RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4122
(162 letters)
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 114 bits (288), Expect = 1e-33
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Query: 46 DVFLIGKPGSLRRSLAMSYLE-LTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104
V L+G PG+ + LA L+ R V Y+ L+RDTTE D+K RR I G A + D
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60
Query: 105 VRAAIEGRVLILEGIEKAERNVLPVLNNLLENREMHLEDGRFLVSASTYD 154
VRAA EG + +L+ I +A +VL L +LL+ R + L +G LV A+
Sbjct: 61 VRAAREGEIAVLDEINRANPDVLNSLLSLLDERRLLLPEGGELVKAAPDG 110
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 34.2 bits (78), Expect = 0.022
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 26 LTQDWLSHLRWILQKDNMSQDVFLIGKPGSLRRSLAMSYL-ELTQREVEYICLSRDTTEA 84
T + L L ++ ++L G GS + L E QR VE R+ T+A
Sbjct: 131 GTLETLDRLAKEAVDLKIAVPIYLEGGRGSGKSFLISELCDEGGQRIVE--IHLREITDA 188
Query: 85 DIKQRREIVN--GTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLENREM 139
+ G + + A + G ++ + I+KA VL L LLE R +
Sbjct: 189 KVLIGTYTSPKPGDFEWMKGVLIEAVVSGDWILFKRIDKAPHGVLSYLLTLLEKRRL 245
>gnl|CDD|236326 PRK08655, PRK08655, prephenate dehydrogenase; Provisional.
Length = 437
Score = 31.9 bits (73), Expect = 0.11
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 109 IEGRVLILEGIEKAERNVLPVLNNLLENREMHLEDGRFLVSASTYDKLLQV 159
++G+V+IL EK + N LE + + S +D+++ V
Sbjct: 126 LKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVI----VTSPEEHDRIMSV 172
>gnl|CDD|107157 PHA02244, PHA02244, ATPase-like protein.
Length = 383
Score = 28.2 bits (62), Expect = 2.4
Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 18 LFSVNTDALTQDWLSHLRW--ILQKDNMSQDVFLIGKPGSLRRSLAMSYLELTQREVEYI 75
+ ++T + + H I + N + VFL G GS + +A E ++++
Sbjct: 91 ISGIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL--DLDFY 148
Query: 76 CLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNVLPVLNNLLE 135
++ E ++K ++ +++ A +G + ++ I+ + L ++N+ +
Sbjct: 149 FMNAIMDEFELKG---FIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIA 205
Query: 136 NREMHLEDGR 145
N+ D R
Sbjct: 206 NKFFDFADER 215
>gnl|CDD|235718 PRK06154, PRK06154, hypothetical protein; Provisional.
Length = 565
Score = 27.9 bits (62), Expect = 3.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 120 EKAERNVLPVLNNLLENREMHLEDGRFLVSASTY 153
E A R +P+L LL N M D VS + Y
Sbjct: 469 ETAVRERIPILTILLNNFSMGGYDKVMPVSTTKY 502
>gnl|CDD|132998 cd00897, UGPase_euk, Eukaryotic UGPase catalyses the synthesis of
UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase)
catalyzes the reversible production of UDP-Glucose and
pyrophosphate (PPi) from Glucose-1-phosphate and UTP.
UDP-glucose plays pivotal roles in galactose
utilization, in glycogen synthesis, and in the synthesis
of the carbohydrate moieties of glycolipids,
glycoproteins, and proteoglycans. UGPase is found in
both prokaryotes and eukaryotes. Interestingly, while
the prokaryotic and eukaryotic forms of UGPase catalyze
the same reaction, they share low sequence similarity.
This family consists of mainly eukaryotic
UTP-glucose-1-phosphate uridylyltransferases.
Length = 300
Score = 27.2 bits (61), Expect = 4.4
Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 41/118 (34%)
Query: 67 LTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNV 126
+ + EYI D T AD+K GT I Y EG++ +LE + + +V
Sbjct: 160 MVDNKAEYIMEVTDKTRADVK------GGTLIQY---------EGKLRLLEIAQVPKEHV 204
Query: 127 --------------------LPVLNNLLENREMHLEDGRFLVSASTYD---KLLQVET 161
L + ++E + LE +V+ T D ++Q+ET
Sbjct: 205 DEFKSIKKFKIFNTNNLWVNLKAVKRVVEENALDLE---IIVNPKTVDGGLNVIQLET 259
>gnl|CDD|224270 COG1351, THY1, Predicted alternative thymidylate synthase
[Nucleotide transport and metabolism].
Length = 273
Score = 27.0 bits (60), Expect = 5.0
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 63 SYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQ--SAVRAAIEGRVLILEGIE 120
SY E +QR Y+ + ++ A + D + +L+ +E
Sbjct: 101 SYSEKSQR---YVLDG----DEFYVPFEPLLEDRAAFNDLCRAVDDLYSSKLEKVLDLLE 153
Query: 121 KAERNVLPVLNNLLENREMHLEDGRFLVSASTY 153
KA + LL + ED R+++ +T
Sbjct: 154 KAYERSYELYKELLR-SGIAREDARYVLPNATE 185
>gnl|CDD|185293 PRK15395, PRK15395, methyl-galactoside ABC transporter
galactose-binding periplasmic protein MglB; Provisional.
Length = 330
Score = 27.0 bits (60), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 24 DALTQDWLSHLRWILQKDNMSQDVFLIGKPG 54
D + + W ++ W L KD Q V L G+PG
Sbjct: 143 DLIAKHWKANPAWDLNKDGKIQYVLLKGEPG 173
>gnl|CDD|180525 PRK06310, PRK06310, DNA polymerase III subunit epsilon; Validated.
Length = 250
Score = 26.3 bits (58), Expect = 7.1
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 62 MSYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSAVRAAIE 110
MS L+ + E++CL +TT D+K+ R I+ AI + V ++E
Sbjct: 1 MSLLK----DTEFVCLDCETTGLDVKKDR-IIEFAAIRFTFDEVIDSVE 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.375
Gapped
Lambda K H
0.267 0.0854 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,206,873
Number of extensions: 754214
Number of successful extensions: 673
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 27
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.7 bits)