BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4129
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 272 bits (695), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 147/346 (42%), Positives = 185/346 (53%), Gaps = 100/346 (28%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFE 65
+RCQP+S+RLMDN QF FGQ+L+P ++ ++D +K+ Y+T KG ++++C TLLFE
Sbjct: 364 RRCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMKQRYVTSWKGIDLNQICAATLLFE 423
Query: 66 GDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETS 125
GD +DV++ +A IY IA KF G PAG NG RGY+LTFVIAYIRD L I+AESFETS
Sbjct: 424 GDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAESFETS 483
Query: 126 VPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPI 185
VPWD+ LLC +VKQRV
Sbjct: 484 VPWDRCSLLCRSVKQRV------------------------------------------- 500
Query: 186 GSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDY 245
+ C++ I +Y ISCRVTQTYDAG CIYFYFG+ DP+ ++
Sbjct: 501 -----VSECSKRSI-------NYYTISCRVTQTYDAGACIYFYFGFRSTDVADPVELFEA 548
Query: 246 IEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGS 305
IEH ARDEI++C GGS
Sbjct: 549 IEHSARDEILSC---------------------------------------------GGS 563
Query: 306 ISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351
+SHHHGVGK+RSHWY V+ G LY + KR LDPKNIFA GNLL
Sbjct: 564 LSHHHGVGKIRSHWYRNAVTETGSSLYSAAKRHLDPKNIFALGNLL 609
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 137/298 (45%), Positives = 176/298 (59%), Gaps = 55/298 (18%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRP-VPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLF 64
QRC P+SIRLMDN QF+FG +L+P V F LDGLK+ YITK KGF +++ V TLLF
Sbjct: 411 QRCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 65 EGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFET 124
EGD E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAYIRDLAL+Y++L ESFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFET 530
Query: 125 SVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDP 184
S PWD RV C+ NV+ R+T+ + F
Sbjct: 531 SAPWD-----------RVVDLCR--NVKE-----RITRECKEKGVQFAPFS--------- 563
Query: 185 IGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYD 244
+CRVTQTYDAG CIYFYF +N+ G DP+ ++
Sbjct: 564 ---------------------------TCRVTQTYDAGACIYFYFAFNYRGISDPLTVFE 596
Query: 245 YIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
E AR+EI+A GGS+SHHHGVGKLR W + +S VG + +S K +DP N+F N
Sbjct: 597 QTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKEYVDPNNIFGN 654
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/206 (56%), Positives = 153/206 (74%), Gaps = 2/206 (0%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRP-VPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLF 64
QRC P+SIRLMDN QF+FG +L+P V F LDGLK+ YITK KGF +++ V TLLF
Sbjct: 398 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLF 457
Query: 65 EGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFET 124
EGD E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAYIRDL L+Y+++ ESFET
Sbjct: 458 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFET 517
Query: 125 SVPWDKAILLCTNVKQRVARECKVMNVEHY-LISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
S PWD+ I LC NVK+R+ RECK V+ L +CRVTQTYDAG CIYFYF +N+ G D
Sbjct: 518 SAPWDRVIDLCRNVKERIRRECKERGVQFAPLSTCRVTQTYDAGACIYFYFAFNYRGISD 577
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHY 209
P+ +++ E AR+EI+A ++ H+
Sbjct: 578 PLTVFEHTEAAAREEILANGGSLSHH 603
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 210 LISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGK 269
L +CRVTQTYDAG CIYFYF +N+ G DP+ +++ E AR+EI+A GGS+SHHHGVGK
Sbjct: 549 LSTCRVTQTYDAGACIYFYFAFNYRGISDPLTVFEHTEAAAREEILANGGSLSHHHGVGK 608
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
+R W + +S VG + +S K +DP N+F N
Sbjct: 609 IRKQWLKESISDVGFGMLKSVKEYVDPSNIFGN 641
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 248 bits (632), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 116/206 (56%), Positives = 152/206 (73%), Gaps = 2/206 (0%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRP-VPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLF 64
QRC P+SIRLMDN QF+FG +L+P V F LDGLK+ YITK KGF +++ V TLLF
Sbjct: 411 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLF 470
Query: 65 EGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFET 124
EGD E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+RDL L+Y+I+ ESFET
Sbjct: 471 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFET 530
Query: 125 SVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
S PWD+ + LC NVK+R+ RECK V+ L +CRVTQTYDAG CIYFYF +N+ G D
Sbjct: 531 SAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVTQTYDAGACIYFYFAFNYRGISD 590
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHY 209
P+ ++ E AR+EI+A ++ H+
Sbjct: 591 PLAVFEQTEAAAREEILANGGSLSHH 616
Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 51/93 (54%), Positives = 66/93 (70%)
Query: 210 LISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGK 269
L +CRVTQTYDAG CIYFYF +N+ G DP+ ++ E AR+EI+A GGS+SHHHGVGK
Sbjct: 562 LSTCRVTQTYDAGACIYFYFAFNYRGISDPLAVFEQTEAAAREEILANGGSLSHHHGVGK 621
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
LR W + +S VG + +S K +DP N+F N
Sbjct: 622 LRKQWLKESISDVGFGMLKSVKDYVDPTNIFGN 654
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 247 bits (630), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 116/206 (56%), Positives = 151/206 (73%), Gaps = 2/206 (0%)
Query: 6 QRCQPSSIRLMDNAQFKFGQSLRP-VPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLF 64
QRC P+SIRLMDN QF+FG +L+P V F LDG K+ YITK KGF +++ V TLLF
Sbjct: 397 QRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGFKKFYITKFKGFDPNQISVATLLF 456
Query: 65 EGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFET 124
EGD E V +++ ++Y IA KFGG+ AGE NG RGY+LT+VIAY+RDL L+Y+++ ESFET
Sbjct: 457 EGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGESFET 516
Query: 125 SVPWDKAILLCTNVKQRVARECKVMNVEHY-LISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
S PWD+ I LC NVK+R+ RECK V+ L +CRVTQTYDAG CIYFYF +N+ G D
Sbjct: 517 SAPWDRVIDLCRNVKERIRRECKERGVQFAPLSTCRVTQTYDAGACIYFYFAFNYRGISD 576
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHY 209
P+ ++ E ARDEI+A ++ H+
Sbjct: 577 PLTVFEQTEAAARDEILANGGSLSHH 602
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 66/93 (70%)
Query: 210 LISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGK 269
L +CRVTQTYDAG CIYFYF +N+ G DP+ ++ E ARDEI+A GGS+SHHHGVGK
Sbjct: 548 LSTCRVTQTYDAGACIYFYFAFNYRGISDPLTVFEQTEAAARDEILANGGSLSHHHGVGK 607
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
LR W + +S VG + +S K +DP N+F N
Sbjct: 608 LRKQWLKESISDVGFGMLKSVKDYVDPSNIFGN 640
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 127/303 (41%), Positives = 172/303 (56%), Gaps = 55/303 (18%)
Query: 5 VQRCQPSSIRLMDNAQFKFGQSLRPVP-GYFGLLLDGLKRIYITKIKGFSVDEMCVTTLL 63
+QRCQP+S+RLMDN QF GQ+L+ ++ L + ++YIT KGF VDE+C T +
Sbjct: 339 IQRCQPASLRLMDNDQFVMGQALKVASDSWWADLKSSVSKMYITSWKGFKVDEICAATCV 398
Query: 64 FEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFE 123
+EG+ E+V +++ ++ +A +F G+ G NG GY LTF IAY+RDL +++ +L ESFE
Sbjct: 399 YEGNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFE 458
Query: 124 TSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
TSVPWDK + LC NVK+ + RE K G
Sbjct: 459 TSVPWDKVLSLCRNVKELMKREAKAQ------------------------------GVTH 488
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSY 243
P+ L +CRVTQ YDAG C+YFYFG+N G K+ + Y
Sbjct: 489 PV------------------------LANCRVTQVYDAGACVYFYFGFNARGLKNGLEVY 524
Query: 244 DYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
D IE ARDEIIACGGSISHHHGVGK+R W +VG+ L ++ K +LDP N+FA+
Sbjct: 525 DRIETAARDEIIACGGSISHHHGVGKIRKQWMLTTNGAVGIALLKAIKSELDPANIFASA 584
Query: 304 GSI 306
I
Sbjct: 585 NLI 587
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum
GN=eapA PE=1 SV=1
Length = 611
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/290 (21%), Positives = 110/290 (37%), Gaps = 57/290 (19%)
Query: 10 PSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPE 69
P+ IR+ D + + + +P G + + Y+ I+ F +C++ + FEG +
Sbjct: 348 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 407
Query: 70 DVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWD 129
V ++ ++ I K G G + + YIRD LD+++ + ET+V +
Sbjct: 408 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 467
Query: 130 KAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYD 189
Q + ++ K V+H+ D G +
Sbjct: 468 NL--------QTLWKDAKQTFVKHF---------KDQGIPAW------------------ 492
Query: 190 YIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHC 249
I ++ TY G C+YF F KD + Y +
Sbjct: 493 ---------------------ICAHISHTYTNGVCLYFIFASKQNENKD-MAQYIEAKKL 530
Query: 250 ARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNV 299
D I GGS+SHHHGVG W + + + +Y+S K +DPK++
Sbjct: 531 MTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDI 580
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 299 VFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNI 344
+F GGS+SHHHGVG W + + + +Y+S K +DPK+I
Sbjct: 535 IFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDI 580
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 1/165 (0%)
Query: 10 PSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPE 69
P ++RL D + + G + YI +KG+++ ++ + + FEG
Sbjct: 338 PCTMRLYDEDDTRLSFAASTDSGLVSTFFSKCFKKYIATVKGWNLSKISLVVVGFEGTKA 397
Query: 70 DVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWD 129
++++ + FG G G + + Y+RD AL ++ A+ FETSV +
Sbjct: 398 QTNCQRSELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFETSVLYT 457
Query: 130 KAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYF 174
AI VK+ A E N ++ I C Y GCC+YF F
Sbjct: 458 DAIHCWRAVKKSFA-EVMAENGKNAWIGCHTAHQYRFGCCLYFTF 501
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 193 HCAR--DEIIACVM--NVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDP--IGSYDYI 246
HC R + A VM N ++ I C Y GCC+YF F GQ D + + +
Sbjct: 461 HCWRAVKKSFAEVMAENGKNAWIGCHTAHQYRFGCCLYFTF---IGGQADENDLKIFLQV 517
Query: 247 EHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNV 299
+ A + ++ G+++HHHG+G W + G++ K+ LDPKN+
Sbjct: 518 KKRAMEVMLQHRGNLTHHHGIGYEHVPWMKRYNGEGGLDAIMKFKKALDPKNI 570
>sp|Q8X7S0|YGCU_ECO57 Uncharacterized FAD-linked oxidoreductase YgcU OS=Escherichia coli
O157:H7 GN=ygcU PE=3 SV=1
Length = 484
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 216 TQTYDAGCCIYFYFGYNFMGQK--DPIGSY-DYIEHCARDEIIACGGSISHHHGVGKLRS 272
+ +Y G +YF + YN + K + I Y + + +E I GGS+ HHHG+GK R
Sbjct: 388 SHSYQNGTNMYFVYDYNVVNCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRV 447
Query: 273 HWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
HW + S L + K+Q DP + G
Sbjct: 448 HWSKLEHGSAWA-LLEGLKKQFDPNGIMNTG 477
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 252 DEIIACGGSISHHHGVGKLRSHWYPKQVSSVG----VELYQSTKRQLDPKNVFANGGSIS 307
D+I GG SH + G Y V + ++ Y + ++ + GGS+
Sbjct: 378 DDITMLGGHSSHSYQNGTNMYFVYDYNVVNCKPEEEIDKYHNPLNKIICEETIRLGGSMV 437
Query: 308 HHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNL 350
HHHG+GK R HW + S L + K+Q DP I G +
Sbjct: 438 HHHGIGKHRVHWSKLEHGSAWA-LLEGLKKQFDPNGIMNTGTI 479
>sp|Q46911|YGCU_ECOLI Uncharacterized FAD-linked oxidoreductase YgcU OS=Escherichia coli
(strain K12) GN=ygcU PE=3 SV=4
Length = 484
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 216 TQTYDAGCCIYFYFGYNFMGQK--DPIGSY-DYIEHCARDEIIACGGSISHHHGVGKLRS 272
+ +Y G +YF + YN + K + I Y + + +E I GGS+ HHHG+GK R
Sbjct: 388 SHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRV 447
Query: 273 HWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
HW + S L + K+Q DP + G
Sbjct: 448 HWSKLEHGSAWA-LLEGLKKQFDPNGIMNTG 477
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 252 DEIIACGGSISHHHGVGKLRSHWYPKQV----SSVGVELYQSTKRQLDPKNVFANGGSIS 307
D+I GG SH + G Y V ++ Y + ++ + GGS+
Sbjct: 378 DDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMV 437
Query: 308 HHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNL 350
HHHG+GK R HW + S L + K+Q DP I G +
Sbjct: 438 HHHGIGKHRVHWSKLEHGSAWA-LLEGLKKQFDPNGIMNTGTI 479
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168)
GN=glcD PE=3 SV=1
Length = 470
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 14/100 (14%)
Query: 215 VTQTYDAGCCIYFYFGYNFMGQKDP-----IGSYDYIEHCAR------DEIIACGGSISH 263
+ YD C FG+ G P I + D +E + ++ I GG+I+
Sbjct: 359 IAAKYDISIC---TFGHAGDGNLHPTCTTDIRNKDEMERVEQAFAEIFEKAIELGGTITG 415
Query: 264 HHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
HGVG++++ + ++ G++ ++ K DP+N+ G
Sbjct: 416 EHGVGEMKAPYLEMKLKKEGIDAMKALKAAFDPRNILNPG 455
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 303 GGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNL 350
GG+I+ HGVG++++ + ++ G++ ++ K DP+NI G +
Sbjct: 410 GGTITGEHGVGEMKAPYLEMKLKKEGIDAMKALKAAFDPRNILNPGKM 457
>sp|Q7TNG8|LDHD_MOUSE Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus
GN=Ldhd PE=1 SV=1
Length = 484
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 297 KNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351
+ A GG+ + HG+G + ++V VGVE + K LDP+ + G +L
Sbjct: 430 RRALALGGTCTGEHGIGLGKRQLLQEEVGPVGVETMRQLKNTLDPRGLMNPGKVL 484
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 245 YIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
+ E+ R +A GG+ + HG+G + ++V VGVE + K LDP+ + G
Sbjct: 424 FAENLGR-RALALGGTCTGEHGIGLGKRQLLQEEVGPVGVETMRQLKNTLDPRGLMNPG 481
>sp|P0AEP9|GLCD_ECOLI Glycolate oxidase subunit GlcD OS=Escherichia coli (strain K12)
GN=glcD PE=3 SV=1
Length = 499
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 213 CRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIE--HCARDE---------IIACGGSI 261
R++Q YD F+ G G P+ +D E AR E + GGSI
Sbjct: 371 ARLSQQYDLRVANVFHAGD---GNMHPLILFDANEPGEFARAEELGGKILELCVEVGGSI 427
Query: 262 SHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHH 310
S HG+G+ + + Q +S + + + K DP + G +I H
Sbjct: 428 SGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLH 476
>sp|P0AEQ0|GLCD_ECOL6 Glycolate oxidase subunit GlcD OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=glcD PE=3 SV=1
Length = 499
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 213 CRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIE--HCARDE---------IIACGGSI 261
R++Q YD F+ G G P+ +D E AR E + GGSI
Sbjct: 371 ARLSQQYDLRVANVFHAGD---GNMHPLILFDANEPGEFARAEELGGKILELCVEVGGSI 427
Query: 262 SHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHH 310
S HG+G+ + + Q +S + + + K DP + G +I H
Sbjct: 428 SGEHGIGREKINQMCAQFNSDEITTFHAVKAAFDPDGLLNPGKNIPTLH 476
>sp|Q5HAU5|RPOA_EHRRW DNA-directed RNA polymerase subunit alpha OS=Ehrlichia ruminantium
(strain Welgevonden) GN=rpoA PE=3 SV=2
Length = 374
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 8 CQPSSIRLMD--NAQFKFGQSLRPVPGYFGLLL-DGLKRIYITKIKGFSVDEMCVTTLLF 64
+PSSI++++ NA K + P+ F L L + L+R+ ++ ++GF+V + + +L
Sbjct: 40 TKPSSIKVVNHGNALNKADLIIEPLESGFALTLGNALRRVMMSSLRGFAVYGVEIENVLH 99
Query: 65 E-----GDPEDVKKNQAKIYSIALKFGGI 88
E G EDV I I LK G+
Sbjct: 100 EFTSISGVREDVTDILLNISMIRLKLSGM 128
>sp|Q50685|Y2280_MYCTU Uncharacterized FAD-linked oxidoreductase Rv2280 OS=Mycobacterium
tuberculosis GN=Rv2280 PE=1 SV=1
Length = 459
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 303 GGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348
GG+IS HGVG+ ++ ++ + V + L + K+ DP I G
Sbjct: 408 GGAISGEHGVGRAKTGYFLELEDPVKISLMRRIKQSFDPAGILNPG 453
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 257 CGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
GG+IS HGVG+ ++ ++ + V + L + K+ DP + G
Sbjct: 407 LGGAISGEHGVGRAKTGYFLELEDPVKISLMRRIKQSFDPAGILNPG 453
>sp|Q5FFS1|RPOA_EHRRG DNA-directed RNA polymerase subunit alpha OS=Ehrlichia ruminantium
(strain Gardel) GN=rpoA PE=3 SV=1
Length = 374
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 8 CQPSSIRLMD--NAQFKFGQSLRPVPGYFGLLL-DGLKRIYITKIKGFSVDEMCVTTLLF 64
+PSSI++++ NA K + P+ F L L + L+R+ ++ ++GF+V + + +L
Sbjct: 40 TKPSSIKVVNHGNALNKADLIIEPLESGFALTLGNALRRVMMSSLRGFAVYGVEIENVLH 99
Query: 65 E-----GDPEDVKKNQAKIYSIALKFGGI 88
E G EDV I I LK G+
Sbjct: 100 EFTSISGVREDVTDILLNISMIRLKLSGM 128
>sp|Q86WU2|LDHD_HUMAN Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens
GN=LDHD PE=1 SV=1
Length = 507
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 3/115 (2%)
Query: 239 PIGSYDYIEHCARDEIIACG--GSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDP 296
PI I ++++ A G GSI H G G + + ++ QL
Sbjct: 394 PISRLPEIVVQTKEDLNASGLTGSIVGHVGDGNFHCILLVNPDDAEELGRVKAFAEQLG- 452
Query: 297 KNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351
+ A G+ + HG+G + ++V +VGVE + K LDP+ + G +L
Sbjct: 453 RRALALHGTCTGEHGIGMGKRQLLQEEVGAVGVETMRQLKAVLDPQGLMNPGKVL 507
>sp|Q7XI14|D2HDH_ORYSJ Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. japonica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGV 329
L + + K ++ + +Y+ T +Q GSIS HG+G +++ SS V
Sbjct: 482 LSTKYSDKMLAQIEPFVYEWTSKQR---------GSISAEHGLGLMKAEKIHYSKSSEAV 532
Query: 330 ELYQSTKRQLDPKNIF 345
+L S K+ LDP +I
Sbjct: 533 QLMASIKKLLDPNSIL 548
>sp|B8B7X6|D2HDH_ORYSI Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. indica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 9/76 (11%)
Query: 270 LRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGV 329
L + + K ++ + +Y+ T +Q GSIS HG+G +++ SS V
Sbjct: 482 LSTKYSDKMLAQIEPFVYEWTSKQR---------GSISAEHGLGLMKADKIHYSKSSEAV 532
Query: 330 ELYQSTKRQLDPKNIF 345
+L S K+ LDP +I
Sbjct: 533 QLMTSIKKLLDPNSIL 548
>sp|A1L3M3|YLAT2_XENLA Y+L amino acid transporter 2 OS=Xenopus laevis GN=slc7a6 PE=2 SV=1
Length = 510
Score = 33.1 bits (74), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 18 NAQFKFGQSLRPVPGYF-GLLLDGLKRI-YITKIKGFSV--DEMCVTTLLFEGDPEDVKK 73
N+ G +L +P YF G+ L KR +I+KI F +M + +L E DP D KK
Sbjct: 445 NSLIGIGIALSGIPVYFMGIYLPESKRPPFISKILAFLTRWTQMIFSCVLTEMDPNDEKK 504
Query: 74 NQAK 77
+AK
Sbjct: 505 EEAK 508
>sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis
thaliana GN=DLD PE=1 SV=1
Length = 567
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 304 GSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLLRSHL 355
G+ + HGVG + + K++ ++ + K+ LDP +I G L+ H+
Sbjct: 514 GTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKTLDPNDIMNPGKLIPPHV 565
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,542,225
Number of Sequences: 539616
Number of extensions: 6019619
Number of successful extensions: 13586
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 13524
Number of HSP's gapped (non-prelim): 48
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)