32 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45789999999999999999999998764
No 120
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.92 E-value=7.6e-06 Score=60.42 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=26.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+.++|+|+|||||||+++.+|+.+|.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i 31 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46899999999999999999999998743
No 121
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.92 E-value=1.5e-05 Score=71.45 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhcc------eeEe---
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIKQ------RREI--- 92 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~g------~~~~--- 92 (162)
.+++.=.+.++.++. +..+++.|+||||||+++..++..+ |.++..+..+ -...+.+. ..++
T Consensus 189 ~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT--~~Aa~~L~e~~~~~a~Tih~l 262 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT--GKAARRLGEVTGRTASTVHRL 262 (574)
T ss_dssp TCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS--HHHHHHHHHHHTSCEEEHHHH
T ss_pred CCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc--HHHHHHhHhhhcccHHHHHHH
Confidence 356655555555543 5689999999999999999888644 5554433222 11222111 0010
Q ss_pred --ecCeEEEeccHHHHHhhcCcEEEEeCCCCCCccHHHHHHHhhcCC-eEEE
Q psy4122 93 --VNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENR-EMHL 141 (162)
Q Consensus 93 --~~G~~~~~~gpl~~A~~~G~vlllDEId~a~~~v~~~L~~lle~r-~l~l 141 (162)
..++ .|.... .......+||+||+..++...+..|...+..+ .+.+
T Consensus 263 l~~~~~-~~~~~~--~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lil 311 (574)
T 3e1s_A 263 LGYGPQ-GFRHNH--LEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLL 311 (574)
T ss_dssp TTEETT-EESCSS--SSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEE
T ss_pred HcCCcc-hhhhhh--cccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEE
Confidence 0010 121110 01124579999999999999888888877643 4555
No 122
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.91 E-value=4.5e-06 Score=62.89 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..+.|+|+|||||||+++.+|+.+|.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~ 40 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH 40 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45799999999999999999999998653
No 123
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.91 E-value=6.2e-06 Score=62.48 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHH-hCCceE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLEL-TQREVE 73 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~-lg~p~~ 73 (162)
.+..++|+|+|||||||+++.+|+. +|.++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i 40 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHL 40 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence 3567999999999999999999998 786643
No 124
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.90 E-value=1.9e-05 Score=60.62 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=24.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.++.++|+||+|+||||+++.+++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 477899999999999999999998874
No 125
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.89 E-value=6.6e-06 Score=61.22 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.++.++|+|++|+||||+++.++..+|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~ 35 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAA 35 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcE
Confidence 35679999999999999999999998865
No 126
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.89 E-value=8.9e-06 Score=61.11 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..++|+|+|||||||+++.+|+.+|.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~ 37 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTH 37 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45799999999999999999999999764
No 127
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.88 E-value=1.1e-05 Score=61.58 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..++|+|+|||||||+++.+++.+|.++
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~ 48 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQ 48 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 34589999999999999999999999874
No 128
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.88 E-value=7.2e-06 Score=61.19 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+..++|+|+|||||||+++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999887
No 129
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.88 E-value=8.6e-06 Score=59.31 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|+|+|||||||+++.+ +.+|.++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 5789999999999999999 88888743
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.87 E-value=7.1e-06 Score=61.64 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=26.7
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
...|+.+.|+||+||||||+++.++...+.+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~ 37 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPK 37 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCe
Confidence 34577899999999999999999998766553
No 131
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.87 E-value=1.1e-05 Score=65.13 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=33.1
Q ss_pred HHHHHHHhcCC---CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 33 HLRWILQKDNM---SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 33 ~L~~i~~~~~~---g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.|+.+...... |+.+.|+|++||||||+++.+|..+|.++.
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~ 77 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFF 77 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 34444444444 889999999999999999999999998754
No 132
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.86 E-value=2.4e-05 Score=59.60 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=40.6
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhh
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADI 86 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL 86 (162)
..|-.++. .+..|.-++|.||||+|||+++.++|...+.++.++......+...+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHH
Confidence 34555664 45577789999999999999999999866777777776543344433
No 133
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.86 E-value=7.2e-06 Score=61.08 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+..++|+|+|||||||+++.+++.+|.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346899999999999999999999998754
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.85 E-value=1.1e-05 Score=61.71 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=26.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.|+.+.|+||+||||||+++.++..+|..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~ 56 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE 56 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe
Confidence 46789999999999999999999999864
No 135
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.85 E-value=9.5e-06 Score=60.57 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
..++|+|+|||||||+++.+++.+|.++
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~ 31 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTH 31 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4689999999999999999999999764
No 136
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.84 E-value=1.1e-05 Score=62.34 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..++|+|+|||||||+++.+|+.++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 32 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAH 32 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceE
Confidence 45789999999999999999999999764
No 137
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.84 E-value=6.1e-05 Score=60.92 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+.+. ...|+.++++||+||||||+.+.++....
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 344443 45677899999999999999999998764
No 138
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.81 E-value=1.5e-05 Score=58.70 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=25.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|+|++||||||+++.+++.+|.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999998753
No 139
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.81 E-value=1.5e-05 Score=60.79 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=25.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
..++|+|++|+||||+++.+++.+|.++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~ 46 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPF 46 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEE
Confidence 4699999999999999999999998763
No 140
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.80 E-value=1.5e-05 Score=61.68 Aligned_cols=28 Identities=18% Similarity=0.109 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
+..++|+|+|||||||+++.+|+.++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4579999999999999999999999965
No 141
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.80 E-value=1.5e-05 Score=61.19 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=25.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|+|+|||||||+++.+|+.+|.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence 4789999999999999999999987743
No 142
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.80 E-value=1.4e-05 Score=61.52 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=25.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.++|+|||||||||+++.+|+.+|.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i 29 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHI 29 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4889999999999999999999987643
No 143
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.79 E-value=1.5e-05 Score=59.45 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=25.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
..++|+|+|||||||+++.+++.+|.++
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 34 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVH 34 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4689999999999999999999998764
No 144
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.79 E-value=3e-05 Score=61.57 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.+..++|.||||+||||+++.+++.+|.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~ 57 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCH 57 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 344689999999999999999999998764
No 145
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.78 E-value=2.4e-05 Score=66.43 Aligned_cols=97 Identities=11% Similarity=0.170 Sum_probs=51.3
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhCCc--eEEEEeccCCChhhhcceeE-eec-----CeEEEeccHHHHHhhcC-
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQRE--VEYICLSRDTTEADIKQRRE-IVN-----GTAIYYDQSAVRAAIEG- 111 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg~p--~~~v~~~~~~~~~dL~g~~~-~~~-----G~~~~~~gpl~~A~~~G- 111 (162)
...|+.++++||+|+||||+++.++...... -..+......+. .+..... +.. ....| ...+..+++.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~-~~~~~~~~v~Q~~~g~~~~~~-~~~l~~~L~~~p 210 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-VFKHKKSIVNQREVGEDTKSF-ADALRAALREDP 210 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS-CCCCSSSEEEEEEBTTTBSCS-HHHHHHHTTSCC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh-hhccCceEEEeeecCCCHHHH-HHHHHHHhhhCc
Confidence 3456789999999999999999999876432 122222211111 0110000 000 11122 23455666554
Q ss_pred cEEEEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 112 RVLILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 112 ~vlllDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
.++++||+- .++....+......+...+
T Consensus 211 d~illdE~~--d~e~~~~~l~~~~~g~~vi 238 (372)
T 2ewv_A 211 DVIFVGEMR--DLETVETALRAAETGHLVF 238 (372)
T ss_dssp SEEEESCCC--SHHHHHHHHHHHTTTCEEE
T ss_pred CEEEECCCC--CHHHHHHHHHHHhcCCEEE
Confidence 699999996 3443333333345555444
No 146
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.78 E-value=1.6e-05 Score=61.64 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
+..++|+|+|||||||+++.+|+.+|.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i 34 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHL 34 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEE
Confidence 357899999999999999999999997643
No 147
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.78 E-value=1.1e-05 Score=59.57 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.7
Q ss_pred cEEEEcCCCchHHHHHHHHHH-HhCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE-LTQR 70 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~-~lg~ 70 (162)
.++|.|+||+||||+++.+++ .+|.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 588999999999999999998 4553
No 148
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.76 E-value=1.7e-05 Score=61.81 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..++|+|+|||||||+++.+|+.+|.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 35 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKH 35 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 35699999999999999999999998764
No 149
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.76 E-value=2e-05 Score=61.73 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..++|+|+|||||||+++.+|+.++.++
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~ 44 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCH 44 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 35799999999999999999999999764
No 150
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.75 E-value=1.9e-05 Score=59.41 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=24.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.+.|+|++||||||+++.+|+.++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 478999999999999999999999754
No 151
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.75 E-value=2e-05 Score=60.72 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=25.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..+.|+||+||||||+++.+++.+|.++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999987643
No 152
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.74 E-value=2e-05 Score=63.06 Aligned_cols=27 Identities=19% Similarity=0.134 Sum_probs=24.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.++|.|||||||||+++.+|+.++.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~ 29 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPV 29 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeE
Confidence 478999999999999999999998764
No 153
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.74 E-value=2.6e-05 Score=58.34 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYI 75 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v 75 (162)
.|..+.|+|++||||||+++.++..+ |.|+..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 35678999999999999999999987 8886544
No 154
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.73 E-value=2.9e-05 Score=58.31 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=24.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT---QREVEYI 75 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l---g~p~~~v 75 (162)
+.|+|++||||||+++.+++.+ |.++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 7899999999999999999998 8886533
No 155
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.72 E-value=2.2e-05 Score=59.35 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh-CCceEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT-QREVEYI 75 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l-g~p~~~v 75 (162)
+..+.|+|++||||||+++.+++.+ |.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 5679999999999999999999988 5765543
No 156
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.72 E-value=2.3e-05 Score=60.51 Aligned_cols=27 Identities=19% Similarity=0.178 Sum_probs=24.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.++|+|+|||||||+++.+|+.+|.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~ 28 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQ 28 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 489999999999999999999998764
No 157
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.71 E-value=5.8e-05 Score=57.65 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..|..+.|+||+||||||+++.+|..+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999988
No 158
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.70 E-value=5.6e-05 Score=67.94 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=23.7
Q ss_pred cCcEEEEeCCCCCCccHHHHHHHhhcC-CeEEE
Q psy4122 110 EGRVLILEGIEKAERNVLPVLNNLLEN-REMHL 141 (162)
Q Consensus 110 ~G~vlllDEId~a~~~v~~~L~~lle~-r~l~l 141 (162)
+..++|+||.+.++...+..|...+.. .++.+
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liL 294 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALPDHARVIF 294 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEE
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCCCCCEEEE
Confidence 457999999999988777777776653 45555
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.70 E-value=1.6e-05 Score=59.23 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=22.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.++|+|+|||||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999876
No 160
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.69 E-value=3.5e-05 Score=57.49 Aligned_cols=29 Identities=21% Similarity=0.083 Sum_probs=25.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEY 74 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~ 74 (162)
.+.|+|++||||||+++.+++.+ |.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999999999987 887553
No 161
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.69 E-value=5.7e-05 Score=58.98 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=24.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH--------hC-CceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL--------TQ-REVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~--------lg-~p~~~v~~~ 78 (162)
-.+++|+||+|||++|..++.. .| +++.+.++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 5789999999999999886533 34 776656554
No 162
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.68 E-value=2.7e-05 Score=61.11 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.++|.||||+||+|.|+.+|+.+|.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ 28 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH 28 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 478999999999999999999999873
No 163
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.68 E-value=2.3e-05 Score=59.30 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=24.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
+..++|.|+|||||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4468999999999999999999988764
No 164
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.68 E-value=2.6e-05 Score=59.23 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=24.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.++|+|+|||||||+++.+++.+|.++
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~ 43 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVH 43 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceE
Confidence 588999999999999999999998753
No 165
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.65 E-value=3.5e-05 Score=60.16 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=24.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.++|+|+|||||||+++.+++.+|.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 28 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH 28 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 478999999999999999999998653
No 166
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.64 E-value=0.00054 Score=55.00 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=51.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCC--hhhhc-ceeEe------ecCeEEEeccHHHHHh-hcCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTT--EADIK-QRREI------VNGTAIYYDQSAVRAA-IEGR 112 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~--~~dL~-g~~~~------~~G~~~~~~gpl~~A~-~~G~ 112 (162)
++++.|+||||||+++-.+|.. .|..+..+-+.+.-. ..++. +.... ..|... .+..+-.++ +...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~-~e~~l~~~L~~~pd 86 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTL-EEMDLDALLKAAPS 86 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEE-EECCHHHHHHHCCS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCccc-ccccHHHHHhcCCC
Confidence 6999999999999999988855 377766555543212 22332 21111 112211 223333323 4568
Q ss_pred EEEEeCCCCCCc------cHHHHHHHhhcCC
Q psy4122 113 VLILEGIEKAER------NVLPVLNNLLENR 137 (162)
Q Consensus 113 vlllDEId~a~~------~v~~~L~~lle~r 137 (162)
++++||+-..+. .....+..+++.+
T Consensus 87 lvIVDElG~~~~~~~r~~~~~qDV~~~l~sg 117 (228)
T 2r8r_A 87 LVLVDELAHTNAPGSRHTKRWQDIQELLAAG 117 (228)
T ss_dssp EEEESCTTCBCCTTCSSSBHHHHHHHHHHTT
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHHHcCC
Confidence 999999965422 2344444455555
No 167
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.62 E-value=4e-05 Score=58.23 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=23.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.+.|+|++||||||+++.+|. +|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~ 28 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYV 28 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEE
Confidence 588999999999999999999 88664
No 168
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.62 E-value=4.7e-05 Score=60.02 Aligned_cols=29 Identities=14% Similarity=0.177 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+..+.|+||+||||||+++.+|+.+|...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45799999999999999999999988753
No 169
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.61 E-value=3.9e-05 Score=57.87 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+.+.|+||+|||||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999999999999999998764
No 170
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.61 E-value=3.8e-05 Score=60.92 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+-++|.||||+||+|.|+.+|+.+|.+.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~h 57 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNH 57 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCce
Confidence 4578899999999999999999999763
No 171
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.61 E-value=3.3e-05 Score=61.51 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=24.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..++|.|+|||||||+++.+++.++.+..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~ 61 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIV 61 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcE
Confidence 35899999999999999999999885443
No 172
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.60 E-value=5.2e-05 Score=57.33 Aligned_cols=28 Identities=18% Similarity=-0.046 Sum_probs=25.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+.|.|++||||||+++.+|+.+|.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 5889999999999999999999998754
No 173
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.59 E-value=4.2e-05 Score=59.78 Aligned_cols=37 Identities=16% Similarity=-0.018 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
+.|+.+--....|+.+.|+||+|||||||++.++...
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455555556678899999999999999999999877
No 174
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.59 E-value=2.6e-05 Score=59.34 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=25.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.+..+.|+|++||||||+++.+++.++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999887644
No 175
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.58 E-value=7.6e-05 Score=60.96 Aligned_cols=25 Identities=40% Similarity=0.474 Sum_probs=22.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
.++|.|||||||||+++.+++.++.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~ 59 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQG 59 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998743
No 176
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.58 E-value=3.8e-05 Score=67.26 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=57.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCChhhhccee------EeecCeEEEeccHHHHHhh----cCcEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIKQRR------EIVNGTAIYYDQSAVRAAI----EGRVLI 115 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~~~dL~g~~------~~~~G~~~~~~gpl~~A~~----~G~vll 115 (162)
-.++.|+||||||+++..++.. .+...+..+.. ...++..+- ........-.++.+.+... +..+++
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~-aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~d~li 239 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQ-AAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLF 239 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHH-HHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCCSEEE
T ss_pred EEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHH-HHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcCCEEE
Confidence 4678899999999999887743 33333333311 133333211 0011123323344444332 268999
Q ss_pred EeCCCCCCccHHHHHHHhhcCCeEEEc
Q psy4122 116 LEGIEKAERNVLPVLNNLLENREMHLE 142 (162)
Q Consensus 116 lDEId~a~~~v~~~L~~lle~r~l~l~ 142 (162)
+||+-.+++..+..|..++....+.+-
T Consensus 240 iDE~sm~~~~~l~~l~~~~~~~~vilv 266 (446)
T 3vkw_A 240 IDEGLMLHTGCVNFLVEMSLCDIAYVY 266 (446)
T ss_dssp EETGGGSCHHHHHHHHHHTTCSEEEEE
T ss_pred EeCcccCCHHHHHHHHHhCCCCEEEEe
Confidence 999999999999988888877776663
No 177
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.56 E-value=4.2e-05 Score=58.34 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=23.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.+.|+|++||||||+++.+|. +|.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~ 29 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPL 29 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcc
Confidence 478999999999999999998 78774
No 178
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.55 E-value=5.3e-05 Score=60.41 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+..+.|+||+||||||+++.+|+.+|.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3567999999999999999999999998643
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.55 E-value=9.5e-05 Score=57.10 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=28.3
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
..|-+++. .+..|.-+.|.||||+|||+|+.++|..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44555553 3446778999999999999999999984
No 180
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.55 E-value=5.8e-05 Score=59.68 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|.-+.|.|++||||||+++.+++.++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999999886
No 181
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.54 E-value=0.0003 Score=55.97 Aligned_cols=95 Identities=7% Similarity=0.028 Sum_probs=53.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhh--hcceeEeecCeEEEec-cHHHHHhh-cCcEEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEAD--IKQRREIVNGTAIYYD-QSAVRAAI-EGRVLIL 116 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~d--L~g~~~~~~G~~~~~~-gpl~~A~~-~G~vlll 116 (162)
|+-.+++||.|+|||+.+...+.. .|..+..++...|....+ +..+..+.-......+ ..+...+. +-.+|+|
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 444568999999999999888754 477777777655543221 2211111000011111 11111122 2369999
Q ss_pred eCCCCCCccHHHHHHHhhcCCe
Q psy4122 117 EGIEKAERNVLPVLNNLLENRE 138 (162)
Q Consensus 117 DEId~a~~~v~~~L~~lle~r~ 138 (162)
||+.-++++.++.|..+.+.+.
T Consensus 108 DEaQF~~~~~V~~l~~l~~~~~ 129 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANRGY 129 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHTTC
T ss_pred ECcccCCHHHHHHHHHHhhCCC
Confidence 9999999998888888776553
No 182
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.51 E-value=0.00027 Score=55.49 Aligned_cols=96 Identities=10% Similarity=0.043 Sum_probs=58.5
Q ss_pred CCCcEEEEcCCCchHH-HHHHHHHH--HhCCceEEEEeccCCCh-hhhcceeEee-cCeEEEeccHHHHHhhcCcEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRR-SLAMSYLE--LTQREVEYICLSRDTTE-ADIKQRREIV-NGTAIYYDQSAVRAAIEGRVLILE 117 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT-~La~~lA~--~lg~p~~~v~~~~~~~~-~dL~g~~~~~-~G~~~~~~gpl~~A~~~G~vlllD 117 (162)
.++=.+++||.|+||| +|.+.+.+ ..+..+.++.-..|+.. .++..+.... +....-....+....+.-.+|+||
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~~DvIlID 98 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 98 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHTCSEEEES
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccCCCEEEEE
Confidence 4566789999999999 77777664 34667777765545442 2222110000 000000111233345556899999
Q ss_pred CCCCCCccHHHHHHHhhcCCeE
Q psy4122 118 GIEKAERNVLPVLNNLLENREM 139 (162)
Q Consensus 118 EId~a~~~v~~~L~~lle~r~l 139 (162)
|+.-+ +++.+.++.+.+.+.-
T Consensus 99 EaQFf-k~~ve~~~~L~~~gk~ 119 (195)
T 1w4r_A 99 EGQFF-PDIVEFCEAMANAGKT 119 (195)
T ss_dssp SGGGC-TTHHHHHHHHHHTTCE
T ss_pred chhhh-HHHHHHHHHHHHCCCe
Confidence 99999 8899999888876543
No 183
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.51 E-value=5.5e-05 Score=57.18 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.|+-+.|+||+||||||+++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999886
No 184
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.51 E-value=6.8e-05 Score=59.98 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=24.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH---hCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLEL---TQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~---lg~p~~ 73 (162)
..++|+|+|||||||+++.+++. .|.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 35899999999999999999987 677654
No 185
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.51 E-value=4.5e-05 Score=58.00 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
+..++|+|++||||||+++.+++.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 557999999999999999999987643
No 186
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.51 E-value=5.3e-05 Score=57.28 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.|+.+.|+||+||||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999876
No 187
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.51 E-value=4.8e-05 Score=58.00 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
..|..++. .+..|+.++|.||+|+|||+|+++++... +.++.++..
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34555554 45567889999999999999999999543 556655554
No 188
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.50 E-value=0.00015 Score=61.95 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
..++.+......|+.++|+||+||||||+++.++...+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 4444554556677789999999999999999999887654
No 189
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.49 E-value=4.5e-05 Score=57.40 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
|+.+.|+||+|+||||+++.++...+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC
Confidence 44678999999999999999998554
No 190
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.47 E-value=7.4e-05 Score=56.27 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+.|+|++||||||+++.+|+. |.++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~i 36 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVL 36 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEE
Confidence 5889999999999999999998 87643
No 191
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.47 E-value=0.00012 Score=62.81 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=23.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.-++|+|+|||||||+++.+++.++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcE
Confidence 458889999999999999999988764
No 192
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.45 E-value=7e-05 Score=57.83 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=24.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+-+.|+||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 466799999999999999999998874
No 193
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.45 E-value=0.0001 Score=57.82 Aligned_cols=32 Identities=9% Similarity=-0.090 Sum_probs=27.8
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..+..+.|+|++||||||+++.+|+.+|.++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 34667999999999999999999999997643
No 194
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.44 E-value=7.9e-05 Score=57.28 Aligned_cols=30 Identities=13% Similarity=0.106 Sum_probs=25.0
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
....|+.+.|+||.|||||||++.++..+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 455688899999999999999999998874
No 195
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.43 E-value=8.8e-05 Score=57.08 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=28.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC---CceEEEEec
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ---REVEYICLS 78 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg---~p~~~v~~~ 78 (162)
.|+-+.|+||+|+|||||++.++..+. ...-.+...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 456789999999999999999998875 234455543
No 196
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.42 E-value=6.3e-05 Score=56.54 Aligned_cols=26 Identities=35% Similarity=0.485 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+..++|+|++||||||+++.+|..++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999998764
No 197
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.41 E-value=9.2e-05 Score=55.98 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
++.+.|+||+||||||+++.++..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999998764
No 198
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.40 E-value=0.0001 Score=59.11 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=25.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
..+.|.||+||||||+++.+|+.+|.++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999764
No 199
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.40 E-value=0.00011 Score=56.96 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=25.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+.|+|++||||||+++.+++.+|.++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi 41 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV 41 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 4789999999999999999999898754
No 200
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.39 E-value=0.00012 Score=59.09 Aligned_cols=45 Identities=7% Similarity=-0.041 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEe
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICL 77 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~ 77 (162)
.|..+.-.+..|+-++|.||||+|||+|++++|... |.++.++..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 466677667788899999999999999999998654 445655544
No 201
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.39 E-value=0.00055 Score=51.60 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHH
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAM 62 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~ 62 (162)
+++.=.+.+..++ .++++++.+|+|+|||..+.
T Consensus 26 ~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 26 PSPIQEESIPIAL----SGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHH
T ss_pred CCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHH
Confidence 4444444444444 46899999999999996544
No 202
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.39 E-value=0.0001 Score=56.60 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+.+.|+||+|+|||||++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 367899999999999999999998763
No 203
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.38 E-value=9.7e-05 Score=62.09 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=26.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
+.++|+||+|||||+++..+|+.++.+ .+++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~--iis~ 36 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCE--LISV 36 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEE--EEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCc--EEec
Confidence 468999999999999999999999854 4444
No 204
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.38 E-value=0.00011 Score=62.58 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=25.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
+++|+|++|||||++++.+|..++.++
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 499999999999999999999998876
No 205
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.38 E-value=0.00014 Score=55.78 Aligned_cols=29 Identities=10% Similarity=-0.009 Sum_probs=25.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
..+.|+|++|||||++++.+|+.+|.++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 46899999999999999999999997743
No 206
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.37 E-value=0.00012 Score=56.42 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=23.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
..+.|+|++||||||+++.+++ +|.++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~ 31 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINV 31 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEE
Confidence 3588999999999999999998 88764
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.36 E-value=0.00013 Score=56.04 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|..++|+|++||||||+++.++..++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34566899999999999999999998764
No 208
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.36 E-value=0.00025 Score=54.69 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=33.7
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHH----HhCCceEEEEeccCCChhhhc
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLE----LTQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~----~lg~p~~~v~~~~~~~~~dL~ 87 (162)
.+..|.-+++.|+||+|||+++.++|. ..+.++.++++ +++..++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~--E~~~~~~~ 75 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL--EERARDLR 75 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES--SSCHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc--cCCHHHHH
Confidence 344677899999999999999999873 23677777765 45555553
No 209
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.35 E-value=0.0002 Score=59.57 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..|+.+......|+.+.|+||+|||||||++.++..+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3566777777788899999999999999999999887
No 210
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.35 E-value=0.00033 Score=57.75 Aligned_cols=57 Identities=11% Similarity=0.096 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhc
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIK 87 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~ 87 (162)
+....|-.++-.+..|.-++|.|+||+|||+++.++|... |.++.++++ +++..++.
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl--E~s~~~l~ 112 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL--EMGKKENI 112 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES--SSCHHHHH
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC--CCCHHHHH
Confidence 3455566666556677789999999999999999998532 456666665 45555443
No 211
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.33 E-value=0.00012 Score=55.93 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=28.6
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..|-+++. .+..|+-+.|+||+|||||||++.++...
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44545553 34467789999999999999999999754
No 212
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.32 E-value=0.00019 Score=55.53 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=22.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+|++|+||+|+|||||++.+.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5899999999999999999987764
No 213
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.30 E-value=0.00013 Score=57.90 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=24.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.|.|.|++||||||+++.+++.+|.+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 48899999999999999999999876
No 214
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.30 E-value=0.00019 Score=55.53 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=28.3
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHH--HH--hCCceEEEEe
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYL--EL--TQREVEYICL 77 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA--~~--lg~p~~~v~~ 77 (162)
.+..|+-+.|+||+|+|||||++.++ .. .+....++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 34468889999999999999999998 43 3444444443
No 215
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.30 E-value=0.00033 Score=70.73 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=35.7
Q ss_pred HHHHHHHHH--hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEecc
Q psy4122 31 LSHLRWILQ--KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSR 79 (162)
Q Consensus 31 ~~~L~~i~~--~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~ 79 (162)
...|-.++- .+..+++++|+||||||||+||.+++.. .|..+.++.+..
T Consensus 1412 ~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1412 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 334555554 3446789999999999999999998754 466676666643
No 216
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.30 E-value=0.0015 Score=53.61 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=54.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh---C-CceEEEEeccCCChhhhcceeEeecCeEEEeccHHHHH-hhcCcEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT---Q-REVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRA-AIEGRVLILE 117 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l---g-~p~~~v~~~~~~~~~dL~g~~~~~~G~~~~~~gpl~~A-~~~G~vlllD 117 (162)
.....+|+||+|.||++.++.+++.+ + .++..+...++.+..++... .-... +....++++|
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~plf~~~kvvii~ 83 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSL-------------CQAMSLFASRQTLLLL 83 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHH-------------HHHHHHCCSCEEEEEE
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHH-------------hcCcCCccCCeEEEEE
Confidence 34467888999999999999998765 3 23333444433344444310 00111 1234699999
Q ss_pred CCCC-CCccHHHHHHHhhcC
Q psy4122 118 GIEK-AERNVLPVLNNLLEN 136 (162)
Q Consensus 118 EId~-a~~~v~~~L~~lle~ 136 (162)
|.+. ++.+..+.|...+|+
T Consensus 84 ~~~~kl~~~~~~aLl~~le~ 103 (343)
T 1jr3_D 84 LPENGPNAAINEQLLTLTGL 103 (343)
T ss_dssp CCSSCCCTTHHHHHHHHHTT
T ss_pred CCCCCCChHHHHHHHHHHhc
Confidence 9999 999999999999996
No 217
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.29 E-value=0.00011 Score=55.98 Aligned_cols=27 Identities=15% Similarity=0.044 Sum_probs=24.1
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.+.-+.|+||+||||||+++.++..++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 355688999999999999999999887
No 218
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.28 E-value=0.00026 Score=54.57 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=29.5
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEec
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLS 78 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~ 78 (162)
+..|.-++|.||||+|||+++.++|.. .+.++.++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 446778999999999999999988753 36677666653
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.27 E-value=0.00017 Score=56.53 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+.+.|+||+|||||||++.+++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 577899999999999999999998764
No 220
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.26 E-value=0.00035 Score=61.77 Aligned_cols=49 Identities=8% Similarity=0.182 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
+++..++.+...+. .|+.++++||+||||||+.+.++..+......+.+
T Consensus 245 ~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 245 VPSGVLAYLWLAIE---HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp SCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 34555555554443 57889999999999999999999888544344444
No 221
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.26 E-value=0.00052 Score=59.27 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.++.....|+.++. ..+..++++||+|+||||+.+.++..++..
T Consensus 151 ~~~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 151 MTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp CCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 45666677777742 455679999999999999999999888654
No 222
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.25 E-value=0.00026 Score=53.14 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.9
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
....|+-+.|.||.|+|||||++.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567789999999999999999999988
No 223
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.25 E-value=0.00046 Score=58.19 Aligned_cols=59 Identities=17% Similarity=0.144 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccCCChhhhcc
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRDTTEADIKQ 88 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~~~~~dL~g 88 (162)
++....|-.++..+..|.-++|.|+||+|||+++.++|.. .|.++.++++ +++..++..
T Consensus 30 ~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl--Ems~~ql~~ 91 (338)
T 4a1f_A 30 PTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL--EMSAEQLAL 91 (338)
T ss_dssp CCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES--SSCHHHHHH
T ss_pred cCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC--CCCHHHHHH
Confidence 4455667777777778888999999999999999999854 4777777766 677777654
No 224
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.25 E-value=0.0001 Score=62.44 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=24.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
++.++|+||+|||||+|+..+|+.++.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~e 67 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLE 67 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCc
Confidence 3468999999999999999999998754
No 225
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.23 E-value=0.00012 Score=55.88 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.+.-+.|+|++||||||+++.++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45568899999999999999999877
No 226
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.23 E-value=0.00017 Score=58.08 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh-CC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT-QR 70 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l-g~ 70 (162)
.++|.|+|||||||+++.+++.+ |.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~ 29 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGF 29 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 58899999999999999999863 54
No 227
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.22 E-value=0.00087 Score=51.20 Aligned_cols=32 Identities=16% Similarity=-0.048 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYI 75 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v 75 (162)
+.-+.|.|++||||||+++.++..+ +.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 3458899999999999999999875 5555444
No 228
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.21 E-value=0.00025 Score=54.95 Aligned_cols=28 Identities=14% Similarity=-0.092 Sum_probs=26.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
-|.|.|++|||||++++.+|+.+|.++.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 5888999999999999999999999965
No 229
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.21 E-value=0.00019 Score=56.61 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 34 LRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 34 L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
|..+--....|.-+-|.||.|+||||+++.++..+|..
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 33333344455668999999999999999999988754
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.00041 Score=57.26 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh---------CCceEEEEeccCCChhhh
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT---------QREVEYICLSRDTTEADI 86 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l---------g~p~~~v~~~~~~~~~dL 86 (162)
..|-.++. .+..|.-+++.||||+|||+++.++|... +.++.++......++..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l 158 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERI 158 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 33444443 34456678999999999999999999764 455666665433334444
No 231
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.18 E-value=0.00063 Score=58.69 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH----hCCceEEEEeccCCChhhh
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL----TQREVEYICLSRDTTEADI 86 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~----lg~p~~~v~~~~~~~~~dL 86 (162)
....|-.++..+..|.-++|.|+||+|||+++.++|.. .|.++.++++ +++..++
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~--E~s~~~l 247 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL--EMSAQQL 247 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES--SSCHHHH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC--CCCHHHH
Confidence 44556667656667888999999999999999998853 2567777765 4444444
No 232
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.15 E-value=0.00082 Score=53.68 Aligned_cols=100 Identities=7% Similarity=0.013 Sum_probs=54.7
Q ss_pred CCCCcEEEEcCCCchHHH-HHHHHHH--HhCCceEEEEeccCCChh--hhcceeEeecCeEEEe-ccHHHHHh-hcCcEE
Q psy4122 42 NMSQDVFLIGKPGSLRRS-LAMSYLE--LTQREVEYICLSRDTTEA--DIKQRREIVNGTAIYY-DQSAVRAA-IEGRVL 114 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~-La~~lA~--~lg~p~~~v~~~~~~~~~--dL~g~~~~~~G~~~~~-~gpl~~A~-~~G~vl 114 (162)
..|.-.+++||-|+|||+ |.+.+-+ ..|..+..++...|+..+ .+..+..+.-...... ...+...+ ..-.+|
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV 105 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVI 105 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEE
Confidence 345567889999999999 4444332 236676666665554332 1221100100011111 11222222 234699
Q ss_pred EEeCCCCCCccHHHHHHHhhcCCeEEE
Q psy4122 115 ILEGIEKAERNVLPVLNNLLENREMHL 141 (162)
Q Consensus 115 llDEId~a~~~v~~~L~~lle~r~l~l 141 (162)
++||+.-+++++.+.|..+.+.+.-++
T Consensus 106 ~IDEaQFf~~~~v~~l~~la~~gi~Vi 132 (219)
T 3e2i_A 106 GIDEVQFFDDEIVSIVEKLSADGHRVI 132 (219)
T ss_dssp EECCGGGSCTHHHHHHHHHHHTTCEEE
T ss_pred EEechhcCCHHHHHHHHHHHHCCCEEE
Confidence 999999999999999999987665444
No 233
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.13 E-value=0.0022 Score=49.24 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=17.2
Q ss_pred CCCcEEEEcCCCchHHHHHH
Q psy4122 43 MSQDVFLIGKPGSLRRSLAM 62 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~ 62 (162)
.|+++++.+|+|+|||..+.
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 47899999999999997543
No 234
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.13 E-value=0.00014 Score=55.30 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
-+.++|++||||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998875
No 235
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.13 E-value=0.00075 Score=58.07 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH----hCCceEEEEeccCCChhhhc
Q psy4122 29 DWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL----TQREVEYICLSRDTTEADIK 87 (162)
Q Consensus 29 ~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~----lg~p~~~v~~~~~~~~~dL~ 87 (162)
+....|-.++..+..|.-++|.|+||+|||+++.++|.. .|.++.++++ +++..++.
T Consensus 185 tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl--E~~~~~l~ 245 (444)
T 2q6t_A 185 TGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL--EMPAAQLT 245 (444)
T ss_dssp CSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES--SSCHHHHH
T ss_pred CCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC--CCCHHHHH
Confidence 345567777756667878999999999999999998853 2567777666 45554443
No 236
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.11 E-value=0.0002 Score=53.66 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.7
Q ss_pred CCCcEEEEcCCCchHHHHHHH
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMS 63 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~ 63 (162)
.|+-+.|+||+|||||||++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 466789999999999999994
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.11 E-value=0.0027 Score=49.78 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=30.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHH---HhCCceEEEEeccC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLE---LTQREVEYICLSRD 80 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~~~ 80 (162)
...+++++++|.||||.|-.+|- -.|..+..+++-..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg 67 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG 67 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence 34899999999999999998773 45888888988643
No 238
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.001 Score=50.66 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 27 TQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
.....+.++..+..... ..+.++|++|+|||||+.+++..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~-~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 14 NKRLAEKNREALRESGT-VAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp HHHHHHHHHHHHHHHTC-EEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhhcccCc-eEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 35566677766643322 36899999999999999999977543
No 239
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.10 E-value=0.00052 Score=68.43 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=29.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEecc
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSR 79 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~ 79 (162)
.|+.++++||||||||.||.++|.. .|-|..++.+.+
T Consensus 1081 ~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1081 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEccc
Confidence 3456999999999999999999853 367777777643
No 240
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.09 E-value=0.00066 Score=56.60 Aligned_cols=55 Identities=7% Similarity=-0.011 Sum_probs=36.3
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh---------CCceEEEEeccCCChhhh
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT---------QREVEYICLSRDTTEADI 86 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l---------g~p~~~v~~~~~~~~~dL 86 (162)
..|-.++. .+..|.-++|.||||+|||+++.++|... +.++.++......++..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l 173 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRL 173 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHH
Confidence 33444443 34456678999999999999999999752 455666666433344444
No 241
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.09 E-value=0.0026 Score=54.06 Aligned_cols=112 Identities=11% Similarity=0.005 Sum_probs=63.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEeccCCC---hhhhc--c-e-eEee-cC-
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTT---EADIK--Q-R-REIV-NG- 95 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~~~~~---~~dL~--g-~-~~~~-~G- 95 (162)
.+.|.=.+.+..++. +.+++|.+|+|+|||..+-..+...+.+...+.-..... ...+. + . ...- ++
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~ 168 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRI 168 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSC
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCc
Confidence 456666666666554 457999999999999999888887777665443321110 11111 1 1 1111 11
Q ss_pred ----e-EEEeccHHHHHh----hcCcEEEEeCCCCCCccHHHHHHHhhcCCeEE
Q psy4122 96 ----T-AIYYDQSAVRAA----IEGRVLILEGIEKAERNVLPVLNNLLENREMH 140 (162)
Q Consensus 96 ----~-~~~~~gpl~~A~----~~G~vlllDEId~a~~~v~~~L~~lle~r~l~ 140 (162)
. .+-.++.+...+ ..=+++|+||.|++.......+...+....+.
T Consensus 169 ~~~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l 222 (472)
T 2fwr_A 169 KELKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRL 222 (472)
T ss_dssp BCCCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEE
T ss_pred CCcCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHhcCCCeEE
Confidence 1 122222332222 12379999999998766555555555544443
No 242
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.08 E-value=0.00032 Score=56.89 Aligned_cols=26 Identities=23% Similarity=0.085 Sum_probs=22.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.+.|+|++||||||+++.++ .+|.++
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg~~~ 102 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLGAYI 102 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCcE
Confidence 48999999999999999999 578764
No 243
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.08 E-value=0.0004 Score=58.45 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=32.8
Q ss_pred HHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 35 RWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 35 ~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
+.+-.....|+.++|+||+|+||||+++.++......--.+.+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 33433445688999999999999999999998876444445443
No 244
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.07 E-value=0.00019 Score=55.79 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCchHHHHHHHHH-HHh
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYL-ELT 68 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA-~~l 68 (162)
.|+-+.|+||+||||||+++.++ ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 46778999999999999999999 775
No 245
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.06 E-value=0.00067 Score=58.82 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhhhc
Q psy4122 30 WLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEADIK 87 (162)
Q Consensus 30 ~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~dL~ 87 (162)
....|-.++..+..|.-+++.|+||+|||+++.++|... |.++.++++ +++..++.
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl--Ems~~ql~ 241 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL--EMGKKENI 241 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS--SSCTTHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC--CCCHHHHH
Confidence 344556666566677789999999999999999988533 667666655 45555443
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.05 E-value=0.00037 Score=54.87 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=24.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+.+.|+||.|+|||||.+.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 477899999999999999999998774
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.04 E-value=0.00052 Score=58.00 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=25.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
..+.|.||+|+|||+++..+|..++. ..+++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~--~iis~ 38 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNG--EIISG 38 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTE--EEEEC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCC--ceecc
Confidence 35889999999999999999999983 34544
No 248
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.03 E-value=0.0012 Score=50.47 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+...+.++.+..... ...+.++|++|+|||+|+.+++....
T Consensus 23 ~~~a~~~r~~~~~~~-~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHG-VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTT-CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456677777665432 23688999999999999999997653
No 249
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.02 E-value=0.00038 Score=55.78 Aligned_cols=29 Identities=14% Similarity=0.031 Sum_probs=24.3
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.+..|.-++|+||+|+|||+|+.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34467789999999999999999998543
No 250
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.01 E-value=0.00087 Score=58.35 Aligned_cols=54 Identities=6% Similarity=0.011 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEeccCCChhhhc
Q psy4122 32 SHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICLSRDTTEADIK 87 (162)
Q Consensus 32 ~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~~~~~~~dL~ 87 (162)
..|-.++..+..|.-++|.|+||+|||+++.++|... |.++.++++ +++..++.
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~--E~s~~~l~ 287 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML--EESVEETA 287 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES--SSCHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec--cCCHHHHH
Confidence 3444555556677778999999999999999998543 567766665 55555543
No 251
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.00 E-value=0.0043 Score=49.94 Aligned_cols=94 Identities=11% Similarity=0.046 Sum_probs=52.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHH---HhCCceEEEEeccCCChh-hhcceeEee-cCeEEEeccHHHHHhhcCcEEEEe
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLE---LTQREVEYICLSRDTTEA-DIKQRREIV-NGTAIYYDQSAVRAAIEGRVLILE 117 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~---~lg~p~~~v~~~~~~~~~-dL~g~~~~~-~G~~~~~~gpl~~A~~~G~vlllD 117 (162)
.|+-.+++||.|+|||+.+-..+. ..|+.+..++...|+... .+..+..+. .....+....+...+.+-.+|+||
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~~dvViID 97 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGID 97 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTTCSEEEES
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhccCCEEEEE
Confidence 466678899999999977776653 346777777766555432 111111110 011123322333334445799999
Q ss_pred CCCCCCccHHHHHHHhhcCC
Q psy4122 118 GIEKAERNVLPVLNNLLENR 137 (162)
Q Consensus 118 EId~a~~~v~~~L~~lle~r 137 (162)
|+.-+.. +.+.+..+.+.+
T Consensus 98 EaQF~~~-v~el~~~l~~~g 116 (234)
T 2orv_A 98 EGQFFPD-IVEFCEAMANAG 116 (234)
T ss_dssp SGGGCTT-HHHHHHHHHHTT
T ss_pred chhhhhh-HHHHHHHHHhCC
Confidence 9999975 655555554433
No 252
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.99 E-value=0.00066 Score=54.00 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh-------CCceEEE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT-------QREVEYI 75 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l-------g~p~~~v 75 (162)
.|.-+.+.|++||||||+++.+++.+ |.++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 46678999999999999999999876 6665433
No 253
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.99 E-value=0.0012 Score=55.12 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=27.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
.+.++|+||+||||++..++..+ |..+..+.+.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 58999999999999999998765 6666666554
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.96 E-value=0.00042 Score=58.17 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=25.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
+.+++.||+|||||+|+..+|+.++.+ .+++
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~--iis~ 41 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVE--LISV 41 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEE--EEEC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCc--EEec
Confidence 357889999999999999999998754 4444
No 255
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.96 E-value=0.0032 Score=61.31 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=26.0
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
....|+.+.++||+|||||||++.+......
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 3446889999999999999999999876643
No 256
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.95 E-value=0.00031 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.290 Sum_probs=23.0
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
.|+-+.|+||.|||||||.+.++..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4888999999999999999999976
No 257
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=0.00089 Score=55.98 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=21.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
-+.|.||+||||||+++.++..++
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 378899999999999999999886
No 258
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.93 E-value=0.0006 Score=52.73 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=26.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
++++|++|+|||++|+++|.. +.|+.++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 689999999999999999977 8887766553
No 259
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.88 E-value=0.00049 Score=57.88 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=22.9
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
+.+++.||+|||||+|+..+|+.++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 35788999999999999999998864
No 260
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.87 E-value=0.00071 Score=53.59 Aligned_cols=28 Identities=14% Similarity=-0.065 Sum_probs=25.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
-+.+.|++|||||++++.+|+.+|.++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 4788899999999999999999999865
No 261
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.00089 Score=49.61 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhcCC-----CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 27 TQDWLSHLRWILQKDNM-----SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 27 ~~~~~~~L~~i~~~~~~-----g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
-....+.++.++..... ...++++|++|+|||+|+..++...
T Consensus 26 ~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 35556666655543321 1268999999999999999998653
No 262
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.87 E-value=0.0011 Score=56.26 Aligned_cols=51 Identities=12% Similarity=0.005 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHH--hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEec
Q psy4122 28 QDWLSHLRWILQ--KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLS 78 (162)
Q Consensus 28 ~~~~~~L~~i~~--~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~ 78 (162)
++....|-.++- .+..|.-++|.||||||||+|+.++|.. .+.++.++...
T Consensus 43 ~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 43 PTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 444566667765 4556778999999999999999999865 36667666554
No 263
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.86 E-value=0.00066 Score=60.22 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHh-cCCCCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 27 TQDWLSHLRWILQK-DNMSQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 27 ~~~~~~~L~~i~~~-~~~g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
.|+..+.++..... ...+..++|+|.+||||||+++.+|+.++.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46677777765532 224557999999999999999999999985
No 264
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.86 E-value=0.00062 Score=60.82 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 28 QDWLSHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 28 ~~~~~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+...+.++.-.. ....|..+.|+|++|||||||++.+|..++
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 455555554332 233577899999999999999999999885
No 265
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.86 E-value=0.00082 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=25.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+-|.|+||+||||+++.+|+.+|.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 4678999999999999999999998743
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.85 E-value=0.00043 Score=54.80 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
++-++|.||+|+|||++|..+++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45689999999999999999998765
No 267
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.85 E-value=0.0016 Score=56.45 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEec
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICLS 78 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~~ 78 (162)
...|..+ -.+..|+-+.|+||.|||||||.+.+|.......-.+.+.
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~ 191 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLI 191 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEe
Confidence 3466677 6677889999999999999999999999986555455554
No 268
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.85 E-value=0.00059 Score=57.04 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
++.+.|+||+|||||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6689999999999999999999987643
No 269
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.85 E-value=0.0014 Score=55.13 Aligned_cols=51 Identities=12% Similarity=-0.000 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHH--hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEec
Q psy4122 28 QDWLSHLRWILQ--KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLS 78 (162)
Q Consensus 28 ~~~~~~L~~i~~--~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~ 78 (162)
++....|-.++. .+..|.-++|.||||+|||+|+.++|.. .|.++.++...
T Consensus 43 ~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 43 PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 344555666665 4556778999999999999999999854 36677777664
No 270
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.84 E-value=0.0008 Score=60.46 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHH-HHHHhCCc
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMS-YLELTQRE 71 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~-lA~~lg~p 71 (162)
++++=.+.++.++. .....++.||||||||+.+-+ ++.++...
T Consensus 190 LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~ 233 (646)
T 4b3f_X 190 LDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG 233 (646)
T ss_dssp CCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 56666666766654 233578889999999975544 44444333
No 271
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.83 E-value=0.00067 Score=48.39 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|+++++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999854
No 272
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.82 E-value=0.00094 Score=54.75 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|.-+.|+||+||||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445689999999999999999999876
No 273
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.81 E-value=0.00078 Score=50.05 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
-.+|+||.|||||+|+++++..++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5789999999999999999988753
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.81 E-value=0.0007 Score=55.98 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
++.+.|+||.||||||+++.+|..+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56789999999999999999997763
No 275
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.80 E-value=0.00087 Score=53.15 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=24.5
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|+||.|||||||.+.++....
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3588899999999999999999997654
No 276
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.79 E-value=0.00093 Score=60.72 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceEEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVEYI 75 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v 75 (162)
+..++|+|.+||||||+++.+++.+ |.++..+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3458999999999999999999998 8886543
No 277
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.79 E-value=0.00099 Score=55.58 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 33 HLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 33 ~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
.++.+......+..+.|+||||+|||||.+.++..+ +..+.....
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 344444444566679999999999999999999765 444444433
No 278
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.79 E-value=0.00072 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.+.|+|++|||||||++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 279
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.79 E-value=0.0014 Score=53.71 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
-+.+.|++||||||+++.++..++
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478899999999999999998875
No 280
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.79 E-value=0.0032 Score=53.17 Aligned_cols=48 Identities=8% Similarity=0.077 Sum_probs=32.9
Q ss_pred HHHHHHHH-----hcCCCCcEEEEcCCCchHHHHHHHHHHHh-----CCceEEEEeccC
Q psy4122 32 SHLRWILQ-----KDNMSQDVFLIGKPGSLRRSLAMSYLELT-----QREVEYICLSRD 80 (162)
Q Consensus 32 ~~L~~i~~-----~~~~g~~vlL~GppG~GKT~La~~lA~~l-----g~p~~~v~~~~~ 80 (162)
..|-.++- .+..| -+++.||||+|||+|+-+++... |..+.++..-..
T Consensus 12 ~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp HHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred HHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 34445554 24456 68999999999999999887543 556666665433
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.78 E-value=0.00073 Score=47.96 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 282
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.78 E-value=0.00074 Score=48.37 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.78 E-value=0.00077 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 284
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.78 E-value=0.0024 Score=62.10 Aligned_cols=30 Identities=13% Similarity=0.177 Sum_probs=25.9
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
....|+.+-|+|++|||||||++.+.+...
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 455689999999999999999999987653
No 285
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.77 E-value=0.00075 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.+.|+|++|+|||+|++.++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 286
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.77 E-value=0.00098 Score=52.41 Aligned_cols=28 Identities=25% Similarity=0.202 Sum_probs=24.4
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|+||.|||||||.+.++....
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3577899999999999999999997664
No 287
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.76 E-value=0.0014 Score=55.44 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHH--hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEec
Q psy4122 28 QDWLSHLRWILQ--KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLS 78 (162)
Q Consensus 28 ~~~~~~L~~i~~--~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~ 78 (162)
++....|-.++. .+..|.-+++.|+||+|||+||.++|.. .|.++.++...
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344555666664 4556778999999999999999998854 36777777764
No 288
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.76 E-value=0.00077 Score=48.72 Aligned_cols=21 Identities=38% Similarity=0.582 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 589999999999999998863
No 289
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.75 E-value=0.0012 Score=54.07 Aligned_cols=37 Identities=16% Similarity=-0.024 Sum_probs=27.8
Q ss_pred HHHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 31 LSHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 31 ~~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
...|-.++. .+..|.-+++.||||+|||+++.++|..
T Consensus 84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555553 3445667899999999999999999964
No 290
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.75 E-value=0.0014 Score=54.92 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=28.4
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..|-.++. .+..|.-+.|+||+|||||+|+.+++...
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444543 33466678999999999999999999876
No 291
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.75 E-value=0.001 Score=53.67 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.0
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|+||.|||||||.+.++....
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578899999999999999999997764
No 292
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.74 E-value=0.00064 Score=50.53 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|||||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999875
No 293
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.74 E-value=0.00073 Score=55.99 Aligned_cols=27 Identities=11% Similarity=-0.024 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|.-+.|.||+|||||||++.++..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 455689999999999999999998774
No 294
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.72 E-value=0.00083 Score=49.02 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.+.|+|++|+|||+|.+.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 295
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.72 E-value=0.013 Score=56.35 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCC--cEEEEcCCCchHHHHHHHHH
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQ--DVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~--~vlL~GppG~GKT~La~~lA 65 (162)
.++|.=.+.+..++.....++ ++++.||+|+|||..+...|
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 357777777777777655565 79999999999998876444
No 296
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.72 E-value=0.00088 Score=47.74 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998853
No 297
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.72 E-value=0.00088 Score=47.95 Aligned_cols=22 Identities=14% Similarity=0.406 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 298
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.72 E-value=0.0015 Score=51.19 Aligned_cols=30 Identities=23% Similarity=0.061 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh---CCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT---QREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l---g~p~~ 73 (162)
|.-+.+.|++||||||+++.+++.+ |.++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 5578899999999999999999876 45554
No 299
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.72 E-value=0.0031 Score=62.92 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHHHHHHHHH--hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEeccC
Q psy4122 29 DWLSHLRWILQ--KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLSRD 80 (162)
Q Consensus 29 ~~~~~L~~i~~--~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~~~ 80 (162)
+.+..|-.++. .+..|..++|+||||||||+||.+++.. .|.++.++.+...
T Consensus 17 TGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~ 73 (1706)
T 3cmw_A 17 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 73 (1706)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred cCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCc
Confidence 34455666664 4557789999999999999999998853 4777888877543
No 300
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.71 E-value=0.026 Score=49.17 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=25.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
.++++|++|+||||++..+|..+ |..+..+.+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 57899999999999999998655 5665555553
No 301
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.71 E-value=0.0007 Score=53.75 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=24.5
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
...|+-+.|+||.|||||||.+.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458889999999999999999998765
No 302
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.71 E-value=0.00093 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.4
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.++++|++|+|||+|++.+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999987543
No 303
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.71 E-value=0.0022 Score=53.97 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 31 LSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 31 ~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
...+..+ ..+..|+-+.|+||.|||||||.+.++.......-.+.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 4566666 666788999999999999999999999998755444444
No 304
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.71 E-value=0.0008 Score=55.50 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|+.+.|+||.||||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 305
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.69 E-value=0.00095 Score=47.99 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998854
No 306
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.69 E-value=0.00096 Score=48.41 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 307
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.69 E-value=0.0015 Score=50.78 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh--CCceE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT--QREVE 73 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l--g~p~~ 73 (162)
|+-+.+.|+.||||||.++.+++.+ |.++.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 4568899999999999999999887 44544
No 308
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.68 E-value=0.0015 Score=57.72 Aligned_cols=26 Identities=8% Similarity=0.151 Sum_probs=23.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
-++|+|.||+||||+++.+|+.++.+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 58899999999999999999988543
No 309
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.68 E-value=0.00095 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998843
No 310
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.67 E-value=0.00095 Score=47.87 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999874
No 311
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.67 E-value=0.001 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 312
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.67 E-value=0.0013 Score=52.83 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|+||.|||||||.+.++....
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578899999999999999999997764
No 313
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.67 E-value=0.002 Score=50.85 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=27.8
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCceEEE
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREVEYI 75 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~~~v 75 (162)
.|.-+.+.|++|+||||+++.+++.++.+...+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 367799999999999999999999998754333
No 314
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.67 E-value=0.0014 Score=51.47 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=24.6
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|+||.|||||||.+.++....
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3588899999999999999999997653
No 315
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.67 E-value=0.001 Score=48.63 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=23.8
Q ss_pred HHHHHHhcCC---CCcEEEEcCCCchHHHHHHHHH
Q psy4122 34 LRWILQKDNM---SQDVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 34 L~~i~~~~~~---g~~vlL~GppG~GKT~La~~lA 65 (162)
++.++..+.. ...++++|++|+|||+|++.+.
T Consensus 5 ~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 5 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp HHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred HHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHh
Confidence 4455554433 2369999999999999998775
No 316
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.66 E-value=0.0095 Score=49.21 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=19.1
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHH
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMS 63 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~ 63 (162)
.+..++++++.+|+|+|||..+..
T Consensus 70 ~i~~~~~~lv~a~TGsGKT~~~~~ 93 (410)
T 2j0s_A 70 QIIKGRDVIAQSQSGTGKTATFSI 93 (410)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHH
T ss_pred HHhCCCCEEEECCCCCCchHHHHH
Confidence 344578999999999999976654
No 317
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.65 E-value=0.00089 Score=50.74 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHH
Q psy4122 28 QDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~ 66 (162)
+++.++|+.+.... ..-.++++|++|+|||+|++.+..
T Consensus 15 ~~~~~~m~~~~~~~-~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 15 VPRGSHMENLYFQG-QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ----------------CEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccchhHHHhHhhcC-CeEEEEEECcCCCCHHHHHHHHHh
Confidence 55666666655432 223799999999999999998885
No 318
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.65 E-value=0.00096 Score=58.57 Aligned_cols=46 Identities=7% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHH--HHHh--CCceEEEEe
Q psy4122 32 SHLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSY--LELT--QREVEYICL 77 (162)
Q Consensus 32 ~~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~l--A~~l--g~p~~~v~~ 77 (162)
..|..+.- .+..|+.++|+||+|||||||++++ +... +....++..
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 34666666 6667889999999999999999994 4544 444455554
No 319
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.65 E-value=0.0013 Score=52.14 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=24.6
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|+||.|||||||.+.++....
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3578899999999999999999997654
No 320
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.00097 Score=52.19 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=22.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..+.+.|++||||||+++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999884
No 321
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.64 E-value=0.0037 Score=51.96 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.5
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEecc
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLSR 79 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~ 79 (162)
..+..+.++|+||+||||+++.++..+ +..+..+....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 345578999999999999999998654 55555555443
No 322
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.64 E-value=0.0011 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 323
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.64 E-value=0.001 Score=50.43 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=21.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..++++|++|+|||+|+.+++...
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998654
No 324
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.64 E-value=0.0013 Score=53.33 Aligned_cols=30 Identities=23% Similarity=0.170 Sum_probs=25.7
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
....|+.+.|+||.|||||||.+.++....
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344688899999999999999999997764
No 325
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.64 E-value=0.0014 Score=52.43 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.7
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|+||.|||||||.+.++....
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3578899999999999999999997764
No 326
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.64 E-value=0.001 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999863
No 327
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.64 E-value=0.001 Score=53.71 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.5
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
...|+-+.|+||.|||||||.+.++...
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4458889999999999999999999863
No 328
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.63 E-value=0.0011 Score=47.40 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=19.5
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 329
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.63 E-value=0.0015 Score=51.58 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=25.1
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+.+.|+||.|||||||.+.++....
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34588899999999999999999997764
No 330
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.63 E-value=0.0026 Score=54.55 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=25.8
Q ss_pred HHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 33 HLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 33 ~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
.|-+++. .+..|.-+.|.||||||||+|+.++|..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3444442 3345677999999999999999988744
No 331
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.63 E-value=0.0011 Score=48.54 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999853
No 332
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.62 E-value=0.0025 Score=54.08 Aligned_cols=51 Identities=12% Similarity=0.034 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHH--hcCCCCcEEEEcCCCchHHHHHHHHHHH---hCCceEEEEec
Q psy4122 28 QDWLSHLRWILQ--KDNMSQDVFLIGKPGSLRRSLAMSYLEL---TQREVEYICLS 78 (162)
Q Consensus 28 ~~~~~~L~~i~~--~~~~g~~vlL~GppG~GKT~La~~lA~~---lg~p~~~v~~~ 78 (162)
++....|-.++. .+..|.-+++.||||+|||+|+.++|.. .|.++.++.+.
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 444556666665 4556778999999999999999998854 36777777774
No 333
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.62 E-value=0.0011 Score=48.86 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.+.|+|++|+|||+|++.++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999875
No 334
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.62 E-value=0.0011 Score=47.39 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 335
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.61 E-value=0.0012 Score=54.32 Aligned_cols=36 Identities=14% Similarity=0.352 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh----CCceEEEEec
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT----QREVEYICLS 78 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l----g~p~~~v~~~ 78 (162)
.++.++++||+|+||||++..+|..+ |..+..+.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 35578999999999999999999654 5555555543
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.61 E-value=0.00091 Score=50.81 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=22.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+.+.++|++|||||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998764
No 337
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.61 E-value=0.0014 Score=53.00 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=25.0
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|+||.|||||||.+.++....
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34578899999999999999999997764
No 338
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.60 E-value=0.016 Score=50.82 Aligned_cols=44 Identities=7% Similarity=-0.093 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHhcCCC-CcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 25 ALTQDWLSHLRWILQKDNMS-QDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g-~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.+.+.=.+.+++++..+..+ +++++.+|+|+|||..+-.++..+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHH
Confidence 46677777777777765545 469999999999999987777543
No 339
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.60 E-value=0.00097 Score=49.26 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
+..+.|+|++|+|||+|.+.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999853
No 340
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.59 E-value=0.0011 Score=47.65 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=18.4
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA 65 (162)
.++++|++|+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999999885
No 341
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.59 E-value=0.0012 Score=53.60 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=21.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
++.|+||+|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999997763
No 342
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.59 E-value=0.0012 Score=52.71 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=23.5
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
..|+.+.|+||.|||||||.+.++..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35788999999999999999999986
No 343
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.58 E-value=0.0014 Score=52.66 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=25.2
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+.+.|+||.|+|||||.+.++....
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34678899999999999999999997764
No 344
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.58 E-value=0.0016 Score=53.16 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=25.0
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|+||.|||||||.+.++....
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34578899999999999999999997764
No 345
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.58 E-value=0.0012 Score=47.68 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999884
No 346
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.57 E-value=0.0013 Score=47.70 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.57 E-value=0.0013 Score=47.59 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999854
No 348
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.57 E-value=0.0012 Score=47.90 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999999874
No 349
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.57 E-value=0.0024 Score=49.81 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCchHHHHHHHHH
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA 65 (162)
.|+.+++.||+|||||++...+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 47889999999999998766544
No 350
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.56 E-value=0.00085 Score=53.35 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+.+.|+||.|||||||.+.++....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578899999999999999999997653
No 351
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.56 E-value=0.001 Score=53.57 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=25.8
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
....|+.+.|+||.|||||||.+.++....
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344688899999999999999999998764
No 352
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.56 E-value=0.0018 Score=55.02 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|.||.|||||||.+.+|....
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 33578899999999999999999997653
No 353
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.56 E-value=0.0016 Score=52.40 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=25.0
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|+||.|||||||.+.++....
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578899999999999999999997764
No 354
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.55 E-value=0.0013 Score=47.25 Aligned_cols=21 Identities=10% Similarity=0.306 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999874
No 355
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.55 E-value=0.0016 Score=52.49 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|+||.|||||||.+.++....
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34578899999999999999999997653
No 356
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.54 E-value=0.0013 Score=56.97 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=25.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceEEEEe
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVEYICL 77 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~~v~~ 77 (162)
.+++.||+|+|||+|+..+|+.++.+ .+++
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~--iis~ 33 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGE--VINS 33 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEE--EEEC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCe--Eeec
Confidence 47889999999999999999998754 4554
No 357
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.53 E-value=0.0012 Score=55.16 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|.-+.|+||+||||||+++.+|..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999765
No 358
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.53 E-value=0.0014 Score=48.43 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999854
No 359
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.53 E-value=0.0019 Score=54.56 Aligned_cols=29 Identities=7% Similarity=0.068 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|.||.|||||||.+.+|....
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34578899999999999999999997754
No 360
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.53 E-value=0.0012 Score=48.51 Aligned_cols=21 Identities=10% Similarity=0.235 Sum_probs=19.2
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999874
No 361
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.52 E-value=0.0013 Score=54.53 Aligned_cols=33 Identities=9% Similarity=0.136 Sum_probs=25.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
+-++++||+||||||++..+|..+ |..+..+.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 358899999999999999999765 444444443
No 362
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.52 E-value=0.0014 Score=47.48 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=19.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
..++++|++|+|||+|++.+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999874
No 363
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.52 E-value=0.0012 Score=48.09 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998863
No 364
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.51 E-value=0.0014 Score=47.64 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999998853
No 365
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.51 E-value=0.0015 Score=47.87 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=20.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 366
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.51 E-value=0.0015 Score=47.76 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 367
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.51 E-value=0.0014 Score=47.95 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 368
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.50 E-value=0.0029 Score=56.76 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
++++-.+.+..++. +...++.||||||||+++..++..
T Consensus 181 ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp CCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHH
Confidence 56666666666653 447889999999999988776654
No 369
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.50 E-value=0.0019 Score=52.65 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=25.0
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|+||.|||||||.+.++....
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34578899999999999999999997764
No 370
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.50 E-value=0.0012 Score=53.40 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=24.5
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
...|+-+.|+||.|||||||.+.++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458889999999999999999999765
No 371
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0032 Score=54.97 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=27.4
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.+-.....|+-+.|+||.|||||||++.++...
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 344455678899999999999999999999764
No 372
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.49 E-value=0.00055 Score=51.55 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=20.9
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHH
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~ 66 (162)
.+..+.|+|++|+|||||++.++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999998764
No 373
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.49 E-value=0.0015 Score=47.46 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998853
No 374
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.49 E-value=0.0015 Score=48.45 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998863
No 375
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.49 E-value=0.0015 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.49 E-value=0.0015 Score=48.21 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.48 E-value=0.0033 Score=47.96 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=25.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
-+.+.|++|+|||++++.++..+ |..+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 47899999999999999998764 556655554
No 378
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.48 E-value=0.0014 Score=47.53 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=18.6
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA 65 (162)
.++++|++|+|||+|++.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999876
No 379
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.48 E-value=0.0032 Score=50.22 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.+.|+|+||||||||.+++..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999864
No 380
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.48 E-value=0.0022 Score=54.37 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.5
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|.||.|||||||.+.+|....
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 3577899999999999999999997754
No 381
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.015 Score=55.76 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHH
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA 65 (162)
.++|.=.+.+..+ ..++++++.||||+|||..+...+
T Consensus 184 ~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i 220 (1108)
T 3l9o_A 184 TLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAI 220 (1108)
T ss_dssp CCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHH
Confidence 3555555555554 457899999999999998876544
No 382
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.46 E-value=0.0023 Score=54.29 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=24.5
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|.||.|||||||.+.+|....
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 3577899999999999999999997653
No 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.46 E-value=0.0023 Score=54.78 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|+||.|||||||.+.+|....
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4578899999999999999999997764
No 384
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.45 E-value=0.0016 Score=47.60 Aligned_cols=22 Identities=14% Similarity=0.480 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998853
No 385
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.45 E-value=0.0017 Score=47.38 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 386
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.44 E-value=0.0013 Score=56.87 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=23.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCc
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQRE 71 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p 71 (162)
.++|+|.||+||||+++.+|+.++.+
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 58999999999999999999887543
No 387
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.43 E-value=0.0028 Score=50.63 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.+.|+|+||||||||.+++..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999998864
No 388
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.43 E-value=0.0014 Score=48.41 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
..++++|++|+|||+|++++..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3699999999999999999874
No 389
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.43 E-value=0.009 Score=44.72 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
.+.+.=.+.+..++. ++++++.+|+|+|||.++...+..
T Consensus 33 ~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 33 QLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHH
Confidence 456666666666664 679999999999999998876643
No 390
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0015 Score=55.39 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|+.+.|+||.||||||+++.+|..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4468999999999999999999876
No 391
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.42 E-value=0.0025 Score=54.02 Aligned_cols=29 Identities=21% Similarity=0.162 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|.||.|||||||.+.+|....
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 33578899999999999999999997653
No 392
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.42 E-value=0.0025 Score=54.22 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=24.8
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|.||.|||||||.+.+|....
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 33578899999999999999999997653
No 393
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.41 E-value=0.0026 Score=50.71 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=22.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+.+.|+||.|||||||.+.++....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6789999999999999999997764
No 394
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.41 E-value=0.0015 Score=52.40 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+.+.|+||.|+|||||.+.++....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33578899999999999999999997753
No 395
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.41 E-value=0.0018 Score=47.94 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998854
No 396
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.40 E-value=0.0021 Score=53.25 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.7
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
....|+.+.|+||.|||||||++.++....
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 344688899999999999999999987664
No 397
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.40 E-value=0.00071 Score=53.73 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+.-+.|.|++||||||+++.+++.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999999883
No 398
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.40 E-value=0.0019 Score=46.95 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~ 67 (162)
-.++++|++|+|||+|++.+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999998853
No 399
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.39 E-value=0.002 Score=54.40 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=24.8
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|.||.|||||||.+.+|....
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34578899999999999999999997653
No 400
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.39 E-value=0.002 Score=48.03 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6999999999999999998854
No 401
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.39 E-value=0.0016 Score=47.77 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988643
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.39 E-value=0.0019 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=20.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~ 67 (162)
..++++|++|+|||+|++.+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998864
No 403
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.38 E-value=0.0019 Score=47.76 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998753
No 404
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.38 E-value=0.0026 Score=54.04 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
..|+-+.|.||.|||||||.+.+|....
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 3577899999999999999999997654
No 405
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.38 E-value=0.00074 Score=55.23 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=18.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg 69 (162)
-+.|.||+||||||+++.+++.+|
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 478899999999999999998776
No 406
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.38 E-value=0.002 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|||||+|++.+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988753
No 407
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.38 E-value=0.0035 Score=55.61 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|.-+.|+|+.||||||+++.+|..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4468999999999999999999876
No 408
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.38 E-value=0.0019 Score=48.28 Aligned_cols=21 Identities=10% Similarity=0.207 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 25 ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 799999999999999999985
No 409
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.37 E-value=0.0021 Score=57.56 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=25.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHhC----CceEEE
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELTQ----REVEYI 75 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~lg----~p~~~v 75 (162)
..++|+|.+|+||||+++.+++.++ +++..+
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 3588999999999999999999876 665444
No 410
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.37 E-value=0.0018 Score=47.30 Aligned_cols=21 Identities=19% Similarity=0.445 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999884
No 411
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.002 Score=48.05 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999753
No 412
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.36 E-value=0.002 Score=47.97 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998753
No 413
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.36 E-value=0.0019 Score=48.60 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++|+|+||+|||+|.++++..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999854
No 414
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.002 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999754
No 415
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.36 E-value=0.0029 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=23.4
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+-+.|+||+|+|||||++.++....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 367899999999999999999986554
No 416
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.36 E-value=0.002 Score=47.54 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998853
No 417
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.35 E-value=0.0022 Score=52.51 Aligned_cols=26 Identities=15% Similarity=0.059 Sum_probs=22.5
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
.|+-+.|+||+|+|||||++.++ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 36678999999999999999999 543
No 418
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.35 E-value=0.0024 Score=55.54 Aligned_cols=34 Identities=9% Similarity=0.122 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCCc--EEEEcCCCchHHHHHHHHHHH
Q psy4122 34 LRWILQKDNMSQD--VFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 34 L~~i~~~~~~g~~--vlL~GppG~GKT~La~~lA~~ 67 (162)
+..+-.....|.. +.|+||+|+|||||++.++..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5666667777887 999999999999999999865
No 419
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.34 E-value=0.0021 Score=47.22 Aligned_cols=23 Identities=9% Similarity=-0.094 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.++++|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999998776544
No 420
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.34 E-value=0.0048 Score=48.16 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=26.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh--CCceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT--QREVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l--g~p~~~v~~~ 78 (162)
.+++.|.+|+||||++..+|..+ |..+..+.+.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47888999999999999999765 6665555554
No 421
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.34 E-value=0.0019 Score=55.37 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=25.1
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
....|+-+.|+||.|||||||.+.+|...
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34468889999999999999999999765
No 422
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=96.34 E-value=0.0049 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.+.|+|+||||||||.+++..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999864
No 423
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.33 E-value=0.0024 Score=48.68 Aligned_cols=33 Identities=9% Similarity=-0.032 Sum_probs=25.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
.-+.+.|++|+||||+++.++..+ |..+-.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 357899999999999999988753 445544444
No 424
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.33 E-value=0.0021 Score=47.68 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 425
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.32 E-value=0.0031 Score=54.70 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=28.0
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
+++..+-.|+.++|+||+|||||+|+..+|+..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 444556678999999999999999999999765
No 426
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.32 E-value=0.0022 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 427
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.32 E-value=0.002 Score=48.14 Aligned_cols=21 Identities=19% Similarity=0.499 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998874
No 428
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.32 E-value=0.0022 Score=47.68 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 429
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0022 Score=47.47 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 699999999999999999986
No 430
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.32 E-value=0.0024 Score=51.01 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|.-+.+.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999766
No 431
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0022 Score=47.63 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.++++|++|+|||+|++.+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998654
No 432
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.32 E-value=0.002 Score=51.33 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHhcC----CCCcEEEEcCCCchHHHHHHHHHH
Q psy4122 26 LTQDWLSHLRWILQKDN----MSQDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~----~g~~vlL~GppG~GKT~La~~lA~ 66 (162)
++....+.+..++.... ..-.++++|++|+|||+|++.+..
T Consensus 17 l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 17 FAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 34444445444443222 123689999999999999999874
No 433
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.29 E-value=0.0023 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998753
No 434
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.29 E-value=0.0066 Score=51.56 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHH------------HHhcCCCCcEEEEcCCCchHHHHH
Q psy4122 26 LTQDWLSHLRWI------------LQKDNMSQDVFLIGKPGSLRRSLA 61 (162)
Q Consensus 26 ~~~~~~~~L~~i------------~~~~~~g~~vlL~GppG~GKT~La 61 (162)
+++..++.|+.+ +.....|+++++.+|+|+|||...
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 456666666432 233446889999999999999743
No 435
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.29 E-value=0.0023 Score=47.55 Aligned_cols=22 Identities=9% Similarity=0.279 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998864
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.29 E-value=0.0022 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
No 437
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.27 E-value=0.0019 Score=52.33 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.9
Q ss_pred hcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 40 KDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 40 ~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
... |+.+.|+||.|||||||.+.++...
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 7889999999999999999999876
No 438
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.25 E-value=0.0022 Score=47.54 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=19.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998864
No 439
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.25 E-value=0.0024 Score=47.92 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6999999999999999998854
No 440
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.25 E-value=0.0022 Score=47.17 Aligned_cols=22 Identities=5% Similarity=0.214 Sum_probs=19.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
..++++|++|+|||+|++++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999998874
No 441
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.24 E-value=0.0019 Score=52.99 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=23.7
Q ss_pred CCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 42 NMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 42 ~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..|+.+.|+||.|||||||.+.++...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 356778999999999999999998765
No 442
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.24 E-value=0.0033 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.+.|+||+|+|||||.+.++..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7899999999999999999974
No 443
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.24 E-value=0.0026 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..++++|++|+|||+|+.++....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998643
No 444
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.24 E-value=0.0042 Score=50.70 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.+.|+|+||+|||||.+++..
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 689999999999999999874
No 445
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.24 E-value=0.0026 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.629 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.|+++|++|+|||+|++.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999884
No 446
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.23 E-value=0.0024 Score=47.19 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=19.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
-.++++|++|+|||+|++++..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999873
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.21 E-value=0.0031 Score=49.48 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
|.-+.++|++|+||||.++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999766
No 448
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.21 E-value=0.0027 Score=48.43 Aligned_cols=23 Identities=9% Similarity=0.199 Sum_probs=20.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~ 67 (162)
..++++|++|+|||+|++.++..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 449
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.21 E-value=0.0029 Score=51.73 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=23.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhCC
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQR 70 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg~ 70 (162)
++-+.|+||+|||||||.+.++.....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccc
Confidence 567899999999999999999876543
No 450
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.19 E-value=0.0028 Score=47.00 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 451
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.18 E-value=0.0054 Score=47.24 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=28.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHh---CCceEEEEeccCCChhh
Q psy4122 47 VFLIGKPGSLRRSLAMSYLELT---QREVEYICLSRDTTEAD 85 (162)
Q Consensus 47 vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~~~~~~~d 85 (162)
+.+.|+-||||||.++.+++.+ |.++....-...+...+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~ 44 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGE 44 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHH
Confidence 5688999999999999999765 67765554444443333
No 452
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.18 E-value=0.0028 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++++...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998854
No 453
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.18 E-value=0.002 Score=48.55 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=18.5
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA 65 (162)
.++++|++|||||+|++.++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
No 454
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.18 E-value=0.0036 Score=54.75 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhcC-CCCcEEEEcCCCchHHHHHHHHHH
Q psy4122 28 QDWLSHLRWILQKDN-MSQDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 28 ~~~~~~L~~i~~~~~-~g~~vlL~GppG~GKT~La~~lA~ 66 (162)
+.-++.|...+.... ....+.++|++|+|||+||.++++
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 455666666654321 234689999999999999999874
No 455
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.17 E-value=0.0025 Score=50.56 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHHhC----CceEE
Q psy4122 44 SQDVFLIGKPGSLRRSLAMSYLELTQ----REVEY 74 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La~~lA~~lg----~p~~~ 74 (162)
|.-+.+.|++||||||+++.+++.++ .++..
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 45688889999999999999997654 46554
No 456
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.17 E-value=0.0015 Score=47.84 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=9.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999998874
No 457
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.16 E-value=0.0022 Score=47.18 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=19.4
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999874
No 458
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.15 E-value=0.0027 Score=47.78 Aligned_cols=21 Identities=24% Similarity=0.554 Sum_probs=19.2
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++++..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999998873
No 459
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=96.15 E-value=0.0028 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
-.++++|++|+|||+|++.+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998873
No 460
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.15 E-value=0.0083 Score=51.22 Aligned_cols=18 Identities=17% Similarity=0.097 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q psy4122 44 SQDVFLIGKPGSLRRSLA 61 (162)
Q Consensus 44 g~~vlL~GppG~GKT~La 61 (162)
|+++++.||+|+|||..+
T Consensus 2 g~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CCEEEEECCTTSCTTTTH
T ss_pred CCEEEEEcCCCCCHHHHH
Confidence 679999999999999876
No 461
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.14 E-value=0.003 Score=47.69 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999998853
No 462
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.13 E-value=0.0028 Score=49.25 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.|+|+|++|+|||+|++.+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999998753
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.13 E-value=0.0031 Score=55.29 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHHHHHH-hcCCCCcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEe
Q psy4122 33 HLRWILQ-KDNMSQDVFLIGKPGSLRRSLAMSYLELT---QREVEYICL 77 (162)
Q Consensus 33 ~L~~i~~-~~~~g~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~ 77 (162)
.+.+++. .+..|.-++|.||+|||||+|+++++... |.++.++..
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 3455544 34477789999999999999999999654 445544544
No 464
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.13 E-value=0.0043 Score=53.92 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
..++++||+|+||||++..+|..+ |..+..+.+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 357889999999999999998655 6666655553
No 465
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.12 E-value=0.0029 Score=46.79 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=19.0
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA 65 (162)
..|+++|++|||||+|++++.
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~ 38 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVK 38 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 369999999999999999876
No 466
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.11 E-value=0.003 Score=47.76 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.|+++|++|+|||+|++.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999998874
No 467
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=96.11 E-value=0.0031 Score=47.35 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998853
No 468
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.10 E-value=0.0024 Score=48.20 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=18.7
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA 65 (162)
.++++|++|+|||+|++++.
T Consensus 27 ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 69999999999999999886
No 469
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.09 E-value=0.0062 Score=56.55 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHH
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~ 67 (162)
++++-.+.+..++. +...++.||||||||+++..++..
T Consensus 357 Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp CCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 56666666666553 446899999999999988776654
No 470
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.09 E-value=0.0029 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999998863
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.08 E-value=0.0035 Score=47.28 Aligned_cols=21 Identities=10% Similarity=0.289 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 599999999999999999874
No 472
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.08 E-value=0.0032 Score=51.53 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=18.4
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA 65 (162)
-|.++|.||+|||||.+++.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 58999999999999999876
No 473
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.06 E-value=0.0025 Score=49.72 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHhCCce
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELTQREV 72 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~lg~p~ 72 (162)
.|.-+.|+|+.|+||||+++.++.. +..+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 3556899999999999999999987 4443
No 474
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.06 E-value=0.0032 Score=47.96 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.3
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++++|++|+|||+|++.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999873
No 475
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.06 E-value=0.0044 Score=48.85 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=24.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHHhCCceE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELTQREVE 73 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~lg~p~~ 73 (162)
.+-|+|..||||||+++.+++ +|.|+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi 37 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV 37 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE
Confidence 478999999999999999998 898854
No 476
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.06 E-value=0.0031 Score=47.22 Aligned_cols=20 Identities=5% Similarity=0.253 Sum_probs=18.7
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA 65 (162)
.++++|++|+|||+|++.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999885
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0036 Score=47.13 Aligned_cols=22 Identities=9% Similarity=0.206 Sum_probs=19.8
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.02 E-value=0.0026 Score=47.07 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
.++++|++|+|||+|++.+....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999887543
No 479
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.02 E-value=0.0038 Score=54.98 Aligned_cols=33 Identities=15% Similarity=0.074 Sum_probs=26.9
Q ss_pred HHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 36 WILQKDNMSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 36 ~i~~~~~~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
+.+..+..|+.++|+||+|+|||+|++.++...
T Consensus 143 D~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 334556678899999999999999999887554
No 480
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.02 E-value=0.0014 Score=54.43 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=21.7
Q ss_pred CCCcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 43 MSQDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 43 ~g~~vlL~GppG~GKT~La~~lA~~l 68 (162)
.|+.+.|+||+|+|||||++.++...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 56789999999999999999987554
No 481
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0038 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.|+|+|++|+|||+|++++..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998873
No 482
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.98 E-value=0.0041 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l 68 (162)
..+.|+|+||+|||||.+.++..+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368899999999999999999754
No 483
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.98 E-value=0.0037 Score=55.59 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhc-CCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 28 QDWLSHLRWILQKD-NMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 28 ~~~~~~L~~i~~~~-~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
+++.+.++.-.... ..+..++|+|++||||||+++.+++.++
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 55666666554211 2345689999999999999999998764
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.97 E-value=0.0038 Score=53.15 Aligned_cols=29 Identities=21% Similarity=0.098 Sum_probs=24.9
Q ss_pred cCCCCcEEEEcCCCchHHHHHHHHHHHhC
Q psy4122 41 DNMSQDVFLIGKPGSLRRSLAMSYLELTQ 69 (162)
Q Consensus 41 ~~~g~~vlL~GppG~GKT~La~~lA~~lg 69 (162)
...|+-+.|+||.|||||||.+.++....
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 34578899999999999999999997654
No 485
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.95 E-value=0.0045 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.229 Sum_probs=20.5
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT 68 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l 68 (162)
-.+++||.|+|||++.+++...+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998766
No 486
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.95 E-value=0.03 Score=53.09 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHH
Q psy4122 25 ALTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMS 63 (162)
Q Consensus 25 ~~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~ 63 (162)
++++.=.+.+..++. |+++++.+|||+|||..+..
T Consensus 39 ~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~ 73 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEY 73 (997)
T ss_dssp CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHH
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHH
Confidence 356655555655554 78999999999999976543
No 487
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.94 E-value=0.0032 Score=48.38 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.|+++|++|+|||+|++.+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999998863
No 488
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.93 E-value=0.0075 Score=53.32 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=27.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
.++++|+||+||||++..+|..+ |..+..+.+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 58899999999999999999655 6776666663
No 489
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.92 E-value=0.0038 Score=49.00 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
..|+|+|++|+|||+|++.+..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 3699999999999999999874
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.0044 Score=47.38 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.++++|++|+|||+|++.+...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
No 491
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.89 E-value=0.0039 Score=53.99 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=26.6
Q ss_pred CcEEEEcCCCchHHHHHHHHHHHh---CCceEEEEec
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLELT---QREVEYICLS 78 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~~~ 78 (162)
..++++|++|+||||++..+|..+ |..+..+.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 368999999999999999999755 4565555543
No 492
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.88 E-value=0.0042 Score=51.60 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=24.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHHh---CCceEEEE
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLELT---QREVEYIC 76 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~l---g~p~~~v~ 76 (162)
-++++|++|+||||++..+|..+ |..+..+.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 58899999999999999999655 45544443
No 493
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.88 E-value=0.0048 Score=47.13 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=20.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~~ 67 (162)
-.++++|++|||||+|++.+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36999999999999999998753
No 494
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.88 E-value=0.0027 Score=46.87 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=18.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA 65 (162)
-.++++|++|+|||+|++++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999874
No 495
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.87 E-value=0.018 Score=51.84 Aligned_cols=23 Identities=9% Similarity=-0.062 Sum_probs=19.3
Q ss_pred HHhcCCCCcEEEEcCCCchHHHH
Q psy4122 38 LQKDNMSQDVFLIGKPGSLRRSL 60 (162)
Q Consensus 38 ~~~~~~g~~vlL~GppG~GKT~L 60 (162)
+..+..++++++.+|||+|||..
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~ 202 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKR 202 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTT
T ss_pred HHHHhcCCeEEEEcCCCCCHHHH
Confidence 44555689999999999999985
No 496
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.86 E-value=0.033 Score=50.97 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHH
Q psy4122 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYL 65 (162)
Q Consensus 26 ~~~~~~~~L~~i~~~~~~g~~vlL~GppG~GKT~La~~lA 65 (162)
++|-=.+.+..++ .++++++.+|+|+|||..+-..+
T Consensus 249 l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i 284 (797)
T 4a2q_A 249 ARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILIC 284 (797)
T ss_dssp CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHH
Confidence 4444445555554 36899999999999998766555
No 497
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.86 E-value=0.0045 Score=49.47 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=19.0
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
.++|+|+||||||+|.+++..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 589999999999999999863
No 498
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.86 E-value=0.0089 Score=47.50 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=19.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLEL 67 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~~ 67 (162)
.|.++|.||+|||||++++...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred eEEEEeCCCCCHHHHHHHHHCC
Confidence 4899999999999999998743
No 499
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.86 E-value=0.0046 Score=46.24 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.0
Q ss_pred CcEEEEcCCCchHHHHHHHHHH
Q psy4122 45 QDVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 45 ~~vlL~GppG~GKT~La~~lA~ 66 (162)
-.++++|++|+|||+|++.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999986654
No 500
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.85 E-value=0.0049 Score=48.08 Aligned_cols=21 Identities=14% Similarity=0.352 Sum_probs=19.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q psy4122 46 DVFLIGKPGSLRRSLAMSYLE 66 (162)
Q Consensus 46 ~vlL~GppG~GKT~La~~lA~ 66 (162)
-|+|+|++|||||+|+.++..
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 389999999999999999874
Done!