Query psy4127
Match_columns 75
No_of_seqs 100 out of 337
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:38:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3axs_A Probable N(2),N(2)-dime 99.7 9.4E-18 3.2E-22 126.6 3.3 67 8-74 123-189 (392)
2 2dul_A N(2),N(2)-dimethylguano 99.7 1.2E-17 4.2E-22 124.5 3.3 66 9-74 130-195 (378)
3 3k6r_A Putative transferase PH 95.1 0.016 5.5E-07 41.5 3.4 34 8-41 190-223 (278)
4 2frn_A Hypothetical protein PH 92.9 0.1 3.4E-06 36.2 3.8 38 8-45 190-227 (278)
5 3a27_A TYW2, uncharacterized p 92.7 0.11 3.9E-06 35.9 3.8 38 9-46 185-222 (272)
6 2igt_A SAM dependent methyltra 92.0 0.12 4E-06 37.3 3.2 42 8-49 223-278 (332)
7 1ws6_A Methyltransferase; stru 89.5 0.37 1.3E-05 29.5 3.5 41 9-49 109-153 (171)
8 1wxx_A TT1595, hypothetical pr 88.0 0.46 1.6E-05 34.3 3.6 37 8-44 277-326 (382)
9 2yx1_A Hypothetical protein MJ 87.5 0.53 1.8E-05 33.5 3.7 36 9-44 257-292 (336)
10 3p9n_A Possible methyltransfer 86.8 1.2 3.9E-05 28.3 4.7 38 8-45 111-155 (189)
11 1iy9_A Spermidine synthase; ro 86.5 0.58 2E-05 32.5 3.3 37 8-44 146-190 (275)
12 1sui_A Caffeoyl-COA O-methyltr 85.2 1.2 4.1E-05 30.2 4.3 37 8-44 154-191 (247)
13 4dmg_A Putative uncharacterize 85.2 0.61 2.1E-05 34.5 3.0 34 10-43 280-326 (393)
14 3adn_A Spermidine synthase; am 85.1 0.68 2.3E-05 32.8 3.1 37 8-44 155-199 (294)
15 3e05_A Precorrin-6Y C5,15-meth 85.0 1.5 5.2E-05 27.9 4.6 36 9-44 107-143 (204)
16 1g60_A Adenine-specific methyl 84.9 0.64 2.2E-05 31.9 2.8 40 7-46 20-77 (260)
17 2yvl_A TRMI protein, hypotheti 84.2 2.1 7E-05 27.8 5.0 35 9-44 157-191 (248)
18 3dr5_A Putative O-methyltransf 83.9 0.94 3.2E-05 30.3 3.3 38 8-45 127-165 (221)
19 2avd_A Catechol-O-methyltransf 83.7 0.79 2.7E-05 29.7 2.8 35 9-43 144-179 (229)
20 3hm2_A Precorrin-6Y C5,15-meth 83.2 2.4 8.2E-05 25.9 4.8 36 9-44 93-128 (178)
21 3tr6_A O-methyltransferase; ce 83.2 0.78 2.7E-05 29.7 2.6 37 9-45 139-176 (225)
22 1boo_A Protein (N-4 cytosine-s 82.6 1.4 4.9E-05 31.3 4.0 40 7-46 30-87 (323)
23 1o54_A SAM-dependent O-methylt 82.3 1.3 4.6E-05 29.9 3.6 35 9-44 180-214 (277)
24 3gjy_A Spermidine synthase; AP 82.3 1.1 3.9E-05 32.6 3.4 39 8-46 157-203 (317)
25 1inl_A Spermidine synthase; be 82.1 0.85 2.9E-05 32.0 2.6 36 8-43 161-205 (296)
26 2qfm_A Spermine synthase; sper 82.0 1 3.4E-05 33.8 3.1 38 8-45 265-316 (364)
27 3mb5_A SAM-dependent methyltra 82.0 1.5 5.3E-05 28.8 3.7 36 8-44 160-195 (255)
28 3tfw_A Putative O-methyltransf 81.1 1.9 6.6E-05 28.9 4.0 37 9-45 135-172 (248)
29 3duw_A OMT, O-methyltransferas 81.0 2.1 7E-05 27.6 4.0 38 9-46 132-170 (223)
30 1uir_A Polyamine aminopropyltr 80.8 1.3 4.4E-05 31.3 3.2 37 8-44 149-196 (314)
31 3njr_A Precorrin-6Y methylase; 80.8 2.6 9E-05 27.5 4.5 37 9-46 121-157 (204)
32 3dxy_A TRNA (guanine-N(7)-)-me 80.3 1.9 6.6E-05 28.7 3.8 40 8-48 103-154 (218)
33 2pwy_A TRNA (adenine-N(1)-)-me 80.3 1.4 4.9E-05 28.8 3.1 35 9-44 165-199 (258)
34 3m4x_A NOL1/NOP2/SUN family pr 80.2 1.1 3.8E-05 34.0 2.8 37 8-44 173-236 (456)
35 3c0k_A UPF0064 protein YCCW; P 80.1 1 3.5E-05 32.6 2.5 37 8-44 291-340 (396)
36 2cmg_A Spermidine synthase; tr 80.0 1.3 4.6E-05 30.7 3.0 34 9-43 138-171 (262)
37 2as0_A Hypothetical protein PH 79.6 0.74 2.5E-05 33.2 1.6 36 8-43 287-335 (396)
38 1o9g_A RRNA methyltransferase; 78.9 1.9 6.4E-05 28.6 3.3 38 9-46 167-217 (250)
39 2b2c_A Spermidine synthase; be 78.9 1.5 5.1E-05 31.3 3.0 36 8-43 179-222 (314)
40 1eg2_A Modification methylase 78.9 1.7 5.7E-05 31.3 3.3 40 7-46 55-109 (319)
41 3bwc_A Spermidine synthase; SA 78.6 1.5 5E-05 30.8 2.8 37 8-44 167-211 (304)
42 3ntv_A MW1564 protein; rossman 78.5 1 3.5E-05 29.9 1.9 37 8-44 140-177 (232)
43 2i7c_A Spermidine synthase; tr 78.4 1.8 6.1E-05 30.0 3.2 37 8-44 149-193 (283)
44 2f8l_A Hypothetical protein LM 78.3 2.2 7.6E-05 30.0 3.8 29 24-53 237-265 (344)
45 2ift_A Putative methylase HI07 78.0 0.36 1.2E-05 31.5 -0.5 58 9-66 123-188 (201)
46 1mjf_A Spermidine synthase; sp 78.0 1.8 6.2E-05 29.9 3.2 36 8-43 150-193 (281)
47 1l3i_A Precorrin-6Y methyltran 78.0 2 6.9E-05 26.3 3.1 37 9-45 99-136 (192)
48 3o4f_A Spermidine synthase; am 78.0 2.1 7E-05 31.1 3.5 38 7-44 154-199 (294)
49 1ej0_A FTSJ; methyltransferase 77.8 2.3 7.7E-05 25.4 3.2 37 8-44 86-137 (180)
50 3v97_A Ribosomal RNA large sub 77.8 1.5 5.2E-05 34.7 3.0 54 8-64 607-675 (703)
51 2fca_A TRNA (guanine-N(7)-)-me 77.7 4.5 0.00015 26.4 4.9 39 8-47 106-156 (213)
52 3cbg_A O-methyltransferase; cy 77.1 1.4 4.9E-05 29.2 2.3 36 9-44 147-183 (232)
53 2ozv_A Hypothetical protein AT 76.9 1.9 6.5E-05 29.3 3.0 35 8-42 113-169 (260)
54 1jsx_A Glucose-inhibited divis 76.3 1.4 4.6E-05 28.0 2.0 34 9-42 131-164 (207)
55 2ipx_A RRNA 2'-O-methyltransfe 75.8 2.8 9.7E-05 27.3 3.5 36 8-44 145-183 (233)
56 1yzh_A TRNA (guanine-N(7)-)-me 74.9 4.7 0.00016 25.9 4.4 52 8-62 109-173 (214)
57 3r3h_A O-methyltransferase, SA 74.4 1.5 5E-05 29.6 1.9 38 8-45 134-172 (242)
58 2o07_A Spermidine synthase; st 74.4 2.1 7E-05 30.3 2.7 36 8-43 166-209 (304)
59 2b78_A Hypothetical protein SM 74.0 2.2 7.4E-05 31.0 2.8 36 9-44 284-332 (385)
60 1dus_A MJ0882; hypothetical pr 73.6 1.2 4.3E-05 27.3 1.2 38 8-45 117-159 (194)
61 2fpo_A Methylase YHHF; structu 73.5 3.2 0.00011 26.8 3.3 39 9-47 121-164 (202)
62 3orh_A Guanidinoacetate N-meth 73.2 2.3 7.9E-05 28.3 2.6 34 8-41 126-168 (236)
63 1xdz_A Methyltransferase GIDB; 73.1 2 6.8E-05 28.4 2.2 35 8-42 139-173 (240)
64 3c3y_A Pfomt, O-methyltransfer 72.8 1.8 6.2E-05 28.9 2.0 37 8-44 145-182 (237)
65 2pt6_A Spermidine synthase; tr 72.6 3 0.0001 29.7 3.2 37 8-44 187-231 (321)
66 1xj5_A Spermidine synthase 1; 72.5 3.5 0.00012 29.7 3.6 36 8-43 192-235 (334)
67 3lpm_A Putative methyltransfer 72.0 2.8 9.5E-05 28.1 2.8 35 8-42 117-175 (259)
68 3hz7_A Uncharacterized protein 71.8 4.8 0.00017 23.9 3.6 36 14-49 4-42 (87)
69 3c6k_A Spermine synthase; sper 71.0 2.5 8.5E-05 31.9 2.6 37 8-44 282-332 (381)
70 1yb2_A Hypothetical protein TA 70.9 4.1 0.00014 27.5 3.5 35 9-44 178-212 (275)
71 3ajd_A Putative methyltransfer 70.5 2.7 9.1E-05 28.7 2.4 35 8-42 154-210 (274)
72 4fzv_A Putative methyltransfer 70.5 1.8 6.3E-05 31.9 1.7 21 24-44 265-286 (359)
73 3c3p_A Methyltransferase; NP_9 70.2 2.2 7.5E-05 27.4 1.9 33 11-43 127-160 (210)
74 3vc1_A Geranyl diphosphate 2-C 70.0 2.3 8E-05 29.2 2.1 32 9-44 184-222 (312)
75 1g8a_A Fibrillarin-like PRE-rR 69.5 4.9 0.00017 25.9 3.5 34 9-42 142-177 (227)
76 2gpy_A O-methyltransferase; st 69.3 2 6.9E-05 28.0 1.6 35 8-42 124-159 (233)
77 3mti_A RRNA methylase; SAM-dep 69.3 1.8 6.2E-05 27.0 1.3 36 8-43 87-135 (185)
78 2yxb_A Coenzyme B12-dependent 69.2 5.3 0.00018 25.9 3.6 38 9-48 45-82 (161)
79 2esr_A Methyltransferase; stru 68.8 2.1 7E-05 26.5 1.5 38 9-46 99-141 (177)
80 1ixk_A Methyltransferase; open 68.4 3.9 0.00013 28.7 3.0 22 23-44 226-248 (315)
81 2b25_A Hypothetical protein; s 67.9 3.4 0.00012 28.8 2.6 36 9-45 186-221 (336)
82 1i9g_A Hypothetical protein RV 67.5 4.6 0.00016 26.9 3.1 36 9-45 170-205 (280)
83 2jjq_A Uncharacterized RNA met 67.5 6.5 0.00022 29.2 4.2 33 10-43 353-387 (425)
84 2fhp_A Methylase, putative; al 67.4 3.7 0.00013 25.3 2.4 40 8-47 114-158 (187)
85 2qy6_A UPF0209 protein YFCK; s 66.4 4.8 0.00016 28.0 3.1 32 10-41 173-211 (257)
86 3u81_A Catechol O-methyltransf 66.3 4.6 0.00016 26.1 2.9 36 9-45 133-172 (221)
87 2epi_A UPF0045 protein MJ1052; 64.9 3.3 0.00011 25.5 1.8 33 21-53 21-53 (100)
88 2np3_A Putative TETR-family re 64.6 2.4 8.3E-05 26.6 1.2 41 23-63 33-73 (212)
89 3cvo_A Methyltransferase-like 63.5 9 0.00031 26.1 4.0 43 9-55 121-163 (202)
90 2ibo_A Hypothetical protein SP 63.5 2.2 7.5E-05 26.6 0.8 37 17-53 10-49 (104)
91 1fbn_A MJ fibrillarin homologu 62.9 6.9 0.00024 25.5 3.2 33 9-42 142-177 (230)
92 2qm3_A Predicted methyltransfe 62.8 12 0.00041 26.7 4.7 34 9-42 240-277 (373)
93 1sqg_A SUN protein, FMU protei 62.8 4.1 0.00014 29.8 2.3 34 9-42 314-373 (429)
94 2hnk_A SAM-dependent O-methylt 62.3 6.9 0.00024 25.6 3.2 36 9-44 146-182 (239)
95 1ccw_A Protein (glutamate muta 61.4 5 0.00017 25.2 2.2 40 9-50 30-69 (137)
96 2oo3_A Protein involved in cat 60.6 9.4 0.00032 27.6 3.8 33 8-41 157-196 (283)
97 3dmg_A Probable ribosomal RNA 59.8 4.3 0.00015 29.7 1.9 37 9-45 297-342 (381)
98 3mgg_A Methyltransferase; NYSG 59.3 7.3 0.00025 25.7 2.9 40 9-48 104-147 (276)
99 2gs9_A Hypothetical protein TT 58.5 7.4 0.00025 24.6 2.7 37 9-45 94-134 (211)
100 3m6w_A RRNA methylase; rRNA me 57.9 6.7 0.00023 29.8 2.8 37 8-44 168-231 (464)
101 1i1n_A Protein-L-isoaspartate 56.9 4.6 0.00016 26.0 1.5 33 9-43 150-182 (226)
102 2qwt_A Transcriptional regulat 56.9 1.4 4.9E-05 27.6 -1.0 39 24-63 17-55 (196)
103 1zx0_A Guanidinoacetate N-meth 56.3 8 0.00027 25.2 2.6 35 8-42 126-169 (236)
104 1xxl_A YCGJ protein; structura 56.0 6.2 0.00021 25.8 2.1 36 9-44 86-125 (239)
105 1k7j_A Protein YCIO, protein T 55.9 11 0.00036 25.5 3.3 34 13-47 4-37 (206)
106 3tma_A Methyltransferase; thum 55.6 22 0.00074 24.9 5.0 37 9-45 271-319 (354)
107 2ar0_A M.ecoki, type I restric 55.2 12 0.00039 28.7 3.7 52 9-61 260-329 (541)
108 1lxn_A Hypothetical protein MT 54.7 7.8 0.00027 23.7 2.2 31 21-51 17-47 (99)
109 3eey_A Putative rRNA methylase 54.3 7.7 0.00026 24.3 2.2 36 8-43 91-139 (197)
110 1jdq_A TM006 protein, hypothet 54.1 23 0.00078 21.4 4.3 37 13-49 28-66 (98)
111 3evz_A Methyltransferase; NYSG 53.9 11 0.00038 24.1 3.0 36 8-43 121-179 (230)
112 3nxc_A HTH-type protein SLMA; 53.9 2.9 9.8E-05 25.8 0.1 41 23-63 27-68 (212)
113 2rek_A Putative TETR-family tr 53.3 1.3 4.5E-05 27.5 -1.6 40 23-63 19-58 (199)
114 3ppb_A Putative TETR family tr 52.9 1.2 4.1E-05 27.1 -1.8 41 23-63 12-52 (195)
115 3thr_A Glycine N-methyltransfe 52.8 7.5 0.00026 25.9 2.1 40 8-47 128-179 (293)
116 3g89_A Ribosomal RNA small sub 52.6 7.1 0.00024 26.4 2.0 34 9-42 150-183 (249)
117 1nkv_A Hypothetical protein YJ 51.3 6.6 0.00023 25.5 1.6 36 9-44 102-141 (256)
118 2vdv_E TRNA (guanine-N(7)-)-me 50.9 11 0.00039 24.8 2.7 23 24-47 154-176 (246)
119 2wk1_A NOVP; transferase, O-me 50.8 3.1 0.00011 29.7 -0.1 36 9-44 208-245 (282)
120 3f4k_A Putative methyltransfer 50.6 11 0.00037 24.5 2.5 35 9-44 113-151 (257)
121 3dlc_A Putative S-adenosyl-L-m 50.2 12 0.00041 23.2 2.7 35 9-43 110-148 (219)
122 3bus_A REBM, methyltransferase 49.7 11 0.00036 24.8 2.4 36 9-44 128-167 (273)
123 2pbf_A Protein-L-isoaspartate 48.9 7.6 0.00026 24.9 1.6 34 9-44 161-194 (227)
124 1lxj_A YBL001C, hypothetical 1 48.7 7.6 0.00026 24.0 1.5 33 21-53 21-53 (104)
125 3kz9_A SMCR; transcriptional r 47.5 2.2 7.5E-05 26.1 -1.2 40 24-63 21-60 (206)
126 2p7i_A Hypothetical protein; p 47.5 10 0.00034 24.1 2.0 38 9-46 102-144 (250)
127 3l8d_A Methyltransferase; stru 46.9 14 0.00048 23.6 2.6 36 8-43 114-153 (242)
128 1kpg_A CFA synthase;, cyclopro 46.7 25 0.00086 23.2 4.0 37 9-45 128-170 (287)
129 3qkx_A Uncharacterized HTH-typ 46.3 2 6.7E-05 26.0 -1.5 40 24-63 12-51 (188)
130 3dcf_A Transcriptional regulat 46.3 1.8 6.3E-05 26.8 -1.7 41 23-63 34-74 (218)
131 3cgg_A SAM-dependent methyltra 46.2 10 0.00035 23.0 1.8 38 9-46 106-150 (195)
132 1yqh_A DUF77, IG hypothetical 46.1 7.2 0.00025 24.4 1.1 34 20-53 21-54 (109)
133 2zfu_A Nucleomethylin, cerebra 46.0 15 0.00052 23.2 2.7 35 9-43 114-151 (215)
134 2dg7_A Putative transcriptiona 45.0 2.5 8.5E-05 26.1 -1.2 41 23-63 10-50 (195)
135 3gzi_A Transcriptional regulat 44.9 3.6 0.00012 25.6 -0.5 41 23-63 20-60 (218)
136 3ckk_A TRNA (guanine-N(7)-)-me 43.8 18 0.0006 24.2 2.8 38 8-46 121-170 (235)
137 2yve_A Transcriptional regulat 43.8 2.3 7.7E-05 26.5 -1.6 40 24-63 8-47 (185)
138 2nyu_A Putative ribosomal RNA 43.6 20 0.00069 22.1 2.9 36 9-44 96-146 (196)
139 4htf_A S-adenosylmethionine-de 43.6 17 0.00058 24.2 2.7 37 8-44 134-174 (285)
140 3egq_A TETR family transcripti 43.3 2.9 0.0001 25.2 -1.1 40 24-63 8-47 (170)
141 3lhq_A Acrab operon repressor 43.2 1.7 5.7E-05 26.8 -2.3 40 24-63 18-57 (220)
142 1ve3_A Hypothetical protein PH 43.2 10 0.00035 23.9 1.5 37 9-45 102-144 (227)
143 3tos_A CALS11; methyltransfera 42.6 5.1 0.00017 28.4 -0.1 35 9-43 181-217 (257)
144 2yxd_A Probable cobalt-precorr 42.2 46 0.0016 19.8 4.4 50 9-62 99-148 (183)
145 3f1b_A TETR-like transcription 42.2 1.9 6.3E-05 26.4 -2.1 40 24-63 18-57 (203)
146 1kol_A Formaldehyde dehydrogen 42.0 15 0.00051 26.1 2.4 33 10-43 254-300 (398)
147 2b3t_A Protein methyltransfera 42.0 19 0.00066 24.1 2.8 20 23-42 218-237 (276)
148 3ljl_A Transcriptional regulat 41.9 1.9 6.6E-05 26.3 -2.1 41 23-63 17-57 (156)
149 2guh_A Putative TETR-family tr 41.9 2.7 9.4E-05 27.0 -1.4 40 24-63 43-82 (214)
150 1vlm_A SAM-dependent methyltra 41.9 18 0.00063 23.0 2.6 37 9-45 101-141 (219)
151 2frx_A Hypothetical protein YE 41.8 20 0.00069 27.0 3.2 21 24-44 227-248 (479)
152 2zig_A TTHA0409, putative modi 41.8 28 0.00097 23.9 3.7 39 8-46 38-100 (297)
153 3lbf_A Protein-L-isoaspartate 41.5 8.6 0.00029 24.3 0.9 35 9-45 142-176 (210)
154 1je3_A EC005, hypothetical 8.6 41.1 25 0.00084 21.3 3.0 36 14-49 30-67 (97)
155 2rae_A Transcriptional regulat 41.0 1.8 6.1E-05 26.9 -2.4 41 23-63 20-60 (207)
156 2dg8_A Putative TETR-family tr 40.5 1.9 6.4E-05 26.8 -2.3 41 23-63 12-52 (193)
157 3kkc_A TETR family transcripti 40.3 2.2 7.6E-05 25.7 -2.0 40 24-63 16-55 (177)
158 3kkz_A Uncharacterized protein 40.2 13 0.00044 24.5 1.7 36 8-44 112-151 (267)
159 3vyw_A MNMC2; tRNA wobble urid 40.1 25 0.00084 25.6 3.3 52 9-67 185-244 (308)
160 3bru_A Regulatory protein, TET 40.0 2.6 8.9E-05 26.3 -1.7 41 23-63 33-73 (222)
161 3cwr_A Transcriptional regulat 39.9 2 6.9E-05 26.3 -2.2 41 23-63 20-60 (208)
162 2avn_A Ubiquinone/menaquinone 39.9 26 0.00089 23.0 3.2 37 8-44 112-153 (260)
163 3fpf_A Mtnas, putative unchara 39.9 48 0.0016 23.8 4.8 39 8-46 186-225 (298)
164 3s5r_A Transcriptional regulat 39.9 2.4 8.1E-05 26.3 -2.0 41 23-63 13-53 (216)
165 3nx4_A Putative oxidoreductase 39.7 11 0.00038 25.7 1.3 31 10-43 211-241 (324)
166 2ih2_A Modification methylase 39.6 26 0.00088 24.6 3.3 23 24-46 145-167 (421)
167 1vk8_A Hypothetical protein TM 39.6 9.8 0.00034 23.8 1.0 36 18-53 24-62 (106)
168 3gu3_A Methyltransferase; alph 39.6 23 0.0008 23.7 2.9 37 9-45 88-128 (284)
169 1xa0_A Putative NADPH dependen 39.6 17 0.00059 24.9 2.3 31 10-43 216-246 (328)
170 2pjd_A Ribosomal RNA small sub 39.6 8.7 0.0003 27.0 0.8 38 8-45 259-305 (343)
171 3e8s_A Putative SAM dependent 39.5 16 0.00055 22.8 2.0 37 10-46 116-155 (227)
172 2eqa_A Hypothetical protein ST 39.5 25 0.00085 26.1 3.3 49 13-62 4-55 (352)
173 1nt2_A Fibrillarin-like PRE-rR 39.3 26 0.00089 22.8 3.1 34 9-42 125-160 (210)
174 3lcc_A Putative methyl chlorid 39.2 32 0.0011 22.0 3.5 38 9-46 131-174 (235)
175 3col_A Putative transcription 39.2 1.6 5.4E-05 26.5 -2.8 41 23-63 13-53 (196)
176 2p35_A Trans-aconitate 2-methy 38.8 18 0.00061 23.3 2.2 37 9-45 94-134 (259)
177 3i9f_A Putative type 11 methyl 38.7 15 0.00051 22.2 1.7 37 9-45 74-114 (170)
178 1jcu_A Conserved protein MTH16 38.5 22 0.00074 24.0 2.6 47 14-61 4-53 (208)
179 3ip1_A Alcohol dehydrogenase, 38.4 30 0.001 24.7 3.5 33 10-43 282-318 (404)
180 3mvp_A TETR/ACRR transcription 38.2 2.2 7.6E-05 26.4 -2.3 40 24-63 30-69 (217)
181 3fpc_A NADP-dependent alcohol 38.2 19 0.00065 25.1 2.4 32 10-43 235-266 (352)
182 4fsd_A Arsenic methyltransfera 38.1 22 0.00075 25.3 2.7 35 9-43 165-203 (383)
183 2o7t_A Transcriptional regulat 38.1 3.2 0.00011 25.8 -1.6 40 24-63 12-51 (199)
184 4dzr_A Protein-(glutamine-N5) 37.9 22 0.00075 21.9 2.4 21 23-43 144-165 (215)
185 3on4_A Transcriptional regulat 37.8 2.3 7.8E-05 25.8 -2.2 41 23-63 13-53 (191)
186 1r18_A Protein-L-isoaspartate( 37.8 21 0.00071 23.0 2.4 35 9-45 162-196 (227)
187 3mq2_A 16S rRNA methyltransfer 37.8 16 0.00056 23.1 1.8 21 23-43 120-140 (218)
188 2okc_A Type I restriction enzy 37.8 31 0.0011 25.2 3.5 51 9-60 252-323 (445)
189 2xij_A Methylmalonyl-COA mutas 37.7 34 0.0012 28.0 4.1 38 9-48 631-668 (762)
190 2kw5_A SLR1183 protein; struct 37.6 19 0.00065 22.4 2.1 36 9-45 93-133 (202)
191 3m70_A Tellurite resistance pr 37.6 32 0.0011 22.8 3.3 36 8-43 182-223 (286)
192 3hnr_A Probable methyltransfer 37.5 26 0.00088 22.0 2.7 19 25-43 127-145 (220)
193 2qtq_A Transcriptional regulat 37.4 3.3 0.00011 25.5 -1.6 41 23-63 19-59 (213)
194 3he0_A Transcriptional regulat 37.1 1.6 5.6E-05 26.6 -3.0 41 23-63 14-54 (196)
195 3m6i_A L-arabinitol 4-dehydrog 37.1 36 0.0012 23.7 3.6 34 9-44 251-284 (363)
196 3g1o_A Transcriptional regulat 37.0 4.4 0.00015 26.3 -1.0 40 24-63 47-86 (255)
197 3lvj_C Sulfurtransferase TUSA; 36.9 59 0.002 18.5 4.5 37 13-49 12-50 (82)
198 4aci_A HTH-type transcriptiona 36.7 2 6.9E-05 26.3 -2.6 41 23-63 17-57 (191)
199 3jsj_A Putative TETR-family tr 36.4 3.2 0.00011 25.4 -1.7 40 23-63 12-51 (190)
200 1pl8_A Human sorbitol dehydrog 36.4 35 0.0012 23.8 3.5 33 9-43 241-273 (356)
201 3lwj_A Putative TETR-family tr 36.2 2.2 7.7E-05 26.2 -2.5 40 24-63 16-55 (202)
202 2g7s_A Transcriptional regulat 36.2 2.5 8.6E-05 25.6 -2.2 40 24-63 12-51 (194)
203 3h2b_A SAM-dependent methyltra 36.0 17 0.00058 22.6 1.7 38 9-46 101-144 (203)
204 1pb6_A Hypothetical transcript 35.8 2.7 9.4E-05 25.9 -2.1 40 24-63 22-61 (212)
205 3lsj_A DEST; transcriptional r 35.5 2.7 9.3E-05 26.3 -2.2 40 24-63 15-55 (220)
206 2vdw_A Vaccinia virus capping 35.4 31 0.0011 24.0 3.1 41 9-50 128-176 (302)
207 1pav_A Hypothetical protein TA 35.4 21 0.00072 20.1 1.9 37 13-49 8-46 (78)
208 3pfg_A N-methyltransferase; N, 35.3 21 0.00073 23.3 2.1 35 8-42 108-150 (263)
209 1tt7_A YHFP; alcohol dehydroge 35.2 20 0.00069 24.5 2.1 30 10-42 217-246 (330)
210 3b81_A Transcriptional regulat 35.1 2 7E-05 26.3 -2.8 41 23-63 14-54 (203)
211 2zb9_A Putative transcriptiona 35.1 2.8 9.4E-05 26.3 -2.2 40 24-63 27-66 (214)
212 4dcm_A Ribosomal RNA large sub 34.8 26 0.00088 25.3 2.7 38 8-45 290-336 (375)
213 2o57_A Putative sarcosine dime 34.8 21 0.00073 23.7 2.1 37 9-45 149-189 (297)
214 3vp5_A Transcriptional regulat 34.7 3.6 0.00012 25.7 -1.7 40 24-63 16-55 (189)
215 3bt7_A TRNA (uracil-5-)-methyl 34.5 36 0.0012 24.2 3.4 29 10-42 295-326 (369)
216 3e23_A Uncharacterized protein 34.5 19 0.00064 22.7 1.7 37 8-44 100-142 (211)
217 2fd5_A Transcriptional regulat 34.4 2 6.8E-05 26.2 -2.9 40 24-63 11-50 (180)
218 3dpj_A Transcription regulator 34.4 2.6 8.8E-05 25.8 -2.4 40 24-63 12-51 (194)
219 2p8j_A S-adenosylmethionine-de 34.3 19 0.00065 22.4 1.7 36 9-44 88-129 (209)
220 2dph_A Formaldehyde dismutase; 34.2 18 0.00061 25.8 1.7 32 10-42 254-298 (398)
221 3ocj_A Putative exported prote 34.2 32 0.0011 23.2 2.9 35 9-43 186-227 (305)
222 3pas_A TETR family transcripti 34.2 2.1 7.1E-05 26.0 -2.8 40 24-63 12-51 (195)
223 3qwb_A Probable quinone oxidor 34.1 20 0.00069 24.7 1.9 32 9-43 216-247 (334)
224 3f0c_A TETR-molecule A, transc 34.0 3.3 0.00011 25.7 -1.9 41 23-63 14-54 (216)
225 2qko_A Possible transcriptiona 33.5 3.4 0.00012 26.0 -2.0 40 24-63 32-71 (215)
226 2b5w_A Glucose dehydrogenase; 33.4 20 0.0007 25.0 1.9 32 10-43 242-273 (357)
227 3ujc_A Phosphoethanolamine N-m 33.3 20 0.00068 23.1 1.7 36 9-44 119-160 (266)
228 3dh0_A SAM dependent methyltra 33.3 20 0.00068 22.5 1.7 36 9-44 105-144 (219)
229 1t33_A Putative transcriptiona 33.3 4 0.00014 25.6 -1.7 39 24-63 16-54 (224)
230 3qbm_A TETR transcriptional re 33.2 2.3 7.8E-05 25.9 -2.8 40 24-63 11-50 (199)
231 1y8c_A S-adenosylmethionine-de 33.1 17 0.00058 23.0 1.3 36 9-44 100-143 (246)
232 3e7q_A Transcriptional regulat 33.1 2.3 7.9E-05 26.2 -2.8 40 24-63 18-57 (215)
233 2yxl_A PH0851 protein, 450AA l 33.1 30 0.001 25.4 2.8 21 24-44 370-391 (450)
234 3bqz_B HTH-type transcriptiona 33.1 3.4 0.00012 25.1 -2.0 40 24-63 6-45 (194)
235 1req_A Methylmalonyl-COA mutas 33.0 41 0.0014 27.4 3.8 38 10-49 624-661 (727)
236 2qib_A TETR-family transcripti 32.9 4.3 0.00015 26.1 -1.6 41 23-63 16-56 (231)
237 1nv8_A HEMK protein; class I a 32.8 60 0.002 22.2 4.2 19 24-42 229-248 (284)
238 3sm4_A Exonuclease; homologous 32.7 14 0.00047 25.3 0.9 35 10-54 14-48 (229)
239 3uko_A Alcohol dehydrogenase c 32.7 39 0.0013 23.7 3.3 32 10-43 263-295 (378)
240 3frq_A Repressor protein MPHR( 32.6 2.6 8.9E-05 26.0 -2.6 41 23-63 11-51 (195)
241 2bm8_A Cephalosporin hydroxyla 32.6 48 0.0016 21.9 3.6 35 10-44 152-188 (236)
242 2zcm_A Biofilm operon icaabcd 32.5 3.6 0.00012 25.3 -2.0 42 22-63 9-50 (192)
243 4df3_A Fibrillarin-like rRNA/T 32.5 43 0.0015 23.0 3.4 35 9-43 146-182 (233)
244 3q0w_A HTH-type transcriptiona 32.2 4.6 0.00016 25.9 -1.6 40 24-63 48-87 (236)
245 4dvj_A Putative zinc-dependent 32.2 37 0.0013 23.9 3.1 33 9-43 238-270 (363)
246 1e3j_A NADP(H)-dependent ketos 32.1 53 0.0018 22.7 3.9 33 9-43 239-271 (352)
247 1iz0_A Quinone oxidoreductase; 32.0 21 0.00073 24.2 1.8 29 10-42 189-217 (302)
248 1vl5_A Unknown conserved prote 31.7 26 0.00089 22.8 2.1 36 9-44 102-141 (260)
249 3jwh_A HEN1; methyltransferase 31.7 29 0.00098 21.9 2.3 36 9-44 101-142 (217)
250 2vn8_A Reticulon-4-interacting 31.6 18 0.00063 25.4 1.4 33 10-43 248-280 (375)
251 2jj7_A Hemolysin II regulatory 31.6 2.7 9.1E-05 25.7 -2.7 40 24-63 11-50 (186)
252 1xtp_A LMAJ004091AAA; SGPP, st 31.5 22 0.00075 22.8 1.7 35 9-43 157-197 (254)
253 3rd3_A Probable transcriptiona 31.5 2.1 7.3E-05 26.0 -3.1 41 23-63 13-53 (197)
254 3c2b_A Transcriptional regulat 31.3 3.7 0.00013 25.6 -2.1 40 24-63 19-58 (221)
255 3g5l_A Putative S-adenosylmeth 31.2 22 0.00077 23.0 1.7 35 9-43 107-145 (253)
256 3dew_A Transcriptional regulat 31.0 2.8 9.4E-05 25.5 -2.7 41 23-63 11-51 (206)
257 4eye_A Probable oxidoreductase 30.9 25 0.00084 24.5 2.0 31 10-43 227-257 (342)
258 3uog_A Alcohol dehydrogenase; 30.9 20 0.00068 25.2 1.5 32 10-44 257-288 (363)
259 2pxx_A Uncharacterized protein 30.8 24 0.00081 21.8 1.7 22 23-44 139-160 (215)
260 3dli_A Methyltransferase; PSI- 30.7 34 0.0011 22.0 2.5 38 8-45 99-142 (240)
261 3ege_A Putative methyltransfer 30.7 66 0.0023 21.0 4.0 37 9-46 93-133 (261)
262 3knw_A Putative transcriptiona 30.4 3.6 0.00012 25.4 -2.3 41 23-63 17-57 (212)
263 2d6y_A Putative TETR family re 30.1 4 0.00014 25.7 -2.1 41 23-63 11-51 (202)
264 2fk8_A Methoxy mycolic acid sy 30.0 36 0.0012 23.0 2.6 37 9-45 154-196 (318)
265 3jyn_A Quinone oxidoreductase; 29.8 48 0.0016 22.7 3.3 32 10-44 209-240 (325)
266 3bkw_A MLL3908 protein, S-aden 29.6 25 0.00085 22.3 1.7 36 9-44 106-145 (243)
267 2ras_A Transcriptional regulat 29.6 3.2 0.00011 25.9 -2.6 40 24-63 15-54 (212)
268 3krt_A Crotonyl COA reductase; 29.5 24 0.00081 25.7 1.7 32 9-43 313-344 (456)
269 3mnl_A KSTR, transcriptional r 29.5 2.9 9.9E-05 25.6 -2.8 40 24-63 24-63 (203)
270 2xvm_A Tellurite resistance pr 29.3 28 0.00095 21.3 1.8 35 9-43 96-136 (199)
271 1xr0_B FGFR signalling adaptor 29.1 8.4 0.00029 25.2 -0.7 48 7-65 10-62 (129)
272 3aqt_A Bacterial regulatory pr 29.1 3 0.0001 27.1 -2.9 40 24-63 50-89 (245)
273 3ggd_A SAM-dependent methyltra 29.1 38 0.0013 21.7 2.5 23 22-44 142-164 (245)
274 4a0s_A Octenoyl-COA reductase/ 29.1 45 0.0015 24.0 3.1 32 9-43 305-336 (447)
275 3fbg_A Putative arginate lyase 29.0 30 0.001 24.0 2.1 31 10-42 217-247 (346)
276 2yxe_A Protein-L-isoaspartate 29.0 31 0.0011 21.7 2.0 35 9-45 145-179 (215)
277 3ofk_A Nodulation protein S; N 28.9 30 0.001 21.7 2.0 37 8-44 112-155 (216)
278 2yqz_A Hypothetical protein TT 28.7 32 0.0011 22.1 2.1 34 9-42 103-140 (263)
279 3cjd_A Transcriptional regulat 28.5 4.1 0.00014 25.6 -2.3 40 24-63 16-55 (198)
280 1ri5_A MRNA capping enzyme; me 28.4 26 0.00091 22.9 1.7 38 8-45 131-176 (298)
281 2hxi_A Putative transcriptiona 28.4 14 0.00047 24.5 0.3 42 22-63 31-72 (241)
282 2of7_A Putative TETR-family tr 28.2 4.2 0.00014 26.7 -2.3 40 24-63 52-91 (260)
283 3nrg_A TETR family transcripti 28.2 3.3 0.00011 25.6 -2.7 41 23-63 16-56 (217)
284 2oer_A Probable transcriptiona 28.1 10 0.00035 23.8 -0.4 41 23-63 27-67 (214)
285 2cdc_A Glucose dehydrogenase g 28.1 28 0.00097 24.4 1.9 33 10-43 246-278 (366)
286 2i62_A Nicotinamide N-methyltr 28.1 24 0.00081 22.7 1.4 22 22-43 177-198 (265)
287 1wly_A CAAR, 2-haloacrylate re 28.0 35 0.0012 23.4 2.3 31 10-43 214-244 (333)
288 3pi7_A NADH oxidoreductase; gr 27.9 30 0.001 24.0 2.0 31 10-43 233-263 (349)
289 3sm3_A SAM-dependent methyltra 27.9 30 0.001 21.6 1.8 35 9-43 100-141 (235)
290 1sgm_A Putative HTH-type trans 27.8 2.5 8.6E-05 25.6 -3.3 40 24-63 10-49 (191)
291 1zk8_A Transcriptional regulat 27.4 2.8 9.5E-05 25.5 -3.1 42 22-63 10-51 (183)
292 3r0q_C Probable protein argini 27.4 28 0.00096 24.9 1.8 37 9-45 128-171 (376)
293 2q24_A Putative TETR family tr 26.8 7 0.00024 24.0 -1.4 40 23-63 18-57 (194)
294 1gu7_A Enoyl-[acyl-carrier-pro 26.8 34 0.0012 23.7 2.1 31 10-43 245-275 (364)
295 3jwg_A HEN1, methyltransferase 26.7 39 0.0013 21.2 2.3 36 9-44 101-142 (219)
296 2iu5_A DHAS, YCEG, HTH-type dh 26.7 4 0.00014 25.3 -2.5 41 23-63 16-56 (195)
297 3ni7_A Bacterial regulatory pr 26.7 7.4 0.00025 25.1 -1.3 41 23-63 10-50 (213)
298 2xyq_A Putative 2'-O-methyl tr 26.7 54 0.0019 23.1 3.2 35 9-43 122-171 (290)
299 1vj0_A Alcohol dehydrogenase, 26.6 37 0.0013 24.0 2.3 32 10-43 267-298 (380)
300 2nxc_A L11 mtase, ribosomal pr 26.5 24 0.00081 23.6 1.2 36 8-43 182-218 (254)
301 2id3_A Putative transcriptiona 26.4 5.2 0.00018 25.5 -2.1 40 24-63 44-83 (225)
302 1e3i_A Alcohol dehydrogenase, 26.3 63 0.0022 22.6 3.4 33 10-44 265-298 (376)
303 3rh2_A Hypothetical TETR-like 26.2 4.8 0.00016 25.1 -2.2 40 24-63 7-46 (212)
304 3hem_A Cyclopropane-fatty-acyl 26.2 49 0.0017 22.1 2.8 22 23-44 163-184 (302)
305 2pz9_A Putative regulatory pro 26.1 4.3 0.00015 25.9 -2.5 41 23-63 33-73 (226)
306 2ex4_A Adrenal gland protein A 25.8 34 0.0012 22.0 1.8 35 9-43 145-185 (241)
307 3gaz_A Alcohol dehydrogenase s 25.8 41 0.0014 23.3 2.4 32 9-43 215-246 (343)
308 3d2l_A SAM-dependent methyltra 25.7 32 0.0011 21.8 1.7 35 9-43 95-137 (243)
309 3ou2_A SAM-dependent methyltra 25.5 35 0.0012 21.1 1.8 37 8-44 105-147 (218)
310 2fzw_A Alcohol dehydrogenase c 25.4 69 0.0023 22.3 3.5 32 10-43 260-292 (373)
311 3hta_A EBRA repressor; TETR fa 25.3 5.2 0.00018 25.5 -2.2 41 23-63 31-71 (217)
312 2ibd_A Possible transcriptiona 25.3 5.7 0.00019 24.7 -2.0 40 24-63 18-57 (204)
313 1g6q_1 HnRNP arginine N-methyl 25.2 42 0.0014 23.3 2.3 34 9-42 104-144 (328)
314 1qor_A Quinone oxidoreductase; 25.1 47 0.0016 22.6 2.5 31 10-43 209-239 (327)
315 3bxo_A N,N-dimethyltransferase 25.1 29 0.00098 22.0 1.3 34 9-42 99-140 (239)
316 3ccf_A Cyclopropane-fatty-acyl 25.0 40 0.0014 22.3 2.1 37 9-45 116-156 (279)
317 3s2e_A Zinc-containing alcohol 25.0 37 0.0012 23.4 2.0 32 10-43 232-263 (340)
318 3o60_A LIN0861 protein; PSI, M 24.9 8.8 0.0003 24.3 -1.2 40 24-63 23-63 (185)
319 3cc8_A Putative methyltransfer 24.8 23 0.0008 22.0 0.9 37 9-45 92-132 (230)
320 2c0c_A Zinc binding alcohol de 24.8 42 0.0014 23.5 2.3 31 10-43 231-261 (362)
321 3two_A Mannitol dehydrogenase; 24.8 31 0.0011 23.9 1.6 32 10-43 234-265 (348)
322 2ld4_A Anamorsin; methyltransf 24.7 36 0.0012 20.7 1.8 35 8-42 61-100 (176)
323 3opn_A Putative hemolysin; str 24.7 1.2E+02 0.0041 20.1 4.5 32 11-42 104-136 (232)
324 2hyt_A TETR-family transcripti 24.7 4.8 0.00016 25.0 -2.4 40 24-63 16-55 (197)
325 3dtn_A Putative methyltransfer 24.6 37 0.0013 21.5 1.8 20 25-44 130-149 (234)
326 3bjb_A Probable transcriptiona 24.4 7.6 0.00026 24.5 -1.6 40 24-63 26-65 (207)
327 2oi8_A Putative regulatory pro 24.4 5 0.00017 25.8 -2.5 41 23-63 19-59 (216)
328 3c07_A Putative TETR-family tr 24.2 7.8 0.00027 26.0 -1.6 40 24-63 45-84 (273)
329 3bni_A Putative TETR-family tr 24.2 5.2 0.00018 25.6 -2.4 40 24-63 47-86 (229)
330 2np5_A Transcriptional regulat 24.2 5.6 0.00019 24.9 -2.2 41 23-63 12-52 (203)
331 2g72_A Phenylethanolamine N-me 24.2 30 0.001 23.1 1.4 22 22-43 194-215 (289)
332 2j8z_A Quinone oxidoreductase; 24.1 39 0.0013 23.5 2.0 31 10-43 231-261 (354)
333 3g7r_A Putative transcriptiona 23.8 5.1 0.00017 25.4 -2.5 41 23-63 38-78 (221)
334 2wui_A MEXZ, transcriptional r 23.8 7 0.00024 24.5 -1.8 41 23-63 14-54 (210)
335 2z0f_A Putative phosphoglucomu 23.7 57 0.0019 24.5 3.0 35 9-44 89-130 (524)
336 2gfn_A HTH-type transcriptiona 23.6 6.1 0.00021 25.0 -2.1 41 23-63 12-52 (209)
337 1ud2_A Amylase, alpha-amylase; 23.6 40 0.0014 24.6 2.0 24 16-40 73-97 (480)
338 3bhq_A Transcriptional regulat 23.6 6.2 0.00021 24.7 -2.1 40 24-63 16-55 (211)
339 2jhf_A Alcohol dehydrogenase E 23.5 78 0.0027 22.0 3.5 32 10-43 261-293 (374)
340 1jg1_A PIMT;, protein-L-isoasp 23.3 36 0.0012 22.0 1.6 34 10-45 158-191 (235)
341 1cdo_A Alcohol dehydrogenase; 23.3 79 0.0027 22.0 3.5 32 10-43 262-294 (374)
342 3crj_A Transcription regulator 23.3 4.1 0.00014 25.6 -3.0 40 24-63 18-57 (199)
343 4hg2_A Methyltransferase type 23.2 33 0.0011 23.3 1.5 24 22-45 114-137 (257)
344 1f8f_A Benzyl alcohol dehydrog 23.2 43 0.0015 23.4 2.1 32 10-43 258-289 (371)
345 3nnr_A Transcriptional regulat 23.2 6 0.00021 25.0 -2.2 40 24-63 9-48 (228)
346 1uwv_A 23S rRNA (uracil-5-)-me 23.2 1.1E+02 0.0039 22.1 4.4 34 9-43 355-389 (433)
347 3m33_A Uncharacterized protein 22.9 27 0.00094 22.4 0.9 31 8-40 109-139 (226)
348 3p2e_A 16S rRNA methylase; met 22.9 41 0.0014 22.1 1.8 20 23-42 119-138 (225)
349 2plw_A Ribosomal RNA methyltra 22.8 41 0.0014 20.8 1.7 35 9-43 105-154 (201)
350 2fq4_A Transcriptional regulat 22.8 5.5 0.00019 24.6 -2.4 41 23-63 15-55 (192)
351 3cwq_A Para family chromosome 22.7 30 0.001 22.4 1.1 18 10-27 30-47 (209)
352 1vi0_A Transcriptional regulat 22.7 6.1 0.00021 24.9 -2.3 40 24-63 12-51 (206)
353 3q31_A Carbonic anhydrase; gly 22.7 17 0.00058 25.3 -0.1 60 13-73 132-195 (244)
354 3v6g_A Probable transcriptiona 22.7 6.8 0.00023 25.0 -2.1 41 23-63 17-57 (208)
355 2dq4_A L-threonine 3-dehydroge 22.6 54 0.0019 22.6 2.5 32 10-43 231-262 (343)
356 4b7c_A Probable oxidoreductase 22.6 33 0.0011 23.5 1.3 31 10-43 218-248 (336)
357 2g3b_A Putative TETR-family tr 22.5 5.1 0.00017 25.3 -2.7 40 24-63 7-46 (208)
358 4dup_A Quinone oxidoreductase; 22.4 49 0.0017 23.1 2.2 31 10-43 235-265 (353)
359 1p0f_A NADP-dependent alcohol 22.2 86 0.0029 21.8 3.5 32 10-43 261-293 (373)
360 3vpr_A Transcriptional regulat 22.2 6.7 0.00023 24.0 -2.1 40 24-63 7-46 (190)
361 3eup_A Transcriptional regulat 22.2 3.2 0.00011 25.4 -3.6 40 24-63 15-54 (204)
362 2nx4_A Transcriptional regulat 22.0 5.9 0.0002 24.6 -2.4 40 24-63 14-53 (194)
363 1wzn_A SAM-dependent methyltra 21.9 42 0.0014 21.5 1.7 35 9-43 104-145 (252)
364 3anp_C Transcriptional repress 21.9 5.8 0.0002 24.6 -2.5 40 24-63 13-52 (204)
365 2hku_A A putative transcriptio 21.9 7.1 0.00024 24.4 -2.1 40 23-63 23-62 (215)
366 1dl5_A Protein-L-isoaspartate 21.8 52 0.0018 22.6 2.2 34 9-44 143-176 (317)
367 1ryp_A 20S proteasome; multica 21.6 64 0.0022 21.6 2.6 29 25-53 18-48 (243)
368 3g2m_A PCZA361.24; SAM-depende 21.6 45 0.0015 22.3 1.8 26 23-48 170-195 (299)
369 2eh3_A Transcriptional regulat 21.5 6.5 0.00022 23.9 -2.3 40 24-63 6-45 (179)
370 3g5t_A Trans-aconitate 3-methy 21.5 41 0.0014 22.5 1.6 33 9-42 112-148 (299)
371 3goh_A Alcohol dehydrogenase, 21.5 25 0.00087 23.9 0.6 31 9-42 198-228 (315)
372 3loc_A HTH-type transcriptiona 21.5 5 0.00017 24.6 -2.8 40 24-63 22-61 (212)
373 2iai_A Putative transcriptiona 21.5 4.1 0.00014 26.1 -3.3 41 23-63 33-73 (230)
374 3vib_A MTRR; helix-turn-helix 21.4 6 0.00021 24.7 -2.5 40 24-63 14-53 (210)
375 2j3h_A NADP-dependent oxidored 21.4 34 0.0012 23.5 1.2 31 10-43 225-255 (345)
376 1z0x_A Transcriptional regulat 21.3 7.4 0.00025 25.2 -2.1 41 23-63 8-49 (220)
377 3p8z_A Mtase, non-structural p 21.2 2.2E+02 0.0074 20.7 5.5 57 8-71 142-215 (267)
378 2h6e_A ADH-4, D-arabinose 1-de 21.2 55 0.0019 22.6 2.3 32 10-43 238-269 (344)
379 2xdn_A HTH-type transcriptiona 21.2 6.3 0.00021 24.6 -2.4 40 24-63 15-54 (210)
380 1v3u_A Leukotriene B4 12- hydr 21.1 31 0.001 23.7 0.9 31 10-43 214-244 (333)
381 3ccy_A Putative TETR-family tr 21.1 4.9 0.00017 24.9 -2.9 41 23-63 17-57 (203)
382 3bgv_A MRNA CAP guanine-N7 met 21.0 38 0.0013 22.9 1.4 24 23-46 135-158 (313)
383 1wg8_A Predicted S-adenosylmet 21.0 39 0.0013 24.4 1.5 21 23-43 213-233 (285)
384 2zcx_A SCO7815, TETR-family tr 20.9 7 0.00024 25.4 -2.3 41 23-63 26-66 (231)
385 3geu_A Intercellular adhesion 20.7 4.1 0.00014 24.9 -3.3 40 24-63 7-46 (189)
386 1vbf_A 231AA long hypothetical 20.6 43 0.0015 21.2 1.5 35 9-45 133-167 (231)
387 3gqv_A Enoyl reductase; medium 20.6 91 0.0031 21.8 3.4 32 10-43 231-263 (371)
388 2qe6_A Uncharacterized protein 20.5 68 0.0023 21.7 2.6 23 22-44 175-197 (274)
389 3t8r_A Staphylococcus aureus C 20.5 44 0.0015 20.9 1.5 23 18-40 37-59 (143)
390 3khk_A Type I restriction-modi 20.4 55 0.0019 25.1 2.3 38 24-61 376-413 (544)
391 3fiw_A Putative TETR-family tr 20.4 5.6 0.00019 25.8 -2.9 41 23-63 28-68 (211)
392 2gen_A Probable transcriptiona 20.3 7.2 0.00024 24.3 -2.3 40 24-63 11-50 (197)
393 3q7e_A Protein arginine N-meth 20.2 75 0.0026 22.3 2.9 35 8-42 131-172 (349)
394 3him_A Probable transcriptiona 20.2 3 0.0001 25.6 -4.0 40 24-63 20-59 (211)
395 2kup_A Fibroblast growth facto 20.1 22 0.00076 23.6 0.0 48 7-65 17-69 (146)
No 1
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=99.68 E-value=9.4e-18 Score=126.58 Aligned_cols=67 Identities=43% Similarity=0.784 Sum_probs=64.3
Q ss_pred CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCC
Q psy4127 8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEM 74 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~ 74 (75)
.+.||+|++||||++.+|+++|++.+++||+|++|+||+++|+|+.+..|+|+||..|.+.+++||+
T Consensus 123 ~~~fD~V~lDP~g~~~~~l~~a~~~Lk~gGll~~t~t~~~~l~g~~~~~~~rkYg~~p~r~~~~~e~ 189 (392)
T 3axs_A 123 GFGFDYVDLDPFGTPVPFIESVALSMKRGGILSLTATDTAPLSGTYPKTCMRRYMARPLRNEFKHEV 189 (392)
T ss_dssp SSCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHH
T ss_pred CCCCcEEEECCCcCHHHHHHHHHHHhCCCCEEEEEecchhhhccccHHHHHHHhCCcccccccccch
Confidence 3479999999999999999999999999999999999999999999999999999999999999985
No 2
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=99.68 E-value=1.2e-17 Score=124.54 Aligned_cols=66 Identities=53% Similarity=0.897 Sum_probs=63.7
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccCCCCccCC
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHEM 74 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E~ 74 (75)
+.||+|++||||++.+||++|++.+++||+|++|+||+++|+|+++..|+|+||..|.+++++||+
T Consensus 130 ~~fD~I~lDP~~~~~~~l~~a~~~lk~gG~l~vt~td~~~l~~~~~~~~~~~yg~~p~~~~~~~e~ 195 (378)
T 2dul_A 130 RYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPLRGELCHEV 195 (378)
T ss_dssp TCEEEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECCHHHHTTSSHHHHHHHHSSBCCCSTTHHHH
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHhcCCCCEEEEEeecchhhccccHHHHHHHccCCCcccccccch
Confidence 479999999999999999999999999999999999999999999999999999999999999885
No 3
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=95.13 E-value=0.016 Score=41.55 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEE
Q psy4127 8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLV 41 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~v 41 (75)
++.||.|-+||-.++..||+.|++++++||+|.+
T Consensus 190 ~~~~D~Vi~~~p~~~~~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 190 ENIADRILMGYVVRTHEFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEE
T ss_pred ccCCCEEEECCCCcHHHHHHHHHHHcCCCCEEEE
Confidence 4569999999877789999999999999999965
No 4
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=92.92 E-value=0.1 Score=36.19 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=+||-.+...|++.+.+.+++||++.+...-
T Consensus 190 ~~~fD~Vi~~~p~~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 190 ENIADRILMGYVVRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp CSCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCccEEEECCchhHHHHHHHHHHHCCCCeEEEEEEee
Confidence 45799999999888889999999999999999886543
No 5
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=92.67 E-value=0.11 Score=35.90 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=33.7
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=+||--....+++.+++.++.||++.+++.-.
T Consensus 185 ~~~D~Vi~d~p~~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 185 DVADRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp TCEEEEEECCCSSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCceEEEECCcccHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 46999999998668899999999999999999988754
No 6
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=91.96 E-value=0.12 Score=37.33 Aligned_cols=42 Identities=31% Similarity=0.341 Sum_probs=33.3
Q ss_pred CCCCceeeeCC--CCCc------------hhhHHHHHHhcccCcEEEEEecCcccc
Q psy4127 8 GRHFDAIDLDP--FGNP------------TRFLDAAVSSLRDGGLLLVTCTDMAVL 49 (75)
Q Consensus 8 ~~~fD~IDlDP--fGSp------------~pfldsA~~av~~gGll~vTaTD~a~L 49 (75)
.+.||+|=+|| ||.. ..++..+.+.+++||++.++++-...+
T Consensus 223 ~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~ 278 (332)
T 2igt_A 223 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRA 278 (332)
T ss_dssp TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTS
T ss_pred CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCC
Confidence 45799999998 5532 478999999999999988888765544
No 7
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=89.49 E-value=0.37 Score=29.46 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=31.7
Q ss_pred CCCceeeeCC-C-CCchhhHHHHH--HhcccCcEEEEEecCcccc
Q psy4127 9 RHFDAIDLDP-F-GNPTRFLDAAV--SSLRDGGLLLVTCTDMAVL 49 (75)
Q Consensus 9 ~~fD~IDlDP-f-GSp~pfldsA~--~av~~gGll~vTaTD~a~L 49 (75)
+.||+|=.|| | +....+++... +.+++||.+.++......+
T Consensus 109 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~ 153 (171)
T 1ws6_A 109 ERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPKDLYL 153 (171)
T ss_dssp CCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEETTSCC
T ss_pred CceEEEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCCccCC
Confidence 3699999997 7 55667787777 8899999999877655443
No 8
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=88.04 E-value=0.46 Score=34.32 Aligned_cols=37 Identities=32% Similarity=0.597 Sum_probs=29.4
Q ss_pred CCCCceeeeCC--CCCc-----------hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP--FGNP-----------TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP--fGSp-----------~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|| |+.. ..++..+.+.+++||+|.+++-
T Consensus 277 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 277 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 45799999998 4421 3588899999999999888653
No 9
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=87.52 E-value=0.53 Score=33.54 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=29.6
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+||--....+++.+++.++.||+|.+.+-
T Consensus 257 ~~fD~Vi~dpP~~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 257 VKGNRVIMNLPKFAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp CCEEEEEECCTTTGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcEEEECCcHhHHHHHHHHHHHcCCCCEEEEEEe
Confidence 469999999555567999999999999998877543
No 10
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=86.82 E-value=1.2 Score=28.27 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=28.9
Q ss_pred CCCCceeeeCC-CCCc----hhhHHHHHH--hcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDP-FGNP----TRFLDAAVS--SLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDP-fGSp----~pfldsA~~--av~~gGll~vTaTD 45 (75)
.+.||+|=.|| |... ..++....+ .++.||++.+....
T Consensus 111 ~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 111 TSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp SSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 46799999995 8763 456666666 89999999997643
No 11
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=86.46 E-value=0.58 Score=32.52 Aligned_cols=37 Identities=19% Similarity=0.463 Sum_probs=30.2
Q ss_pred CCCCceeeeCCCCC--c------hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPFGN--P------TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPfGS--p------~pfldsA~~av~~gGll~vTaT 44 (75)
++.||+|=+|++-. | ..|++.+.+.+++||++.+...
T Consensus 146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 45799999998752 1 5799999999999999998753
No 12
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=85.24 E-value=1.2 Score=30.19 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=30.1
Q ss_pred CCCCceeeeCC-CCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP-FGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP-fGSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|. ......|++.+.+.++.||+|.+.-+
T Consensus 154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 35799999886 34457899999999999999988544
No 13
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=85.20 E-value=0.61 Score=34.51 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=26.3
Q ss_pred CCceeeeCCCCC-------------chhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGN-------------PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGS-------------p~pfldsA~~av~~gGll~vTa 43 (75)
.||+|=+||=-- -..++..|++.+++||+|.+.+
T Consensus 280 ~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s 326 (393)
T 4dmg_A 280 PFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS 326 (393)
T ss_dssp CEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 499999998210 1378999999999999997443
No 14
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=85.11 E-value=0.68 Score=32.77 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=28.3
Q ss_pred CCCCceeeeCCC---CCc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPF---GNP-----TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPf---GSp-----~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|++ |.+ ..|++.+.+.++.||++.+.+.
T Consensus 155 ~~~fDvIi~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~~ 199 (294)
T 3adn_A 155 SQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp CCCEEEEEECC----------CCHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCccEEEECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEecC
Confidence 457999988765 432 5699999999999999998763
No 15
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=85.02 E-value=1.5 Score=27.94 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=30.4
Q ss_pred CCCceeeeCC-CCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDP-FGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDP-fGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=++. ++.+..+++.+.+.++.||.+.++..
T Consensus 107 ~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 107 PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence 4699998876 56678899999999999999999754
No 16
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=84.87 E-value=0.64 Score=31.88 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=29.3
Q ss_pred cCCCCceeeeCC-CCCc-----------------hhhHHHHHHhcccCcEEEEEecCc
Q psy4127 7 RGRHFDAIDLDP-FGNP-----------------TRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 7 ~~~~fD~IDlDP-fGSp-----------------~pfldsA~~av~~gGll~vTaTD~ 46 (75)
..+.||+|=+|| |+.. ...|..+.+.++++|.+.|...|-
T Consensus 20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~ 77 (260)
T 1g60_A 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPF 77 (260)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHH
T ss_pred cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcH
Confidence 345799999997 7755 134455567899999999987654
No 17
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=84.23 E-value=2.1 Score=27.84 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.|+ +.|..+++.+.+.++.||.+.+..-
T Consensus 157 ~~~D~v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 157 GIFHAAFVDV-REPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TCBSEEEECS-SCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CcccEEEECC-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4699998876 4688999999999999999988664
No 18
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=83.87 E-value=0.94 Score=30.29 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=29.8
Q ss_pred CCCCceeeeCCCC-CchhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDPFG-NPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDPfG-Sp~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=+|+-- ....|++.+.+.++.||+|.+.-+.
T Consensus 127 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~ 165 (221)
T 3dr5_A 127 NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADAL 165 (221)
T ss_dssp TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 4679999988643 3346999999999999999985443
No 19
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=83.73 E-value=0.79 Score=29.69 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=28.9
Q ss_pred CCCceeeeCCC-CCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPF-GNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPf-GSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=+|+- .....+++.+.+.++.||+|.+.-
T Consensus 144 ~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 144 GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp TCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 57999999974 334679999999999999999854
No 20
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=83.18 E-value=2.4 Score=25.94 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=28.8
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+..--....+++.+.+.++.||.+.++.-
T Consensus 93 ~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence 579999876644446799999999999999998753
No 21
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=83.16 E-value=0.78 Score=29.66 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=30.5
Q ss_pred CCCceeeeCCCCC-chhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGN-PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGS-p~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=+|+--. ...+++.+.+.++.||+|.+.-..
T Consensus 139 ~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 139 WQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 5799999998643 567899999999999999986554
No 22
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=82.58 E-value=1.4 Score=31.28 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=31.3
Q ss_pred cCCCCceeeeCC-CCCc-----------------hhhHHHHHHhcccCcEEEEEecCc
Q psy4127 7 RGRHFDAIDLDP-FGNP-----------------TRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 7 ~~~~fD~IDlDP-fGSp-----------------~pfldsA~~av~~gGll~vTaTD~ 46 (75)
..+.||.|=+|| |+.. .+.|..+.+.+++||.|++...|.
T Consensus 30 ~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 30 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 356799999996 8764 244566678899999999998875
No 23
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=82.30 E-value=1.3 Score=29.89 Aligned_cols=35 Identities=29% Similarity=0.592 Sum_probs=30.0
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+|+ ..|..+|+.+.+.++.||.|.+...
T Consensus 180 ~~~D~V~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 180 KDVDALFLDV-PDPWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CSEEEEEECC-SCGGGTHHHHHHHEEEEEEEEEEES
T ss_pred CccCEEEECC-cCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 4699999987 4578999999999999999988653
No 24
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=82.27 E-value=1.1 Score=32.57 Aligned_cols=39 Identities=31% Similarity=0.528 Sum_probs=31.6
Q ss_pred CCCCceeeeCCCCC---c-----hhhHHHHHHhcccCcEEEEEecCc
Q psy4127 8 GRHFDAIDLDPFGN---P-----TRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 8 ~~~fD~IDlDPfGS---p-----~pfldsA~~av~~gGll~vTaTD~ 46 (75)
.+.||+|=+|.|.. | ..|++.+.+.++.||++.+...+.
T Consensus 157 ~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 157 PASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp TTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred CCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 46799999987643 2 478999999999999999888653
No 25
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=82.10 E-value=0.85 Score=31.98 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=28.0
Q ss_pred CCCCceeeeCCCCC----c-----hhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDPFGN----P-----TRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDPfGS----p-----~pfldsA~~av~~gGll~vTa 43 (75)
.+.||+|=+|++-. + ..|++.+.+.+++||++.+..
T Consensus 161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 45799999887531 1 578999999999999999974
No 26
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=82.00 E-value=1 Score=33.77 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=28.4
Q ss_pred CCCCceeeeCCC----C-Cc-----hhhHHHH----HHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDPF----G-NP-----TRFLDAA----VSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDPf----G-Sp-----~pfldsA----~~av~~gGll~vTaTD 45 (75)
.++||+|=+||+ | .| ..|+... .+.+++||++.+-+.-
T Consensus 265 ~~~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s 316 (364)
T 2qfm_A 265 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC 316 (364)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred CCCceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEcCC
Confidence 467999999965 3 23 4677766 7999999999887643
No 27
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=81.95 E-value=1.5 Score=28.82 Aligned_cols=36 Identities=25% Similarity=0.483 Sum_probs=30.3
Q ss_pred CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|+ ..+..+++.+.+.++.||.+.+...
T Consensus 160 ~~~~D~v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 195 (255)
T 3mb5_A 160 EENVDHVILDL-PQPERVVEHAAKALKPGGFFVAYTP 195 (255)
T ss_dssp CCSEEEEEECS-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCcCEEEECC-CCHHHHHHHHHHHcCCCCEEEEEEC
Confidence 34699999987 4577899999999999999998754
No 28
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=81.13 E-value=1.9 Score=28.90 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=29.4
Q ss_pred CCCceeeeCCCC-CchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFG-NPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfG-Sp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=+|.-- ...+|++.+.+.+|.||+|.+..+.
T Consensus 135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 135 PAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred CCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 379999888643 2247899999999999999987654
No 29
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=80.95 E-value=2.1 Score=27.62 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.9
Q ss_pred CCCceeeeCCCCC-chhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLDPFGN-PTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlDPfGS-p~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=+|+--. ...+++.+.+.++.||+|.+.....
T Consensus 132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 4699999997632 2578999999999999999865543
No 30
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=80.85 E-value=1.3 Score=31.29 Aligned_cols=37 Identities=16% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCceeeeCCCCCc-----------hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPFGNP-----------TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp-----------~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|++-.- ..|++.+.+.++.||++.+...
T Consensus 149 ~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 457999998876421 4789999999999999999754
No 31
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=80.80 E-value=2.6 Score=27.45 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=29.6
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=+++-..+. +++.+.+.++.||.+.++....
T Consensus 121 ~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 121 PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 369999998843333 9999999999999999976543
No 32
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=80.29 E-value=1.9 Score=28.68 Aligned_cols=40 Identities=25% Similarity=0.459 Sum_probs=29.9
Q ss_pred CCCCceeee---CCCCCch---------hhHHHHHHhcccCcEEEEEecCccc
Q psy4127 8 GRHFDAIDL---DPFGNPT---------RFLDAAVSSLRDGGLLLVTCTDMAV 48 (75)
Q Consensus 8 ~~~fD~IDl---DPfGSp~---------pfldsA~~av~~gGll~vTaTD~a~ 48 (75)
.+.||.|-+ ||+-... .|++.+.+.+|.||.+.+. ||...
T Consensus 103 ~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~-td~~~ 154 (218)
T 3dxy_A 103 DNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA-TDWEP 154 (218)
T ss_dssp TTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE-ESCHH
T ss_pred CCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE-eCCHH
Confidence 456888887 7765332 4999999999999999885 55443
No 33
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=80.28 E-value=1.4 Score=28.79 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.9
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+|+ ..+..+|+.+.+.++.||.+.+...
T Consensus 165 ~~~D~v~~~~-~~~~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 165 AAYDGVALDL-MEPWKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp TCEEEEEEES-SCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCcCEEEECC-cCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 4699998876 5678999999999999999998764
No 34
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=80.19 E-value=1.1 Score=34.04 Aligned_cols=37 Identities=35% Similarity=0.571 Sum_probs=27.4
Q ss_pred CCCCceeeeCCC--CCch------------------------hhHHHHHHhcccCcEE-EEEec
Q psy4127 8 GRHFDAIDLDPF--GNPT------------------------RFLDAAVSSLRDGGLL-LVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPf--GSp~------------------------pfldsA~~av~~gGll-~vTaT 44 (75)
.+.||.|=+||= |+-+ .+|+.|.+.||.||.| +.|||
T Consensus 173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 357999999973 2111 6799999999999965 45665
No 35
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=80.06 E-value=1 Score=32.55 Aligned_cols=37 Identities=35% Similarity=0.561 Sum_probs=29.1
Q ss_pred CCCCceeeeCC--CC-----------CchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP--FG-----------NPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP--fG-----------Sp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|| |+ ....++..+++.++.||+|.+++-
T Consensus 291 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 35799999997 22 124788899999999999988653
No 36
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=80.00 E-value=1.3 Score=30.67 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=28.8
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=+|.. .|..|+..+.+.++.||++.+..
T Consensus 138 ~~fD~Ii~d~~-dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 138 KKYDLIFCLQE-PDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp CCEEEEEESSC-CCHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhCCEEEECCC-ChHHHHHHHHHhcCCCcEEEEEc
Confidence 46999999964 37779999999999999999864
No 37
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=79.63 E-value=0.74 Score=33.23 Aligned_cols=36 Identities=33% Similarity=0.566 Sum_probs=27.5
Q ss_pred CCCCceeeeCC--CCC-----------chhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDP--FGN-----------PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDP--fGS-----------p~pfldsA~~av~~gGll~vTa 43 (75)
.+.||+|=+|| |+. ...++..+++.+++||+|.+++
T Consensus 287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 335 (396)
T 2as0_A 287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS 335 (396)
T ss_dssp TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 45799999998 331 3468889999999999766554
No 38
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=78.95 E-value=1.9 Score=28.64 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCCceeeeCC-CCCc------------hhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLDP-FGNP------------TRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlDP-fGSp------------~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=.+| |+.. ..++..+.+.++.||+|.++....
T Consensus 167 ~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 217 (250)
T 1o9g_A 167 SAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRSR 217 (250)
T ss_dssp CCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcch
Confidence 3799998875 4422 278888999999999999955443
No 39
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=78.94 E-value=1.5 Score=31.32 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCCCceeeeCCCC---Cc-----hhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDPFG---NP-----TRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDPfG---Sp-----~pfldsA~~av~~gGll~vTa 43 (75)
++.||+|=+|++. .+ ..|+..+.+.++.||+|.+..
T Consensus 179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 4579999988853 11 588999999999999999976
No 40
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=78.90 E-value=1.7 Score=31.27 Aligned_cols=40 Identities=20% Similarity=0.186 Sum_probs=29.6
Q ss_pred cCCCCceeeeCC-CCCc--------------hhhHHHHHHhcccCcEEEEEecCc
Q psy4127 7 RGRHFDAIDLDP-FGNP--------------TRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 7 ~~~~fD~IDlDP-fGSp--------------~pfldsA~~av~~gGll~vTaTD~ 46 (75)
..+.+|+|=+|| |+.. .+.|..+.+.++++|.|+|...+-
T Consensus 55 ~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~ 109 (319)
T 1eg2_A 55 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ 109 (319)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 345799999997 7754 234455567799999999986654
No 41
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=78.56 E-value=1.5 Score=30.80 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=28.6
Q ss_pred CCCCceeeeCCCC---Cc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPFG---NP-----TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPfG---Sp-----~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|++- .+ ..|+..+.+.++.||++.+...
T Consensus 167 ~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 211 (304)
T 3bwc_A 167 DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE 211 (304)
T ss_dssp TTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 4579999887753 11 4789999999999999999753
No 42
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=78.51 E-value=1 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=29.2
Q ss_pred CCCCceeeeCC-CCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP-FGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP-fGSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|. ......|++.+.+.++.||+|.+.-+
T Consensus 140 ~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 140 DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECT
T ss_pred cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeC
Confidence 45799998886 34446789999999999999988443
No 43
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=78.37 E-value=1.8 Score=30.04 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=29.3
Q ss_pred CCCCceeeeCCC---CCc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPF---GNP-----TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPf---GSp-----~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|++ |.+ ..|++.+.+.+++||++.+.+.
T Consensus 149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 457999988764 322 4889999999999999998854
No 44
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=78.33 E-value=2.2 Score=30.04 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=24.2
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNT 53 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~ 53 (75)
.|+..+++.++.||.+++..++. .+.+..
T Consensus 237 ~~l~~~~~~Lk~gG~~~~v~p~~-~~~~~~ 265 (344)
T 2f8l_A 237 LFIEQGMRYTKPGGYLFFLVPDA-MFGTSD 265 (344)
T ss_dssp HHHHHHHHTEEEEEEEEEEEEGG-GGGSTT
T ss_pred HHHHHHHHHhCCCCEEEEEECch-hcCCch
Confidence 58999999999999999999886 555544
No 45
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=78.04 E-value=0.36 Score=31.50 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=34.7
Q ss_pred CC-CceeeeCCC-C--CchhhHHHHH--HhcccCcEEEEEecCcc--cccCCChhHHHHHhcCccc
Q psy4127 9 RH-FDAIDLDPF-G--NPTRFLDAAV--SSLRDGGLLLVTCTDMA--VLCGNTPETCYVKYNAVSL 66 (75)
Q Consensus 9 ~~-fD~IDlDPf-G--Sp~pfldsA~--~av~~gGll~vTaTD~a--~L~G~~~~~~~r~Yg~~~~ 66 (75)
+. ||+|=+||- . ....++.... +.+++||++.++..... .+.........++||...+
T Consensus 123 ~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~yG~~~~ 188 (201)
T 2ift_A 123 QPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDKPLITPENWTLLKEKTTGIVSY 188 (201)
T ss_dssp SCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSSCCCCCTTEEEEEEEEETTEEE
T ss_pred CCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCCCccccchhHHHHHHhcCCEEE
Confidence 56 999999864 3 2344555552 34899999998766544 1122222334466776543
No 46
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=78.02 E-value=1.8 Score=29.91 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=28.9
Q ss_pred CCCCceeeeCCCC---C-----chhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDPFG---N-----PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDPfG---S-----p~pfldsA~~av~~gGll~vTa 43 (75)
.+.||+|=+|++- . ...|++.+.+.++.||++.+..
T Consensus 150 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 150 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 4579999988863 1 2578999999999999999874
No 47
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=77.96 E-value=2 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCCceeeeCCC-CCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPF-GNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPf-GSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.++. .....+++.+.+.++.||.+.++...
T Consensus 99 ~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 99 PDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp CCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred CCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 46898877754 66789999999999999999987543
No 48
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=77.95 E-value=2.1 Score=31.08 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=30.4
Q ss_pred cCCCCceeeeCCC---CCc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127 7 RGRHFDAIDLDPF---GNP-----TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 7 ~~~~fD~IDlDPf---GSp-----~pfldsA~~av~~gGll~vTaT 44 (75)
.+++||+|=+|.+ |.+ .+|++.+-+++++||++++.+.
T Consensus 154 ~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 154 TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 4568999988865 432 4799999999999999998764
No 49
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=77.78 E-value=2.3 Score=25.43 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=28.4
Q ss_pred CCCCceeeeCC----CCCc-----------hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP----FGNP-----------TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP----fGSp-----------~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=.|+ +|.+ ..++..+.+.+++||.+.++..
T Consensus 86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 35799988764 3333 5789999999999999998654
No 50
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=77.77 E-value=1.5 Score=34.74 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCCCceeeeCC--CCC-------------chhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCc
Q psy4127 8 GRHFDAIDLDP--FGN-------------PTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAV 64 (75)
Q Consensus 8 ~~~fD~IDlDP--fGS-------------p~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~ 64 (75)
.+.||+|-+|| |+. -..++..|.+.+++||+|.+++.-.. ..-....+.++|..
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~---~~~~~~~l~~~g~~ 675 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRG---FRMDLDGLAKLGLK 675 (703)
T ss_dssp CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTT---CCCCHHHHHHTTEE
T ss_pred CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc---cccCHHHHHHcCCc
Confidence 45799999999 331 12358899999999999996654321 12236677777754
No 51
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=77.66 E-value=4.5 Score=26.40 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=28.8
Q ss_pred CCCCceeee---CCCCC---------chhhHHHHHHhcccCcEEEEEecCcc
Q psy4127 8 GRHFDAIDL---DPFGN---------PTRFLDAAVSSLRDGGLLLVTCTDMA 47 (75)
Q Consensus 8 ~~~fD~IDl---DPfGS---------p~pfldsA~~av~~gGll~vTaTD~a 47 (75)
.+.||.|-+ ||+.. ...||+.+.+.++.||.|.+. ||..
T Consensus 106 ~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~-td~~ 156 (213)
T 2fca_A 106 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK-TDNR 156 (213)
T ss_dssp TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE-ESCH
T ss_pred cCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE-eCCH
Confidence 346888866 56543 246899999999999999986 4543
No 52
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=77.08 E-value=1.4 Score=29.19 Aligned_cols=36 Identities=31% Similarity=0.528 Sum_probs=29.0
Q ss_pred CCCceeeeCCC-CCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPF-GNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPf-GSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+|.- .....+++.+.+.++.||+|.+.-+
T Consensus 147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 57999988865 2346789999999999999998543
No 53
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=76.86 E-value=1.9 Score=29.27 Aligned_cols=35 Identities=20% Similarity=0.534 Sum_probs=26.9
Q ss_pred CCCCceeeeC-CCCCc---------------------hhhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLD-PFGNP---------------------TRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlD-PfGSp---------------------~pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=.+ ||... ..++..+.+.++.||.+.+.
T Consensus 113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 169 (260)
T 2ozv_A 113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLI 169 (260)
T ss_dssp TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 3579999998 57543 47899999999999999874
No 54
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=76.32 E-value=1.4 Score=28.02 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=30.6
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=...+..+..+++.+.+.+++||.+.+.
T Consensus 131 ~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 131 PPFDGVISRAFASLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp SCEEEEECSCSSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred CCcCEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 5799998888888888999999999999999987
No 55
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=75.84 E-value=2.8 Score=27.35 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCCCceeeeCCCCCc---hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPFGNP---TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp---~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=.|+- .+ ..++..+.+.++.||.+.++.-
T Consensus 145 ~~~~D~V~~~~~-~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 145 IAMVDVIFADVA-QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp CCCEEEEEECCC-CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcEEEEEEcCC-CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 357999999987 45 3458889999999999999643
No 56
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=74.92 E-value=4.7 Score=25.93 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=33.8
Q ss_pred CCCCceeeeCCCCCc-------------hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhc
Q psy4127 8 GRHFDAIDLDPFGNP-------------TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYN 62 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp-------------~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg 62 (75)
.+.||.|-+++ -.| ..+++.+.+.++.||.+.+. ||...+. ..-...+.+.|
T Consensus 109 ~~~~D~i~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~-~~~~~~~~~~g 173 (214)
T 1yzh_A 109 DGEIDRLYLNF-SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK-TDNRGLF-EYSLVSFSQYG 173 (214)
T ss_dssp TTCCSEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE-ESCHHHH-HHHHHHHHHHT
T ss_pred CCCCCEEEEEC-CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE-eCCHHHH-HHHHHHHHHCC
Confidence 34689998873 222 36999999999999999885 5543322 12233455555
No 57
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=74.39 E-value=1.5 Score=29.65 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=29.4
Q ss_pred CCCCceeeeCCCCC-chhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDPFGN-PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDPfGS-p~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=+|.--. ...|++.+.+.++.||+|.+.-+.
T Consensus 134 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 134 EHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp SSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred CCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 36799998886532 356899999999999999985443
No 58
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=74.36 E-value=2.1 Score=30.28 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCCCceeeeCCCCC--------chhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDPFGN--------PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDPfGS--------p~pfldsA~~av~~gGll~vTa 43 (75)
++.||+|=+|++-. ...|+..+.+.+++||+|.+..
T Consensus 166 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 166 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 45799999887642 1358999999999999999876
No 59
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=74.04 E-value=2.2 Score=31.02 Aligned_cols=36 Identities=19% Similarity=0.461 Sum_probs=26.0
Q ss_pred CCCceeeeCCC--C----Cc-------hhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPF--G----NP-------TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPf--G----Sp-------~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+||= + .- ..++..+.+.+++||+|.+++-
T Consensus 284 ~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 284 LTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp CCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 47999999972 2 11 1256677899999999988763
No 60
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=73.58 E-value=1.2 Score=27.31 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=28.6
Q ss_pred CCCCceeeeCC-CCC----chhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDP-FGN----PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDP-fGS----p~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=.+| |.. ...+++.+.+.+++||.+.++.-.
T Consensus 117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 34699998876 222 247888888999999999987644
No 61
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=73.54 E-value=3.2 Score=26.84 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=26.7
Q ss_pred CCCceeeeCCC-C--CchhhHHHHHHh--cccCcEEEEEecCcc
Q psy4127 9 RHFDAIDLDPF-G--NPTRFLDAAVSS--LRDGGLLLVTCTDMA 47 (75)
Q Consensus 9 ~~fD~IDlDPf-G--Sp~pfldsA~~a--v~~gGll~vTaTD~a 47 (75)
+.||+|=+||- . ....+++...+. ++.||++.++..-..
T Consensus 121 ~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~ 164 (202)
T 2fpo_A 121 TPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN 164 (202)
T ss_dssp CCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred CCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence 57999999963 4 334556555443 899999988765433
No 62
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=73.15 E-value=2.3 Score=28.34 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=27.1
Q ss_pred CCCCceeeeCCCCCc---------hhhHHHHHHhcccCcEEEE
Q psy4127 8 GRHFDAIDLDPFGNP---------TRFLDAAVSSLRDGGLLLV 41 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp---------~pfldsA~~av~~gGll~v 41 (75)
.+.||.|=.|++-+. ..|++-+.+.||.||.+.+
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 456999999988653 3467778899999999876
No 63
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=73.08 E-value=2 Score=28.38 Aligned_cols=35 Identities=9% Similarity=0.276 Sum_probs=31.1
Q ss_pred CCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=.+.+..+..+++.+.+.++.||.+.+.
T Consensus 139 ~~~fD~V~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 139 RESYDIVTARAVARLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp TTCEEEEEEECCSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCccEEEEeccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 35799999888888899999999999999999885
No 64
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=72.79 E-value=1.8 Score=28.89 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCCCceeeeCCCC-CchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPFG-NPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPfG-Sp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=+|.-- ....|++.+.+.++.||+|.+.-+
T Consensus 145 ~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 145 EGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp TTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 3579999998532 235789999999999999988543
No 65
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=72.63 E-value=3 Score=29.66 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=29.0
Q ss_pred CCCCceeeeCCC---CCc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPF---GNP-----TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPf---GSp-----~pfldsA~~av~~gGll~vTaT 44 (75)
++.||+|=+|++ |.+ ..|++.+.+.+++||++.+...
T Consensus 187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 457999987764 322 5789999999999999999753
No 66
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=72.51 E-value=3.5 Score=29.68 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=28.6
Q ss_pred CCCCceeeeCCC---CC-----chhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDPF---GN-----PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDPf---GS-----p~pfldsA~~av~~gGll~vTa 43 (75)
.+.||+|=+|++ |. ...|+..+.+.++.||+|.+.+
T Consensus 192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 357999998876 31 1468999999999999999863
No 67
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=71.98 E-value=2.8 Score=28.05 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=26.5
Q ss_pred CCCCceeeeCC-C------CCch-----------------hhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLDP-F------GNPT-----------------RFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlDP-f------GSp~-----------------pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=.|| | |... .+++.+.+.++.||.+.+.
T Consensus 117 ~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 117 KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 46799999874 4 3333 4999999999999999995
No 68
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=71.82 E-value=4.8 Score=23.90 Aligned_cols=36 Identities=22% Similarity=0.219 Sum_probs=26.1
Q ss_pred eeeCCCCCchhhHH--HHHHhcc-cCcEEEEEecCcccc
Q psy4127 14 IDLDPFGNPTRFLD--AAVSSLR-DGGLLLVTCTDMAVL 49 (75)
Q Consensus 14 IDlDPfGSp~pfld--sA~~av~-~gGll~vTaTD~a~L 49 (75)
||+=-.-+|.|+|. .|++.+. .|..|-|.++|..+.
T Consensus 4 lD~rGl~CP~Pvl~~kkal~~l~~~G~~L~V~~dd~~a~ 42 (87)
T 3hz7_A 4 IDALGQVCPIPVIRAKKALAELGEAGGVVTVLVDNDISR 42 (87)
T ss_dssp EECTTCCTTHHHHHHHHHHHTTGGGCCEEEEEESSHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHhccCCCCEEEEEECCccHH
Confidence 33333348899886 3566676 899999999998764
No 69
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=71.05 E-value=2.5 Score=31.88 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=26.3
Q ss_pred CCCCceeeeCCC---------CCc-----hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDPF---------GNP-----TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPf---------GSp-----~pfldsA~~av~~gGll~vTaT 44 (75)
.++||+|=+|.| |-+ ..|++.+-+++++||++...+.
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 357999977743 322 2578888899999999977543
No 70
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=70.93 E-value=4.1 Score=27.51 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=29.4
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+|+- .+..+|+.+.+.++.||.|.++.-
T Consensus 178 ~~fD~Vi~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 178 QMYDAVIADIP-DPWNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp CCEEEEEECCS-CGGGSHHHHHHTEEEEEEEEEEES
T ss_pred CCccEEEEcCc-CHHHHHHHHHHHcCCCCEEEEEeC
Confidence 46999988764 577899999999999999998753
No 71
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=70.50 E-value=2.7 Score=28.75 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCCCceeeeCC-C---CC------------------chhhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLDP-F---GN------------------PTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlDP-f---GS------------------p~pfldsA~~av~~gGll~vT 42 (75)
.+.||.|=+|| + |. ...+|+.+.+.+|.||.|.++
T Consensus 154 ~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~s 210 (274)
T 3ajd_A 154 EIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYS 210 (274)
T ss_dssp TCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 45799999994 3 21 157899999999999987664
No 72
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=70.49 E-value=1.8 Score=31.90 Aligned_cols=21 Identities=29% Similarity=0.681 Sum_probs=17.5
Q ss_pred hhHHHHHHhcccCc-EEEEEec
Q psy4127 24 RFLDAAVSSLRDGG-LLLVTCT 44 (75)
Q Consensus 24 pfldsA~~av~~gG-ll~vTaT 44 (75)
..|+.|++.||.|| |+|.|||
T Consensus 265 ~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 265 QLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp HHHHHHHHTEEEEEEEEEEESC
T ss_pred HHHHHHHhcCCCCcEEEEEeCC
Confidence 45788999999998 5688887
No 73
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=70.23 E-value=2.2 Score=27.38 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=26.3
Q ss_pred CceeeeCC-CCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 11 FDAIDLDP-FGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 11 fD~IDlDP-fGSp~pfldsA~~av~~gGll~vTa 43 (75)
||+|=+|. ......+++.+.+.++.||+|.+.-
T Consensus 127 fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 127 IDILFMDCDVFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 99988874 2344678999999999999998843
No 74
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=70.03 E-value=2.3 Score=29.16 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=26.1
Q ss_pred CCCcee-------eeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAI-------DLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~I-------DlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+| .+| +..+|..+.+.+|.||.+.++.-
T Consensus 184 ~~fD~V~~~~~l~~~~----~~~~l~~~~~~LkpgG~l~~~~~ 222 (312)
T 3vc1_A 184 GAVTASWNNESTMYVD----LHDLFSEHSRFLKVGGRYVTITG 222 (312)
T ss_dssp TCEEEEEEESCGGGSC----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeEEEECCchhhCC----HHHHHHHHHHHcCCCcEEEEEEc
Confidence 568888 343 78999999999999999998653
No 75
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=69.48 E-value=4.9 Score=25.94 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=26.9
Q ss_pred CCCceeeeCCCCCc--hhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPFGNP--TRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPfGSp--~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=.|+-... ..++..+.+.+++||.+.++
T Consensus 142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 142 PKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 46999999976321 24588899999999999998
No 76
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=69.33 E-value=2 Score=28.00 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=28.1
Q ss_pred CCCCceeeeCCC-CCchhhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLDPF-GNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlDPf-GSp~pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=+|+- .....+++.+.+.++.||+|.++
T Consensus 124 ~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 124 YPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp SCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 357998877653 34478999999999999999986
No 77
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=69.31 E-value=1.8 Score=26.98 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCCCceeeeC-CCC------------CchhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLD-PFG------------NPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlD-PfG------------Sp~pfldsA~~av~~gGll~vTa 43 (75)
++.||+|=.+ +|= ....+|..+.+.+|+||.+.++.
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 135 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI 135 (185)
T ss_dssp CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence 4569998766 331 11246788889999999999874
No 78
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=69.16 E-value=5.3 Score=25.87 Aligned_cols=38 Identities=21% Similarity=0.157 Sum_probs=30.0
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCccc
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAV 48 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~ 48 (75)
.-|++||++.+=+|..+++++.+. +--++++|++.+..
T Consensus 45 ~G~eVi~lG~~~p~e~lv~aa~~~--~~diV~lS~~~~~~ 82 (161)
T 2yxb_A 45 AGFEVVYTGLRQTPEQVAMAAVQE--DVDVIGVSILNGAH 82 (161)
T ss_dssp TTCEEECCCSBCCHHHHHHHHHHT--TCSEEEEEESSSCH
T ss_pred CCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEeechhh
Confidence 469999999998888898877765 33489999987643
No 79
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=68.83 E-value=2.1 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCCceeeeCC-C--CCchhhHHHHH--HhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLDP-F--GNPTRFLDAAV--SSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlDP-f--GSp~pfldsA~--~av~~gGll~vTaTD~ 46 (75)
+.||+|=.|| | +....++.... +.++.||++.++.-..
T Consensus 99 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 99 GRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 4699999984 4 33345566555 7789999999875433
No 80
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=68.40 E-value=3.9 Score=28.69 Aligned_cols=22 Identities=36% Similarity=0.850 Sum_probs=18.0
Q ss_pred hhhHHHHHHhcccCcEEEE-Eec
Q psy4127 23 TRFLDAAVSSLRDGGLLLV-TCT 44 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~v-TaT 44 (75)
..+|+.+.+.+|.||.|.+ |+|
T Consensus 226 ~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 226 MRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp HHHHHHHHHHEEEEEEEEEEESC
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC
Confidence 4789999999999998876 443
No 81
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=67.91 E-value=3.4 Score=28.77 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=28.9
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=+|+. .|..+++.+.+.++.||.|.+...+
T Consensus 186 ~~fD~V~~~~~-~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 186 LTFDAVALDML-NPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp --EEEEEECSS-STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred CCeeEEEECCC-CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 46999999874 4777999999999999999976643
No 82
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=67.52 E-value=4.6 Score=26.86 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=+|+- .|..+|+.+.+.++.||.+.+..-.
T Consensus 170 ~~~D~v~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 170 GSVDRAVLDML-APWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp TCEEEEEEESS-CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CceeEEEECCc-CHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 46898888753 5779999999999999999997643
No 83
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=67.48 E-value=6.5 Score=29.18 Aligned_cols=33 Identities=27% Similarity=0.581 Sum_probs=26.0
Q ss_pred CCceeeeCCC--CCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPF--GNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPf--GSp~pfldsA~~av~~gGll~vTa 43 (75)
.||+|=+||- |....+++ +++.++.+|+++|++
T Consensus 353 ~fD~Vv~dPPr~g~~~~~~~-~l~~l~p~givyvsc 387 (425)
T 2jjq_A 353 GFDTVIVDPPRAGLHPRLVK-RLNREKPGVIVYVSC 387 (425)
T ss_dssp TCSEEEECCCTTCSCHHHHH-HHHHHCCSEEEEEES
T ss_pred CCCEEEEcCCccchHHHHHH-HHHhcCCCcEEEEEC
Confidence 6999999986 54445666 556799999999984
No 84
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=67.35 E-value=3.7 Score=25.25 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=27.7
Q ss_pred CCCCceeeeCC-CC--CchhhHHHH--HHhcccCcEEEEEecCcc
Q psy4127 8 GRHFDAIDLDP-FG--NPTRFLDAA--VSSLRDGGLLLVTCTDMA 47 (75)
Q Consensus 8 ~~~fD~IDlDP-fG--Sp~pfldsA--~~av~~gGll~vTaTD~a 47 (75)
.+.||+|=.|| |. .....+... .+.+++||++.++.-...
T Consensus 114 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 114 KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 46799999985 43 445566655 556899999998754433
No 85
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=66.38 E-value=4.8 Score=28.02 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=26.8
Q ss_pred CCceeeeCCCCCc-------hhhHHHHHHhcccCcEEEE
Q psy4127 10 HFDAIDLDPFGNP-------TRFLDAAVSSLRDGGLLLV 41 (75)
Q Consensus 10 ~fD~IDlDPfGSp-------~pfldsA~~av~~gGll~v 41 (75)
.||.|=+|+|.-. ..|++...+.++.||.|..
T Consensus 173 ~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 173 KVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp CEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 6999999999721 3589999999999999873
No 86
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=66.30 E-value=4.6 Score=26.15 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=25.0
Q ss_pred CCCceeeeCCCCCchh----hHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGNPTR----FLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~p----fldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=+|..-...+ ++... +.+++||+|.+.-..
T Consensus 133 ~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 133 DTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp CCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred CceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 5799999997443322 34444 789999999886443
No 87
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=64.89 E-value=3.3 Score=25.50 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=29.2
Q ss_pred CchhhHHHHHHhcccCcEEEEEecCcccccCCC
Q psy4127 21 NPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT 53 (75)
Q Consensus 21 Sp~pfldsA~~av~~gGll~vTaTD~a~L~G~~ 53 (75)
|.+++++.|++.++..||=+.+..=.+++.|..
T Consensus 21 svs~~Va~~i~~l~~sGl~y~~~pm~T~IEGe~ 53 (100)
T 2epi_A 21 SVSKYVKKAIEVFKKYDLKVETNAMGTVLEGDL 53 (100)
T ss_dssp CCHHHHHHHHHHHTTSSCEEEEETTEEEEEEEH
T ss_pred CHHHHHHHHHHHHHHcCCCeEecCCccEEEcCH
Confidence 789999999999999999998888777878863
No 88
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=64.63 E-value=2.4 Score=26.59 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=10.7
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--+|-++..-|+.|+.
T Consensus 33 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 73 (212)
T 2np3_A 33 EAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYGT 73 (212)
T ss_dssp --CHHHHHHHC---------------------------CCC
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHhCC
Confidence 35799999999999999999999999999999988888875
No 89
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=63.49 E-value=9 Score=26.07 Aligned_cols=43 Identities=19% Similarity=-0.066 Sum_probs=30.2
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChh
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPE 55 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~ 55 (75)
+.||+|=||-- -...++..+++.++.||+| -.|--+.-+++.+
T Consensus 121 ~~fDlIfIDg~-k~~~~~~~~l~~l~~GG~I---v~DNv~~r~~y~~ 163 (202)
T 3cvo_A 121 RHPDVVLVDGR-FRVGCALATAFSITRPVTL---LFDDYSQRRWQHQ 163 (202)
T ss_dssp CCCSEEEECSS-SHHHHHHHHHHHCSSCEEE---EETTGGGCSSGGG
T ss_pred CCCCEEEEeCC-CchhHHHHHHHhcCCCeEE---EEeCCcCCcchHH
Confidence 57999999952 1257788899999999999 4455444444433
No 90
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=63.47 E-value=2.2 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=31.5
Q ss_pred CCCC---CchhhHHHHHHhcccCcEEEEEecCcccccCCC
Q psy4127 17 DPFG---NPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT 53 (75)
Q Consensus 17 DPfG---Sp~pfldsA~~av~~gGll~vTaTD~a~L~G~~ 53 (75)
=|.| |.+++++.|++.++..||=+.+..=.+++.|..
T Consensus 10 ~Plg~~~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~ 49 (104)
T 2ibo_A 10 LPLVQGIDRIAVIDQVIAYLQTQEVTMVVTPFETVLEGEF 49 (104)
T ss_dssp EECSCSHHHHHHHHHHHHHHHHSSSEEEECSSCEEEEEEH
T ss_pred EcCCCCCcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCH
Confidence 3666 778999999999999999998888788888864
No 91
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=62.90 E-value=6.9 Score=25.53 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=26.6
Q ss_pred CCCceeeeCCCCCc---hhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPFGNP---TRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPfGSp---~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=.|+ ..| ..++..+.+.++.||.+.++
T Consensus 142 ~~~D~v~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 142 EKVDVIYEDV-AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp CCEEEEEECC-CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEEEEec-CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 4689886665 335 66899999999999999996
No 92
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=62.84 E-value=12 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCCceeeeCC-CCC--chhhHHHHHHhcccCc-EEEEE
Q psy4127 9 RHFDAIDLDP-FGN--PTRFLDAAVSSLRDGG-LLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDP-fGS--p~pfldsA~~av~~gG-ll~vT 42 (75)
+.||+|=+|| |+. ...|+..+.+++++|| ++.++
T Consensus 240 ~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 240 HKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp SCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred CCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence 4699999996 542 2478899999999999 43443
No 93
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=62.80 E-value=4.1 Score=29.77 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=26.2
Q ss_pred CCCceeeeCCC--CCc------------------------hhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPF--GNP------------------------TRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPf--GSp------------------------~pfldsA~~av~~gGll~vT 42 (75)
+.||.|=+||= |+. ..+|+.+.+.+|.||.|.++
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvys 373 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYA 373 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 56999999972 321 27799999999999987663
No 94
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=62.31 E-value=6.9 Score=25.61 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=27.5
Q ss_pred CCCceeeeCCCC-CchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFG-NPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfG-Sp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=+|.-- ....+++.+.+.++.||+|.+..+
T Consensus 146 ~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 146 SSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred CCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 579999887321 123788999999999999998653
No 95
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=61.39 E-value=5 Score=25.21 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=32.5
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCccccc
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLC 50 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~ 50 (75)
.-|++||+-++=+|..++++|.+. +--+++++++++..+.
T Consensus 30 ~G~~Vi~lG~~~p~e~~v~~a~~~--~~d~v~lS~~~~~~~~ 69 (137)
T 1ccw_A 30 AGFNVVNIGVLSPQELFIKAAIET--KADAILVSSLYGQGEI 69 (137)
T ss_dssp TTCEEEEEEEEECHHHHHHHHHHH--TCSEEEEEECSSTHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEecCcCcHH
Confidence 469999999999899999988876 3459999998876553
No 96
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=60.61 E-value=9.4 Score=27.63 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCCCceeeeCC-CCCchhhHHHHHHhccc------CcEEEE
Q psy4127 8 GRHFDAIDLDP-FGNPTRFLDAAVSSLRD------GGLLLV 41 (75)
Q Consensus 8 ~~~fD~IDlDP-fGSp~pfldsA~~av~~------gGll~v 41 (75)
.++||+|=+|| |+... ..+.+++++.+ +|++.|
T Consensus 157 ~~~fdLVfiDPPYe~k~-~~~~vl~~L~~~~~r~~~Gi~v~ 196 (283)
T 2oo3_A 157 PEKRGLIFIDPSYERKE-EYKEIPYAIKNAYSKFSTGLYCV 196 (283)
T ss_dssp TTSCEEEEECCCCCSTT-HHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCccEEEECCCCCCCc-HHHHHHHHHHHhCccCCCeEEEE
Confidence 35799999999 99543 34445655544 666655
No 97
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=59.82 E-value=4.3 Score=29.66 Aligned_cols=37 Identities=30% Similarity=0.602 Sum_probs=29.1
Q ss_pred CCCceeeeCC-CCC--------chhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDP-FGN--------PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDP-fGS--------p~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.+| |-. ...|+..+.+.++.||.+.+.+-.
T Consensus 297 ~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 297 ARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp CCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence 5799999874 432 347899999999999999997543
No 98
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=59.26 E-value=7.3 Score=25.72 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=30.2
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEecCccc
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCTDMAV 48 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaTD~a~ 48 (75)
+.||+|=.. -...+..+|..+.+.+++||++.++..|...
T Consensus 104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 147 (276)
T 3mgg_A 104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGS 147 (276)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGG
T ss_pred CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCC
Confidence 467877543 2234578999999999999999998877644
No 99
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=58.49 E-value=7.4 Score=24.55 Aligned_cols=37 Identities=32% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.. -+..+..+|..+.+.+++||.+.++.-.
T Consensus 94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 94 ESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp SCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence 467877432 2335678999999999999999997543
No 100
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=57.93 E-value=6.7 Score=29.82 Aligned_cols=37 Identities=35% Similarity=0.505 Sum_probs=27.5
Q ss_pred CCCCceeeeCCCCC--------c------------------hhhHHHHHHhcccCcEEE-EEec
Q psy4127 8 GRHFDAIDLDPFGN--------P------------------TRFLDAAVSSLRDGGLLL-VTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDPfGS--------p------------------~pfldsA~~av~~gGll~-vTaT 44 (75)
.+.||.|=+||==| | ...|+.|.+.||.||.|. .|||
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 45799999987321 1 458899999999999764 5666
No 101
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=56.94 E-value=4.6 Score=25.96 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=25.9
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=++.- ...+++.+.+.++.||.|.++-
T Consensus 150 ~~fD~i~~~~~--~~~~~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 150 APYDAIHVGAA--APVVPQALIDQLKPGGRLILPV 182 (226)
T ss_dssp CCEEEEEECSB--BSSCCHHHHHTEEEEEEEEEEE
T ss_pred CCcCEEEECCc--hHHHHHHHHHhcCCCcEEEEEE
Confidence 46999977753 2456788999999999998864
No 102
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=56.90 E-value=1.4 Score=27.58 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=35.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+ .+|-.|.+--+|-.+..-|+.|+.
T Consensus 17 ~Il~aA~~lf~~~G~-~~t~~~IA~~agvs~~tlY~~F~s 55 (196)
T 2qwt_A 17 RVLEVAYDTFAAEGL-GVPMDEIARRAGVGAGTVYRHFPT 55 (196)
T ss_dssp HHHHHHHHHHHHTCT-TSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCC-CCCHHHHHHHhCCCHHHHHHHCCC
Confidence 578999999999999 999999999999999998888775
No 103
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=56.32 E-value=8 Score=25.19 Aligned_cols=35 Identities=31% Similarity=0.429 Sum_probs=26.4
Q ss_pred CCCCceeeeCCCCCc--h-------hhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLDPFGNP--T-------RFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp--~-------pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=.|.|+-. . .++..+.+.+|.||.+.+.
T Consensus 126 ~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 357999988877732 1 2377788999999999864
No 104
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=55.98 E-value=6.2 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=26.9
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.. -+..+..+|..+.+.++.||.+.++..
T Consensus 86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 457777433 234567889999999999999999754
No 105
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=55.94 E-value=11 Score=25.52 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=25.3
Q ss_pred eeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcc
Q psy4127 13 AIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMA 47 (75)
Q Consensus 13 ~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a 47 (75)
+++++|-.....-++.|.+.+++||++++ -||+-
T Consensus 4 ~~~~~~~~~~~~~i~~a~~~L~~G~iva~-pTdtv 37 (206)
T 1k7j_A 4 FFYIHPDNPQQRLINQAVEIVRKGGVIVY-PTDSG 37 (206)
T ss_dssp EEECCSSSCCHHHHHHHHHHHHTTCCEEE-EETTE
T ss_pred eEecCCCCCCHHHHHHHHHHHHCCCEEEE-ECCCE
Confidence 45666655445568999999999999994 56764
No 106
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=55.57 E-value=22 Score=24.90 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=28.7
Q ss_pred CCCceeeeC-CCCCc-----------hhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLD-PFGNP-----------TRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlD-PfGSp-----------~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.| |||-- ..+++.+.+.++.||.+.+...+
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 458999998 68742 35788888999999999887554
No 107
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=55.20 E-value=12 Score=28.72 Aligned_cols=52 Identities=21% Similarity=0.327 Sum_probs=36.5
Q ss_pred CCCceeeeCC-CCCch-----------------hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHh
Q psy4127 9 RHFDAIDLDP-FGNPT-----------------RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61 (75)
Q Consensus 9 ~~fD~IDlDP-fGSp~-----------------pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Y 61 (75)
+.||+|=.+| ||... .||.-+++.++.||.+++-..+.. |.......-+|++
T Consensus 260 ~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~-L~~~~~~~~iR~~ 329 (541)
T 2ar0_A 260 PKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV-LFEGGKGTDIRRD 329 (541)
T ss_dssp CCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH-HHCCTHHHHHHHH
T ss_pred cCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcc-eecCcHHHHHHHH
Confidence 4688888874 76532 699999999999999999877764 3333333444443
No 108
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=54.65 E-value=7.8 Score=23.68 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=28.3
Q ss_pred CchhhHHHHHHhcccCcEEEEEecCcccccC
Q psy4127 21 NPTRFLDAAVSSLRDGGLLLVTCTDMAVLCG 51 (75)
Q Consensus 21 Sp~pfldsA~~av~~gGll~vTaTD~a~L~G 51 (75)
|.++|++.|++.++..||=+.+..=.+++.|
T Consensus 17 svs~~Va~~i~~i~~sgl~y~~~pm~T~iEG 47 (99)
T 1lxn_A 17 SLSSYVAAAVEALKKLNVRYEISGMGTLLEA 47 (99)
T ss_dssp CCHHHHHHHHHHHTTSSCEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCeEeCCCeeEEEC
Confidence 6789999999999999999988888888888
No 109
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=54.34 E-value=7.7 Score=24.26 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=27.4
Q ss_pred CCCCceeeeCC-C---C---------CchhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDP-F---G---------NPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDP-f---G---------Sp~pfldsA~~av~~gGll~vTa 43 (75)
++.||+|=.|+ | + .+..++..+.+.++.||.+.+..
T Consensus 91 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 139 (197)
T 3eey_A 91 DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 (197)
T ss_dssp CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence 35799987774 2 1 12468999999999999999875
No 110
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=54.13 E-value=23 Score=21.40 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=29.9
Q ss_pred eeeeCCCCCchhhHHH--HHHhcccCcEEEEEecCcccc
Q psy4127 13 AIDLDPFGNPTRFLDA--AVSSLRDGGLLLVTCTDMAVL 49 (75)
Q Consensus 13 ~IDlDPfGSp~pflds--A~~av~~gGll~vTaTD~a~L 49 (75)
.||+=-.-+|.|+|.. |++.+..|..|-|.+||..+.
T Consensus 28 ~LD~rGl~CP~Pvl~tkkaL~~l~~Ge~L~Vl~dd~~a~ 66 (98)
T 1jdq_A 28 TLDVRGEVCPVPDVETKRALQNMKPGEILEVWIDYPMSK 66 (98)
T ss_dssp EEECSSCCSSHHHHHHHHHHHTCCTTCEEEEEESSCTHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHhCCCCCEEEEEECCccHH
Confidence 3666667789999864 677788999999999998863
No 111
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=53.92 E-value=11 Score=24.07 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=27.3
Q ss_pred CCCCceeeeCC-CCC----------------------chhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDP-FGN----------------------PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDP-fGS----------------------p~pfldsA~~av~~gGll~vTa 43 (75)
++.||+|=.+| |-. ...+++.+.+.++.||.+.+..
T Consensus 121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 179 (230)
T 3evz_A 121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL 179 (230)
T ss_dssp CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 36799998874 321 2568999999999999999853
No 112
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=53.89 E-value=2.9 Score=25.83 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=30.5
Q ss_pred hhhHHHHHHhc-ccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSL-RDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av-~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+ ...|+-.+|-.|.+--+|-.+..-|+.|+.
T Consensus 27 ~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 68 (212)
T 3nxc_A 27 EEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPS 68 (212)
T ss_dssp HHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCC
Confidence 45799999977 888999999999999999998888887765
No 113
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=53.32 E-value=1.3 Score=27.50 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=36.1
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+ .+|-.|.+--+|-.+..-|+.|+.
T Consensus 19 ~~Il~aA~~lf~~~G~-~~s~~~Ia~~agvs~~t~Y~~F~s 58 (199)
T 2rek_A 19 DRIIEAAAAEVARHGA-DASLEEIARRAGVGSATLHRHFPS 58 (199)
T ss_dssp HHHHHHHHHHHHHHGG-GCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHhCCchHHHHHHCCC
Confidence 3579999999999999 999999999999999988888875
No 114
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=52.90 E-value=1.2 Score=27.08 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=37.6
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...+++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 12 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 52 (195)
T 3ppb_A 12 QAILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPS 52 (195)
T ss_dssp HHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 35799999999999999999999999999999999988875
No 115
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=52.76 E-value=7.5 Score=25.89 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=29.5
Q ss_pred CCCCceeeeC--CCCC----------chhhHHHHHHhcccCcEEEEEecCcc
Q psy4127 8 GRHFDAIDLD--PFGN----------PTRFLDAAVSSLRDGGLLLVTCTDMA 47 (75)
Q Consensus 8 ~~~fD~IDlD--PfGS----------p~pfldsA~~av~~gGll~vTaTD~a 47 (75)
.+.||+|=.- .++. +..+|..+.+.+++||++.++.-+..
T Consensus 128 ~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (293)
T 3thr_A 128 GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 179 (293)
T ss_dssp TTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence 3578988763 3322 55689999999999999999865533
No 116
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=52.59 E-value=7.1 Score=26.42 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=29.4
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=..-+.....+++.+.+.++.||.+.+.
T Consensus 150 ~~fD~I~s~a~~~~~~ll~~~~~~LkpgG~l~~~ 183 (249)
T 3g89_A 150 EAYARAVARAVAPLCVLSELLLPFLEVGGAAVAM 183 (249)
T ss_dssp TCEEEEEEESSCCHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCceEEEECCcCCHHHHHHHHHHHcCCCeEEEEE
Confidence 5799999888887788999999999999987763
No 117
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=51.28 E-value=6.6 Score=25.49 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=26.8
Q ss_pred CCCceeee----CCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDL----DPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDl----DPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=. .-+..+..+|..+.+.+|+||.|.++-.
T Consensus 102 ~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 102 EKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp SCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecC
Confidence 45787753 1233478889999999999999999743
No 118
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=50.92 E-value=11 Score=24.80 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.1
Q ss_pred hhHHHHHHhcccCcEEEEEecCcc
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMA 47 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a 47 (75)
.++..+.+.++.||+|.+ .||..
T Consensus 154 ~~l~~~~~~LkpgG~l~~-~td~~ 176 (246)
T 2vdv_E 154 TLLSEYAYVLKEGGVVYT-ITDVK 176 (246)
T ss_dssp HHHHHHHHHEEEEEEEEE-EESCH
T ss_pred HHHHHHHHHcCCCCEEEE-EeccH
Confidence 799999999999999988 44443
No 119
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=50.84 E-value=3.1 Score=29.74 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCCceeeeCC--CCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDP--FGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDP--fGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|-||- |-+-..+|+.....|++||+|.+=-.
T Consensus 208 ~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 208 DTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 4688766653 33334678888899999999987543
No 120
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=50.61 E-value=11 Score=24.46 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=26.8
Q ss_pred CCCceeee----CCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDL----DPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDl----DPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=. .-. .+..+|..+.+.++.||.+.++..
T Consensus 113 ~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 113 EELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp TCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 56888732 222 367899999999999999999864
No 121
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=50.18 E-value=12 Score=23.22 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=26.9
Q ss_pred CCCceeeeCC----CCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP----FGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=... +-.+..+|..+.+.+++||.+.++.
T Consensus 110 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 148 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGG 148 (219)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEe
Confidence 4577776543 2446789999999999999999974
No 122
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=49.69 E-value=11 Score=24.79 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCceeee----CCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDL----DPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDl----DPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=. .-+..+..+|..+.+.+++||.+.++.-
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 46887742 2234567899999999999999998753
No 123
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=48.95 E-value=7.6 Score=24.91 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=26.4
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=++.-- ..+++.+.+.++.||.|.++.-
T Consensus 161 ~~fD~I~~~~~~--~~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 161 GLFDAIHVGASA--SELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CCEEEEEECSBB--SSCCHHHHHHEEEEEEEEEEEE
T ss_pred CCcCEEEECCch--HHHHHHHHHhcCCCcEEEEEEc
Confidence 468999776433 3567889999999999998864
No 124
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=48.69 E-value=7.6 Score=23.97 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=29.0
Q ss_pred CchhhHHHHHHhcccCcEEEEEecCcccccCCC
Q psy4127 21 NPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT 53 (75)
Q Consensus 21 Sp~pfldsA~~av~~gGll~vTaTD~a~L~G~~ 53 (75)
|.++|++.+++.++..||=+.+..=.+++.|..
T Consensus 21 svs~~Va~~i~~i~~sGl~y~~~pm~T~IEGe~ 53 (104)
T 1lxj_A 21 SISDFVALIEKKIRESPLKSTLHSAGTTIEGPW 53 (104)
T ss_dssp CCHHHHHHHHHHHHTSSSEEEEETTEEEEEEEH
T ss_pred CHHHHHHHHHHHHHHcCCCeEeCCCccEEEcCH
Confidence 778999999999999999998888777878764
No 125
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=47.53 E-value=2.2 Score=26.08 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=37.1
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 21 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 60 (206)
T 3kz9_A 21 QLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPT 60 (206)
T ss_dssp HHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCC
Confidence 4799999999999999999999999999999998888876
No 126
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=47.52 E-value=10 Score=24.06 Aligned_cols=38 Identities=29% Similarity=0.590 Sum_probs=27.1
Q ss_pred CCCceeeeC----CCCCchhhHHHHH-HhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAV-SSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~-~av~~gGll~vTaTD~ 46 (75)
+.||+|=.- -...|..+|..+. +.+|+||.|.++.-+.
T Consensus 102 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 102 RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred CcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 457777541 1123578999999 9999999999986443
No 127
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=46.89 E-value=14 Score=23.60 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=26.7
Q ss_pred CCCCceeee----CCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDL----DPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDl----DPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+.||+|=. .-+..+..+|..+.+.++.||.+.++.
T Consensus 114 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 345777643 223456689999999999999999986
No 128
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=46.67 E-value=25 Score=23.24 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=26.7
Q ss_pred CCCceeeeC-C---C--CCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLD-P---F--GNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlD-P---f--GSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.. . + -.+..+|..+.+.+|+||.+.++.-.
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 457877432 1 2 34578899999999999999987543
No 129
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=46.35 E-value=2 Score=26.00 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=36.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-+++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (188)
T 3qkx_A 12 QIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKN 51 (188)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSS
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCC
Confidence 4689999999999999999999999999999888888875
No 130
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=46.29 E-value=1.8 Score=26.78 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=37.7
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 34 ~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 74 (218)
T 3dcf_A 34 TQIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKS 74 (218)
T ss_dssp HHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 45789999999999999999999999999999999988876
No 131
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=46.18 E-value=10 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=28.2
Q ss_pred CCCceeeeCC-C---C---CchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLDP-F---G---NPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlDP-f---G---Sp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=..+ . - ....+|..+.+.+++||.+.++....
T Consensus 106 ~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp CCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred CceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 5689987762 2 1 12678899999999999999976543
No 132
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=46.05 E-value=7.2 Score=24.44 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=29.9
Q ss_pred CCchhhHHHHHHhcccCcEEEEEecCcccccCCC
Q psy4127 20 GNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT 53 (75)
Q Consensus 20 GSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~ 53 (75)
+|.+++++.+++.++..||=+.+..=.+++.|..
T Consensus 21 ~svs~~Va~~i~vl~~sGl~y~~~pmgT~IEGe~ 54 (109)
T 1yqh_A 21 KDVYSVVDKAIEVVQQSGVRYEVGAMETTLEGEL 54 (109)
T ss_dssp SCHHHHHHHHHHHHHHSCSEEEECSSCEEEEECH
T ss_pred CcHHHHHHHHHHHHHHcCCCeEecCCccEEEcCH
Confidence 3689999999999999999998888888888864
No 133
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=46.01 E-value=15 Score=23.18 Aligned_cols=35 Identities=31% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCCceeeeCC---CCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP---FGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP---fGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=... .-.+..+|..+.+.++.||.+.++-
T Consensus 114 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~ 151 (215)
T 2zfu_A 114 ESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAE 151 (215)
T ss_dssp TCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEE
Confidence 4577764321 2346788999999999999999974
No 134
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=45.03 E-value=2.5 Score=26.09 Aligned_cols=41 Identities=27% Similarity=0.291 Sum_probs=37.5
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--.|-.+..-|+.|++
T Consensus 10 ~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 50 (195)
T 2dg7_A 10 QRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPD 50 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 35689999999999999999999999999999999988876
No 135
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=44.89 E-value=3.6 Score=25.56 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 20 ~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 60 (218)
T 3gzi_A 20 DKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGS 60 (218)
T ss_dssp HHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSS
T ss_pred HHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 35789999999999999999999999999999998888875
No 136
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=43.78 E-value=18 Score=24.20 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=25.5
Q ss_pred CCCCceeee---CCCCC---------chhhHHHHHHhcccCcEEEEEecCc
Q psy4127 8 GRHFDAIDL---DPFGN---------PTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 8 ~~~fD~IDl---DPfGS---------p~pfldsA~~av~~gGll~vTaTD~ 46 (75)
.+.||.|-+ ||+-. -..+|..+.+.++.||.|.++ ||.
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~-td~ 170 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI-TDV 170 (235)
T ss_dssp TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE-ESC
T ss_pred CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE-eCC
Confidence 345788776 44311 136899999999999999876 554
No 137
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=43.75 E-value=2.3 Score=26.45 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=36.9
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--.|-.+..-|+.|+.
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (185)
T 2yve_A 8 MILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIYHFPS 47 (185)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHHhCcC
Confidence 4689999999999999999999999999999999998876
No 138
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=43.62 E-value=20 Score=22.10 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCCceeeeCC----CCCc-----------hhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDP----FGNP-----------TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp-----------~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.|. .|.. ..++..+.+.+++||.+.++.-
T Consensus 96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 4699998764 2322 2578888999999999998743
No 139
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=43.60 E-value=17 Score=24.15 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=27.5
Q ss_pred CCCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=.. -+..+..+|..+.+.+++||.+.++.-
T Consensus 134 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY 174 (285)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence 3567877442 123567899999999999999998754
No 140
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=43.33 E-value=2.9 Score=25.17 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=36.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 47 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFYHFES 47 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHHHcCC
Confidence 4689999999999999999999999999999998888875
No 141
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=43.21 E-value=1.7 Score=26.84 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=36.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+-.+|-.|.+--+|-.+..-|+.|+.
T Consensus 18 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (220)
T 3lhq_A 18 HILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKN 57 (220)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhhcCC
Confidence 4789999999999999999999999999999999988876
No 142
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=43.17 E-value=10 Score=23.93 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=26.6
Q ss_pred CCCceeee-CC--CCC---chhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDL-DP--FGN---PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDl-DP--fGS---p~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=. ++ +-. +..+|..+.+.++.||.+.++..+
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 46886544 34 332 356888889999999999988655
No 143
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=42.62 E-value=5.1 Score=28.41 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=24.0
Q ss_pred CCCceeeeCC--CCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP--FGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP--fGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+|-||- |-+-..+++..+..|++||+|.+=-
T Consensus 181 ~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 181 TVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcC
Confidence 3577766655 3222346888888899999998754
No 144
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=42.22 E-value=46 Score=19.78 Aligned_cols=50 Identities=4% Similarity=-0.035 Sum_probs=32.0
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhc
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYN 62 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg 62 (75)
+.||+|=.++-..+..++..+.+. .||.+.++.-....+ ..-...++++|
T Consensus 99 ~~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~~~~--~~~~~~l~~~g 148 (183)
T 2yxd_A 99 LEFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVLENA--AKIINEFESRG 148 (183)
T ss_dssp CCCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCHHHH--HHHHHHHHHTT
T ss_pred CCCcEEEECCcccHHHHHHHHhhC--CCCEEEEEecccccH--HHHHHHHHHcC
Confidence 469999888776667777766666 899998876332221 12344555565
No 145
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=42.22 E-value=1.9 Score=26.45 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=36.9
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 18 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (203)
T 3f1b_A 18 QMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGS 57 (203)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCC
Confidence 4789999999999999999999999999999999988875
No 146
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=41.96 E-value=15 Score=26.05 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=26.1
Q ss_pred CCceeeeCCCCCch--------------hhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPT--------------RFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~--------------pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|.+. ..++.++++++.+|-+.+..
T Consensus 254 g~Dvv-id~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 254 EVDCA-VDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp CEEEE-EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCEE-EECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 57877 78888753 47899999999999887654
No 147
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=41.96 E-value=19 Score=24.05 Aligned_cols=20 Identities=25% Similarity=0.591 Sum_probs=16.9
Q ss_pred hhhHHHHHHhcccCcEEEEE
Q psy4127 23 TRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vT 42 (75)
..+++.+.+.++.||.+.+.
T Consensus 218 ~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 218 VHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp HHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEE
Confidence 45778888999999999986
No 148
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=41.90 E-value=1.9 Score=26.26 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=37.5
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 17 ~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 57 (156)
T 3ljl_A 17 QKIMDAVVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFPK 57 (156)
T ss_dssp HHHHHHHHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCCC
Confidence 35789999999999999999999999999999999988876
No 149
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=41.88 E-value=2.7 Score=26.98 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=37.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 43 ~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F~s 82 (214)
T 2guh_A 43 LIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYFGS 82 (214)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHcCC
Confidence 4799999999999999999999999999999999998876
No 150
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=41.86 E-value=18 Score=23.03 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=27.2
Q ss_pred CCCceeeeCC----CCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDP----FGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=... +..+..+|..+.+.++.||.+.++...
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 141 (219)
T 1vlm_A 101 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD 141 (219)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence 4577764331 235678999999999999999997543
No 151
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=41.78 E-value=20 Score=27.00 Aligned_cols=21 Identities=48% Similarity=0.880 Sum_probs=16.8
Q ss_pred hhHHHHHHhcccCcEEEE-Eec
Q psy4127 24 RFLDAAVSSLRDGGLLLV-TCT 44 (75)
Q Consensus 24 pfldsA~~av~~gGll~v-TaT 44 (75)
..|+.|.+.+|.||.|.. |+|
T Consensus 227 ~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 227 ELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp HHHHHHHHHEEEEEEEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEeccc
Confidence 468899999999998865 444
No 152
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=41.78 E-value=28 Score=23.95 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCCCceeeeC-CCCCch-----------------------hhHHHHHHhcccCcEEEEEecCc
Q psy4127 8 GRHFDAIDLD-PFGNPT-----------------------RFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 8 ~~~fD~IDlD-PfGSp~-----------------------pfldsA~~av~~gGll~vTaTD~ 46 (75)
.+.||+|=.| ||.... ..+..+.+.+++||.|++-..|.
T Consensus 38 ~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~ 100 (297)
T 2zig_A 38 EASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDV 100 (297)
T ss_dssp TTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCE
T ss_pred CCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCC
Confidence 4579999999 575321 23456778899999999987775
No 153
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=41.53 E-value=8.6 Score=24.27 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=26.0
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=++. ....+.+.+.+.++.||.|.++.-+
T Consensus 142 ~~~D~i~~~~--~~~~~~~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTA--APPEIPTALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESS--BCSSCCTHHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEcc--chhhhhHHHHHhcccCcEEEEEEcC
Confidence 5689988873 2223446788999999999998765
No 154
>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3
Probab=41.15 E-value=25 Score=21.28 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=26.9
Q ss_pred eeeCCCCCchhhHHH--HHHhcccCcEEEEEecCcccc
Q psy4127 14 IDLDPFGNPTRFLDA--AVSSLRDGGLLLVTCTDMAVL 49 (75)
Q Consensus 14 IDlDPfGSp~pflds--A~~av~~gGll~vTaTD~a~L 49 (75)
||+=-.-+|.|++.. |++.++.|..|-|.+||-.+.
T Consensus 30 LD~rGl~CP~PvlktkkaL~~l~~Ge~L~Vl~dd~~a~ 67 (97)
T 1je3_A 30 LDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCPQSI 67 (97)
T ss_dssp ECSBCCSSSSSTHHHHHHTTTCCSSCEEEEEEBCSSSS
T ss_pred EeCCCCCCCHHHHHHHHHHHcCCCCCEEEEEECCcchH
Confidence 444455578898763 556677899999999998765
No 155
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=41.03 E-value=1.8 Score=26.87 Aligned_cols=41 Identities=12% Similarity=0.235 Sum_probs=37.7
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 20 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (207)
T 2rae_A 20 DRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPS 60 (207)
T ss_dssp HHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCC
Confidence 45799999999999999999999999999999999888876
No 156
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=40.51 E-value=1.9 Score=26.79 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=37.7
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 12 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 52 (193)
T 2dg8_A 12 ERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTG 52 (193)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCCC
Confidence 46789999999999999999999999999999999988875
No 157
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=40.29 E-value=2.2 Score=25.73 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=36.4
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..+++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 16 ~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 55 (177)
T 3kkc_A 16 AIYNAFISLLQENDYSKITVQDVIGLANVGRSTFYSHYES 55 (177)
T ss_dssp HHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHTTTCSS
T ss_pred HHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHHHHcCC
Confidence 4689999999999999999999999999999888887765
No 158
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=40.21 E-value=13 Score=24.50 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCCCceeee----CCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDL----DPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDl----DPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=. .-. .+..+|..+.+.+++||.+.++..
T Consensus 112 ~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 112 NEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp TTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 346888743 223 367899999999999999999864
No 159
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=40.14 E-value=25 Score=25.63 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCCceeeeCCCCCch--------hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcCcccC
Q psy4127 9 RHFDAIDLDPFGNPT--------RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSLK 67 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~--------pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~ 67 (75)
.++|.|=+|+|+ |+ .++..-.+.++.||.+. |.|=-+ .-+..+..-|-...+
T Consensus 185 ~~~Da~flDgFs-P~kNPeLWs~e~f~~l~~~~~pgg~la-TYtaag-----~VRR~L~~aGF~V~k 244 (308)
T 3vyw_A 185 FKADAVFHDAFS-PYKNPELWTLDFLSLIKERIDEKGYWV-SYSSSL-----SVRKSLLTLGFKVGS 244 (308)
T ss_dssp CCEEEEEECCSC-TTTSGGGGSHHHHHHHHTTEEEEEEEE-ESCCCH-----HHHHHHHHTTCEEEE
T ss_pred cceeEEEeCCCC-cccCcccCCHHHHHHHHHHhCCCcEEE-EEeCcH-----HHHHHHHHCCCEEEe
Confidence 368999999998 53 47887888999999876 443211 124455555554433
No 160
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=39.96 E-value=2.6 Score=26.30 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=37.5
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 33 ~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 73 (222)
T 3bru_A 33 QSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRN 73 (222)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCC
Confidence 34899999999999999999999999999999999888876
No 161
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=39.94 E-value=2 Score=26.28 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 20 ~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 60 (208)
T 3cwr_A 20 ESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASG 60 (208)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcCC
Confidence 34799999999999999999999999999999999888876
No 162
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=39.92 E-value=26 Score=22.99 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=27.4
Q ss_pred CCCCceeeeCC----C-CCchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP----F-GNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP----f-GSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=... + ..+..+|..+.+.++.||.+.++.-
T Consensus 112 ~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 153 (260)
T 2avn_A 112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 153 (260)
T ss_dssp TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeC
Confidence 34688876532 1 3467888999999999999998753
No 163
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=39.88 E-value=48 Score=23.84 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=29.8
Q ss_pred CCCCceeeeCCCC-CchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 8 GRHFDAIDLDPFG-NPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 8 ~~~fD~IDlDPfG-Sp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
.+.||+|=++-.- .+..+++...+.+|.||.|.+...+.
T Consensus 186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~~ 225 (298)
T 3fpf_A 186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTYTG 225 (298)
T ss_dssp GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEECCG
T ss_pred CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcCcc
Confidence 3579999886542 22479999999999999999876543
No 164
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=39.86 E-value=2.4 Score=26.31 Aligned_cols=41 Identities=22% Similarity=0.346 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (216)
T 3s5r_A 13 ELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKT 53 (216)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcCC
Confidence 45789999999999999999999999999999988888875
No 165
>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*
Probab=39.73 E-value=11 Score=25.75 Aligned_cols=31 Identities=16% Similarity=0.400 Sum_probs=24.9
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|+ +.++.++++++++|-+.+..
T Consensus 211 ~~d~v-~d~~g~--~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 211 LWAGA-IDTVGD--KVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp CEEEE-EESSCH--HHHHHHHHTEEEEEEEEECC
T ss_pred CccEE-EECCCc--HHHHHHHHHHhcCCEEEEEe
Confidence 46765 788885 48999999999999887764
No 166
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=39.64 E-value=26 Score=24.64 Aligned_cols=23 Identities=35% Similarity=0.613 Sum_probs=19.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCc
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~ 46 (75)
.|++.+.+.++.||.+++.-.+.
T Consensus 145 ~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 145 AFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEGG
T ss_pred HHHHHHHHHhCCCCEEEEEEChH
Confidence 67999999999999998876654
No 167
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=39.63 E-value=9.8 Score=23.83 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCC---CchhhHHHHHHhcccCcEEEEEecCcccccCCC
Q psy4127 18 PFG---NPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNT 53 (75)
Q Consensus 18 PfG---Sp~pfldsA~~av~~gGll~vTaTD~a~L~G~~ 53 (75)
|-| |-++|++.|++.++..||=+-+..=.+++.|..
T Consensus 24 Plg~~~svs~~Va~~i~vi~~sGL~y~~~pmgT~IEGe~ 62 (106)
T 1vk8_A 24 PAVEDGRLHEVIDRAIEKISSWGMKYEVGPSNTTVEGEF 62 (106)
T ss_dssp ESSCGGGHHHHHHHHHHHHHTTCSCEEECSSCEEEEECH
T ss_pred eCCCCCchHHHHHHHHHHHHHcCCCeEeCCCccEEEcCH
Confidence 555 778999999999999999888877777778864
No 168
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=39.63 E-value=23 Score=23.68 Aligned_cols=37 Identities=16% Similarity=0.359 Sum_probs=28.0
Q ss_pred CCCceeeeCC----CCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDP----FGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=... +..+..+|..+.+.++.||++.+.-.+
T Consensus 88 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 4577775532 234568899999999999999988766
No 169
>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1
Probab=39.60 E-value=17 Score=24.90 Aligned_cols=31 Identities=35% Similarity=0.620 Sum_probs=24.7
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|. +.++.++++++++|-+.+-.
T Consensus 216 ~~d~v-id~~g~--~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 216 RWAAA-VDPVGG--RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp CEEEE-EECSTT--TTHHHHHHTEEEEEEEEECS
T ss_pred cccEE-EECCcH--HHHHHHHHhhccCCEEEEEe
Confidence 46766 788886 46889999999999887643
No 170
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=39.56 E-value=8.7 Score=26.99 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=29.0
Q ss_pred CCCCceeeeCC-CCC--------chhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDP-FGN--------PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDP-fGS--------p~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=.+| |.. ...++..+.+.+++||.+.+..-+
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 35689988865 331 356888899999999999997654
No 171
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=39.53 E-value=16 Score=22.78 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=27.4
Q ss_pred CCceeeeC-C--CCCchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 10 HFDAIDLD-P--FGNPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 10 ~fD~IDlD-P--fGSp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
.||+|=.. . .-.+..+|....+.++.||.|.++.-..
T Consensus 116 ~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 116 DYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp CEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 47876432 1 3456789999999999999999976433
No 172
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=39.47 E-value=25 Score=26.06 Aligned_cols=49 Identities=20% Similarity=0.402 Sum_probs=30.9
Q ss_pred eeeeCCCCCchhhHHHHHHhcccCcEEEEEecCccc-ccC--CChhHHHHHhc
Q psy4127 13 AIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAV-LCG--NTPETCYVKYN 62 (75)
Q Consensus 13 ~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~-L~G--~~~~~~~r~Yg 62 (75)
++++||-.-...-++.|.+.++.||++++- ||+-- |.+ .+++..-+-|-
T Consensus 4 ~~~i~~~~~~~~~i~~aa~~L~~G~iVa~P-TeTvYGLg~da~n~~AV~rI~~ 55 (352)
T 2eqa_A 4 IIKIDPLNPEIDKIKIAADVIRNGGTVAFP-TETVYGLGANAFDGNACLKIFQ 55 (352)
T ss_dssp EEECCSSSCCHHHHHHHHHHHHTTCCEEEC-CSSSCEEEEETTCHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCEEEEE-CCCEeEEEEeCCCHHHHHHHHH
Confidence 567777553345588999999999998873 55532 222 24555555443
No 173
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=39.33 E-value=26 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=24.6
Q ss_pred CCCceeeeCCCCC--chhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPFGN--PTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPfGS--p~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=.|---. ...++..+.+.+|+||.+.++
T Consensus 125 ~~fD~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 125 EKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceeEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence 4689988873221 112477888999999999998
No 174
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=39.23 E-value=32 Score=21.98 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=26.2
Q ss_pred CCCceeee-CCC---C--CchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDL-DPF---G--NPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDl-DPf---G--Sp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=. ..+ . .+..+|..+.+.++.||.|.+..-..
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 46787742 222 2 34678999999999999998865433
No 175
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=39.19 E-value=1.6 Score=26.54 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=36.9
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 53 (196)
T 3col_A 13 VKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKN 53 (196)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHhCC
Confidence 35789999999999999999999999999998888887775
No 176
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=38.78 E-value=18 Score=23.32 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=26.8
Q ss_pred CCCceeeeCC----CCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDP----FGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=... +..+..+|..+.+.++.||.+.++.-+
T Consensus 94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 4577765422 234677888888999999999998643
No 177
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=38.72 E-value=15 Score=22.23 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=26.6
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.. -+-.+..+++.+.+.++.||.+.++.-.
T Consensus 74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 114 (170)
T 3i9f_A 74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR 114 (170)
T ss_dssp TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 457766321 2234678999999999999999998543
No 178
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=38.54 E-value=22 Score=24.01 Aligned_cols=47 Identities=17% Similarity=0.243 Sum_probs=29.0
Q ss_pred eeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCC---ChhHHHHHh
Q psy4127 14 IDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGN---TPETCYVKY 61 (75)
Q Consensus 14 IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~---~~~~~~r~Y 61 (75)
++++|-.....-++.|.+.++.||+++ =-||+--=-|- +++..-+-|
T Consensus 4 ~~~~~~~~~~~~i~~a~~~L~~G~vVa-~pTdtvygL~~da~n~~Av~rl~ 53 (208)
T 1jcu_A 4 RKITRKNPSPDVLEEAISVMEGGGIVI-YPTDTIYGLGVNALDEDAVRRLF 53 (208)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTCEEE-CCCSSSCEEEEETTSHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHCCCEEE-EECCCEEEEEEeCCCHHHHHHHH
Confidence 345554433456889999999999998 55776432222 444444444
No 179
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}
Probab=38.42 E-value=30 Score=24.71 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=26.8
Q ss_pred CCceeeeCCCCCchhhHHHHHHhc----ccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSL----RDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av----~~gGll~vTa 43 (75)
.+|+| +|.-|++...++.+++++ +.+|-+.+-.
T Consensus 282 g~D~v-id~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 282 GAKLF-LEATGVPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp CCSEE-EECSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred CCCEE-EECCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 58877 899998877788888888 9999887754
No 180
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=38.16 E-value=2.2 Score=26.37 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=36.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 30 ~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 69 (217)
T 3mvp_A 30 KILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFAS 69 (217)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHHcCC
Confidence 4799999999999999999999999999999988888875
No 181
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=38.16 E-value=19 Score=25.07 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++++|-+.+-.
T Consensus 235 g~D~v-~d~~g~~-~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 235 GVDKV-VIAGGDV-HTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp CEEEE-EECSSCT-THHHHHHHHEEEEEEEEECC
T ss_pred CCCEE-EECCCCh-HHHHHHHHHHhcCCEEEEec
Confidence 58888 8899975 56788999999999887553
No 182
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=38.11 E-value=22 Score=25.29 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=26.1
Q ss_pred CCCceeeeCC----CCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP----FGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=... +..+..+|..+.+.+|.||+|.++-
T Consensus 165 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 203 (383)
T 4fsd_A 165 SSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSD 203 (383)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 4577775322 2346789999999999999999974
No 183
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=38.10 E-value=3.2 Score=25.75 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=36.7
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|=.|.+--.|-.+..-|+.|+.
T Consensus 12 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 51 (199)
T 2o7t_A 12 HIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPD 51 (199)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4689999999999999999999999999999998888875
No 184
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=37.90 E-value=22 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=15.7
Q ss_pred hhhHHHHHHhcccCcE-EEEEe
Q psy4127 23 TRFLDAAVSSLRDGGL-LLVTC 43 (75)
Q Consensus 23 ~pfldsA~~av~~gGl-l~vTa 43 (75)
..|+..+.+.++.||. +.+..
T Consensus 144 ~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 144 RRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp HHHHTCCGGGBCSSSEEEEEEC
T ss_pred HHHHHHHHHHhcCCCeEEEEEE
Confidence 4566777789999999 66544
No 185
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=37.83 E-value=2.3 Score=25.76 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=37.2
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 13 ~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 53 (191)
T 3on4_A 13 ERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPS 53 (191)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCCC
Confidence 45789999999999999999999999999998888888775
No 186
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=37.82 E-value=21 Score=22.99 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=++.-- ..+++.+.+.++.||.|.++.-.
T Consensus 162 ~~fD~I~~~~~~--~~~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 162 APYNAIHVGAAA--PDTPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp CSEEEEEECSCB--SSCCHHHHHTEEEEEEEEEEESC
T ss_pred CCccEEEECCch--HHHHHHHHHHhcCCCEEEEEEec
Confidence 469999776532 24558889999999999998643
No 187
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=37.80 E-value=16 Score=23.13 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.7
Q ss_pred hhhHHHHHHhcccCcEEEEEe
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTa 43 (75)
..+|..+.+.+|+||.+.++.
T Consensus 120 ~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 120 PEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp SHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEe
Confidence 678899999999999999964
No 188
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=37.78 E-value=31 Score=25.19 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=35.3
Q ss_pred CCCceeeeC-CCCCc--------------------hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHH
Q psy4127 9 RHFDAIDLD-PFGNP--------------------TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVK 60 (75)
Q Consensus 9 ~~fD~IDlD-PfGSp--------------------~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~ 60 (75)
+.||+|=.+ |||.. ..||..+++.++.||.+++-..+.....|. ...-+|+
T Consensus 252 ~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~-~~~~iR~ 323 (445)
T 2okc_A 252 TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG-AGETIRK 323 (445)
T ss_dssp SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST-HHHHHHH
T ss_pred CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCcccccCc-HHHHHHH
Confidence 368888776 47642 378999999999999999887765444433 3344444
No 189
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=37.67 E-value=34 Score=28.01 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=31.5
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCccc
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAV 48 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~ 48 (75)
.-|++||+-.+=+|..++++|++. +=-+++++++++..
T Consensus 631 ~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~ 668 (762)
T 2xij_A 631 LGFDVDIGPLFQTPREVAQQAVDA--DVHAVGVSTLAAGH 668 (762)
T ss_dssp TTCEEEECCTTCCHHHHHHHHHHT--TCSEEEEEECSSCH
T ss_pred CCeEEeeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHHH
Confidence 469999999999999999988876 33499999988654
No 190
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=37.64 E-value=19 Score=22.39 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=26.1
Q ss_pred CCCceeeeCCCC-----CchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFG-----NPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfG-----Sp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.. +. .+..+|..+.+.+++||.+.++.-.
T Consensus 93 ~~fD~v~~~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 133 (202)
T 2kw5_A 93 DAWEGIVSI-FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFA 133 (202)
T ss_dssp TTCSEEEEE-CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred CCccEEEEE-hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 468888542 22 2456888888999999999998643
No 191
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=37.56 E-value=32 Score=22.78 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=24.8
Q ss_pred CCCCceeeeCCC----CCc--hhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDPF----GNP--TRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDPf----GSp--~pfldsA~~av~~gGll~vTa 43 (75)
.+.||+|=...- ..+ ..+|..+.+.++.||.+.+.+
T Consensus 182 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 356888866432 112 268888999999999966643
No 192
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=37.47 E-value=26 Score=22.01 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=17.5
Q ss_pred hHHHHHHhcccCcEEEEEe
Q psy4127 25 FLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 25 fldsA~~av~~gGll~vTa 43 (75)
+|..+.+.+|.||.+.++-
T Consensus 127 ~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 127 AIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp HHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEe
Confidence 8899999999999999984
No 193
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=37.43 E-value=3.3 Score=25.48 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=37.7
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 19 ~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (213)
T 2qtq_A 19 DLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGN 59 (213)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCC
Confidence 45799999999999999999999999999999999988876
No 194
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=37.14 E-value=1.6 Score=26.65 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 14 ~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 54 (196)
T 3he0_A 14 DQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSD 54 (196)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcCC
Confidence 46799999999999999999999999999999888888775
No 195
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Probab=37.08 E-value=36 Score=23.68 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=26.4
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.+|+| +|.-|++ ..++.++++++++|-+.+...
T Consensus 251 ~g~Dvv-id~~g~~-~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 251 IEPAVA-LECTGVE-SSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp CCCSEE-EECSCCH-HHHHHHHHHSCTTCEEEECCC
T ss_pred CCCCEE-EECCCCh-HHHHHHHHHhcCCCEEEEEcc
Confidence 357776 7888864 467889999999999887643
No 196
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=37.03 E-value=4.4 Score=26.33 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=36.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 47 ~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~s 86 (255)
T 3g1o_A 47 AILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPS 86 (255)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 5899999999999999999999999999998888887765
No 197
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=36.90 E-value=59 Score=18.52 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=27.4
Q ss_pred eeeeCCCCCchhhHH--HHHHhcccCcEEEEEecCcccc
Q psy4127 13 AIDLDPFGNPTRFLD--AAVSSLRDGGLLLVTCTDMAVL 49 (75)
Q Consensus 13 ~IDlDPfGSp~pfld--sA~~av~~gGll~vTaTD~a~L 49 (75)
.||+=-.-+|.|++. .|++.++.|..|.|.++|-.+.
T Consensus 12 ~lD~rGl~CP~Pvl~~kkal~~l~~G~~l~V~~dd~~a~ 50 (82)
T 3lvj_C 12 TLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATT 50 (82)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTSCTTCEEEEEECCTTHH
T ss_pred EEECCCCCCCHHHHHHHHHHHhCCCCCEEEEEECCccHH
Confidence 344444448899875 4666677899999999998774
No 198
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=36.71 E-value=2 Score=26.27 Aligned_cols=41 Identities=12% Similarity=0.229 Sum_probs=37.7
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 17 ~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 57 (191)
T 4aci_A 17 QEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFGD 57 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHHCCC
Confidence 46789999999999999999999999999999999988876
No 199
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=36.42 E-value=3.2 Score=25.37 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=36.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+= +|-.|.+--+|-.+..-|+.|++
T Consensus 12 ~~Il~aA~~lf~~~G~~-~t~~~IA~~aGvs~~tly~~F~s 51 (190)
T 3jsj_A 12 ERLLEAAAALTYRDGVG-IGVEALCKAAGVSKRSMYQLFES 51 (190)
T ss_dssp HHHHHHHHHHHHHHCTT-CCHHHHHHHHTCCHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHHcCC
Confidence 45789999999999999 99999999999999999988875
No 200
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=36.42 E-value=35 Score=23.77 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=26.0
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+| +|.-|++ ..++.++++++.+|-+.+..
T Consensus 241 ~g~D~v-id~~g~~-~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 241 CKPEVT-IECTGAE-ASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp SCCSEE-EECSCCH-HHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEE-EECCCCh-HHHHHHHHHhcCCCEEEEEe
Confidence 357877 7888865 46788999999999887654
No 201
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=36.25 E-value=2.2 Score=26.20 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=36.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 16 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 55 (202)
T 3lwj_A 16 KILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYNYFVD 55 (202)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 4789999999999999999999999999999999988875
No 202
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=36.17 E-value=2.5 Score=25.55 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=36.7
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 12 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 51 (194)
T 2g7s_A 12 DILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPS 51 (194)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHHcCC
Confidence 4689999999999999999999999999999999888876
No 203
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=36.03 E-value=17 Score=22.63 Aligned_cols=38 Identities=21% Similarity=0.191 Sum_probs=27.8
Q ss_pred CCCceeeeCC----C--CCchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLDP----F--GNPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlDP----f--GSp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=... + ..+..+|..+.+.++.||.+.++.-..
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 101 KRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp CCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred CCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 5678775521 1 246789999999999999999986433
No 204
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=35.82 E-value=2.7 Score=25.92 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=36.9
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 22 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 61 (212)
T 1pb6_A 22 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCC
Confidence 5799999999999999999999999999999999888876
No 205
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=35.49 E-value=2.7 Score=26.33 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=36.4
Q ss_pred hhHHHHHHhcc-cCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLR-DGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~-~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..+++|++.+. ..|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 15 ~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~s 55 (220)
T 3lsj_A 15 ALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSD 55 (220)
T ss_dssp HHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSS
T ss_pred HHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 47899999999 99999999999999999998888887775
No 206
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=35.41 E-value=31 Score=23.97 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCCceeee--------CCCCCchhhHHHHHHhcccCcEEEEEecCccccc
Q psy4127 9 RHFDAIDL--------DPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLC 50 (75)
Q Consensus 9 ~~fD~IDl--------DPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~ 50 (75)
+.||+|-. ++- ....+|...-+.||+||++.++.-+...+.
T Consensus 128 ~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~ 176 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTMDGDKLS 176 (302)
T ss_dssp SCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEECHHHHT
T ss_pred CCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence 57899852 222 236788888999999999999877654443
No 207
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=35.36 E-value=21 Score=20.10 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=28.4
Q ss_pred eeeeCCCCCchhhHHH--HHHhcccCcEEEEEecCcccc
Q psy4127 13 AIDLDPFGNPTRFLDA--AVSSLRDGGLLLVTCTDMAVL 49 (75)
Q Consensus 13 ~IDlDPfGSp~pflds--A~~av~~gGll~vTaTD~a~L 49 (75)
.||+=-.-+|.|++.. |++.++.|..|-|.++|-.+.
T Consensus 8 ~lD~rGl~CP~Pvl~~k~al~~l~~G~~L~V~~dd~~a~ 46 (78)
T 1pav_A 8 VIDARGSYCPGPLMELIKAYKQAKVGEVISVYSTDAGTK 46 (78)
T ss_dssp CCCBSSCSSCTTHHHHHHHHTTSCTTCCEECCBSSSCHH
T ss_pred EEECCCCCCCHHHHHHHHHHHcCCCCCEEEEEECCccHH
Confidence 3566566688888764 667778899999999998763
No 208
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=35.30 E-value=21 Score=23.27 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=25.5
Q ss_pred CCCCceeeeCC-----CC---CchhhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLDP-----FG---NPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlDP-----fG---Sp~pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=... +. ....+|..+.+.++.||.+.++
T Consensus 108 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 108 GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 35688886542 22 2236788888999999999996
No 209
>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*
Probab=35.15 E-value=20 Score=24.55 Aligned_cols=30 Identities=27% Similarity=0.584 Sum_probs=24.3
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT 42 (75)
.+|+| +|.-|. +-++.++++++++|-+.+-
T Consensus 217 ~~d~v-id~~g~--~~~~~~~~~l~~~G~iv~~ 246 (330)
T 1tt7_A 217 QWQGA-VDPVGG--KQLASLLSKIQYGGSVAVS 246 (330)
T ss_dssp CEEEE-EESCCT--HHHHHHHTTEEEEEEEEEC
T ss_pred CccEE-EECCcH--HHHHHHHHhhcCCCEEEEE
Confidence 46766 888897 4689999999999987654
No 210
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=35.10 E-value=2 Score=26.33 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=37.1
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~s 54 (203)
T 3b81_A 14 TELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSS 54 (203)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHHcCC
Confidence 35799999999999999999999999999998888887775
No 211
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=35.07 E-value=2.8 Score=26.28 Aligned_cols=40 Identities=23% Similarity=0.217 Sum_probs=37.0
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 27 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 66 (214)
T 2zb9_A 27 EVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPS 66 (214)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 4689999999999999999999999999999999988876
No 212
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=34.84 E-value=26 Score=25.32 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.8
Q ss_pred CCCCceeeeCC-CCC--------chhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDP-FGN--------PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDP-fGS--------p~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=.|| |.. ...++..+.+.++.||.+.+.+..
T Consensus 290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 35799998764 431 125799999999999999997643
No 213
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=34.75 E-value=21 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=27.2
Q ss_pred CCCceeee----CCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDL----DPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDl----DPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=. .-+..+..+|..+.+.+|+||.|.++...
T Consensus 149 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 149 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 45777643 22344678899999999999999998543
No 214
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=34.70 E-value=3.6 Score=25.69 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=36.4
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-+++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 16 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~ 55 (189)
T 3vp5_A 16 RVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFED 55 (189)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCCC
Confidence 5689999999999999999999999999999988887765
No 215
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=34.53 E-value=36 Score=24.17 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=18.5
Q ss_pred CCceeeeCC--CCCchhhHHHHHHhcccCc-EEEEE
Q psy4127 10 HFDAIDLDP--FGNPTRFLDAAVSSLRDGG-LLLVT 42 (75)
Q Consensus 10 ~fD~IDlDP--fGSp~pfldsA~~av~~gG-ll~vT 42 (75)
.||+|=+|| +|. ...+++.++.+| ++++|
T Consensus 295 ~fD~Vv~dPPr~g~----~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 295 QCETIFVDPPRSGL----DSETEKMVQAYPRILYIS 326 (369)
T ss_dssp CEEEEEECCCTTCC----CHHHHHHHTTSSEEEEEE
T ss_pred CCCEEEECcCcccc----HHHHHHHHhCCCEEEEEE
Confidence 699999998 343 334556665555 55555
No 216
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=34.52 E-value=19 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=26.5
Q ss_pred CCCCceeeeCC----CC--CchhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP----FG--NPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP----fG--Sp~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=... +. .+..+|..+.+.++.||.+.++.-
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 142 (211)
T 3e23_A 100 IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYK 142 (211)
T ss_dssp CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence 35678775542 11 345788999999999999999843
No 217
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=34.38 E-value=2 Score=26.18 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=36.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|++
T Consensus 11 ~Il~aA~~l~~~~G~~~~s~~~IA~~agvs~~tly~~F~s 50 (180)
T 2fd5_A 11 RILGAATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQS 50 (180)
T ss_dssp HHHHHHHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCSC
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCccHHHHHCCC
Confidence 4689999999999999999999999999999888888775
No 218
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=34.36 E-value=2.6 Score=25.83 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=36.5
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|++
T Consensus 12 ~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~s 51 (194)
T 3dpj_A 12 QIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKT 51 (194)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHcCC
Confidence 4689999999999999999999999999999998888875
No 219
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=34.28 E-value=19 Score=22.38 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=25.3
Q ss_pred CCCceeeeC-CC-----CCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLD-PF-----GNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlD-Pf-----GSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.. .+ ..+..++..+.+.+++||.+.++.-
T Consensus 88 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 88 ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp TCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 458877642 11 2245677888899999999998753
No 220
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=34.21 E-value=18 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCceeeeCCCCCch-------------hhHHHHHHhcccCcEEEEE
Q psy4127 10 HFDAIDLDPFGNPT-------------RFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 10 ~fD~IDlDPfGSp~-------------pfldsA~~av~~gGll~vT 42 (75)
.+|+| +|.-|.+. ..++.++++++++|-+.+-
T Consensus 254 g~Dvv-id~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 254 EVDCG-VDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp CEEEE-EECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred CCCEE-EECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 57877 78888753 4689999999999987654
No 221
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=34.19 E-value=32 Score=23.25 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCCceeeeCC-C---CCchh---hHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP-F---GNPTR---FLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP-f---GSp~p---fldsA~~av~~gGll~vTa 43 (75)
+.||+|=... + ..+.. ++..+.+.++.||.+.++.
T Consensus 186 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 5688887643 2 23443 7899999999999999965
No 222
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=34.18 E-value=2.1 Score=25.95 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=36.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (195)
T 3pas_A 12 AFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYED 51 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHHcCC
Confidence 4689999999999999999999999999999988888876
No 223
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=34.10 E-value=20 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.419 Sum_probs=25.9
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+| +|.-|. +.++.++++++++|-+.+-.
T Consensus 216 ~g~D~v-id~~g~--~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 216 KGVDAS-FDSVGK--DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp SCEEEE-EECCGG--GGHHHHHHHEEEEEEEEECC
T ss_pred CCceEE-EECCCh--HHHHHHHHHhccCCEEEEEc
Confidence 357877 788885 77899999999999887754
No 224
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=34.03 E-value=3.3 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 14 ~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 54 (216)
T 3f0c_A 14 ELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPD 54 (216)
T ss_dssp HHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcCC
Confidence 45799999999999999999999999999999988888876
No 225
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=33.55 E-value=3.4 Score=25.96 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=36.9
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 32 ~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~~F~s 71 (215)
T 2qko_A 32 ALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASNYFPS 71 (215)
T ss_dssp HHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHHHCSC
T ss_pred HHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHHhCCC
Confidence 4799999999999999999999999999999998888876
No 226
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Probab=33.39 E-value=20 Score=25.01 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++.+|-+.+..
T Consensus 242 g~Dvv-id~~g~~-~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 242 QMDFI-YEATGFP-KHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CEEEE-EECSCCH-HHHHHHHHHEEEEEEEEECC
T ss_pred CCCEE-EECCCCh-HHHHHHHHHHhcCCEEEEEe
Confidence 47777 8888964 46888999999999877654
No 227
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=33.34 E-value=20 Score=23.07 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=25.9
Q ss_pred CCCceeeeCC----C--CCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDP----F--GNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDP----f--GSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=... + ..+..+|..+.+.+++||.+.++..
T Consensus 119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 4577765431 1 3456778889999999999999854
No 228
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=33.34 E-value=20 Score=22.52 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=26.7
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.. -+..+..+|..+.+.++.||.+.++.-
T Consensus 105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 144 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDW 144 (219)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEe
Confidence 457877542 123467899999999999999999753
No 229
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=33.26 E-value=4 Score=25.56 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=36.1
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+= +|-.|.+--.|-++..-|+.|++
T Consensus 16 ~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~~F~s 54 (224)
T 1t33_A 16 QLIAAALAQFGEYGLH-ATTRDIAALAGQNIAAITYYFGS 54 (224)
T ss_dssp HHHHHHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHhcCC
Confidence 4689999999999999 99999999999999999998876
No 230
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=33.16 E-value=2.3 Score=25.93 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=36.0
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 11 ~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 50 (199)
T 3qbm_A 11 RVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFES 50 (199)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCC
Confidence 4689999999999999999999999999998888887765
No 231
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=33.15 E-value=17 Score=23.02 Aligned_cols=36 Identities=22% Similarity=0.484 Sum_probs=25.9
Q ss_pred CCCceeeeCC--CC------CchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDP--FG------NPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDP--fG------Sp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=... +. .+..+|..+.+.+++||.+.++..
T Consensus 100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 4688886643 21 245678888899999999998543
No 232
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=33.14 E-value=2.3 Score=26.16 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=36.7
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 18 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 57 (215)
T 3e7q_A 18 LLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDG 57 (215)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4789999999999999999999999999999988888775
No 233
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=33.13 E-value=30 Score=25.39 Aligned_cols=21 Identities=38% Similarity=0.755 Sum_probs=16.9
Q ss_pred hhHHHHHHhcccCcEEEE-Eec
Q psy4127 24 RFLDAAVSSLRDGGLLLV-TCT 44 (75)
Q Consensus 24 pfldsA~~av~~gGll~v-TaT 44 (75)
.+|+.+.+.+|.||.|.+ |+|
T Consensus 370 ~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 370 ELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp HHHHHHHTTEEEEEEEEEEESC
T ss_pred HHHHHHHHhcCCCcEEEEEeCC
Confidence 579999999999997754 554
No 234
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=33.05 E-value=3.4 Score=25.08 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=36.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~s 45 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKT 45 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCC
Confidence 4689999999999999999999999999999998888875
No 235
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=33.02 E-value=41 Score=27.38 Aligned_cols=38 Identities=24% Similarity=0.138 Sum_probs=31.3
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccc
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVL 49 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L 49 (75)
-|++||+-.+=+|..++++|.+. +--+++++++++..+
T Consensus 624 GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~ 661 (727)
T 1req_A 624 GFDVDVGPLFQTPEETARQAVEA--DVHVVGVSSLAGGHL 661 (727)
T ss_dssp TCEEEECCTTBCHHHHHHHHHHT--TCSEEEEEECSSCHH
T ss_pred CeEEEeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHhHH
Confidence 59999999999999999988876 334999999887543
No 236
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=32.89 E-value=4.3 Score=26.05 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 16 ~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y~~F~s 56 (231)
T 2qib_A 16 QQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVYHYFPG 56 (231)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCCC
Confidence 35799999999999999999999999999999999988875
No 237
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=32.82 E-value=60 Score=22.20 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=16.9
Q ss_pred hhHHHHH-HhcccCcEEEEE
Q psy4127 24 RFLDAAV-SSLRDGGLLLVT 42 (75)
Q Consensus 24 pfldsA~-~av~~gGll~vT 42 (75)
.|+...+ +.++.||++.+.
T Consensus 229 ~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 229 DFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp HHHHHHHHHCCCTTCEEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEE
Confidence 6888899 999999999985
No 238
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=32.68 E-value=14 Score=25.33 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCcccccCCCh
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTP 54 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~G~~~ 54 (75)
..++||+.+ ||+ ..+ ..|.+| |||+|.+.++|.+|
T Consensus 14 ~~~i~~~~Q-~s~-eWl-----~~R~~~---ItaS~~~~ilg~~~ 48 (229)
T 3sm4_A 14 GIDVRAVEQ-GDD-AWH-----KLRLGV---ITASEVHNVIAKPR 48 (229)
T ss_dssp SCCTTCCCS-SSH-HHH-----HHTTTC---EEGGGTHHHHCCCS
T ss_pred CceEEECCC-CCH-HHH-----HHHCCC---ccHhHHHHHHCCCC
Confidence 478889887 775 333 467776 89999999999875
No 239
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=32.67 E-value=39 Score=23.72 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccC-cEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDG-GLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~g-Gll~vTa 43 (75)
.+|+| +|.-|++ ..++.+++++++| |.+.+-.
T Consensus 263 g~D~v-id~~g~~-~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 263 GVDYS-FECIGNV-SVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp CBSEE-EECSCCH-HHHHHHHHTBCTTTCEEEECS
T ss_pred CCCEE-EECCCCH-HHHHHHHHHhhccCCEEEEEc
Confidence 57877 7888975 4578899999996 8776654
No 240
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=32.65 E-value=2.6 Score=26.01 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=37.8
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|++
T Consensus 11 ~~Il~AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~s 51 (195)
T 3frq_A 11 DEVLEAATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFTN 51 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 56799999999999999999999999999999999988876
No 241
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=32.58 E-value=48 Score=21.91 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=25.2
Q ss_pred CCceeeeCCCC-CchhhHHHHHH-hcccCcEEEEEec
Q psy4127 10 HFDAIDLDPFG-NPTRFLDAAVS-SLRDGGLLLVTCT 44 (75)
Q Consensus 10 ~fD~IDlDPfG-Sp~pfldsA~~-av~~gGll~vTaT 44 (75)
.||+|=+|.-- ....+|..+.+ .+|.||+|.+.-+
T Consensus 152 ~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 152 AHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp CSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 59988877532 23456666775 9999999999654
No 242
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=32.53 E-value=3.6 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=38.4
Q ss_pred chhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
+..-|++|++.....|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 9 ~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (192)
T 2zcm_A 9 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDN 50 (192)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCC
Confidence 457899999999999999999999999999999999988876
No 243
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=32.48 E-value=43 Score=22.99 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=25.6
Q ss_pred CCCceeeeCCCC--CchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFG--NPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfG--Sp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+|=.|..= -+..++..+.+.+|+||.+.|.-
T Consensus 146 ~~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 146 EGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 457776666543 23458888999999999999863
No 244
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=32.19 E-value=4.6 Score=25.92 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=37.0
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 48 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~s 87 (236)
T 3q0w_A 48 AILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPS 87 (236)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHCCC
Confidence 5799999999999999999999999999999988888875
No 245
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=32.15 E-value=37 Score=23.88 Aligned_cols=33 Identities=3% Similarity=-0.039 Sum_probs=25.6
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+| +|.-|++ ..++.++++++++|-+.+..
T Consensus 238 ~g~Dvv-id~~g~~-~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 238 GAPAFV-FSTTHTD-KHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp CCEEEE-EECSCHH-HHHHHHHHHSCTTCEEEECS
T ss_pred CCceEE-EECCCch-hhHHHHHHHhcCCCEEEEEC
Confidence 357766 7888854 46788999999999988763
No 246
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=32.07 E-value=53 Score=22.73 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=25.9
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+| +|.-|++ ..++.++++++.+|-+.+..
T Consensus 239 ~g~D~v-id~~g~~-~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 239 DLPNVT-IDCSGNE-KCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SCCSEE-EECSCCH-HHHHHHHHHSCTTCEEEECS
T ss_pred CCCCEE-EECCCCH-HHHHHHHHHHhcCCEEEEEe
Confidence 358887 7888864 46788999999999887654
No 247
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D
Probab=32.00 E-value=21 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=22.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT 42 (75)
.+|+| +| -|. +.+..++++++.+|-+.+.
T Consensus 189 ~~d~v-id-~g~--~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 189 GLDLV-LE-VRG--KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp SEEEE-EE-CSC--TTHHHHHTTEEEEEEEEEC
T ss_pred CceEE-EE-CCH--HHHHHHHHhhccCCEEEEE
Confidence 46665 66 786 6789999999999977654
No 248
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=31.74 E-value=26 Score=22.81 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=25.5
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.. -+..+..+|..+.+.+|.||.+.++..
T Consensus 102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~ 141 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDN 141 (260)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 456766432 123456889999999999999999743
No 249
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=31.67 E-value=29 Score=21.93 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=24.5
Q ss_pred CCCceeeeCC----CCCc--hhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDP----FGNP--TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp--~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=..- +..+ ..+|+.+.+.++.||++.+|-.
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 101 HGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp CSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 4688775321 1223 5788888899999998877643
No 250
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Probab=31.63 E-value=18 Score=25.42 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=26.2
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|.+..-++.++++++++|-+.+..
T Consensus 248 g~D~v-id~~g~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 248 PFDFI-LDNVGGSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp CBSEE-EESSCTTHHHHGGGGBCSSSCCEEEESC
T ss_pred CCCEE-EECCCChhhhhHHHHHhhcCCcEEEEeC
Confidence 47877 8999987555688999999999876644
No 251
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=31.63 E-value=2.7 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=36.7
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 11 ~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 50 (186)
T 2jj7_A 11 NILKAAKKKFGERGYEGTSIQEIAKEAKVNVAMASYYFNG 50 (186)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCChhhhhhhcCC
Confidence 4689999999999999999999999999999999988875
No 252
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=31.54 E-value=22 Score=22.80 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCceeeeCC-C-----CCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP-F-----GNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP-f-----GSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=.-. + -.+..+|..+.+.++.||.+.++.
T Consensus 157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 197 (254)
T 1xtp_A 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 4577764321 1 114577888889999999999975
No 253
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=31.46 E-value=2.1 Score=26.02 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=36.6
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 13 ~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 53 (197)
T 3rd3_A 13 QHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKS 53 (197)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSC
T ss_pred HHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcCC
Confidence 45789999999999999999999999999998888887765
No 254
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=31.27 E-value=3.7 Score=25.62 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=37.1
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 19 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~s 58 (221)
T 3c2b_A 19 AVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGD 58 (221)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 5799999999999999999999999999999999988876
No 255
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=31.22 E-value=22 Score=22.96 Aligned_cols=35 Identities=6% Similarity=0.147 Sum_probs=26.0
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=.. -+..+..+|..+.+.++.||.|.++.
T Consensus 107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 467776432 12346789999999999999999974
No 256
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=31.04 E-value=2.8 Score=25.53 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=36.9
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 11 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (206)
T 3dew_A 11 SRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGG 51 (206)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCH
T ss_pred HHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 35689999999999999999999999999999988888765
No 257
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=30.89 E-value=25 Score=24.49 Aligned_cols=31 Identities=42% Similarity=0.684 Sum_probs=23.9
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ .++.++++++++|-+.+..
T Consensus 227 g~Dvv-id~~g~~--~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 227 GVDMV-VDPIGGP--AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp CEEEE-EESCC----CHHHHHHTEEEEEEEEEC-
T ss_pred CceEE-EECCchh--HHHHHHHhhcCCCEEEEEE
Confidence 57877 7888864 7899999999999887654
No 258
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=30.89 E-value=20 Score=25.18 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+|+| +|.-| .+.++.++++++++|-+.+...
T Consensus 257 g~D~v-id~~g--~~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 257 GADHI-LEIAG--GAGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp CEEEE-EEETT--SSCHHHHHHHEEEEEEEEEECC
T ss_pred CceEE-EECCC--hHHHHHHHHHhhcCCEEEEEec
Confidence 57776 77778 3678899999999998877653
No 259
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=30.78 E-value=24 Score=21.83 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=18.8
Q ss_pred hhhHHHHHHhcccCcEEEEEec
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaT 44 (75)
..+|..+.+.++.||.+.+..-
T Consensus 139 ~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 139 DQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHHHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHHHhCcCCCEEEEEeC
Confidence 6788899999999999988653
No 260
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=30.70 E-value=34 Score=22.02 Aligned_cols=38 Identities=8% Similarity=0.260 Sum_probs=27.3
Q ss_pred CCCCceeeeC----CCCCc--hhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLD----PFGNP--TRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlD----PfGSp--~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=.. -+..+ ..+|..+.+.+|+||.+.++.-.
T Consensus 99 ~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (240)
T 3dli_A 99 DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN 142 (240)
T ss_dssp TTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred CCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 3568877532 23333 67899999999999999997644
No 261
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=30.69 E-value=66 Score=21.04 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=26.0
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEecCc
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaTD~ 46 (75)
+.||+|=.- -+..+..+|..+.+.+| ||.+.+..-+.
T Consensus 93 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 93 KSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp TCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred CCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 568877532 23456788999999999 99666655543
No 262
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=30.43 E-value=3.6 Score=25.38 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=37.4
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 57 (212)
T 3knw_A 17 QHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFES 57 (212)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCCC
Confidence 45789999999999999999999999999999999988875
No 263
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=30.08 E-value=4 Score=25.66 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=37.3
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 11 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~s 51 (202)
T 2d6y_A 11 ARIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGN 51 (202)
T ss_dssp HHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 35689999999999999999999999999999999988875
No 264
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=30.00 E-value=36 Score=22.97 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCCceeeeC-C---CC--CchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLD-P---FG--NPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlD-P---fG--Sp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.. . ++ .+..+|..+.+.+++||.+.++.-.
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 458876432 2 22 3467899999999999999986543
No 265
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Probab=29.78 E-value=48 Score=22.68 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=25.9
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
.+|+| +|.-|+ +.+..++++++++|-+.+...
T Consensus 209 g~Dvv-id~~g~--~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 209 KCPVV-YDGVGQ--DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp CEEEE-EESSCG--GGHHHHHTTEEEEEEEEECCC
T ss_pred CceEE-EECCCh--HHHHHHHHHhcCCCEEEEEec
Confidence 57776 788886 678899999999998887654
No 266
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=29.64 E-value=25 Score=22.30 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=25.8
Q ss_pred CCCceeeeC-C---CCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLD-P---FGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlD-P---fGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.. . +-.+..+|..+.+.++.||.+.++.-
T Consensus 106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 457776432 1 22467889999999999999998753
No 267
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=29.59 E-value=3.2 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=36.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~s 54 (212)
T 2ras_A 15 RLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFET 54 (212)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHcCC
Confidence 5789999999999999999999999999998888887765
No 268
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=29.52 E-value=24 Score=25.73 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=26.2
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+| +|.-|+ +.++.++++++.+|-+.+-.
T Consensus 313 ~g~Dvv-id~~G~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 313 EDIDIV-FEHPGR--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp CCEEEE-EECSCH--HHHHHHHHHEEEEEEEEESC
T ss_pred CCCcEE-EEcCCc--hhHHHHHHHhhCCcEEEEEe
Confidence 367877 888886 77899999999999887653
No 269
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=29.48 E-value=2.9 Score=25.62 Aligned_cols=40 Identities=25% Similarity=0.284 Sum_probs=36.5
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 24 ~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 63 (203)
T 3mnl_A 24 RILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFPS 63 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHHcCC
Confidence 4789999999999999999999999999998888888775
No 270
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=29.27 E-value=28 Score=21.28 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=24.0
Q ss_pred CCCceeeeC-CCC-----CchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLD-PFG-----NPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlD-PfG-----Sp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=.. .+. .+..+|..+.+.+++||.+.+..
T Consensus 96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 96 RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 457776332 221 34568888899999999977754
No 271
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=29.14 E-value=8.4 Score=25.20 Aligned_cols=48 Identities=25% Similarity=0.401 Sum_probs=32.6
Q ss_pred cCCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCccccc-C----CChhHHHHHhcCcc
Q psy4127 7 RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLC-G----NTPETCYVKYNAVS 65 (75)
Q Consensus 7 ~~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~-G----~~~~~~~r~Yg~~~ 65 (75)
++++|.|+-+|+-|.- + .-|+|-||.+++-.+. + .-|-.|+|+||...
T Consensus 10 ~~~~F~V~~~~~~~~e---~--------g~~~L~lt~~~L~L~~~~~~~~~Wp~~~LRrYG~d~ 62 (129)
T 1xr0_B 10 HRNKFKVINVDDDGNE---L--------GSGIMELTDTELILYTRKRDSVKWHYLCLRRYGYDS 62 (129)
T ss_dssp CCCEEEEEEECSSCCC---C--------CCEEEEECSSCEEEEETTTEEEEECSTTEEEEEECS
T ss_pred ccCEEEEEEeCCCCCc---c--------eeEEEEEecCEEEEEeCCCCeeEcchHHhhhcCccC
Confidence 5678999999986642 1 3477777777764433 1 24677899999654
No 272
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=29.11 E-value=3 Score=27.15 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=36.4
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 50 ~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~s 89 (245)
T 3aqt_A 50 RLITSARTLMAERGVDNVGIAEITEGANIGTGTFYNYFPD 89 (245)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSS
T ss_pred HHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHHHcCC
Confidence 4789999999999999999999999999998888887765
No 273
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=29.06 E-value=38 Score=21.72 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=19.0
Q ss_pred chhhHHHHHHhcccCcEEEEEec
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTaT 44 (75)
+..+|..+.+.+|.||.|.+..-
T Consensus 142 ~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 142 RELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEeC
Confidence 45789999999999998877654
No 274
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A
Probab=29.05 E-value=45 Score=23.99 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+| +|.-|. +.++.++++++.+|-+.+..
T Consensus 305 ~g~Dvv-id~~G~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 305 REPDIV-FEHTGR--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp SCCSEE-EECSCH--HHHHHHHHHSCTTCEEEESC
T ss_pred CCceEE-EECCCc--hHHHHHHHHHhcCCEEEEEe
Confidence 458887 888886 57899999999999887754
No 275
>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}
Probab=28.96 E-value=30 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.289 Sum_probs=24.2
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT 42 (75)
.+|+| +|.-|++ ..++.++++++.+|-+...
T Consensus 217 g~Dvv-~d~~g~~-~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 217 LVDYV-FCTFNTD-MYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp CEEEE-EESSCHH-HHHHHHHHHEEEEEEEEES
T ss_pred CccEE-EECCCch-HHHHHHHHHhccCCEEEEE
Confidence 57766 7888853 5678999999999998654
No 276
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=28.95 E-value=31 Score=21.68 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=24.6
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.+.-- ..+.+.+.+.++.||.|.++.-+
T Consensus 145 ~~fD~v~~~~~~--~~~~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 145 APYDRIYTTAAG--PKIPEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp CCEEEEEESSBB--SSCCHHHHHTEEEEEEEEEEESS
T ss_pred CCeeEEEECCch--HHHHHHHHHHcCCCcEEEEEECC
Confidence 468888665322 23447888999999999987643
No 277
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=28.86 E-value=30 Score=21.70 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=25.8
Q ss_pred CCCCceeeeCC----CCCc---hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP----FGNP---TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP----fGSp---~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=... +..+ ..+|..+.+.++.||.+.++..
T Consensus 112 ~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 112 AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 34678776531 1233 3568889999999999999754
No 278
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=28.67 E-value=32 Score=22.08 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCCceeeeC-C---CCCchhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLD-P---FGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlD-P---fGSp~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=.. . +..+..++..+.+.++.||.+.++
T Consensus 103 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 103 ESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp TCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 457776442 1 124578899999999999999998
No 279
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=28.47 E-value=4.1 Score=25.61 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=36.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--.|-.+.+-|+.|+.
T Consensus 16 ~Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF~~ 55 (198)
T 3cjd_A 16 KLIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQD 55 (198)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHHhCC
Confidence 4789999999999999999999999999999999988875
No 280
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=28.42 E-value=26 Score=22.93 Aligned_cols=38 Identities=26% Similarity=0.426 Sum_probs=26.6
Q ss_pred CCCCceeeeCC-C-------CCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 8 GRHFDAIDLDP-F-------GNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 8 ~~~fD~IDlDP-f-------GSp~pfldsA~~av~~gGll~vTaTD 45 (75)
.+.||+|=..- + ..+..+|..+.+.+++||.+.++.-+
T Consensus 131 ~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 34688875431 1 22356888888999999999998654
No 281
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=28.37 E-value=14 Score=24.52 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=38.1
Q ss_pred chhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
-..-|++|++.+...|+=.+|=.+.+--.|-.+.+-|+.|+.
T Consensus 31 r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~ 72 (241)
T 2hxi_A 31 TEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFRN 72 (241)
T ss_dssp HHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcCC
Confidence 356799999999999999999999999999999999988875
No 282
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=28.24 E-value=4.2 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=36.9
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 52 ~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 52 AIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHHHcCC
Confidence 4799999999999999999999999999999988888775
No 283
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=28.16 E-value=3.3 Score=25.64 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=36.7
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.....|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 16 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~s 56 (217)
T 3nrg_A 16 SRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFAD 56 (217)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTCSS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHcCC
Confidence 35689999999999999999999999999998888887765
No 284
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=28.14 E-value=10 Score=23.83 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=30.9
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+=.+|=.|.+--.|-.+.+-|+.|++
T Consensus 27 ~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvskgtlY~yF~s 67 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQRFTTARVAERAGVSIGSLYQYFPN 67 (214)
T ss_dssp HHHHHHHHHC------CCCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhhCcccccHHHHHHHhCCCCchHHHhCCC
Confidence 34799999999999999999999999999998888887765
No 285
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Probab=28.08 E-value=28 Score=24.36 Aligned_cols=33 Identities=27% Similarity=0.434 Sum_probs=24.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++..+++.+++.++.+|-+.+..
T Consensus 246 ~~d~v-id~~g~~~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 246 KFDVI-IDATGADVNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp CEEEE-EECCCCCTHHHHHHGGGEEEEEEEEECS
T ss_pred CCCEE-EECCCChHHHHHHHHHHHhcCCEEEEEe
Confidence 46776 7888876444388999999999876543
No 286
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=28.07 E-value=24 Score=22.75 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=18.3
Q ss_pred chhhHHHHHHhcccCcEEEEEe
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTa 43 (75)
+..+|..+.+.+++||.|.++.
T Consensus 177 ~~~~l~~~~~~LkpgG~li~~~ 198 (265)
T 2i62_A 177 YRTALRNLGSLLKPGGFLVMVD 198 (265)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCCCCcEEEEEe
Confidence 4567788889999999998875
No 287
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}
Probab=28.04 E-value=35 Score=23.44 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=24.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|. ..++.++++++++|-+.+..
T Consensus 214 ~~d~v-i~~~g~--~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 214 GVDVV-YDSIGK--DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp CEEEE-EECSCT--TTHHHHHHTEEEEEEEEECC
T ss_pred CCeEE-EECCcH--HHHHHHHHhhccCCEEEEEe
Confidence 46766 678886 77899999999999876654
No 288
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Probab=27.94 E-value=30 Score=23.99 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=25.1
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ .+..++++++++|-+.+-.
T Consensus 233 g~D~v-id~~g~~--~~~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 233 QPRIF-LDAVTGP--LASAIFNAMPKRARWIIYG 263 (349)
T ss_dssp CCCEE-EESSCHH--HHHHHHHHSCTTCEEEECC
T ss_pred CCcEE-EECCCCh--hHHHHHhhhcCCCEEEEEe
Confidence 58887 8888864 4588999999999887754
No 289
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=27.91 E-value=30 Score=21.64 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=24.9
Q ss_pred CCCceeeeCC----CCCch---hhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP----FGNPT---RFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~---pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=... +-.+. .+|..+.+.++.||.|.++.
T Consensus 100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 141 (235)
T 3sm3_A 100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141 (235)
T ss_dssp TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 4577665421 11344 78999999999999999874
No 290
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=27.78 E-value=2.5 Score=25.55 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=36.7
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..+++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 10 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 10 KILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHccc
Confidence 5689999999999999999999999999999999988873
No 291
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=27.43 E-value=2.8 Score=25.52 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=37.4
Q ss_pred chhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
-...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 51 (183)
T 1zk8_A 10 LQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKG 51 (183)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCC
Confidence 356899999999999999999999999999998888887765
No 292
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=27.36 E-value=28 Score=24.87 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=27.2
Q ss_pred CCCceeeeCCCCC-------chhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGN-------PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGS-------p~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.++.+. +..++...-+.++.||++.++...
T Consensus 128 ~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 128 EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 6799999988543 334666666889999999776543
No 293
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=26.79 E-value=7 Score=24.03 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=36.0
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+= +|=.|.+--+|-.+..-|+.|+.
T Consensus 18 ~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tlY~~F~s 57 (194)
T 2q24_A 18 DKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLYRNFPT 57 (194)
T ss_dssp HHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHHHHCCS
T ss_pred HHHHHHHHHHHHhcCcC-CCHHHHHHHhCCChHHHHHHcCC
Confidence 56899999999999996 99999999999999998888875
No 294
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=26.77 E-value=34 Score=23.74 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++.- ..++++++.+|-+.+-.
T Consensus 245 g~Dvv-id~~G~~~~--~~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 245 EAKLA-LNCVGGKSS--TGIARKLNNNGLMLTYG 275 (364)
T ss_dssp CEEEE-EESSCHHHH--HHHHHTSCTTCEEEECC
T ss_pred CceEE-EECCCchhH--HHHHHHhccCCEEEEec
Confidence 57776 788886543 37899999999876643
No 295
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=26.75 E-value=39 Score=21.23 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=23.9
Q ss_pred CCCceeeeC----CCCCc--hhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLD----PFGNP--TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp--~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.. -+..+ ..+|..+.+.+|.||++.++-.
T Consensus 101 ~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 142 (219)
T 3jwg_A 101 SGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPN 142 (219)
T ss_dssp TTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccc
Confidence 468877421 12222 4788888999999997776643
No 296
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=26.74 E-value=4 Score=25.29 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=36.8
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|=.|.+--.|-.+..-|+.|+.
T Consensus 16 ~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~s 56 (195)
T 2iu5_A 16 KIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFYNYFQN 56 (195)
T ss_dssp HHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGGGTCSS
T ss_pred HHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHHHHcCC
Confidence 45799999999999999999999999999998888887765
No 297
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=26.69 E-value=7.4 Score=25.08 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=36.8
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|=.|.+--.|-.+..-|+.|+.
T Consensus 10 ~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~ 50 (213)
T 3ni7_A 10 DAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFRE 50 (213)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHCCC
Confidence 34689999999999999999999999999999888888875
No 298
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=26.68 E-value=54 Score=23.12 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=25.4
Q ss_pred CCCceeeeCCCCCc---------------hhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNP---------------TRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp---------------~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=.|+.=.. ...|..+.+.+|.||.+.+.-
T Consensus 122 ~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~ 171 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 171 (290)
T ss_dssp SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 46999988864211 146777889999999999854
No 299
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1
Probab=26.55 E-value=37 Score=24.01 Aligned_cols=32 Identities=34% Similarity=0.420 Sum_probs=24.9
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++++|-+.+-.
T Consensus 267 g~Dvv-id~~g~~-~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 267 GADFI-LEATGDS-RALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp CEEEE-EECSSCT-THHHHHHHHEEEEEEEEECC
T ss_pred CCcEE-EECCCCH-HHHHHHHHHHhcCCEEEEEe
Confidence 57877 7888865 45788999999999876643
No 300
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=26.52 E-value=24 Score=23.59 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCCCceeeeCCCCC-chhhHHHHHHhcccCcEEEEEe
Q psy4127 8 GRHFDAIDLDPFGN-PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 8 ~~~fD~IDlDPfGS-p~pfldsA~~av~~gGll~vTa 43 (75)
.+.||+|=.++.-. ...++..+.+.+++||.+.++.
T Consensus 182 ~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~ 218 (254)
T 2nxc_A 182 FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 34689887665322 2467888889999999999864
No 301
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=26.38 E-value=5.2 Score=25.53 Aligned_cols=40 Identities=23% Similarity=0.260 Sum_probs=36.9
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--.|-.+..-|+.|+.
T Consensus 44 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 83 (225)
T 2id3_A 44 AVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYRRWGT 83 (225)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCC
Confidence 3799999999999999999999999999999999988876
No 302
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Probab=26.29 E-value=63 Score=22.56 Aligned_cols=33 Identities=33% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccC-cEEEEEec
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDG-GLLLVTCT 44 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~g-Gll~vTaT 44 (75)
.+|+| +|.-|++ +.++.++++++++ |-+.+...
T Consensus 265 g~Dvv-id~~G~~-~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 265 GVDYS-LDCAGTA-QTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp CBSEE-EESSCCH-HHHHHHHHTBCTTTCEEEECCC
T ss_pred CccEE-EECCCCH-HHHHHHHHHhhcCCCEEEEECC
Confidence 57777 7888864 5678999999999 98776543
No 303
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=26.21 E-value=4.8 Score=25.08 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=36.5
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~s 46 (212)
T 3rh2_A 7 KIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHFRN 46 (212)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 4689999999999999999999999999999999988875
No 304
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=26.17 E-value=49 Score=22.12 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=18.9
Q ss_pred hhhHHHHHHhcccCcEEEEEec
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaT 44 (75)
..++..+.+.+|+||.+.++.-
T Consensus 163 ~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 163 DTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp HHHHHHHHHSSCTTCEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEEE
Confidence 5788999999999999998643
No 305
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=26.08 E-value=4.3 Score=25.90 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=37.5
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 33 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 73 (226)
T 2pz9_A 33 QRIVAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFRS 73 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhCcccCcHHHHHHHHCCChHHHHHHcCC
Confidence 45799999999999999999999999999999999988875
No 306
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=25.78 E-value=34 Score=22.02 Aligned_cols=35 Identities=23% Similarity=0.418 Sum_probs=24.3
Q ss_pred CCCceeeeCC----CCCch--hhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP----FGNPT--RFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~--pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=.+- +..+. .+|..+.+.++.||.+.++-
T Consensus 145 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 145 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3688875441 11122 68888889999999999864
No 307
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}
Probab=25.78 E-value=41 Score=23.32 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=25.2
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
+.+|+| +|.-|+ +.++.++++++.+|-+.+-.
T Consensus 215 ~g~D~v-id~~g~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 215 QGFDLV-YDTLGG--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp SCEEEE-EESSCT--HHHHHHHHHEEEEEEEEESC
T ss_pred CCceEE-EECCCc--HHHHHHHHHHhcCCeEEEEc
Confidence 357766 788885 67899999999999887643
No 308
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=25.73 E-value=32 Score=21.76 Aligned_cols=35 Identities=31% Similarity=0.421 Sum_probs=25.1
Q ss_pred CCCceeeeCC--CC------CchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDP--FG------NPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDP--fG------Sp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=... +. .+..+|..+.+.+++||.+.++.
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 5688886542 22 23467888889999999999854
No 309
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=25.50 E-value=35 Score=21.10 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=25.4
Q ss_pred CCCCceeeeCC----CCCc--hhhHHHHHHhcccCcEEEEEec
Q psy4127 8 GRHFDAIDLDP----FGNP--TRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 8 ~~~fD~IDlDP----fGSp--~pfldsA~~av~~gGll~vTaT 44 (75)
.+.||+|=..- +..+ ..+|..+.+.++.||.+.++.-
T Consensus 105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 147 (218)
T 3ou2_A 105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147 (218)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 34577765421 1222 6788888899999999998854
No 310
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Probab=25.43 E-value=69 Score=22.28 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=25.0
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccC-cEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDG-GLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~g-Gll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++++ |-+.+..
T Consensus 260 g~D~v-id~~g~~-~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 260 GVDYS-FECIGNV-KVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp CBSEE-EECSCCH-HHHHHHHHTBCTTTCEEEECS
T ss_pred CCCEE-EECCCcH-HHHHHHHHhhccCCcEEEEEe
Confidence 57877 7888864 5678999999999 8876643
No 311
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=25.33 E-value=5.2 Score=25.48 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=37.5
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 31 ~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~s 71 (217)
T 3hta_A 31 QRIIDAAIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFAT 71 (217)
T ss_dssp HHHHHHHHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHcCCCcchhhhcCCC
Confidence 46799999999999999999999999999999998888875
No 312
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=25.31 E-value=5.7 Score=24.73 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=36.4
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~s 57 (204)
T 2ibd_A 18 ELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDS 57 (204)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSC
T ss_pred HHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcCC
Confidence 4689999999999999999999999999999888888775
No 313
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=25.15 E-value=42 Score=23.34 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCCceeeeCCCCC-------chhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPFGN-------PTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPfGS-------p~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=.++.|. +..++.+..+.+++||++...
T Consensus 104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 5799999887543 345666666899999999643
No 314
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=25.14 E-value=47 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=24.3
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-| .+.++.++++++.+|-+.+-.
T Consensus 209 ~~D~v-i~~~g--~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 209 KVRVV-YDSVG--RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp CEEEE-EECSC--GGGHHHHHHTEEEEEEEEECC
T ss_pred CceEE-EECCc--hHHHHHHHHHhcCCCEEEEEe
Confidence 46776 77888 577899999999999776543
No 315
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=25.07 E-value=29 Score=21.95 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=24.1
Q ss_pred CCCceee-e-CCCC------CchhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAID-L-DPFG------NPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~ID-l-DPfG------Sp~pfldsA~~av~~gGll~vT 42 (75)
+.||+|= . +.+. .+..+|..+.+.+++||.+.++
T Consensus 99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4688875 2 2221 1246788888999999999997
No 316
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=25.02 E-value=40 Score=22.26 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=26.5
Q ss_pred CCCceeeeCC----CCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDP----FGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDP----fGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=... +..+..+|..+.+.+++||.+.++...
T Consensus 116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~ 156 (279)
T 3ccf_A 116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGG 156 (279)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 3577665321 134678899999999999999987543
No 317
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=24.99 E-value=37 Score=23.39 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++++|-+.+..
T Consensus 232 ~~d~v-id~~g~~-~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 232 GAHGV-LVTAVSP-KAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp SEEEE-EESSCCH-HHHHHHHHHEEEEEEEEECS
T ss_pred CCCEE-EEeCCCH-HHHHHHHHHhccCCEEEEeC
Confidence 46766 6777864 56788999999999987754
No 318
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=24.87 E-value=8.8 Score=24.26 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=36.1
Q ss_pred hhHHHHHHh-cccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSS-LRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~a-v~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-+++|.+. +...|+=.+|-.|.+--+|-++..-|+.|+.
T Consensus 23 ~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~ 63 (185)
T 3o60_A 23 KLYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKE 63 (185)
T ss_dssp HHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 467888898 7999999999999999999999999998875
No 319
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=24.81 E-value=23 Score=22.04 Aligned_cols=37 Identities=14% Similarity=0.393 Sum_probs=26.7
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.. -+-.+..+|..+.+.++.||.+.++.-+
T Consensus 92 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 92 EQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred CccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 467877542 1234567888888999999999997544
No 320
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*
Probab=24.80 E-value=42 Score=23.51 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=24.1
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|. +.++.++++++.+|-+.+-.
T Consensus 231 g~D~v-id~~g~--~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 231 GVDVV-YESVGG--AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp CEEEE-EECSCT--HHHHHHHHHEEEEEEEEECC
T ss_pred CCCEE-EECCCH--HHHHHHHHHHhcCCEEEEEe
Confidence 46766 778885 67899999999999776543
No 321
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=24.80 E-value=31 Score=23.92 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=25.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++++|-+.+..
T Consensus 234 ~~D~v-id~~g~~-~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 234 ELDFI-ISTIPTH-YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp CEEEE-EECCCSC-CCHHHHHTTEEEEEEEEECC
T ss_pred CCCEE-EECCCcH-HHHHHHHHHHhcCCEEEEEC
Confidence 46776 7888975 36788999999999887754
No 322
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=24.72 E-value=36 Score=20.73 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=25.6
Q ss_pred CCCCceeee-CCC----CCchhhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDL-DPF----GNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDl-DPf----GSp~pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=. ..+ -.+..+|..+.+.+|.||.+.+.
T Consensus 61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~ 100 (176)
T 2ld4_A 61 ESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK 100 (176)
T ss_dssp SSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence 346887754 221 23578899999999999999994
No 323
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=24.72 E-value=1.2e+02 Score=20.08 Aligned_cols=32 Identities=16% Similarity=0.109 Sum_probs=24.8
Q ss_pred CceeeeC-CCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 11 FDAIDLD-PFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 11 fD~IDlD-PfGSp~pfldsA~~av~~gGll~vT 42 (75)
||.+-.| .|-+...+|..+.+.+|.||.+.+.
T Consensus 104 ~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 104 PSFTSIDVSFISLDLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred CCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence 4544444 4666688999999999999999885
No 324
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=24.70 E-value=4.8 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=36.7
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|.+.....|+=.+|=.|.+--.|-.+..-|+.|++
T Consensus 16 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 55 (197)
T 2hyt_A 16 TLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGD 55 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4689999999999999999999999999999999988875
No 325
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=24.63 E-value=37 Score=21.53 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=17.5
Q ss_pred hHHHHHHhcccCcEEEEEec
Q psy4127 25 FLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 25 fldsA~~av~~gGll~vTaT 44 (75)
+|..+.+.+++||.+.++-.
T Consensus 130 ~l~~~~~~LkpgG~l~~~~~ 149 (234)
T 3dtn_A 130 LYKRSYSILKESGIFINADL 149 (234)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEEe
Confidence 88888999999999998753
No 326
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=24.40 E-value=7.6 Score=24.48 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=36.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--.|-.+..-|+.|++
T Consensus 26 ~Il~AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~s 65 (207)
T 3bjb_A 26 RMLEAAIELATEKELARVQMHEVAKRAGVAIGTLYRYFPS 65 (207)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 4689999999999999999999999999999998888875
No 327
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.36 E-value=5 Score=25.83 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=37.1
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 19 ~~il~aA~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~~ 59 (216)
T 2oi8_A 19 AEIKDHAWEQIATAGASALSLNAIAKRMGMSGPALYRYFDG 59 (216)
T ss_dssp HHHHHHHHHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 45799999999999999999999999999999998887775
No 328
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=24.23 E-value=7.8 Score=26.02 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=36.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 45 ~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~hF~s 84 (273)
T 3c07_A 45 LILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAG 84 (273)
T ss_dssp HHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHHHcCC
Confidence 4689999999999999999999999999999999988875
No 329
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=24.21 E-value=5.2 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=36.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 47 ~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~s 86 (229)
T 3bni_A 47 RILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGN 86 (229)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcCC
Confidence 4799999999999999999999999999999998888875
No 330
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.18 E-value=5.6 Score=24.91 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=37.1
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+=.+|=.|.+--.|-....-|+.|++
T Consensus 12 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~s 52 (203)
T 2np5_A 12 ERLAAALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFST 52 (203)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcCC
Confidence 45699999999999999999999999999999888888775
No 331
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=24.17 E-value=30 Score=23.05 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=17.7
Q ss_pred chhhHHHHHHhcccCcEEEEEe
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTa 43 (75)
+..+|..+.+.+|.||.|.++.
T Consensus 194 ~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 194 FQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEEE
Confidence 4566777789999999999973
No 332
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Probab=24.12 E-value=39 Score=23.54 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=24.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ .+..++++++.+|-+.+-.
T Consensus 231 ~~d~v-i~~~G~~--~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 231 GVNLI-LDCIGGS--YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp CEEEE-EESSCGG--GHHHHHHHEEEEEEEEECC
T ss_pred CceEE-EECCCch--HHHHHHHhccCCCEEEEEe
Confidence 46776 7888864 6888999999999887654
No 333
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=23.81 E-value=5.1 Score=25.44 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=37.0
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--.|-.+..-|+.|+.
T Consensus 38 ~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~F~s 78 (221)
T 3g7r_A 38 ARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSG 78 (221)
T ss_dssp HHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 45789999999999999999999999999998888888775
No 334
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=23.79 E-value=7 Score=24.48 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=37.0
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|.+.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 14 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2wui_A 14 DGILDAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYKN 54 (210)
T ss_dssp HHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcCC
Confidence 35799999999999999999999999999999888888775
No 335
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=23.67 E-value=57 Score=24.54 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCCceeeeCCCC-CchhhHHHHHHhcc------cCcEEEEEec
Q psy4127 9 RHFDAIDLDPFG-NPTRFLDAAVSSLR------DGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfG-Sp~pfldsA~~av~------~gGll~vTaT 44 (75)
.-+++++++-.| .|+|.+.-|++..+ .+| +.|||+
T Consensus 89 ~Gi~V~~~~~~G~~pTP~l~~av~~~~~~~~~a~~G-ImITAS 130 (524)
T 2z0f_A 89 HGIEVRVEADGDYTPTPLVSLAILEHNAHHEAKADG-VLLTPS 130 (524)
T ss_dssp TTCCEEEESSSSCCCHHHHHHHHHHHHTTCSSCCEE-EEECC-
T ss_pred CCCEEEEeCCCCccCcHHHHHHHHHhCCCccccceE-EEEcCC
Confidence 358999987544 48999999999887 555 678886
No 336
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.64 E-value=6.1 Score=24.98 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=37.0
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+=.+|=.|.+--.|-.+..-|+.|++
T Consensus 12 ~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~s 52 (209)
T 2gfn_A 12 RALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGS 52 (209)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCcchHHhcCCC
Confidence 35799999999999999999999999999998888888775
No 337
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=23.58 E-value=40 Score=24.63 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=17.4
Q ss_pred eCC-CCCchhhHHHHHHhcccCcEEE
Q psy4127 16 LDP-FGNPTRFLDAAVSSLRDGGLLL 40 (75)
Q Consensus 16 lDP-fGSp~pfldsA~~av~~gGll~ 40 (75)
||| ||+...|-+ -+++++..|+=-
T Consensus 73 idp~~Gt~~df~~-lv~~aH~~Gi~V 97 (480)
T 1ud2_A 73 VRTKYGTKAQLER-AIGSLKSNDINV 97 (480)
T ss_dssp SSCSSCCHHHHHH-HHHHHHHTTCEE
T ss_pred cCCCCCCHHHHHH-HHHHHHHCCCEE
Confidence 777 999877664 777777777543
No 338
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=23.55 E-value=6.2 Score=24.69 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=36.7
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--.|-.+..-|+.|++
T Consensus 16 ~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~s 55 (211)
T 3bhq_A 16 EIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTD 55 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4689999999999999999999999999999999988875
No 339
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Probab=23.54 E-value=78 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccC-cEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDG-GLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~g-Gll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++++ |-+.+..
T Consensus 261 g~D~v-id~~g~~-~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 261 GVDFS-FEVIGRL-DTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp CBSEE-EECSCCH-HHHHHHHHHBCTTTCEEEECS
T ss_pred CCcEE-EECCCCH-HHHHHHHHHhhcCCcEEEEec
Confidence 57777 7888864 5678899999999 9776643
No 340
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=23.31 E-value=36 Score=21.98 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=24.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
.||+|=++. ....+.+.+.+.++.||.|.++.-+
T Consensus 158 ~fD~Ii~~~--~~~~~~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 158 PYDVIIVTA--GAPKIPEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CEEEEEECS--BBSSCCHHHHHTEEEEEEEEEEECS
T ss_pred CccEEEECC--cHHHHHHHHHHhcCCCcEEEEEEec
Confidence 488886653 2234557888999999999988654
No 341
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1
Probab=23.30 E-value=79 Score=22.01 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccC-cEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDG-GLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~g-Gll~vTa 43 (75)
.+|+| +|.-|.+ ..++.++++++++ |-+.+..
T Consensus 262 g~D~v-id~~g~~-~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 262 GVDFS-LECVGNV-GVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp CBSEE-EECSCCH-HHHHHHHHTBCTTTCEEEECS
T ss_pred CCCEE-EECCCCH-HHHHHHHHHhhcCCcEEEEEc
Confidence 47776 7888864 5678999999999 8776543
No 342
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=23.27 E-value=4.1 Score=25.56 Aligned_cols=40 Identities=20% Similarity=0.299 Sum_probs=36.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|.+.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~yF~s 57 (199)
T 3crj_A 18 EIMQATYRALREHGYADLTIQRIADEYGKSTAAVHYYYDT 57 (199)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChhHHhhhcCC
Confidence 4699999999999999999999999999998888887765
No 343
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=23.23 E-value=33 Score=23.32 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=20.0
Q ss_pred chhhHHHHHHhcccCcEEEEEecC
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTaTD 45 (75)
+..++..+.+.+|.||.|++..-.
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCEEEEEECC
Confidence 567899999999999999886543
No 344
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=23.23 E-value=43 Score=23.38 Aligned_cols=32 Identities=25% Similarity=0.327 Sum_probs=25.3
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|.+ ..++.++++++.+|-+.+..
T Consensus 258 g~D~v-id~~g~~-~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 258 GVNFA-LESTGSP-EILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp CEEEE-EECSCCH-HHHHHHHHTEEEEEEEEECC
T ss_pred CCcEE-EECCCCH-HHHHHHHHHHhcCCEEEEeC
Confidence 47776 7888864 56788999999999887654
No 345
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=23.21 E-value=6 Score=25.00 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=36.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 9 ~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 48 (228)
T 3nnr_A 9 KILLSSLELFNDKGERNITTNHIAAHLAISPGNLYYHFRN 48 (228)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhChhhcCHHHHHHHhCCCCccchhcCCC
Confidence 4689999999999999999999999999999999988875
No 346
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=23.16 E-value=1.1e+02 Score=22.10 Aligned_cols=34 Identities=24% Similarity=0.474 Sum_probs=24.2
Q ss_pred CCCceeeeCCC-CCchhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPF-GNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPf-GSp~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=+||= -.....++ ++...+.+++++|++
T Consensus 355 ~~fD~Vv~dPPr~g~~~~~~-~l~~~~p~~ivyvsc 389 (433)
T 1uwv_A 355 NGFDKVLLDPARAGAAGVMQ-QIIKLEPIRIVYVSC 389 (433)
T ss_dssp TCCSEEEECCCTTCCHHHHH-HHHHHCCSEEEEEES
T ss_pred CCCCEEEECCCCccHHHHHH-HHHhcCCCeEEEEEC
Confidence 46999999973 22345454 566678899999986
No 347
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=22.92 E-value=27 Score=22.42 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=25.0
Q ss_pred CCCCceeeeCCCCCchhhHHHHHHhcccCcEEE
Q psy4127 8 GRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLL 40 (75)
Q Consensus 8 ~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~ 40 (75)
.+.||+|=..+ .+..+|..+.+.+|+||.|.
T Consensus 109 ~~~fD~v~~~~--~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 109 GAPFGLIVSRR--GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CCCEEEEEEES--CCSGGGGGHHHHEEEEEEEE
T ss_pred CCCEEEEEeCC--CHHHHHHHHHHHcCCCcEEE
Confidence 35688886552 47789999999999999998
No 348
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=22.91 E-value=41 Score=22.13 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=16.6
Q ss_pred hhhHHHHHHhcccCcEEEEE
Q psy4127 23 TRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vT 42 (75)
..+|...-+.+|.||.+.+.
T Consensus 119 ~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 119 RDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 35678888999999999993
No 349
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=22.81 E-value=41 Score=20.78 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCCceeeeCCC----CC--ch---------hhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLDPF----GN--PT---------RFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlDPf----GS--p~---------pfldsA~~av~~gGll~vTa 43 (75)
+.||+|=.|.- |. .. ..|..+.+.+++||.+.++.
T Consensus 105 ~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 105 KKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 47999987742 21 01 15667889999999998853
No 350
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=22.80 E-value=5.5 Score=24.61 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=36.8
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+=.+|=.|.+--.|-.+..-|+.|++
T Consensus 15 ~~Il~aA~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~s 55 (192)
T 2fq4_A 15 KAILSASYELLLESGFKAVTVDKIAERAKVSKATIYKWWPN 55 (192)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCCC
Confidence 34789999999999999999999999999998888888775
No 351
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=22.72 E-value=30 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=14.4
Q ss_pred CCceeeeCCCCCchhhHH
Q psy4127 10 HFDAIDLDPFGNPTRFLD 27 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfld 27 (75)
+.=+||+||.|+.+.++.
T Consensus 30 ~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 30 ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp CEEEEEECTTCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHhc
Confidence 677899999997776664
No 352
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.69 E-value=6.1 Score=24.86 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=36.4
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 12 ~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~s 51 (206)
T 1vi0_A 12 QIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKN 51 (206)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 4689999999999999999999999999999888888765
No 353
>3q31_A Carbonic anhydrase; glysosy secreted, dimeric, lyase; HET: NAG; 2.70A {Aspergillus oryzae}
Probab=22.68 E-value=17 Score=25.33 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=34.7
Q ss_pred eeeeCCCCCchhhHHHHHHhcc---cCc-EEEEEecCcccccCCChhHHHHHhcCcccCCCCccC
Q psy4127 13 AIDLDPFGNPTRFLDAAVSSLR---DGG-LLLVTCTDMAVLCGNTPETCYVKYNAVSLKTAACHE 73 (75)
Q Consensus 13 ~IDlDPfGSp~pfldsA~~av~---~gG-ll~vTaTD~a~L~G~~~~~~~r~Yg~~~~~~~~~~E 73 (75)
++.+.+.|.+.|+|+.-+..+. ..| -..+..-|...|...-...-|.+|-+ .+.+|-|.|
T Consensus 132 ~~~~~~~g~~n~~l~~i~~~l~~i~~~g~~~~~~~~~~~~Ll~~~~~~~yy~Y~G-SLTTPPC~E 195 (244)
T 3q31_A 132 FFQLSEVGDSVPLFDSVFAPIDNIPDAGTSTTTGQLDFGGLLDHFNRHGVYQYTG-SLTTPPCTE 195 (244)
T ss_dssp EEEECTTCCCCHHHHHHHGGGGGCCSTTCEEECCCBCCHHHHHHHHHSCEEEEEE-ECSSTTCCE
T ss_pred EEecCCCCCCCHHHHHHHHHHHhhcCCCCceecCCcCHHHHhcccccCCEEEEcc-cCcCCCccc
Confidence 4677788888999998776654 233 22222233333332111234666766 678888877
No 354
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=22.66 E-value=6.8 Score=25.02 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=37.1
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|=.|.+--.|-.+..-|+.|++
T Consensus 17 ~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~s 57 (208)
T 3v6g_A 17 QAIVEAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFND 57 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHHcCC
Confidence 35799999999999999999999999999999888888775
No 355
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*
Probab=22.61 E-value=54 Score=22.59 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|.+ ..++.++++++++|-+.+..
T Consensus 231 g~D~v-id~~g~~-~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 231 GVEVL-LEFSGNE-AAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp CEEEE-EECSCCH-HHHHHHHHHEEEEEEEEECC
T ss_pred CCCEE-EECCCCH-HHHHHHHHHHhcCCEEEEEe
Confidence 47776 7888864 56788999999999877654
No 356
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=22.58 E-value=33 Score=23.53 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=25.0
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|+ +.++.++++++++|-+.+-.
T Consensus 218 ~~d~v-i~~~g~--~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 218 GIDVF-FDNVGG--EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp CEEEE-EESSCH--HHHHHHHTTEEEEEEEEECC
T ss_pred CceEE-EECCCc--chHHHHHHHHhhCCEEEEEe
Confidence 47776 788884 67999999999999887653
No 357
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.48 E-value=5.1 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=36.2
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--.|-.+..-|+.|+.
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~AGvskgtlY~hF~s 46 (208)
T 2g3b_A 7 AILKASATAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFKD 46 (208)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCCC
Confidence 3589999999999999999999999999999999988875
No 358
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=22.36 E-value=49 Score=23.05 Aligned_cols=31 Identities=29% Similarity=0.526 Sum_probs=24.4
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|+ +.++.++++++++|-+.+..
T Consensus 235 g~Dvv-id~~g~--~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 235 GVDII-LDMIGA--AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp CEEEE-EESCCG--GGHHHHHHTEEEEEEEEECC
T ss_pred CceEE-EECCCH--HHHHHHHHHhccCCEEEEEE
Confidence 46766 788885 57899999999999877654
No 359
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Probab=22.22 E-value=86 Score=21.82 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=24.6
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccC-cEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDG-GLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~g-Gll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++.+ |-+.+..
T Consensus 261 g~Dvv-id~~g~~-~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 261 GVDYA-VECAGRI-ETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp CBSEE-EECSCCH-HHHHHHHHTBCTTTCEEEECC
T ss_pred CCCEE-EECCCCH-HHHHHHHHHHhcCCCEEEEEc
Confidence 57776 7888864 5678899999999 9776544
No 360
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=22.21 E-value=6.7 Score=24.02 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=36.2
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+.+-|+.|+.
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~s 46 (190)
T 3vpr_A 7 RILEEAAKLFTEKGYEATSVQDLAQALGLSKAALYHHFGS 46 (190)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCC
Confidence 4589999999999999999999999999999998888875
No 361
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=22.17 E-value=3.2 Score=25.37 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=36.0
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 15 ~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 54 (204)
T 3eup_A 15 FIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFEN 54 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHHhCCC
Confidence 4689999999999999999999999999998888887765
No 362
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=22.02 E-value=5.9 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=36.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~s 53 (194)
T 2nx4_A 14 SITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAG 53 (194)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhCcC
Confidence 4689999999999999999999999999999888888765
No 363
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=21.92 E-value=42 Score=21.53 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=24.6
Q ss_pred CCCceeeeC----CCCC---chhhHHHHHHhcccCcEEEEEe
Q psy4127 9 RHFDAIDLD----PFGN---PTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 9 ~~fD~IDlD----PfGS---p~pfldsA~~av~~gGll~vTa 43 (75)
+.||+|-.. ++-+ +..+|..+.+.+++||++.++-
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 468888532 2222 3467888889999999998864
No 364
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=21.87 E-value=5.8 Score=24.61 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=36.0
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+.+-|+.|++
T Consensus 13 ~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~s 52 (204)
T 3anp_C 13 RIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPY 52 (204)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHHcCC
Confidence 4689999999999999999999999999998888887765
No 365
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.86 E-value=7.1 Score=24.41 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=36.5
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...| -.+|-.|.+--+|-.+..-|+.|+.
T Consensus 23 ~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~s 62 (215)
T 2hku_A 23 DALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGS 62 (215)
T ss_dssp HHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCC
Confidence 457999999999999 9999999999999999999988875
No 366
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=21.77 E-value=52 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEec
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaT 44 (75)
+.||+|=.++--. .+.+.+.+.+|.||.+.++..
T Consensus 143 ~~fD~Iv~~~~~~--~~~~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 143 SPYDVIFVTVGVD--EVPETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CCEEEEEECSBBS--CCCHHHHHHEEEEEEEEEEBC
T ss_pred CCeEEEEEcCCHH--HHHHHHHHhcCCCcEEEEEEC
Confidence 4689887775322 222677899999999999853
No 367
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=21.63 E-value=64 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=23.2
Q ss_pred hHHHHHHhccc-Cc-EEEEEecCcccccCCC
Q psy4127 25 FLDAAVSSLRD-GG-LLLVTCTDMAVLCGNT 53 (75)
Q Consensus 25 fldsA~~av~~-gG-ll~vTaTD~a~L~G~~ 53 (75)
=++-|++++++ |+ .|+|..-|+-+|..-.
T Consensus 18 QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~ 48 (243)
T 1ryp_A 18 QVEYAFKATNQTNINSLAVRGKDCTVVISQK 48 (243)
T ss_dssp HHHHHHHHTTTTCCCEEEEECSSEEEEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEeCCEEEEEEEe
Confidence 46779999999 65 7999988888877644
No 368
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=21.57 E-value=45 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.2
Q ss_pred hhhHHHHHHhcccCcEEEEEecCccc
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAV 48 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~ 48 (75)
..+|..+.+.++.||.|.++.-....
T Consensus 170 ~~~l~~~~~~L~pgG~l~~~~~~~~~ 195 (299)
T 3g2m_A 170 RGLYASVREHLEPGGKFLLSLAMSEA 195 (299)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCcEEEEEeecCcc
Confidence 57888888999999999998655443
No 369
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=21.55 E-value=6.5 Score=23.92 Aligned_cols=40 Identities=10% Similarity=0.228 Sum_probs=36.0
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 6 ~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~s 45 (179)
T 2eh3_A 6 RILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKS 45 (179)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCcHHHHHHcCC
Confidence 4589999999999999999999999999998888887765
No 370
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=21.53 E-value=41 Score=22.50 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCCceeeeC----CCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLD----PFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlD----PfGSp~pfldsA~~av~~gGll~vT 42 (75)
+.||+|=.. -+ .+..++..+.+.++.||.|.+.
T Consensus 112 ~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 112 QKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp SCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEE
Confidence 467777532 22 5678999999999999999883
No 371
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=21.49 E-value=25 Score=23.94 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=19.2
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEE
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vT 42 (75)
+.+|+| +|.-|++. +..++++++++|-+.+.
T Consensus 198 ~g~Dvv-~d~~g~~~--~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 198 QKYFAI-FDAVNSQN--AAALVPSLKANGHIICI 228 (315)
T ss_dssp SCEEEE-ECC---------TTGGGEEEEEEEEEE
T ss_pred CCccEE-EECCCchh--HHHHHHHhcCCCEEEEE
Confidence 357766 78889754 37899999999987665
No 372
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=21.48 E-value=5 Score=24.61 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=36.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 22 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 61 (212)
T 3loc_A 22 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPS 61 (212)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhhCCC
Confidence 3689999999999999999999999999998888888875
No 373
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=21.45 E-value=4.1 Score=26.06 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=36.8
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 33 ~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~s 73 (230)
T 2iai_A 33 ETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTG 73 (230)
T ss_dssp SCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSS
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHHhCCC
Confidence 45799999999999999999999999999998888887765
No 374
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=21.43 E-value=6 Score=24.65 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=36.1
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~s 53 (210)
T 3vib_A 14 HLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKN 53 (210)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCCC
Confidence 4689999999999999999999999999998888887775
No 375
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*
Probab=21.42 E-value=34 Score=23.49 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|. +.++.++++++.+|-+.+..
T Consensus 225 ~~d~v-i~~~g~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 225 GIDIY-FENVGG--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp CEEEE-EESSCH--HHHHHHHTTEEEEEEEEECC
T ss_pred CCcEE-EECCCH--HHHHHHHHHHhcCCEEEEEc
Confidence 46666 777785 57899999999999887643
No 376
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=21.29 E-value=7.4 Score=25.21 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=37.1
Q ss_pred hhhHHHHHHhcccC-cEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDG-GLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~g-Gll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+... |+=.+|-.|.+--.|-.+...|+.|+.
T Consensus 8 ~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~s 49 (220)
T 1z0x_A 8 DTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKN 49 (220)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSS
T ss_pred HHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHHhcCC
Confidence 45789999999999 999999999999999999998888775
No 377
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=21.24 E-value=2.2e+02 Score=20.68 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=41.1
Q ss_pred CCCCcee--eeCCCCCchhhHHHH-----H----HhcccCcEEEEEecCcccccCCChhH------HHHHhcCcccCCCC
Q psy4127 8 GRHFDAI--DLDPFGNPTRFLDAA-----V----SSLRDGGLLLVTCTDMAVLCGNTPET------CYVKYNAVSLKTAA 70 (75)
Q Consensus 8 ~~~fD~I--DlDPfGSp~pfldsA-----~----~av~~gGll~vTaTD~a~L~G~~~~~------~~r~Yg~~~~~~~~ 70 (75)
++++|.| ||=| -||+|.+|++ | +-+++ |=.|+ -+|||-.|+. +.++||..-.+.|+
T Consensus 142 ~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~-----KVl~py~p~v~e~l~~lq~~fgg~lVR~P~ 214 (267)
T 3p8z_A 142 PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-----KVLNPYMPTVIEHLERLQRKHGGMLVRNPL 214 (267)
T ss_dssp CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-----EESCCCSHHHHHHHHHHHHHHCCEEECCTT
T ss_pred CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE-----EEccCCChhHHHHHHHHHHHhCCEeEeCCC
Confidence 3568876 8889 8999999973 2 23455 55555 6899988655 57889998777666
Q ss_pred c
Q psy4127 71 C 71 (75)
Q Consensus 71 ~ 71 (75)
+
T Consensus 215 S 215 (267)
T 3p8z_A 215 S 215 (267)
T ss_dssp S
T ss_pred C
Confidence 5
No 378
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}
Probab=21.18 E-value=55 Score=22.57 Aligned_cols=32 Identities=13% Similarity=0.093 Sum_probs=25.1
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|++ ..++.++++++++|-+.+..
T Consensus 238 g~D~v-id~~g~~-~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 238 GASIA-IDLVGTE-ETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp CEEEE-EESSCCH-HHHHHHHHHEEEEEEEEECC
T ss_pred CccEE-EECCCCh-HHHHHHHHHhhcCCEEEEeC
Confidence 57877 8888864 36788999999999876643
No 379
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=21.18 E-value=6.3 Score=24.57 Aligned_cols=40 Identities=28% Similarity=0.413 Sum_probs=36.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|.+.....|+=.+|=.|.+--.|-.+..-|+.|+.
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~s 54 (210)
T 2xdn_A 15 QIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNN 54 (210)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSS
T ss_pred HHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhCC
Confidence 4689999999999999999999999999998888888775
No 380
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*
Probab=21.14 E-value=31 Score=23.66 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=23.9
Q ss_pred CCceeeeCCCCCchhhHHHHHHhcccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTa 43 (75)
.+|+| +|.-|. +.++.++++++++|-+.+-.
T Consensus 214 ~~d~v-i~~~g~--~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 214 GYDCY-FDNVGG--EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp CEEEE-EESSCH--HHHHHHHTTEEEEEEEEECC
T ss_pred CCeEE-EECCCh--HHHHHHHHHHhcCCEEEEEe
Confidence 46766 788885 45899999999999876543
No 381
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.07 E-value=4.9 Score=24.94 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=36.6
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.....|+=.+|=.|.+--+|-.+..-|+.|++
T Consensus 17 ~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~s 57 (203)
T 3ccy_A 17 DTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDS 57 (203)
T ss_dssp HHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSC
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCC
Confidence 46799999999999999999999999999998888877764
No 382
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=21.00 E-value=38 Score=22.90 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=19.6
Q ss_pred hhhHHHHHHhcccCcEEEEEecCc
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDM 46 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~ 46 (75)
..+|..+.+.+++||++.++.-+.
T Consensus 135 ~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 135 DMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHhCCCcEEEEecCCh
Confidence 477888889999999999986554
No 383
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=20.95 E-value=39 Score=24.42 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=17.8
Q ss_pred hhhHHHHHHhcccCcEEEEEe
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTC 43 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTa 43 (75)
..+|++|++.++.||-|+|=+
T Consensus 213 ~~~L~~a~~~L~~gGrl~vis 233 (285)
T 1wg8_A 213 KEFLEQAAEVLAPGGRLVVIA 233 (285)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEe
Confidence 468999999999999998743
No 384
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=20.91 E-value=7 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=37.1
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
...|++|++.....|+=.+|-.|.+--.|-.+..-|+.|+.
T Consensus 26 ~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~s 66 (231)
T 2zcx_A 26 EAILDAARELGTERGIREITLTDIAATVGMHKSALLRYFET 66 (231)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCCC
Confidence 35799999999999999999999999999999888888775
No 385
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.73 E-value=4.1 Score=24.87 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=35.6
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|.+.+...|+=.+|=.|.+--+|-.+..-|+.|+.
T Consensus 7 ~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~s 46 (189)
T 3geu_A 7 KIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDS 46 (189)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTTCCHHHHTTTCSS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHhCC
Confidence 4689999999999999999999999999998888887765
No 386
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=20.62 E-value=43 Score=21.22 Aligned_cols=35 Identities=14% Similarity=0.341 Sum_probs=24.6
Q ss_pred CCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecC
Q psy4127 9 RHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTD 45 (75)
Q Consensus 9 ~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD 45 (75)
+.||+|=.+.- ...+.+.+.+.++.||.+.++..+
T Consensus 133 ~~fD~v~~~~~--~~~~~~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 133 KPYDRVVVWAT--APTLLCKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CCEEEEEESSB--BSSCCHHHHHTEEEEEEEEEEECS
T ss_pred CCccEEEECCc--HHHHHHHHHHHcCCCcEEEEEEcC
Confidence 46888866532 123446788999999999988643
No 387
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Probab=20.61 E-value=91 Score=21.84 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=24.0
Q ss_pred CCceeeeCCCCCchhhHHHHHHhc-ccCcEEEEEe
Q psy4127 10 HFDAIDLDPFGNPTRFLDAAVSSL-RDGGLLLVTC 43 (75)
Q Consensus 10 ~fD~IDlDPfGSp~pfldsA~~av-~~gGll~vTa 43 (75)
++|+| +|.-|++ ..++.+++++ +.+|-+.+-.
T Consensus 231 ~~d~v-~d~~g~~-~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 231 NLRYA-LDCITNV-ESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp CCCEE-EESSCSH-HHHHHHHHHSCTTCEEEEESS
T ss_pred CccEE-EECCCch-HHHHHHHHHhhcCCCEEEEEe
Confidence 47776 7888965 5578899999 5888776543
No 388
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=20.53 E-value=68 Score=21.74 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.5
Q ss_pred chhhHHHHHHhcccCcEEEEEec
Q psy4127 22 PTRFLDAAVSSLRDGGLLLVTCT 44 (75)
Q Consensus 22 p~pfldsA~~av~~gGll~vTaT 44 (75)
+...|....++++.||.|.++-.
T Consensus 175 ~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 175 VDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCcEEEEEEe
Confidence 56788888899999999998754
No 389
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=20.47 E-value=44 Score=20.90 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.5
Q ss_pred CCCCchhhHHHHHHhcccCcEEE
Q psy4127 18 PFGNPTRFLDAAVSSLRDGGLLL 40 (75)
Q Consensus 18 PfGSp~pfldsA~~av~~gGll~ 40 (75)
-+|.|.+||...++.+++.|+|.
T Consensus 37 ~~~i~~~~l~kil~~L~~aGlv~ 59 (143)
T 3t8r_A 37 ENNLSDLYLEQLVGPLRNAGLIR 59 (143)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHCcCHHHHHHHHHHHHHCCEEE
Confidence 37889999999999999999954
No 390
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=20.38 E-value=55 Score=25.07 Aligned_cols=38 Identities=11% Similarity=0.049 Sum_probs=27.8
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHh
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKY 61 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Y 61 (75)
.||.-+++.++.||.+++=-.++....+.....-+|++
T Consensus 376 ~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~ 413 (544)
T 3khk_A 376 AWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKT 413 (544)
T ss_dssp HHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHH
T ss_pred HHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHH
Confidence 59999999999999998877666544332455566665
No 391
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=20.37 E-value=5.6 Score=25.83 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=37.3
Q ss_pred hhhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 23 TRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 23 ~pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..-|++|++.+...|+=.+|-.|.+--.|-.+..-|+.|+.
T Consensus 28 ~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~ 68 (211)
T 3fiw_A 28 ETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFRT 68 (211)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCSS
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCC
Confidence 56799999999999999999999999999999998888775
No 392
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.35 E-value=7.2 Score=24.26 Aligned_cols=40 Identities=18% Similarity=0.265 Sum_probs=36.4
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
.-|++|++.....|+=.+|=.|.+--.|-.+.+-|+.|++
T Consensus 11 ~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~s 50 (197)
T 2gen_A 11 EILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGN 50 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCCC
Confidence 5689999999999999999999999999999988888875
No 393
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=20.25 E-value=75 Score=22.27 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=25.3
Q ss_pred CCCCceeeeCCCC-------CchhhHHHHHHhcccCcEEEEE
Q psy4127 8 GRHFDAIDLDPFG-------NPTRFLDAAVSSLRDGGLLLVT 42 (75)
Q Consensus 8 ~~~fD~IDlDPfG-------Sp~pfldsA~~av~~gGll~vT 42 (75)
.+.||+|=.++.| .+..++..+-+.+|.||++...
T Consensus 131 ~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 131 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred CCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 3679999887743 3344666667899999998643
No 394
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.24 E-value=3 Score=25.55 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=35.3
Q ss_pred hhHHHHHHhcccCcEEEEEecCcccccCCChhHHHHHhcC
Q psy4127 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNA 63 (75)
Q Consensus 24 pfldsA~~av~~gGll~vTaTD~a~L~G~~~~~~~r~Yg~ 63 (75)
..|++|++.+...|+=.+|-.|.+--+|-.+..-|+.|+.
T Consensus 20 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~s 59 (211)
T 3him_A 20 RIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKT 59 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSS
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCC
Confidence 5789999999999999999999999999988887777664
No 395
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=20.06 E-value=22 Score=23.65 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=32.1
Q ss_pred cCCCCceeeeCCCCCchhhHHHHHHhcccCcEEEEEecCccccc-C----CChhHHHHHhcCcc
Q psy4127 7 RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLC-G----NTPETCYVKYNAVS 65 (75)
Q Consensus 7 ~~~~fD~IDlDPfGSp~pfldsA~~av~~gGll~vTaTD~a~L~-G----~~~~~~~r~Yg~~~ 65 (75)
++++|.|+=+|+=|.- .--|+|.||.+++-... + .-|-.++|+||...
T Consensus 17 ~~~~F~V~v~~~~~~e-----------~G~~~L~Lt~~~L~L~~~~~~~~~WPy~~LRRYG~d~ 69 (146)
T 2kup_A 17 HPTKFKVTNVDDEGVE-----------LGSGVMELTQSELVLHLHRREAVRWPYLCLRRYGYDS 69 (146)
T ss_dssp CSSEEEEEEECTTCCE-----------EEEEEEEECSSCEEEECSSSCCEEECGGGCSCEEEET
T ss_pred CCCEEEEEEeCCCCCc-----------ceeEEEEEccCEEEEEcCCCCeeEcCHHHhhhcCccC
Confidence 4578999999975521 13478888888875442 1 12677999999653
Done!