BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4127
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VK89|TRM1_DROME Probable tRNA (guanine(26)-N(2))-dimethyltransferase OS=Drosophila
melanogaster GN=CG6388 PE=2 SV=1
Length = 578
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/66 (66%), Positives = 50/66 (75%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
+ FDA+DLDP+G P RFLD A+ L DGGLLLVT TDMAVL GN PE CYVKY +V L+
Sbjct: 172 KRFDAVDLDPYGCPNRFLDGAMQCLVDGGLLLVTATDMAVLAGNAPEACYVKYGSVPLRM 231
Query: 69 AACHEM 74
CHEM
Sbjct: 232 KCCHEM 237
>sp|Q9NXH9|TRM1_HUMAN tRNA (guanine(26)-N(2))-dimethyltransferase OS=Homo sapiens
GN=TRMT1 PE=1 SV=1
Length = 659
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 2 QLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61
Q +++ R FD IDLDP+G+P FLDAAV ++ +GGLL VTCTDMAVL GN+ ETCY KY
Sbjct: 219 QHQRVSER-FDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKY 277
Query: 62 NAVSLKTAACHEM 74
A++LK+ ACHEM
Sbjct: 278 GAMALKSRACHEM 290
>sp|Q3TX08|TRM1_MOUSE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Mus musculus
GN=Trmt1 PE=1 SV=2
Length = 663
Score = 99.8 bits (247), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTA 69
FD IDLDP+G+P FLDAAV ++ DGGLL VTCTDMAVL GN+ ETCY KY A++LK+
Sbjct: 225 RFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSR 284
Query: 70 ACHEM 74
ACHEM
Sbjct: 285 ACHEM 289
>sp|Q23270|TRM1_CAEEL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Caenorhabditis
elegans GN=trm-1 PE=1 SV=1
Length = 526
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/76 (55%), Positives = 56/76 (73%), Gaps = 2/76 (2%)
Query: 1 MQLEKIRG--RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
M + + RG + F A+DLDP+G + FLD+AV + D G+L+VTCTDMAVLCGNTPE CY
Sbjct: 153 MTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVADRGILMVTCTDMAVLCGNTPEACY 212
Query: 59 VKYNAVSLKTAACHEM 74
KY+AV+ + CHE+
Sbjct: 213 NKYDAVTTRMKCCHEV 228
>sp|Q9SRU7|TRM2_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3
Length = 589
Score = 90.9 bits (224), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/66 (56%), Positives = 48/66 (72%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
+ FD +DLDP+G+P+ FLD+A+ S+ DGGLL+ T TDMAVLCG E CY KY + L+
Sbjct: 192 KEFDVVDLDPYGSPSIFLDSAIQSVTDGGLLMCTATDMAVLCGGNGEVCYSKYGSYPLRA 251
Query: 69 AACHEM 74
CHEM
Sbjct: 252 KYCHEM 257
>sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1
OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3
Length = 593
Score = 89.7 bits (221), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/66 (59%), Positives = 47/66 (71%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
+ FD +DLDP+G P+ FLD+AV S+ DGGLL+ T TDMAVLCG E CY KY + LK
Sbjct: 192 KDFDVVDLDPYGAPSIFLDSAVQSVADGGLLMCTATDMAVLCGANGEVCYSKYGSYPLKG 251
Query: 69 AACHEM 74
CHEM
Sbjct: 252 KYCHEM 257
>sp|Q9P804|TRM1_SCHPO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trm1 PE=1 SV=1
Length = 548
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT-PETCYVKYNAVSLKT 68
H+D IDLDP+G+ FLDAAV S+ GLL +TCTD AVL GN PE C+ Y SL++
Sbjct: 194 HYDVIDLDPYGSAAPFLDAAVQSVSKDGLLCITCTDSAVLAGNAYPEKCFSNYGGSSLRS 253
Query: 69 AACHE 73
CHE
Sbjct: 254 NFCHE 258
>sp|P81554|TRM1_PYRFU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=trm1
PE=1 SV=1
Length = 381
Score = 75.9 bits (185), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 45/68 (66%)
Query: 7 RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
+ R+F IDLDPFG+P FLD A+ S++ G+L VT TD A LCG P+ C KY AV L
Sbjct: 130 KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGVTATDGAPLCGAHPKACLRKYLAVPL 189
Query: 67 KTAACHEM 74
+ CHE+
Sbjct: 190 RGELCHEV 197
>sp|O59493|TRM1_PYRHO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=trm1 PE=1 SV=1
Length = 381
Score = 75.5 bits (184), Expect = 8e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 43/68 (63%)
Query: 7 RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
R R+F IDLDPFG+P FLD A+ S + G+L VT TD A LCG P C KY AV L
Sbjct: 131 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPL 190
Query: 67 KTAACHEM 74
+ CHE+
Sbjct: 191 RGELCHEV 198
>sp|Q9V1P3|TRM1_PYRAB tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=trm1 PE=3 SV=2
Length = 379
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/68 (50%), Positives = 45/68 (66%)
Query: 7 RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
+ R+F IDLDPFG+P FLD A+ S++ G+L +T TD A LCG P+ C KY AV L
Sbjct: 128 KHRYFHFIDLDPFGSPMEFLDTALRSVKRKGILGITATDGAPLCGAHPKACMRKYLAVPL 187
Query: 67 KTAACHEM 74
+ CHE+
Sbjct: 188 RGELCHEV 195
>sp|Q5JIB3|TRM1_PYRKO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=trm1 PE=3 SV=1
Length = 376
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 41/65 (63%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
R+FD +DLDPFG+P FLD A+ S+R G+L VT TD VLCG C KY A ++
Sbjct: 130 RYFDFLDLDPFGSPVEFLDTALRSVRRNGVLAVTATDTGVLCGAYRNACLRKYLAEPIRG 189
Query: 69 AACHE 73
CHE
Sbjct: 190 PLCHE 194
>sp|C5A6N2|TRM1_THEGJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=trm1 PE=3 SV=1
Length = 378
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 33/65 (50%), Positives = 41/65 (63%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
R+FD IDLDPFG+P FLD+A+ S+R G L +T TD VLCG C KY A ++
Sbjct: 131 RYFDFIDLDPFGSPVEFLDSALRSVRRRGFLGLTATDTGVLCGAYRRACRRKYLAEPIRG 190
Query: 69 AACHE 73
CHE
Sbjct: 191 ELCHE 195
>sp|A5UM08|TRM1_METS3 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=trm1 PE=3
SV=1
Length = 388
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVK 60
M L RG FD ID+DPFG P+ FLD+A R LL VT TD + LCG E C K
Sbjct: 118 MFLRMHRGE-FDVIDIDPFGTPSPFLDSAGYCSRRNSLLCVTATDTSALCGTYKEPCIRK 176
Query: 61 YNAVSLKTAACHE 73
YNA K+ CHE
Sbjct: 177 YNAKPYKSEYCHE 189
>sp|P15565|TRM1_YEAST tRNA (guanine(26)-N(2))-dimethyltransferase, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM1 PE=1 SV=1
Length = 570
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 1 MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT-PETCYV 59
M K F IDLDP+G T F+DAA+ S+ +GGL+LVTCTD++VL GN PE C+
Sbjct: 197 MYRNKATNNKFHVIDLDPYGTVTPFVDAAIQSIEEGGLMLVTCTDLSVLAGNGYPEKCFA 256
Query: 60 KYNAVSL 66
Y ++
Sbjct: 257 LYGGANM 263
>sp|B6YUU9|TRM1_THEON tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermococcus
onnurineus (strain NA1) GN=trm1 PE=3 SV=1
Length = 377
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
R+FD +DLDPFG+P FLD+A+ +++ G+L +T TD VLCG C KY A ++
Sbjct: 130 RYFDFVDLDPFGSPMEFLDSALRAVKRRGVLAITATDTGVLCGAYRNACLRKYLAEPIRG 189
Query: 69 AACHE 73
CHE
Sbjct: 190 ELCHE 194
>sp|P0CW65|TRM1_METMP tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcus
maripaludis (strain S2 / LL) GN=trm1 PE=3 SV=1
Length = 373
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 11 FDAIDLDPFGNPTRFLDAAV-SSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67
F+ +DLDPFG+P +LD+ + +SL GGLL +T TD AVLCG +TC KYNAV LK
Sbjct: 125 FNVVDLDPFGSPVPYLDSGIRASLTKGGLLCMTATDTAVLCGAYRKTCIRKYNAVPLK 182
>sp|P0CW64|TRM1_METMI tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcus
maripaludis GN=trm1 PE=3 SV=1
Length = 373
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 11 FDAIDLDPFGNPTRFLDAAV-SSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67
F+ +DLDPFG+P +LD+ + +SL GGLL +T TD AVLCG +TC KYNAV LK
Sbjct: 125 FNVVDLDPFGSPVPYLDSGIRASLTKGGLLCMTATDTAVLCGAYRKTCIRKYNAVPLK 182
>sp|O27258|TRM1_METTH tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=trm1 PE=3 SV=1
Length = 380
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 6 IRGRH--FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63
+R H FD ID+DPFG P F+D+A +S R+ LL VT TD + LCG + C KY++
Sbjct: 114 LRSNHGRFDVIDIDPFGTPAPFMDSAAASARNNSLLAVTATDTSSLCGTYIKPCLRKYSS 173
Query: 64 VSLKTAACHE 73
LKT CHE
Sbjct: 174 RPLKTEYCHE 183
>sp|A6VIL5|TRM1_METM7 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=trm1 PE=3
SV=1
Length = 373
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 11 FDAIDLDPFGNPTRFLDAAV-SSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67
F+ +DLDPFG+P +LD+ + +SL GGLL +T TD AVLCG +TC KYNA+ LK
Sbjct: 125 FNVVDLDPFGSPVPYLDSGIRASLTKGGLLCMTATDTAVLCGAYRKTCIRKYNAIPLK 182
>sp|A9A871|TRM1_METM6 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=trm1 PE=3
SV=1
Length = 373
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 11 FDAIDLDPFGNPTRFLDAAV-SSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67
F+ +DLDPFG+P +LD+ + +SL GGLL +T TD AVLCG +TC KYNA+ LK
Sbjct: 125 FNVVDLDPFGSPVPYLDSGIRASLTKGGLLCMTATDTAVLCGAYRKTCIRKYNAIPLK 182
>sp|A4FZY5|TRM1_METM5 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=trm1 PE=3
SV=1
Length = 373
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 11 FDAIDLDPFGNPTRFLDAAV-SSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67
F+ +DLDPFG+P +LD+ + +SL GGLL +T TD AVLCG +TC KYNA+ LK
Sbjct: 125 FNVVDLDPFGSPVPYLDSGIRASLTKGGLLCMTATDTAVLCGAYRKTCIRKYNAIPLK 182
>sp|Q2NI56|TRM1_METST tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=trm1 PE=3 SV=1
Length = 390
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 11 FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAA 70
FD +D+DPFG P F + +++R GGL+ ++ TD + LCG + C KY A LKT
Sbjct: 124 FDVVDIDPFGTPAMFTQSTAANIRPGGLICISATDTSALCGTYHDPCLRKYGAKPLKTEY 183
Query: 71 CHE 73
CHE
Sbjct: 184 CHE 186
>sp|A1RV26|TRM1_PYRIL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=trm1 PE=3
SV=1
Length = 352
Score = 69.3 bits (168), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 3 LEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYN 62
L K+R D +D+DPFG+P FL AA +LRD GL+ VT TD AVL G P C+ +YN
Sbjct: 114 LHKLRNT-CDVVDIDPFGSPAPFLHAAFRALRDEGLICVTATDTAVLVGRYPRKCFRRYN 172
Query: 63 AVSLKT 68
+V +T
Sbjct: 173 SVIRRT 178
>sp|O67010|TRM1_AQUAE tRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase
OS=Aquifex aeolicus (strain VF5) GN=trm1 PE=1 SV=1
Length = 392
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 3 LEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYN 62
L K G FD +DLDPFG P F+++ S++ GG+L +T TD A L G P+TC +Y
Sbjct: 118 LRKEWGFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYM 177
Query: 63 AVSLKTAACHEM 74
A L+ HE+
Sbjct: 178 ARPLRNEFKHEV 189
>sp|A4WMB7|TRM1_PYRAR tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321) GN=trm1 PE=3
SV=1
Length = 356
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 3 LEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYN 62
L ++R + D +D+DPFG+P FL A +LR+ G++ VT TD AVL G P+ C +Y
Sbjct: 116 LHRLRDK-CDVVDIDPFGSPAPFLQAGFRALREEGVICVTATDTAVLVGRYPKKCLRRYG 174
Query: 63 AVSLKT 68
AV KT
Sbjct: 175 AVMFKT 180
>sp|A3MTQ5|TRM1_PYRCJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=trm1 PE=3 SV=1
Length = 358
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 3 LEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYN 62
L K+RG+ D +D+DPFG+P FL AA +L++ G++ T TD AVL G P C +Y
Sbjct: 118 LHKLRGQ-CDVVDVDPFGSPAPFLSAAFRALKNEGIVCATATDTAVLVGRYPRKCLRRYG 176
Query: 63 AVSLKTAACHEM 74
+V K+ EM
Sbjct: 177 SVIRKSPFYLEM 188
>sp|Q58356|TRM1_METJA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm1 PE=3 SV=1
Length = 374
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSL-RDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67
R F+ +D+DPFG+P +++ A+ +L GLL +T TD A LCG + ++C KY A L
Sbjct: 123 RFFNVVDIDPFGSPAPYVEQAIRALVTRNGLLCLTATDTAALCGRSKKSCLRKYLAYPLF 182
Query: 68 TAACHE 73
CHE
Sbjct: 183 GRDCHE 188
>sp|Q8SR99|TRM1_ENCCU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Encephalitozoon
cuniculi (strain GB-M1) GN=TRM1 PE=1 SV=1
Length = 432
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 11 FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAA 70
FD ID+DPFG+ + ++D+A+ ++R G+L +T TD VLC N C +KY+ +K
Sbjct: 137 FDVIDIDPFGSCSEYIDSALRAIRHKGILCLTATDKGVLCSNE-RKCLIKYSTSIMKGMG 195
Query: 71 CHEMP 75
+E+P
Sbjct: 196 MNEVP 200
>sp|Q8ZWT5|TRM1_PYRAE tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=trm1 PE=3 SV=1
Length = 363
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 12 DAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
D +D+DPFG+P F+ A +L++ GL+ T TD AVL G P C +Y +V +KT
Sbjct: 124 DVVDIDPFGSPAPFIHGAFRALKEEGLICATATDTAVLVGRYPRKCLRRYGSVIVKT 180
>sp|O29443|TRM1_ARCFU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=trm1 PE=3 SV=1
Length = 349
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 6 IRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVS 65
+R R F+ ID+DPFG+P F+D+A S + L VT TD A LCG+ + KY A +
Sbjct: 97 MRQRAFEHIDIDPFGSPAPFMDSACFSAKR--YLSVTATDTAALCGSATNSGLKKYGAFA 154
Query: 66 LKTAACHEM 74
+KT HE+
Sbjct: 155 VKTDVYHEV 163
>sp|B1YCV9|TRM1_PYRNV tRNA (guanine(26)-N(2))-dimethyltransferase OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=trm1 PE=3 SV=1
Length = 351
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 35/57 (61%)
Query: 12 DAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
D +D+DPFG+P ++ AA +LRD GLL T TD AVL G P C +Y + KT
Sbjct: 122 DVVDIDPFGSPAPYIHAAFRALRDEGLLCATATDTAVLVGRYPRKCLRRYWSTVRKT 178
>sp|Q97AR2|TRM1_THEVO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermoplasma
volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 /
NBRC 15438 / GSS1) GN=trm1 PE=3 SV=1
Length = 342
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 11 FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAA 70
FD ID+DP+G+P +LDAA+ ++R GG L +T TD + L G+T +Y A +
Sbjct: 112 FDYIDVDPYGSPVPYLDAAIMNVRKGGYLGITATDQSTLTGSTLNKTRRRYGAYIVNDIY 171
Query: 71 CHEM 74
HEM
Sbjct: 172 RHEM 175
>sp|A6UUN6|TRM1_META3 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=trm1 PE=3
SV=1
Length = 375
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSS-LRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67
R F+ +D+DPFG P+ +LD+A+ S + G+L +T TD AVL G+ +TC Y+A LK
Sbjct: 126 RKFNVVDIDPFGAPSPYLDSAIRSIITKNGILCMTATDTAVLYGSYRKTCIRNYDATPLK 185
>sp|Q8TYY7|TRM1_METKA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=trm1 PE=3 SV=1
Length = 383
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 MQLEKIRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVK 60
M +++ GR FD +D+DPFG P FLDAAV ++R+ G++ ++ TD++ L G P + K
Sbjct: 113 MHEDELAGR-FDYVDIDPFGPPVPFLDAAVRTVRNRGVVGISATDVSALAGRYPRSARRK 171
Query: 61 Y 61
Y
Sbjct: 172 Y 172
>sp|P57706|TRM1_THEAC tRNA (guanine(26)-N(2))-dimethyltransferase OS=Thermoplasma
acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 /
NBRC 15155 / AMRC-C165) GN=trm1 PE=3 SV=1
Length = 344
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 11 FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAA 70
++ +D+DP+G+P +LDAA+ ++ G L VT TD + L G+ P ++Y+A+
Sbjct: 112 YEYVDVDPYGSPVPYLDAALMGVKRNGFLGVTATDQSALTGSVPHKTRIRYDALIKNDTF 171
Query: 71 CHEM 74
HEM
Sbjct: 172 RHEM 175
>sp|Q466T6|TRM1_METBF tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=trm1 PE=3 SV=1
Length = 388
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
+ + +D+DPFG P FLDAA +S+R G+L VT TD A LCG + KY +V L T
Sbjct: 130 QKYHIVDIDPFGTPAPFLDAASASVR--GMLSVTATDTAPLCGAHLKAGIRKYASVPLNT 187
Query: 69 AACHEM 74
EM
Sbjct: 188 EYHSEM 193
>sp|Q97ZH0|TRM1_SULSO tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=trm1 PE=3 SV=1
Length = 378
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 43/63 (68%)
Query: 12 DAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAAC 71
D ID+DPFG+P F+ +++++ G++ T TD++ L G++P +C KY+A++ K ++
Sbjct: 125 DYIDIDPFGSPAPFILSSLNAATRNGIVAFTATDLSPLEGSSPTSCRRKYDAINHKLSSS 184
Query: 72 HEM 74
E+
Sbjct: 185 KEL 187
>sp|A3CW75|TRM1_METMJ tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=trm1
PE=3 SV=1
Length = 371
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 6 IRGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCG 51
+ GR FDA+DLDPFG P F+D+A S G L VT TD A LCG
Sbjct: 113 MSGRTFDAVDLDPFGTPAPFVDSAARSA--GNYLFVTATDTAPLCG 156
>sp|Q8TGX6|TRM1_METAC tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=trm1 PE=3 SV=1
Length = 388
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
+ F +D+DPFG P +LDAA ++ + G+L VT TD A LCG + KY AV L T
Sbjct: 130 QKFHIVDVDPFGTPAPYLDAAATAAQ--GMLSVTATDTAPLCGAHLNSGIRKYAAVPLNT 187
Query: 69 AACHEM 74
EM
Sbjct: 188 EYHSEM 193
>sp|Q12Y46|TRM1_METBU tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanococcoides
burtonii (strain DSM 6242) GN=trm1 PE=3 SV=2
Length = 386
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
R F+ +DLDPFG+PT +LDAA S L VT TD A LCG + KY AV L
Sbjct: 130 RRFNIVDLDPFGSPTPYLDAATRSAVH--FLEVTATDTAPLCGAHFNSGMRKYAAVPLNN 187
Query: 69 AACHEM 74
EM
Sbjct: 188 EFHSEM 193
>sp|Q8PU28|TRM1_METMA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=trm1 PE=3 SV=1
Length = 388
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
+ F +D+DPFG P+ +LDAA SS +L VT TD A LCG + KY +V L T
Sbjct: 130 QRFHIVDVDPFGTPSPYLDAAASSAYS--MLSVTATDTAPLCGAHLNSGIRKYASVPLNT 187
Query: 69 AACHEM 74
EM
Sbjct: 188 EYHSEM 193
>sp|Q3IUJ2|TRM1_NATPD tRNA (guanine(26)-N(2))-dimethyltransferase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=trm1 PE=3
SV=1
Length = 366
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 12 DAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAAC 71
D +DLDPFG P F DAAV S G L VT TD A LCG E+ Y+AV T
Sbjct: 116 DVVDLDPFGTPMAFADAAVRSA--GEYLCVTATDTAPLCGAHFESGVRSYDAVPRNTEFH 173
Query: 72 HEM 74
EM
Sbjct: 174 AEM 176
>sp|B9LSI7|TRM1_HALLT tRNA (guanine(26)-N(2))-dimethyltransferase OS=Halorubrum
lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 /
ACAM 34) GN=trm1 PE=3 SV=1
Length = 381
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 11 FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAA 70
FD +DLDP+G P F DAA+++ R+ L+ VT TD A LCG + KY AV T
Sbjct: 118 FDVVDLDPYGTPIPFADAALANARN--LVCVTATDTAPLCGAHLNSGIRKYGAVPRNTDY 175
Query: 71 CHEM 74
EM
Sbjct: 176 HPEM 179
>sp|Q5UYV8|TRM1_HALMA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=trm1 PE=3 SV=1
Length = 367
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 11 FDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAA 70
FD +D+DPFG P F DAAV + LL VT TD A LCG E+ Y AV T
Sbjct: 115 FDVVDVDPFGTPIPFADAAVQGTKH--LLCVTATDTAPLCGAHFESGVRSYGAVPRNTEF 172
Query: 71 CHEM 74
EM
Sbjct: 173 HAEM 176
>sp|P57705|TRM1_HALSA tRNA (guanine(26)-N(2))-dimethyltransferase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=trm1 PE=3 SV=1
Length = 371
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
R D +D+DPFG+P F DAA ++ R+ L+ VT TD A LCG E+ KY+A T
Sbjct: 117 RVLDVVDIDPFGSPMPFADAAFANARN--LVCVTATDTAPLCGAHFESGVRKYSATPRNT 174
Query: 69 AACHEM 74
EM
Sbjct: 175 NYHAEM 180
>sp|B0R713|TRM1_HALS3 tRNA (guanine(26)-N(2))-dimethyltransferase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=trm1
PE=3 SV=1
Length = 371
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKT 68
R D +D+DPFG+P F DAA ++ R+ L+ VT TD A LCG E+ KY+A T
Sbjct: 117 RVLDVVDIDPFGSPMPFADAAFANARN--LVCVTATDTAPLCGAHFESGVRKYSATPRNT 174
Query: 69 AACHEM 74
EM
Sbjct: 175 NYHAEM 180
>sp|C3NDZ5|TRM1_SULIY tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain Y.G.57.14 / Yellowstone #1) GN=trm1
PE=3 SV=1
Length = 378
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 41/61 (67%)
Query: 14 IDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHE 73
ID+DPFG+P F+ ++V++ G++ T TD++ L G++ +C KY+A++ K ++ E
Sbjct: 127 IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRRKYDAINYKLSSSKE 186
Query: 74 M 74
+
Sbjct: 187 L 187
>sp|C3NHQ8|TRM1_SULIN tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain Y.N.15.51 / Yellowstone #2) GN=trm1
PE=3 SV=1
Length = 378
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 41/61 (67%)
Query: 14 IDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHE 73
ID+DPFG+P F+ ++V++ G++ T TD++ L G++ +C KY+A++ K ++ E
Sbjct: 127 IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRRKYDAINYKLSSSKE 186
Query: 74 M 74
+
Sbjct: 187 L 187
>sp|C3MPR5|TRM1_SULIL tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain L.S.2.15 / Lassen #1) GN=trm1 PE=3
SV=1
Length = 378
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 41/61 (67%)
Query: 14 IDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHE 73
ID+DPFG+P F+ ++V++ G++ T TD++ L G++ +C KY+A++ K ++ E
Sbjct: 127 IDIDPFGSPVPFILSSVNATIRNGIVAFTATDLSPLEGSSRTSCRRKYDAINYKLSSSKE 186
Query: 74 M 74
+
Sbjct: 187 L 187
>sp|C3MYQ9|TRM1_SULIM tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sulfolobus
islandicus (strain M.14.25 / Kamchatka #1) GN=trm1 PE=3
SV=1
Length = 378
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 41/61 (67%)
Query: 14 IDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHE 73
ID+DPFG+P F+ +++++ G++ T TD++ L G++ +C KY+A++ K ++ E
Sbjct: 127 IDIDPFGSPVPFILSSINATIRNGIVAFTATDLSPLEGSSRTSCRRKYDAINYKLSSSKE 186
Query: 74 M 74
+
Sbjct: 187 L 187
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,536,955
Number of Sequences: 539616
Number of extensions: 920305
Number of successful extensions: 2715
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2623
Number of HSP's gapped (non-prelim): 70
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)