BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4129
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 248 bits (632), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 116/206 (56%), Positives = 152/206 (73%), Gaps = 2/206 (0%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRP-VPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLF 64
QRC P+SIRLMDN QF+FG +L+P V F LDGLK+ YITK KGF +++ V TLLF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 65 EGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFET 124
EGD E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+RDL L+Y+I+ ESFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 125 SVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
S PWD+ + LC NVK+R+ RECK V+ L +CRVTQTYDAG CIYFYF +N+ G D
Sbjct: 531 SAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISD 590
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHY 209
P+ ++ E AR+EI+A ++ H+
Sbjct: 591 PLAVFEQTEAAAREEILANGGSLSHH 616
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 66/93 (70%)
Query: 210 LISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGK 269
L +CRVTQTYDAG CIYFYF +N+ G DP+ ++ E AR+EI+A GGS+SHHHGVGK
Sbjct: 562 LSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGK 621
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
LR W + +S VG + +S K +DP N+F N
Sbjct: 622 LRKQWLKESISDVGFGMLKSVKDYVDPTNIFGN 654
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 115/206 (55%), Positives = 152/206 (73%), Gaps = 2/206 (0%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRP-VPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLF 64
QRC P+SIRLMDN QF+FG +L+P V F LDGLK+ YITK KGF +++ V TLLF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 65 EGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFET 124
EGD E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+RDL L+Y+I+ ESFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 125 SVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
S PWD+ + LC NVK+R+ RECK V+ L +CRVTQTYDAG CI+FYF +N+ G D
Sbjct: 531 SAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIFFYFAFNYRGISD 590
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHY 209
P+ ++ E AR+EI+A ++ H+
Sbjct: 591 PLAVFEQTEAAAREEILANGGSLSHH 616
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 66/93 (70%)
Query: 210 LISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGK 269
L +CRVTQTYDAG CI+FYF +N+ G DP+ ++ E AR+EI+A GGS+SHHHGVGK
Sbjct: 562 LSTCRVTQTYDAGACIFFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGK 621
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
LR W + +S VG + +S K +DP N+F N
Sbjct: 622 LRKQWLKESISDVGFGMLKSVKDYVDPTNIFGN 654
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 115/206 (55%), Positives = 151/206 (73%), Gaps = 2/206 (0%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRP-VPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLF 64
QRC P+SI LMDN QF+FG +L+P V F LDGLK+ YITK KGF +++ V TLLF
Sbjct: 411 QRCAPASIHLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 65 EGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFET 124
EGD E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+RDL L+Y+I+ ESFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 125 SVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
S PWD+ + LC NVK+R+ RECK V+ L +CRVTQTYDAG CIYFYF +N+ G D
Sbjct: 531 SAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISD 590
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHY 209
P+ ++ E AR+EI+A ++ H+
Sbjct: 591 PLAVFEQTEAAAREEILANGGSLSHH 616
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 66/93 (70%)
Query: 210 LISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGK 269
L +CRVTQTYDAG CIYFYF +N+ G DP+ ++ E AR+EI+A GGS+SHHHGVGK
Sbjct: 562 LSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGK 621
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
LR W + +S VG + +S K +DP N+F N
Sbjct: 622 LRKQWLKESISDVGFGMLKSVKDYVDPTNIFGN 654
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 111/290 (38%), Gaps = 57/290 (19%)
Query: 10 PSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPE 69
P+ IR+ D + + + +P G + + Y+ I+ F +C++ + FEG +
Sbjct: 345 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 404
Query: 70 DVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWD 129
V ++ ++ I K G G + + YIRD LD+++ + ET+V +
Sbjct: 405 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 464
Query: 130 KAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYD 189
Q + ++ K V+H+
Sbjct: 465 NL--------QTLWKDAKQTFVKHF----------------------------------- 481
Query: 190 YIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHC 249
+D+ I I ++ TY G C+YF F KD + Y +
Sbjct: 482 ------KDQGIPA-------WICAHISHTYTNGVCLYFIFASKQNENKD-MAQYIEAKKL 527
Query: 250 ARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNV 299
D I GGS+SHHHGVG W + + + +Y+S K +DPK++
Sbjct: 528 MTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDI 577
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 299 VFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNI 344
+F GGS+SHHHGVG W + + + +Y+S K +DPK+I
Sbjct: 532 IFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDI 577
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 239 PIGSYDYIEHCAR---------DEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQS 289
P+G+ D E AR + ++ GGSIS HG+G + + +EL +S
Sbjct: 401 PVGA-DKAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVXKRDELAEVKDKTAIELXRS 459
Query: 290 TKRQLDPKNVFANG 303
K LDP + G
Sbjct: 460 IKALLDPHGIXNPG 473
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 303 GGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351
GGSIS HG+G + + +EL +S K LDP I G ++
Sbjct: 428 GGSISAEHGIGVXKRDELAEVKDKTAIELXRSIKALLDPHGIXNPGKVV 476
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,624,948
Number of Sequences: 62578
Number of extensions: 502871
Number of successful extensions: 1226
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 18
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)