RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4127
(75 letters)
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 84.7 bits (209), Expect = 5e-22
Identities = 36/69 (52%), Positives = 43/69 (62%)
Query: 7 RGRHFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCYVKYNAVSL 66
R R+F IDLDPFG+P FLD A+ S + G+L VT TD A LCG P C KY AV L
Sbjct: 126 RHRYFHFIDLDPFGSPMEFLDTALRSAKRRGILGVTATDGAPLCGAHPRACLRKYLAVPL 185
Query: 67 KTAACHEMP 75
+ CHE+
Sbjct: 186 RGELCHEVG 194
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 29.0 bits (64), Expect = 0.034
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 10 HFDAIDLDPFGNPTRFLDAAVSSLRDGGLLLVTC 43
D I + F+ A+S +DG ++
Sbjct: 174 IADRILMGYVVRTHEFIPKALSIAKDGAIIHYHN 207
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator
PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 76
Score = 24.4 bits (53), Expect = 0.82
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
R L AA +L + G + + ++ G T Y
Sbjct: 11 RILGAATQALLERGAVEPSVGEVMGAAGLTVGGFY 45
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 25.0 bits (54), Expect = 0.89
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 12/69 (17%)
Query: 5 KIRGRHFDAIDLD----------PFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTP 54
R R + ++L N FL ++ G L C D+
Sbjct: 178 SKRARPGETVNLPFVMVLRNVYIMLINTIIFLKT--NNWHAGWNTLSFCNDVFKQKLQKS 235
Query: 55 ETCYVKYNA 63
E ++
Sbjct: 236 ECIKLREVP 244
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA
homologue) {Thermus thermophilus [TaxId: 274]}
Length = 95
Score = 23.6 bits (51), Expect = 1.9
Identities = 4/12 (33%), Positives = 8/12 (66%)
Query: 1 MQLEKIRGRHFD 12
M + K+ GR+ +
Sbjct: 1 MNIYKLIGRNLE 12
>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase
HisC {Thermotoga maritima [TaxId: 2336]}
Length = 334
Score = 24.0 bits (50), Expect = 2.1
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 4/31 (12%)
Query: 12 DAIDLD----PFGNPTRFLDAAVSSLRDGGL 38
D L PF P +D L L
Sbjct: 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDAL 50
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator
YfiR {Bacillus subtilis [TaxId: 1423]}
Length = 81
Score = 23.2 bits (50), Expect = 2.2
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
L+AA + + G L T D+ G + Y
Sbjct: 15 EILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVY 49
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator
SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Length = 75
Score = 23.2 bits (50), Expect = 2.4
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
R L A + GL +T +A + +
Sbjct: 9 RILGRAAEIASEEGLDGITIGRLAEELEMSKSGVH 43
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 74
Score = 23.3 bits (50), Expect = 2.5
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
L A+ + + L ++ +A G +
Sbjct: 8 MILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLI 42
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313
{Streptomyces coelicolor [TaxId: 1902]}
Length = 79
Score = 23.3 bits (50), Expect = 2.6
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
D A + G ++ +A G + Y
Sbjct: 13 EIKDHAWEQIATAGASALSLNAIAKRMGMSGPALY 47
>d1g57a_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Escherichia coli [TaxId:
562]}
Length = 209
Score = 23.4 bits (50), Expect = 2.9
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 16 LDPFGNPTRFLDAAVSSLRDGGLLLVT 42
L FG P ++ A+++LR+G ++V
Sbjct: 2 LSSFGTPFERVENALAALREGRGVMVL 28
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator
Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Length = 74
Score = 22.8 bits (49), Expect = 3.0
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
L A + + GG + D++ + G + +
Sbjct: 8 DILQCARTLIIRGGYNSFSYADISQVVGIRNASIH 42
>d1zk8a1 a.4.1.9 (A:6-77) Transcriptional regulator BC5000
{Bacillus cereus [TaxId: 1396]}
Length = 72
Score = 22.9 bits (49), Expect = 3.1
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
+ ++ A G+ VT +A G + Y
Sbjct: 7 KIVETAAEIADANGVQEVTLASLAQTLGVRSPSLY 41
>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia
coli [TaxId: 562]}
Length = 206
Score = 23.7 bits (50), Expect = 3.1
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 14 IDLDPFGNPTRFLDAAVSSLRDGGLLLV 41
+ P R ++ AV +R GG+++
Sbjct: 5 FYIHPDNPQQRLINQAVEIVRKGGVIVY 32
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 22.9 bits (48), Expect = 5.8
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 14 IDLDPFGNPTRFL 26
+ DP + TR +
Sbjct: 36 VGCDPKADSTRLI 48
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 78
Score = 22.1 bits (47), Expect = 6.0
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
+ + R +T ++A G T Y
Sbjct: 11 HIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLY 45
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator
RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 77
Score = 22.0 bits (47), Expect = 6.6
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 24 RFLDAAVSSLRDGGLLLVTCTDMAVLCGNTPETCY 58
DA ++ + G+ VT +A G +
Sbjct: 10 ALADAVLALIAREGISAVTTRAVAEESGWSTGVLN 44
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus,
subsp. Thermophilus [TaxId: 271]}
Length = 387
Score = 22.7 bits (48), Expect = 6.7
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 10 HFDAIDLDPFGNPTR-FLDAA 29
+ DPFG+ R LD
Sbjct: 16 TVGNVGRDPFGDAVRERLDPV 36
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 22.2 bits (46), Expect = 8.2
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 7 RGRHFDAIDLDPFGNPTRFL 26
G+ + DP + TR L
Sbjct: 28 MGKTIMVVGCDPKADSTRLL 47
>d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces
olivochromogenes [TaxId: 1963]}
Length = 386
Score = 22.2 bits (47), Expect = 8.8
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 17 DPFGNPTR 24
DPFG+ TR
Sbjct: 23 DPFGDATR 30
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 22.3 bits (47), Expect = 8.9
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 12/63 (19%)
Query: 5 KIRGRHFDAIDL----------DPFGNPTRFLDAAVSSLRDGGLLLVTCTDMAVLCGNTP 54
R R + +DL N R+L S D G L + T +
Sbjct: 173 AKRQRPGERLDLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQL--SGTAVPPQGAEPQ 230
Query: 55 ETC 57
Sbjct: 231 SNA 233
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.430
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,376
Number of extensions: 10357
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 22
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.1 bits)