RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4124
(99 letters)
>d1gy6a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 125
Score = 83.0 bits (205), Expect = 8e-23
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 36/124 (29%)
Query: 7 PAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF----- 61
P +E IG F+Q YY LFD+ R L +Y + S +T+EG Q QG I+EK
Sbjct: 3 PIWEQIGSSFIQHYYQLFDN--DRTQLGAIYI-DASCLTWEGQQFQGKAAIVEKLSSLPF 59
Query: 62 ----------------------------NCDDDPPHAYSQIFVLKPLGASFYCQHDIFRL 93
D+DP + Q+F+LK + ++ C +D+FRL
Sbjct: 60 QKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRL 119
Query: 94 GIHD 97
+H+
Sbjct: 120 ALHN 123
>d1zo2a1 d.17.4.2 (A:10-126) Nuclear transport factor-2 (NTF2)
{Cryptosporidium parvum [TaxId: 5807]}
Length = 117
Score = 73.3 bits (180), Expect = 5e-19
Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 37/119 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKFN------ 62
++ IGK FVQ YY F RP L +Y S +T+E Q QG I+ KFN
Sbjct: 1 FDQIGKQFVQHYYQTFQ--TNRPALGGLYG-PQSMLTWEDTQFQGQANIVNKFNSLNFQR 57
Query: 63 ---------------------------CDDDPPHAYSQIFVLKPLGA-SFYCQHDIFRL 93
DD P +SQ+F L P G F +D+FRL
Sbjct: 58 VQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQPLKFSQVFNLMPSGNGGFMIFNDLFRL 116
>d1gy7a_ d.17.4.2 (A:) Nuclear transport factor-2 (NTF2) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 121
Score = 71.8 bits (176), Expect = 2e-18
Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 38/120 (31%)
Query: 9 YEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF------- 61
+ + + F Q YY FD R L N+Y S +TFE QLQGA I+EK
Sbjct: 2 FNTLAQNFTQFYYNQFD--TDRSQLGNLYR-NESMLTFETSQLQGAKDIVEKLVSLPFQK 58
Query: 62 ------NCD----------------------DDPPHAYSQIFVLKPLGASFYCQHDIFRL 93
D + P +SQ+F L P G S+Y +DIFRL
Sbjct: 59 VQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRL 118
>d1jkga_ d.17.4.2 (A:) NTF2-related export protein 1 (p15) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 56.1 bits (135), Expect = 4e-12
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 44/123 (35%)
Query: 12 IGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF---------- 61
+ FV YY D +R L +Y T+ + + G + G + E F
Sbjct: 15 AAEEFVNVYYTTMDK--RRRLLSRLYM-GTATLVWNGNAVSGQESLSEFFEMLPSSEFQI 71
Query: 62 ---------------------------NCDDDPPHAYSQIFVLKPLGA----SFYCQHDI 90
+ + ++Q F+L + + D
Sbjct: 72 SVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDC 131
Query: 91 FRL 93
FR
Sbjct: 132 FRF 134
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 51.8 bits (124), Expect = 2e-10
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 9 YEAIGKGFVQQYYALFD--DPAQRPNLINMYNTETSFMTFEGIQLQGAVKIMEKF 61
I F ++ A D D + + ++N + F A ++ +
Sbjct: 2 QAQITATFTKKILAHLDDPDSNKLAQFVQLFNPNNCRIIFNATPFAQATVFLQMW 56
>d2qiya1 d.17.4.2 (A:3-141) UBP3-associated protein BRE5 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 139
Score = 47.4 bits (112), Expect = 1e-08
Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 57/138 (41%)
Query: 10 EAIGKGFVQQYYALFDDPAQRPNLINMYNTETSFMTFEGIQ---------------LQGA 54
+ I F+Q YY L Y T+ +T Q + G
Sbjct: 4 QDICFAFLQNYYERMRT--DPSKLAYFY-ASTAELTHTNYQSKSTNEKDDVLPTVKVTGR 60
Query: 55 VKIMEKFN-------------------------------------CDDDPPHAYSQIFVL 77
I + F+ P + + Q F+L
Sbjct: 61 ENINKFFSRNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTPVYKFCQTFIL 120
Query: 78 KPL--GASFYCQHDIFRL 93
P G++F +DI R
Sbjct: 121 LPSSNGSTFDITNDIIRF 138
>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating
protein, TAP {Human (Homo sapiens) [TaxId: 9606]}
Length = 186
Score = 31.7 bits (72), Expect = 0.006
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSF 43
+++ F+QQYYA++D R L++ Y+
Sbjct: 11 TENLKSLVLHFLQQYYAIYDSG-DRQGLLDAYHDGACC 47
>d1q40b_ d.17.4.2 (B:) NTF2-like domain of mRNA export factor
MEX67 {Yeast (Candida albicans) [TaxId: 5476]}
Length = 205
Score = 31.2 bits (70), Expect = 0.014
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 12 IGKGFVQQYYALFDDPAQRPNLINMYNTETSF 43
+ F+ Y L+D R L+ +Y E+ F
Sbjct: 4 LATNFIANYLKLWDA--NRSELMILYQNESQF 33
>d1of5a_ d.17.4.2 (A:) NTF2-like domain of mRNA export factor
MEX67 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 221
Score = 30.0 bits (67), Expect = 0.029
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 6 NPAYEAIGKGFVQQYYALFDDPAQRPNLINMYNTETSF 43
N A F + L+D R L+N+Y+ ++ F
Sbjct: 7 NDALGQSSTDFATNFLNLWD--NNREQLLNLYSPQSQF 42
>d1ef5a_ d.15.1.5 (A:) Rgl {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 23.1 bits (50), Expect = 4.4
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 56 KIMEKFNCDDDPPHAYSQIFVL 77
+ M K N + DP Y + V+
Sbjct: 35 RAMSKHNLESDPAEEYELVQVI 56
>d1rlfa_ d.15.1.5 (A:) RalGDS-like factor, Rlf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 90
Score = 22.8 bits (49), Expect = 6.8
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 56 KIMEKFNCDDDPPHAYSQIFVL 77
++++K N D + + +L
Sbjct: 38 RVLKKNNRDSAVASEFELVQLL 59
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Length = 91
Score = 22.4 bits (48), Expect = 7.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 23 LFDDPAQRPNLINM 36
+F D QR NL+ M
Sbjct: 58 VFSDEEQRQNLLQM 71
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.426
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,832
Number of extensions: 14581
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 23
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)