RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4122
         (162 letters)



>d1pz1a_ c.1.7.1 (A:) Putative oxidoreductase YhdN {Bacillus
           subtilis [TaxId: 1423]}
          Length = 333

 Score = 28.2 bits (61), Expect = 0.42
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 34  LRWILQKDNMSQDVFLIG--KPGSLRRSLAMSYLELTQREVEYI 75
           +RWIL +      + L G  KPG L     ++   L   + + I
Sbjct: 265 VRWILDQPGAD--IALWGARKPGQLEALSEITGWTLNSEDQKDI 306


>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
          Length = 346

 Score = 27.2 bits (59), Expect = 1.0
 Identities = 8/44 (18%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 34  LRWILQKDNMSQDVFLIG--KPGSLRRSLAMSYLELTQREVEYI 75
           L ++ ++  ++    L+G      L+ ++   +LEL++  +  I
Sbjct: 293 LAFVRRQPFVA--STLLGATTMDQLKTNIESLHLELSEDVLAEI 334


>d1ur3m_ c.1.7.1 (M:) Hypothetical oxidoreductase YdhF {Escherichia
           coli [TaxId: 562]}
          Length = 298

 Score = 27.0 bits (58), Expect = 1.2
 Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 34  LRWILQKDNMSQDVFLIG--KPGSLRRSLAMSYLELTQREVEYI 75
             W+L+  +    + +IG  K   +R ++    L++T+++   I
Sbjct: 247 NAWVLRLPSQP--LPIIGSGKIERVRAAVEAETLKMTRQQWFRI 288


>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 309

 Score = 26.7 bits (58), Expect = 1.3
 Identities = 14/122 (11%), Positives = 43/122 (35%), Gaps = 9/122 (7%)

Query: 33  HLRWILQKDNMSQD-----VFLIGKPGSLRRSLAMSYLELTQREVEYICLSRDTTEADIK 87
             R +  ++ +  +     + +IG  G  +  +A    +L       +  ++ T    + 
Sbjct: 33  RWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 92

Query: 88  QRREIVNGTAIYYDQSAVRAAIEGRVLILEGIEKAERNV----LPVLNNLLENREMHLED 143
           +  + +          A+ A  +  ++ ++ I+K  +        V    ++   + L +
Sbjct: 93  KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVE 152

Query: 144 GR 145
           G 
Sbjct: 153 GS 154


>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 111

 Score = 24.5 bits (52), Expect = 4.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 16  IYLFSVNTDALTQDWLSHLRWILQ 39
           IY F+  +    ++W+  L++ILQ
Sbjct: 88  IYQFTAASPKDAEEWVQQLKFILQ 111


>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 315

 Score = 24.7 bits (53), Expect = 5.8
 Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 48  FLIGKPGSLRRSLAM---SYLELTQREVEYICLSRDTTEADIKQRREIVNGTAIYYDQSA 104
             +G  G  +  LA    + L  T+  +  I ++    +  + +      G   Y +   
Sbjct: 57  LFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQ 116

Query: 105 VRAAIEGR---VLILEGIEKAERNVLPVLNNLLENREMHLEDGRF 146
           +  A+  R   V++ + IEKA  +V  +L  +L++  +    GR 
Sbjct: 117 LTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRT 161


>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 26

 Score = 22.3 bits (47), Expect = 7.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 123 ERNVLPVLNNLLENREMHL 141
           E N++P + N+L+N ++ L
Sbjct: 1   EENIIPYITNVLQNPDLAL 19


>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 127

 Score = 24.1 bits (51), Expect = 7.7
 Identities = 4/26 (15%), Positives = 13/26 (50%)

Query: 16  IYLFSVNTDALTQDWLSHLRWILQKD 41
           +Y  S  +    ++W+  ++  + +D
Sbjct: 97  VYRISAPSPEEKEEWMKSIKASISRD 122


>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 209

 Score = 24.1 bits (51), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 16  IYLFSVNTDALTQDWLSHLRWILQK 40
           IY F+  +    ++W+  L++ILQ 
Sbjct: 183 IYQFTAASPKDAEEWVQQLKFILQD 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.375 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 567,410
Number of extensions: 24206
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 14
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)