BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4124
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q21735|NTF2_CAEEL Probable nuclear transport factor 2 OS=Caenorhabditis elegans
GN=ran-4 PE=3 SV=1
Length = 133
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 37/131 (28%)
Query: 5 LNPAYEAIGKGFVQQYYALFD--DPAQRP-NLINMYNTETSFMTFEGIQLQGAVKIMEKF 61
NP YE++ K F+Q YY+ FD D R L ++Y+ E S+MTFEG Q +G I++KF
Sbjct: 3 FNPDYESVAKAFIQHYYSKFDVGDGMSRAQGLSDLYDPENSYMTFEGQQAKGRDGILQKF 62
Query: 62 N---------------------------------CDDDPPHAYSQIFVLKPLG-ASFYCQ 87
D+DP + +SQ+F+L+P S++
Sbjct: 63 TTLGFTKIQRAITVIDSQPLYDGSIQVMVLGQLKTDEDPINPFSQVFILRPNNQGSYFIG 122
Query: 88 HDIFRLGIHDT 98
++IFRL +H+
Sbjct: 123 NEIFRLDLHNN 133
>sp|O42242|NTF2_XENLA Nuclear transport factor 2 OS=Xenopus laevis GN=ntf2 PE=2 SV=1
Length = 127
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 36/125 (28%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFN--- 62
NP +E IG F+QQYY FD A R L +Y T+ S +T+EG Q G I+EK +
Sbjct: 4 NPIWEQIGASFIQQYYQTFD--ADRTQLAVIY-TDASCLTWEGQQYHGKAAIVEKLSLLP 60
Query: 63 ------------------------------CDDDPPHAYSQIFVLKPLGASFYCQHDIFR 92
DDDP + Q+F+LK + ++ C +D+FR
Sbjct: 61 FQKIQHSITSQDHQPTPDSCIISMVVGQLKADDDPIMGFHQVFLLKNIQDAWVCTNDMFR 120
Query: 93 LGIHD 97
L +H+
Sbjct: 121 LALHN 125
>sp|Q5R8G4|NTF2_PONAB Nuclear transport factor 2 OS=Pongo abelii GN=NUTF2 PE=2 SV=1
Length = 127
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 36/125 (28%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFN--- 62
P +E IG F+Q YY LFD+ R L +Y + S +T+EG Q QG I+EK +
Sbjct: 4 KPIWEQIGSSFIQHYYQLFDN--DRTQLGAIY-IDASCLTWEGQQFQGKAAIVEKLSSLP 60
Query: 63 ------------------------------CDDDPPHAYSQIFVLKPLGASFYCQHDIFR 92
D+DP + Q+F+LK + ++ C +D+FR
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFR 120
Query: 93 LGIHD 97
L +HD
Sbjct: 121 LALHD 125
>sp|P61972|NTF2_RAT Nuclear transport factor 2 OS=Rattus norvegicus GN=Nutf2 PE=1 SV=1
Length = 127
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 36/125 (28%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFN--- 62
P +E IG F+Q YY LFD+ R L +Y + S +T+EG Q QG I+EK +
Sbjct: 4 KPIWEQIGSSFIQHYYQLFDN--DRTQLGAIY-IDASCLTWEGQQFQGKAAIVEKLSSLP 60
Query: 63 ------------------------------CDDDPPHAYSQIFVLKPLGASFYCQHDIFR 92
D+DP + Q+F+LK + ++ C +D+FR
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFR 120
Query: 93 LGIHD 97
L +H+
Sbjct: 121 LALHN 125
>sp|P61971|NTF2_MOUSE Nuclear transport factor 2 OS=Mus musculus GN=Nutf2 PE=2 SV=1
Length = 127
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 36/125 (28%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFN--- 62
P +E IG F+Q YY LFD+ R L +Y + S +T+EG Q QG I+EK +
Sbjct: 4 KPIWEQIGSSFIQHYYQLFDN--DRTQLGAIY-IDASCLTWEGQQFQGKAAIVEKLSSLP 60
Query: 63 ------------------------------CDDDPPHAYSQIFVLKPLGASFYCQHDIFR 92
D+DP + Q+F+LK + ++ C +D+FR
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFR 120
Query: 93 LGIHD 97
L +H+
Sbjct: 121 LALHN 125
>sp|P61970|NTF2_HUMAN Nuclear transport factor 2 OS=Homo sapiens GN=NUTF2 PE=1 SV=1
Length = 127
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 36/125 (28%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFN--- 62
P +E IG F+Q YY LFD+ R L +Y + S +T+EG Q QG I+EK +
Sbjct: 4 KPIWEQIGSSFIQHYYQLFDN--DRTQLGAIY-IDASCLTWEGQQFQGKAAIVEKLSSLP 60
Query: 63 ------------------------------CDDDPPHAYSQIFVLKPLGASFYCQHDIFR 92
D+DP + Q+F+LK + ++ C +D+FR
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFR 120
Query: 93 LGIHD 97
L +H+
Sbjct: 121 LALHN 125
>sp|Q32KP9|NTF2_BOVIN Nuclear transport factor 2 OS=Bos taurus GN=NUTF2 PE=2 SV=1
Length = 127
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 36/125 (28%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFN--- 62
P +E IG F+Q YY LFD+ R L +Y + S +T+EG Q QG I+EK +
Sbjct: 4 KPIWEQIGSSFIQHYYQLFDN--DRTQLGAIY-IDASCLTWEGQQFQGKAAIVEKLSSLP 60
Query: 63 ------------------------------CDDDPPHAYSQIFVLKPLGASFYCQHDIFR 92
D+DP + Q+F+LK + ++ C +D+FR
Sbjct: 61 FQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFR 120
Query: 93 LGIHD 97
L +H+
Sbjct: 121 LALHN 125
>sp|Q9XJ54|NTF2_ORYSJ Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2
PE=2 SV=1
Length = 122
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 38/119 (31%)
Query: 10 EAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF-------- 61
+A+ K FV+ YY FD RP L+++Y + S +TFEG Q GA I K
Sbjct: 4 DAVAKAFVEHYYRTFD--TNRPALVSLYQ-DGSMLTFEGQQFLGAAAIAGKLGSLPFAQC 60
Query: 62 -------NCD--------------------DDPPHAYSQIFVLKPLGASFYCQHDIFRL 93
+C D+ P +SQ+F L P G +FY Q+D+FRL
Sbjct: 61 HHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPAGGNFYVQNDMFRL 119
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 38/121 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF------- 61
+ ++ + F + YY FD + R L N+Y E S +TFE QLQGA I+EK
Sbjct: 5 FSSLAQQFTEFYYNQFD--SDRTQLGNLYR-EQSMLTFETTQLQGAKDIVEKLVSLPFQK 61
Query: 62 ------NCDDDP----------------------PHAYSQIFVLKPLGASFYCQHDIFRL 93
D P P +SQ+F L P G+S+Y +DIFRL
Sbjct: 62 VAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFRL 121
Query: 94 G 94
Sbjct: 122 N 122
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 38/121 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFNC----- 63
+ A+ + F + YY FD + R L N+Y E S +TFE QLQGA I+EK
Sbjct: 5 FNALAQQFTEFYYNQFD--SDRSQLGNLYRDE-SMLTFETSQLQGAKSIVEKLVSLPFQK 61
Query: 64 ------------------------------DDDPPHAYSQIFVLKPLGASFYCQHDIFRL 93
D+ P +SQ+F L P G S+Y +DIFRL
Sbjct: 62 VAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 121
Query: 94 G 94
Sbjct: 122 N 122
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 38/121 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF------- 61
+ + + F Q YY FD R L N+Y E S +TFE QLQGA I+EK
Sbjct: 5 FNTLAQNFTQFYYNQFD--TDRSQLGNLYRNE-SMLTFETSQLQGAKDIVEKLVSLPFQK 61
Query: 62 ------NCDDDP----------------------PHAYSQIFVLKPLGASFYCQHDIFRL 93
D P P +SQ+F L P G S+Y +DIFRL
Sbjct: 62 VQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 121
Query: 94 G 94
Sbjct: 122 N 122
>sp|Q6CC82|NTF2_YARLI Nuclear transport factor 2 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=NTF2 PE=3 SV=1
Length = 123
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 38/120 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEK-------- 60
+ + K F + YY FD R L N+Y + S +TF G Q QGA I+EK
Sbjct: 5 FNTLAKQFCEFYYQTFD--TDRSQLGNLYR-DHSMLTFTGTQHQGAQAIVEKLVGLPFGQ 61
Query: 61 ---------------------------FNCDDDPPHAYSQIFVLKPLGASFYCQHDIFRL 93
D D P Y+Q+F L P G+S+Y +DIFRL
Sbjct: 62 VRHKISDIDAQPASAQGGDVIVLVTGELCVDGDNPLPYAQVFHLIPDGSSYYVFNDIFRL 121
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 38/121 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF------- 61
+ A+ + F + YY FD R L N+Y + S +TFE QLQGA I+EK
Sbjct: 5 FSALAQQFTEFYYNQFD--TDRSQLGNLYR-DQSMLTFETSQLQGAKDIVEKLVSLPFQK 61
Query: 62 ---------------NCD-----------DDPPHA--YSQIFVLKPLGASFYCQHDIFRL 93
N D DD +A +SQ+F L P G S+Y +DIFRL
Sbjct: 62 VQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNSYYVFNDIFRL 121
Query: 94 G 94
Sbjct: 122 N 122
>sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2
SV=1
Length = 126
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 41/127 (32%)
Query: 3 SQLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF- 61
SQ++P +A+ K FV+ YY+ FD R L +Y E S +TFEG ++QG I+ K
Sbjct: 2 SQMDP--DAVSKAFVEHYYSTFD--TNRVGLAGLYQ-EASMLTFEGQKIQGVQSIVAKLT 56
Query: 62 --------------NCDDDPP------------------HA--YSQIFVLKPL-GASFYC 86
+C P HA +SQ+F L P SFY
Sbjct: 57 SLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYV 116
Query: 87 QHDIFRL 93
+DIFRL
Sbjct: 117 FNDIFRL 123
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 51/121 (42%), Gaps = 38/121 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF------- 61
+ + F YY FD + R L N+Y E S +TFE QLQGA I+EK
Sbjct: 5 FNTVASEFCNFYYQQFD--SDRTQLGNLYR-EQSMLTFETSQLQGAKDIVEKLVSLPFQK 61
Query: 62 ---------------NCD-----------DDPPHA--YSQIFVLKPLGASFYCQHDIFRL 93
N D DD +A YSQ+F L P G S+Y +DIFRL
Sbjct: 62 VAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFNDIFRL 121
Query: 94 G 94
Sbjct: 122 N 122
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 48/121 (39%), Gaps = 38/121 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF------- 61
+ A+ F YY FD + R L N+Y E S +TFE QLQGA I+EK
Sbjct: 5 FNAVATEFCNFYYNQFD--SDRSQLGNLYRNE-SMLTFETSQLQGARDIVEKLASLPFQK 61
Query: 62 ------NCDDDPPHA----------------------YSQIFVLKPLGASFYCQHDIFRL 93
D P A YSQ+F L P S+Y +DIFRL
Sbjct: 62 VAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDNGSYYVFNDIFRL 121
Query: 94 G 94
Sbjct: 122 N 122
>sp|Q10100|NTF2_SCHPO Nuclear transport factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ntf2 PE=3 SV=2
Length = 123
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 47/120 (39%), Gaps = 38/120 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF------- 61
Y A+ F Q YY FD + R L ++Y E S ++FEG QLQG I+EK
Sbjct: 4 YNALATQFTQFYYQTFD--SDRSQLSSLYREE-SMLSFEGAQLQGTKAIVEKLVSLPFQR 60
Query: 62 ------NCDDDP----------------------PHAYSQIFVLKPLGASFYCQHDIFRL 93
D P YSQ+F L ++Y +D+FRL
Sbjct: 61 VQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLVNNNGNYYVLNDLFRL 120
>sp|P87102|NTF2_NEUCR Nuclear transport factor 2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ntf-2 PE=2 SV=1
Length = 124
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFNC 63
+ AI FV YY+ FD + R NL +Y + S +TFEG Q GA I EK
Sbjct: 5 FTAIATQFVAHYYSTFD--SDRKNLAGLYR-DNSMLTFEGAQSLGAQGITEKLTS 56
>sp|Q86HW7|NTF2_DICDI Nuclear transport factor 2 OS=Dictyostelium discoideum GN=nutf2
PE=1 SV=1
Length = 127
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 5 LNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIME 59
++P +GK FV+ YY +FD + R L +Y +T+ +T+EG L GA I++
Sbjct: 4 VDPQVVGVGKQFVEHYYGIFD--SNRAGLTQIYQQQTT-LTWEGKFLSGADAIVK 55
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 39/121 (32%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFNC----- 63
+++I + FV YY FD R L +Y + S +TFE +QG I+EK
Sbjct: 4 FQSIAQQFVTFYYQTFD--GNRAGLAPLYR-DHSMLTFETSAIQGVAGIIEKLTSLPFQK 60
Query: 64 ------------------------------DDDPPHAYSQIFVLKPLGA-SFYCQHDIFR 92
++ P Y+Q F L P GA S++ +D+FR
Sbjct: 61 VQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFR 120
Query: 93 L 93
L
Sbjct: 121 L 121
>sp|Q8G310|MUTS_BRUSU DNA mismatch repair protein MutS OS=Brucella suis biovar 1 (strain
1330) GN=mutS PE=3 SV=1
Length = 910
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ IGK Q LFD A + + + +N T F E + GA+ +
Sbjct: 209 ELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGAIAYI 268
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 269 EKTQISERPP 278
>sp|B0CIQ5|MUTS_BRUSI DNA mismatch repair protein MutS OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=mutS PE=3 SV=1
Length = 910
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ IGK Q LFD A + + + +N T F E + GA+ +
Sbjct: 209 ELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGAIAYI 268
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 269 EKTQISERPP 278
>sp|A5VN83|MUTS_BRUO2 DNA mismatch repair protein MutS OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=mutS PE=3 SV=1
Length = 898
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ IGK Q LFD A + + + +N T F E + GA+ +
Sbjct: 197 ELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGAIAYI 256
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 257 EKTQISERPP 266
>sp|Q8YES6|MUTS_BRUME DNA mismatch repair protein MutS OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=mutS PE=3 SV=2
Length = 910
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ IGK Q LFD A + + + +N T F E + GA+ +
Sbjct: 209 ELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGAIAYI 268
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 269 EKTQISERPP 278
>sp|A9M792|MUTS_BRUC2 DNA mismatch repair protein MutS OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=mutS PE=3 SV=1
Length = 910
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ IGK Q LFD A + + + +N T F E + GA+ +
Sbjct: 209 ELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGAIAYI 268
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 269 EKTQISERPP 278
>sp|Q57FM9|MUTS_BRUAB DNA mismatch repair protein MutS OS=Brucella abortus biovar 1
(strain 9-941) GN=mutS PE=3 SV=1
Length = 910
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ IGK Q LFD A + + + +N T F E + GA+ +
Sbjct: 209 ELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGAIAYI 268
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 269 EKTQISERPP 278
>sp|Q2YNZ0|MUTS_BRUA2 DNA mismatch repair protein MutS OS=Brucella abortus (strain 2308)
GN=mutS PE=3 SV=1
Length = 910
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ IGK Q LFD A + + + +N T F E + GA+ +
Sbjct: 209 ELRPVFDLIGKAVTPQPATLFDSAAAQTRIQHYFNVATLDGFGQFSRPELSAISGAIAYI 268
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 269 EKTQISERPP 278
>sp|Q9NFL5|HCYF_APHCL Hemocyanin F chain OS=Aphonopelma californicum GN=HCF PE=2 SV=3
Length = 629
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 28 AQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFNCDDDPPHAYS 72
A+ PN+IN Y E++ GI +GAVK+ K+ D P YS
Sbjct: 400 AKAPNVINTYMKESTLEMSHGISFKGAVKV--KYQHLDHDPFTYS 442
>sp|A6WV86|MUTS_OCHA4 DNA mismatch repair protein MutS OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=mutS PE=3 SV=1
Length = 910
Score = 33.1 bits (74), Expect = 0.46, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 4 QLNPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTET-----SFMTFEGIQLQGAVKIM 58
+L P ++ +GK Q LFD A + +N T F E + GA+ +
Sbjct: 209 ELRPVFDLVGKAVTPQPATLFDSAAAETRIQRYFNVATLDGFGQFSRPELSAISGAIAYI 268
Query: 59 EKFNCDDDPP 68
EK + PP
Sbjct: 269 EKTQISERPP 278
>sp|P40417|ERKA_DROME Mitogen-activated protein kinase ERK-A OS=Drosophila melanogaster
GN=rl PE=1 SV=2
Length = 426
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 7 PAYEAIGKGFVQQYYALFDDP-AQRPNLINMYNTETSFMTFEGIQLQGAVKIMEK 60
P EA+ +++QYY D+P A+ P INM N + S + + + +K E+
Sbjct: 366 PVEEALAHPYLEQYYDPGDEPVAEVPFRINMENDDISRDALKSLIFEETLKFKER 420
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,426,328
Number of Sequences: 539616
Number of extensions: 1297523
Number of successful extensions: 2477
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2438
Number of HSP's gapped (non-prelim): 47
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)