Query psy4129
Match_columns 355
No_of_seqs 224 out of 1993
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 17:40:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4129.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4129hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 100.0 9.9E-47 2.1E-51 366.3 8.3 247 4-305 364-612 (613)
2 PF02913 FAD-oxidase_C: FAD li 100.0 1.5E-33 3.2E-38 259.2 7.5 217 3-305 25-248 (248)
3 PLN02805 D-lactate dehydrogena 100.0 4.9E-31 1.1E-35 274.2 21.7 214 4-307 332-550 (555)
4 PRK11230 glycolate oxidase sub 100.0 1.9E-27 4.2E-32 245.0 20.2 215 4-308 255-474 (499)
5 TIGR00387 glcD glycolate oxida 100.0 1.5E-27 3.2E-32 240.3 18.9 211 4-304 198-413 (413)
6 PLN02805 D-lactate dehydrogena 99.8 1.9E-20 4.2E-25 195.1 9.8 149 194-355 403-553 (555)
7 PF02913 FAD-oxidase_C: FAD li 99.8 1.7E-20 3.7E-25 172.3 6.0 144 196-350 103-248 (248)
8 TIGR00387 glcD glycolate oxida 99.7 1.6E-17 3.4E-22 167.7 9.1 141 194-349 271-413 (413)
9 PRK11230 glycolate oxidase sub 99.7 2E-17 4.3E-22 170.8 9.9 144 194-352 328-473 (499)
10 KOG1232|consensus 99.7 2.4E-16 5.3E-21 154.3 13.2 208 9-306 296-511 (511)
11 COG0277 GlcD FAD/FMN-containin 99.6 1.6E-14 3.5E-19 145.7 19.0 213 6-308 237-458 (459)
12 KOG1232|consensus 99.5 6.3E-14 1.4E-18 137.5 8.2 136 194-351 369-511 (511)
13 KOG1231|consensus 99.4 8.2E-14 1.8E-18 139.2 -0.3 220 4-307 267-498 (505)
14 KOG1233|consensus 99.3 4.3E-13 9.3E-18 132.0 3.7 100 207-351 514-613 (613)
15 COG0277 GlcD FAD/FMN-containin 99.2 2.3E-11 4.9E-16 122.9 8.1 144 194-353 310-458 (459)
16 KOG1231|consensus 98.7 4.7E-09 1E-13 105.5 1.9 92 259-353 408-499 (505)
17 PRK11282 glcE glycolate oxidas 97.9 1.6E-05 3.4E-10 79.4 5.4 50 302-353 302-351 (352)
18 PRK11282 glcE glycolate oxidas 95.6 0.027 5.8E-07 56.5 6.5 59 248-308 293-351 (352)
19 PF09330 Lact-deh-memb: D-lact 94.2 0.59 1.3E-05 45.4 11.2 51 243-303 231-281 (291)
20 PRK11183 D-lactate dehydrogena 93.1 3.8 8.2E-05 43.6 15.8 125 203-349 427-551 (564)
21 PLN00107 FAD-dependent oxidore 91.0 2.2 4.8E-05 41.0 10.3 56 240-301 136-195 (257)
22 TIGR01679 bact_FAD_ox FAD-link 90.6 1.4 2.9E-05 45.1 9.1 117 120-301 289-410 (419)
23 PF04030 ALO: D-arabinono-1,4- 90.6 1.3 2.9E-05 41.8 8.5 124 119-301 125-252 (259)
24 PRK11183 D-lactate dehydrogena 89.7 2.6 5.7E-05 44.8 10.4 51 243-303 500-550 (564)
25 PF09265 Cytokin-bind: Cytokin 85.5 1.8 3.9E-05 42.2 5.9 80 215-304 188-278 (281)
26 PF09330 Lact-deh-memb: D-lact 82.5 1.7 3.7E-05 42.2 4.3 138 190-349 143-282 (291)
27 PF08031 BBE: Berberine and be 81.7 0.82 1.8E-05 32.4 1.3 29 318-347 14-42 (47)
28 PF09265 Cytokin-bind: Cytokin 80.0 1 2.3E-05 43.9 1.9 34 314-349 245-278 (281)
29 TIGR01677 pln_FAD_oxido plant- 79.6 14 0.00031 39.4 10.4 75 220-302 424-502 (557)
30 PLN02441 cytokinin dehydrogena 78.5 1.4 3.1E-05 46.5 2.5 28 325-353 492-520 (525)
31 TIGR01678 FAD_lactone_ox sugar 74.0 20 0.00044 37.0 9.4 125 122-301 305-436 (438)
32 PLN02441 cytokinin dehydrogena 72.3 31 0.00067 36.6 10.4 77 216-303 428-514 (525)
33 TIGR01676 GLDHase galactonolac 71.3 50 0.0011 35.3 11.7 39 119-161 380-426 (541)
34 PLN02465 L-galactono-1,4-lacto 70.4 45 0.00097 35.9 11.2 54 241-301 497-562 (573)
35 COG3286 Uncharacterized protei 68.1 12 0.00027 34.5 5.6 87 58-144 37-134 (204)
36 PF08031 BBE: Berberine and be 51.0 14 0.0003 26.1 2.2 20 283-302 23-42 (47)
37 COG0019 LysA Diaminopimelate d 37.7 1.3E+02 0.0028 30.8 7.7 32 285-316 254-290 (394)
38 PF09840 DUF2067: Uncharacteri 27.4 2E+02 0.0043 26.5 6.4 86 58-143 34-130 (190)
39 PF00676 E1_dh: Dehydrogenase 26.9 3E+02 0.0064 26.8 8.0 81 59-147 187-289 (300)
40 PF04030 ALO: D-arabinono-1,4- 21.6 56 0.0012 30.7 1.8 27 319-347 227-253 (259)
41 COG3618 Predicted metal-depend 21.4 3.7E+02 0.0081 26.4 7.3 96 59-163 54-172 (279)
42 PRK01236 S-adenosylmethionine 20.7 5.6E+02 0.012 22.1 9.1 19 213-231 64-83 (131)
43 COG1071 AcoA Pyruvate/2-oxoglu 20.5 4.2E+02 0.0091 26.9 7.7 77 61-146 225-323 (358)
44 PLN00061 photosystem II protei 20.2 68 0.0015 28.5 1.8 24 330-353 31-54 (150)
No 1
>KOG1233|consensus
Probab=100.00 E-value=9.9e-47 Score=366.32 Aligned_cols=247 Identities=57% Similarity=1.057 Sum_probs=228.2
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCCC-CccccccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVP-GYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIA 82 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~ 82 (355)
..++|+|+++|||||.|+.+++++++.. +..+.++|.+|+.|+|++|||+.++-|..++.|||+.++|+++.+++.+|+
T Consensus 364 A~qRCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdre~V~qhE~~~y~iA 443 (613)
T KOG1233|consen 364 AIQRCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDREEVDQHEERLYKIA 443 (613)
T ss_pred HHHhcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999886 788899999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCchhHhHhHHHhhhhHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeE-eEee
Q psy4129 83 LKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLIS-CRVT 161 (355)
Q Consensus 83 ~~~g~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~-~h~g 161 (355)
++++|...+.+++++.|.+.|+++|+|++.+.++++.+++||+|||++...+++.+++++.+||++.|+..+.+. |+++
T Consensus 444 ekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~s~CRVT 523 (613)
T KOG1233|consen 444 EKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVLSNCRVT 523 (613)
T ss_pred HHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875555 9999
Q ss_pred eecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccc
Q psy4129 162 QTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIG 241 (355)
Q Consensus 162 h~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~ 241 (355)
++||+|+||||||+||..|.+||+.-|+-||+.+|||
T Consensus 524 QtYDAGACiYFYFgFn~rg~~dplevfe~iE~aARdE------------------------------------------- 560 (613)
T KOG1233|consen 524 QTYDAGACIYFYFGFNARGLKDPLEVFERIETAARDE------------------------------------------- 560 (613)
T ss_pred EEecCceEEEEEEeeccccCCchHHHHHHHHHHhHHH-------------------------------------------
Confidence 9999999999999999998777766666666665554
Q ss_pred hHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCc
Q psy4129 242 SYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGS 305 (355)
Q Consensus 242 ~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~ 305 (355)
++..||++|||||||..++.||....++.++.+++++|..+||+||+..+.+
T Consensus 561 ------------IlacGGSlSHHHGVGKiRkqW~~~~~~~vG~~llka~K~~lDP~NIFa~~NL 612 (613)
T KOG1233|consen 561 ------------ILACGGSLSHHHGVGKIRKQWMLTTNGAVGIALLKAIKSELDPANIFASANL 612 (613)
T ss_pred ------------HHhcCCcccccccchHHHHHHHHhhhhhHhHHHHHHHHHhcChhhhcccccc
Confidence 4678999999999999999999999999999999999999999999887654
No 2
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=100.00 E-value=1.5e-33 Score=259.17 Aligned_cols=217 Identities=22% Similarity=0.342 Sum_probs=169.9
Q ss_pred ccccCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhccCCCCCCceEEEEEEEcCH-HHHHHHHH-HHHH
Q psy4129 3 RMVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDP-EDVKKNQA-KIYS 80 (355)
Q Consensus 3 ~~~~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~-~~v~~~~~-~i~~ 80 (355)
.+++|+.|+++||||+.+++......+ ..++.+..++|+++|+|+. +.++.+.+ .+.+
T Consensus 25 i~~~g~~p~a~el~d~~~~~~~~~~~~--------------------~~~~~~~~~~llv~~~g~~~~~~~~~~~~~i~~ 84 (248)
T PF02913_consen 25 IMQSGIIPSAIELLDSAALKLALEHWG--------------------EPLPPEGGAVLLVEFEGSDEEAVEEQLEAEIEE 84 (248)
T ss_dssp CCHHCSSCCECCCCHHHHHHHHHHSEE--------------------ETSSTTTSEEEEEECCCHHHCCHHHHHHHHHHH
T ss_pred HHHcCCCceEEeeeCHHHHHHHHhhcC--------------------CCccCCcccEEEEEECCCcHHHHHHHHHHHHHH
Confidence 456799999999999999987542110 1334567799999999987 56777777 8999
Q ss_pred HHHHcCCCCC----chhHhHhHHHhhh-hHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccce
Q psy4129 81 IALKFGGIPA----GETNGMRGYMLTF-VIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYL 155 (355)
Q Consensus 81 i~~~~g~~~~----~~~~~~~~~~~R~-~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~ 155 (355)
++++.++..+ +++..+++|..|+ ..++++......+...+++|++|||++++++++.++++++ +++ +
T Consensus 85 ~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~----~~~----~ 156 (248)
T PF02913_consen 85 ICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLR----EYG----L 156 (248)
T ss_dssp HHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHH----HCT----E
T ss_pred HHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhh----hcc----c
Confidence 9999888762 3444567888886 4455555445667778899999999999999999988775 566 4
Q ss_pred eEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCC
Q psy4129 156 ISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMG 235 (355)
Q Consensus 156 ~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~ 235 (355)
..+++||+||+|.|+|+++...
T Consensus 157 ~~~~~gH~~~g~~h~~~~~~~~---------------------------------------------------------- 178 (248)
T PF02913_consen 157 EVCHFGHAGDGNLHLYILFDPR---------------------------------------------------------- 178 (248)
T ss_dssp EEEEEEEEEECEEEEEEEEETT----------------------------------------------------------
T ss_pred cccceEEccCCeEEEEeecccc----------------------------------------------------------
Confidence 5688999999876665544211
Q ss_pred CCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCc
Q psy4129 236 QKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGS 305 (355)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~ 305 (355)
++++.+.++++.+.+.+.+.++||++|+|||+|..|.+|+..+.++..+++|++||++|||++||||||+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 179 DPEEPERAEALWDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG-
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccccccccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCCC
Confidence 2345667778888999999999999999999999999999999999999999999999999999999985
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.97 E-value=4.9e-31 Score=274.16 Aligned_cols=214 Identities=17% Similarity=0.192 Sum_probs=166.3
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIAL 83 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~~ 83 (355)
+++|+.|+++||||+.+++..+. +. + .++| +.++|++||+|++++++++.+.+.++++
T Consensus 332 ~~~g~~psa~ElmD~~~~~~~~~------------------~~-~-~~~p--~~~~Ll~e~~g~~~~~~~~~~~~~~i~~ 389 (555)
T PLN02805 332 MLSGIQVSRVELLDEVQIRAINM------------------AN-G-KNLP--EAPTLMFEFIGTEAYAREQTLIVQKIAS 389 (555)
T ss_pred HhCCCCcEEEEEECHHHHHHHHH------------------hc-C-CCCC--cceEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 46799999999999999875321 11 0 1333 3589999999998889999999999999
Q ss_pred HcCCCCC----chhHhHhHHHhhhhH-HHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEe
Q psy4129 84 KFGGIPA----GETNGMRGYMLTFVI-AYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISC 158 (355)
Q Consensus 84 ~~g~~~~----~~~~~~~~~~~R~~~-~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 158 (355)
++|+..+ ++++.+++|..|... +.+... .+....+++|++||||+|+++++++++.+. ++++. .+
T Consensus 390 ~~g~~~~~~a~~~~e~~~lW~~R~~~~~~~~~~--~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~----~~~~~----~~ 459 (555)
T PLN02805 390 KHNGSDFVFAEEPEAKKELWKIRKEALWACFAM--EPKYEAMITDVCVPLSHLAELISRSKKELD----ASPLV----CT 459 (555)
T ss_pred hCCCceEEEeCCHHHHHHHHHHHHHHHHHHhhc--CCCCceeEEEEEEEHHHHHHHHHHHHHHHH----HcCCe----EE
Confidence 9988642 345556788888743 444322 233335678999999999999999988764 67854 46
Q ss_pred EeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCC
Q psy4129 159 RVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKD 238 (355)
Q Consensus 159 h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~ 238 (355)
++||++|+. +|+.+.++. ++++
T Consensus 460 ~~gHaGdGn---------------------------------------------------------lH~~i~~~~-~~~~ 481 (555)
T PLN02805 460 VIAHAGDGN---------------------------------------------------------FHTIILFDP-SQED 481 (555)
T ss_pred EEEEcCCCc---------------------------------------------------------EEEEeccCC-CCHH
Confidence 678877742 222233332 1234
Q ss_pred ccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCccc
Q psy4129 239 PIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSIS 307 (355)
Q Consensus 239 ~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is 307 (355)
+.++++++.+.+.+.++++||++|||||||..|.+|+..++++..+++|++||++|||++||||||+++
T Consensus 482 ~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 482 QRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 456778899999999999999999999999999999999999999999999999999999999999996
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.95 E-value=1.9e-27 Score=244.96 Aligned_cols=215 Identities=17% Similarity=0.284 Sum_probs=165.8
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIAL 83 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~~ 83 (355)
+++++.|+++||||+..+..... |+. .++|.+..++|+++++|++++++.+.+.+.++++
T Consensus 255 ~~~~~~p~~~el~d~~~~~~~~~------------------~~~--~~~p~~~~~~ll~e~~g~~~~v~~~~~~l~~~~~ 314 (499)
T PRK11230 255 IAAGIIPGGLEMMDNLSIRAAED------------------FIH--AGYPVDAEAILLCELDGVESDVQEDCERVNDILL 314 (499)
T ss_pred HhcCCCcEEEEeeCHHHHHHHHH------------------hcC--CCCCCCcceEEEEEecCCchHHHHHHHHHHHHHH
Confidence 46789999999999998865221 221 2445456689999999998889999999999999
Q ss_pred HcCCCCC----chhHhHhHHHhhh-hHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEe
Q psy4129 84 KFGGIPA----GETNGMRGYMLTF-VIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISC 158 (355)
Q Consensus 84 ~~g~~~~----~~~~~~~~~~~R~-~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 158 (355)
++|+... +++..+.+|..|+ ..|+++... +.. +.+|++|||++|+++++.+++..+ ++++. +.
T Consensus 315 ~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~--~~~--~~~dv~vP~~~l~~~~~~~~~~~~----~~~~~----~~ 382 (499)
T PRK11230 315 KAGATDVRLAQDEAERVRFWAGRKNAFPAVGRIS--PDY--YCMDGTIPRRELPGVLEGIARLSQ----QYGLR----VA 382 (499)
T ss_pred hcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhhC--CCe--eEEeecCChHHHHHHHHHHHHHHH----HcCCe----EE
Confidence 9987553 2344566888885 567776532 332 357999999999999999988653 67754 46
Q ss_pred EeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCC
Q psy4129 159 RVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKD 238 (355)
Q Consensus 159 h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~ 238 (355)
++||++|+.+++ .+.++. +++.
T Consensus 383 ~~gH~GdGn~H~---------------------------------------------------------~i~~~~-~~~~ 404 (499)
T PRK11230 383 NVFHAGDGNMHP---------------------------------------------------------LILFDA-NEPG 404 (499)
T ss_pred EEEEeCCCccee---------------------------------------------------------eecCCC-CCHH
Confidence 677777754222 122221 1122
Q ss_pred ccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcccc
Q psy4129 239 PIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISH 308 (355)
Q Consensus 239 ~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~ 308 (355)
+.++++++.+.+.+.+.++||++|+|||+|..|.+|+..++++..+.+|++||++|||++|||||+.|..
T Consensus 405 ~~~~~~~~~~~l~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~~~ 474 (499)
T PRK11230 405 ELERAEALGGKILELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNIPT 474 (499)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEeeeccCchhhHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEeCC
Confidence 3456777888999999999999999999999999999999999999999999999999999999999953
No 5
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.95 E-value=1.5e-27 Score=240.32 Aligned_cols=211 Identities=17% Similarity=0.203 Sum_probs=160.7
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIAL 83 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~~ 83 (355)
+++++.|+++|+||+..++.... +. ..++|.+..++|+++|+|++++++++.+++.++++
T Consensus 198 ~~~~~~p~a~el~d~~~~~~~~~------------------~~--~~~~p~~~~~~l~v~~~g~~~~~~~~~~~~~~~~~ 257 (413)
T TIGR00387 198 IAAGIIPAGMEFLDNLSIKAVED------------------IS--GIGLPKDAGAILLVEIDGVHEAVERDEEKIEQICR 257 (413)
T ss_pred HhcCCCcEEEEccCHHHHHHHHH------------------hc--CCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHH
Confidence 56899999999999999875321 11 12455556789999999998889999999999999
Q ss_pred HcCCCCC----chhHhHhHHHhhh-hHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEe
Q psy4129 84 KFGGIPA----GETNGMRGYMLTF-VIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISC 158 (355)
Q Consensus 84 ~~g~~~~----~~~~~~~~~~~R~-~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 158 (355)
++|+... +++...++|..|+ ..+++++.. +. ..++|++|||++++++++.+++.++ +++++ ++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~--~~--~~~~d~~vp~~~l~~~~~~~~~~~~----~~~~~----~~ 325 (413)
T TIGR00387 258 KNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS--PL--YLIEDGTVPRSKLPEALRGIADIAR----KYDFT----IA 325 (413)
T ss_pred hCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC--CC--cceeEEecCHHHHHHHHHHHHHHHH----HcCCe----EE
Confidence 9887543 3445667888876 556666532 22 2357999999999999999988764 67755 34
Q ss_pred EeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCC
Q psy4129 159 RVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKD 238 (355)
Q Consensus 159 h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~ 238 (355)
++||++|+. + |+.+.++. .+++
T Consensus 326 ~~gH~g~g~--l-------------------------------------------------------h~~~~~~~-~~~~ 347 (413)
T TIGR00387 326 NFGHAGDGN--L-------------------------------------------------------HPTILTDP-EDKG 347 (413)
T ss_pred EEEEecCCc--c-------------------------------------------------------ccccCCCC-CCHH
Confidence 566665542 1 11122221 1123
Q ss_pred ccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCC
Q psy4129 239 PIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGG 304 (355)
Q Consensus 239 ~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg 304 (355)
+.+++.++.+.+.+.+.++||++|+|||+|..|++|+..++++..+++|++||++|||++||||||
T Consensus 348 ~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 348 EMERVEEAGGEIFELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHHHHHHHHHHHHcCcCcCCCCcC
Confidence 345667788899999999999999999999999999999999989999999999999999999997
No 6
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=99.82 E-value=1.9e-20 Score=195.09 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcC--CeeEEecccCccc
Q psy4129 194 CARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACG--GSISHHHGVGKLR 271 (355)
Q Consensus 194 ~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G--GtisghHGvG~~h 271 (355)
..++++|++|+++-+...... +.-..+-.++ .-+...+.++.+.+.+.+.++| ..+.+|.|+|+.|
T Consensus 403 ~e~~~lW~~R~~~~~~~~~~~-----~~~~~~~~Dv-------aVP~s~L~e~i~~~~~~~~~~~~~~~~~gHaGdGnlH 470 (555)
T PLN02805 403 EAKKELWKIRKEALWACFAME-----PKYEAMITDV-------CVPLSHLAELISRSKKELDASPLVCTVIAHAGDGNFH 470 (555)
T ss_pred HHHHHHHHHHHHHHHHHhhcC-----CCCceeEEEE-------EEEHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCcEE
Confidence 457889999999877533211 1111222333 3356778888888888888888 5677999999999
Q ss_pred cccccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCCcc
Q psy4129 272 SHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351 (355)
Q Consensus 272 ~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki~ 351 (355)
...+.+...+++.+..+++.+.+ -+.++..||++|+|||||..|++|++.++++..+++|++||++|||+|||||||++
T Consensus 471 ~~i~~~~~~~~~~~~~~~~~~~i-~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~ 549 (555)
T PLN02805 471 TIILFDPSQEDQRREAERLNHFM-VHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLI 549 (555)
T ss_pred EEeccCCCCHHHHHHHHHHHHHH-HHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCcee
Confidence 98776544445556666666655 46788999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy4129 352 RSHL 355 (355)
Q Consensus 352 ~~~~ 355 (355)
|+|.
T Consensus 550 ~~~~ 553 (555)
T PLN02805 550 PPHV 553 (555)
T ss_pred Cccc
Confidence 9883
No 7
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=99.81 E-value=1.7e-20 Score=172.33 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=110.8
Q ss_pred HHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcC--CeeEEecccCccccc
Q psy4129 196 RDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACG--GSISHHHGVGKLRSH 273 (355)
Q Consensus 196 ~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G--GtisghHGvG~~h~~ 273 (355)
.+.+|++|+++-+.... + -....+..+.+.+ .-+.+.+.++.+.+.+.+.+++ .++++|-|.|+.|..
T Consensus 103 ~~~~W~~R~~~~~~~~~-~--~~~~~~~~~~~dv-------~vp~~~l~~~~~~~~~~~~~~~~~~~~~gH~~~g~~h~~ 172 (248)
T PF02913_consen 103 QERLWAIRRAIMPYLRD-A--AGRAGPVWDTEDV-------AVPPSRLPEFLREIRALLREYGLEVCHFGHAGDGNLHLY 172 (248)
T ss_dssp TSTHHHHHHHHCCGGGC-S--HCTTEEEEEEEEE-------ESCHHHHHHHHHHHHHHHHHCTEEEEEEEEEEECEEEEE
T ss_pred HHhhhhhhhhhcccccc-c--ccccCCceeeeee-------cccchhhhhHHHhhhhhhhhccccccceEEccCCeEEEE
Confidence 35899999999982110 0 0011222223333 3467788888999999999999 999999999999998
Q ss_pred cccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCCc
Q psy4129 274 WYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNL 350 (355)
Q Consensus 274 ~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki 350 (355)
++.+...+++.+.++++.+.+ -+.++..||++++|||+|..|.+|+.++++++.+++|++||++|||+||||||||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~ilNPGki 248 (248)
T PF02913_consen 173 ILFDPRDPEEPERAEALWDEL-YELVLELGGSISAEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGILNPGKI 248 (248)
T ss_dssp EEEETTSHHHHHHHHHHHHHH-HHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-BSTTG-
T ss_pred eecccchHHHHHHHHHHHHHH-HHHHHhcccccccccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCCCCCCC
Confidence 887665566666666665554 4778899999999999999999999999999999999999999999999999996
No 8
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.71 E-value=1.6e-17 Score=167.72 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=107.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcC--CeeEEecccCccc
Q psy4129 194 CARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACG--GSISHHHGVGKLR 271 (355)
Q Consensus 194 ~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G--GtisghHGvG~~h 271 (355)
...+++|+.|++.-+..-. . .. ..+-.++ .-++....++.+.+.+.+.++| ..+++|.|.|+.|
T Consensus 271 ~~~~~~W~~r~~~~~~~~~--~----~~-~~~~~d~-------~vp~~~l~~~~~~~~~~~~~~~~~~~~~gH~g~g~lh 336 (413)
T TIGR00387 271 EERALLWAGRRNAFKAASK--L----SP-LYLIEDG-------TVPRSKLPEALRGIADIARKYDFTIANFGHAGDGNLH 336 (413)
T ss_pred HHHHHHHHHHHHhHHHHHh--h----CC-CcceeEE-------ecCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccc
Confidence 4578899999988775221 0 00 0111122 3456777788888888888887 4678999999999
Q ss_pred cccccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCC
Q psy4129 272 SHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGN 349 (355)
Q Consensus 272 ~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGk 349 (355)
...+.+...+++.+.++++.+.+ -+.+.+.||++|+|||+|..|++|+.+++++..+++|++||++|||+|||||||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gG~is~eHG~G~~r~~~~~~~~~~~~~~~~~~iK~~fDP~~ilNPGk 413 (413)
T TIGR00387 337 PTILTDPEDKGEMERVEEAGGEI-FELAIELGGTISGEHGIGVVKAEFMPYKFNEKELETMRAIKKAFDPDNILNPGK 413 (413)
T ss_pred cccCCCCCCHHHHHHHHHHHHHH-HHHHHHcCCEEEEeccCcHhHHHHHHHhcCHHHHHHHHHHHHHcCcCcCCCCcC
Confidence 87765433344555555555544 367789999999999999999999999999999999999999999999999997
No 9
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=99.71 E-value=2e-17 Score=170.85 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=110.1
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcC--CeeEEecccCccc
Q psy4129 194 CARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACG--GSISHHHGVGKLR 271 (355)
Q Consensus 194 ~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G--GtisghHGvG~~h 271 (355)
..++++|+.|+++.|.... ... . ++... ..-+...+.++.+.+.+...+++ -++.+|.|.|+.|
T Consensus 328 ~~~~~~W~~R~~~~~~~~~--~~~-----~--~~~~d-----v~vP~~~l~~~~~~~~~~~~~~~~~~~~~gH~GdGn~H 393 (499)
T PRK11230 328 AERVRFWAGRKNAFPAVGR--ISP-----D--YYCMD-----GTIPRRELPGVLEGIARLSQQYGLRVANVFHAGDGNMH 393 (499)
T ss_pred HHHHHHHHHHHhhHHHHHh--hCC-----C--eeEEe-----ecCChHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCcce
Confidence 3467899999998875331 111 1 22221 13456777778888888888887 5567799999999
Q ss_pred cccccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCCcc
Q psy4129 272 SHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351 (355)
Q Consensus 272 ~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki~ 351 (355)
...+.+...+.+.+..+++.+.+ -+.+.+.||++|+|||+|+.|++|+..+++++.+++|++||++|||+|||||||++
T Consensus 394 ~~i~~~~~~~~~~~~~~~~~~~l-~~~~~~~GG~is~EHGiG~~k~~~l~~~~g~~~~~~m~~IK~~fDP~~iLNPGk~~ 472 (499)
T PRK11230 394 PLILFDANEPGELERAEALGGKI-LELCVEVGGSITGEHGVGREKINQMCAQFNSDEITLFHAVKAAFDPDGLLNPGKNI 472 (499)
T ss_pred eeecCCCCCHHHHHHHHHHHHHH-HHHHHHcCCeEeeeccCchhhHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCeEe
Confidence 98775433334445555555443 36778999999999999999999999999999999999999999999999999998
Q ss_pred C
Q psy4129 352 R 352 (355)
Q Consensus 352 ~ 352 (355)
+
T Consensus 473 ~ 473 (499)
T PRK11230 473 P 473 (499)
T ss_pred C
Confidence 6
No 10
>KOG1232|consensus
Probab=99.69 E-value=2.4e-16 Score=154.26 Aligned_cols=208 Identities=18% Similarity=0.171 Sum_probs=141.8
Q ss_pred CccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhccCCC--CCCceEEEEEEEcCHHH-HHHHHHHHHHHHHHc
Q psy4129 9 QPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFS--VDEMCVTTLLFEGDPED-VKKNQAKIYSIALKF 85 (355)
Q Consensus 9 ~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~G~~~~-v~~~~~~i~~i~~~~ 85 (355)
+.|+.||||+..+.+... |+ +...+| .+..-.+++|..|+.++ =++.+....+=|.+-
T Consensus 296 ILSafElmD~~s~~~~~~------------------~l-~~l~~pl~~~~pFyiLiETsGSn~dhD~eKl~afl~d~lek 356 (511)
T KOG1232|consen 296 ILSAFELMDNASMELVLE------------------YL-KDLHFPLEDEHPFYILIETSGSNKDHDEEKLTAFLEDCLEK 356 (511)
T ss_pred HHHHHHhhcchHHHHHHH------------------Hh-ccCCCCccCCCceEEEEEecCCCccccHHHHHHHHHHhhhh
Confidence 568899999999986331 32 111233 22334789999997543 233334333333333
Q ss_pred CCCC----C-chhHhHhHHHhhhhHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEeEe
Q psy4129 86 GGIP----A-GETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRV 160 (355)
Q Consensus 86 g~~~----~-~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~h~ 160 (355)
|-+. . ++.+.+.+|..|...|-.-. ..| .+.--|++.|+..+-+++..+++++.. .++- .-.|-.
T Consensus 357 ~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~---~~g-~vyKyDvSLpL~d~Y~lvn~~~eRl~~----~~l~--~d~~gy 426 (511)
T KOG1232|consen 357 GLISDGVLAQDEAEAQKLWKIRESIPEALQ---KAG-GVYKYDVSLPLEDLYNLVNVMKERLGE----AALV--GDIVGY 426 (511)
T ss_pred cccccceecCCHHHHHHHHHHHhccHHHHH---hcC-CEEEeeccccHHHHHHHHHHHHHhhhh----hhhh--hccccc
Confidence 4333 1 45667789999987764322 223 245679999999999999999988753 3321 112456
Q ss_pred eeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCcc
Q psy4129 161 TQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPI 240 (355)
Q Consensus 161 gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~ 240 (355)
||+||+.. |.+ +..+ +-..
T Consensus 427 GHlGDgNl--------------------------------------HLN-------------------ia~~----efn~ 445 (511)
T KOG1232|consen 427 GHLGDGNL--------------------------------------HLN-------------------IAVR----EFNK 445 (511)
T ss_pred ccccCCce--------------------------------------eEe-------------------eeHH----HHhH
Confidence 77777632 221 2221 1112
Q ss_pred chHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcc
Q psy4129 241 GSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSI 306 (355)
Q Consensus 241 ~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~i 306 (355)
+..+.+.-.+++.+.+++|+||+|||+|..|.+|+.-..+|+++..|+.+|+.|||++||||-|.+
T Consensus 446 ~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DPngILnPYK~i 511 (511)
T KOG1232|consen 446 EIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDPNGILNPYKYI 511 (511)
T ss_pred HHHHhhhhHHHHHHHhcCCceeccccccccccCccccCCCHHHHHHHHHHHhhcCCcccCCccccC
Confidence 333445568899999999999999999999999999999999999999999999999999998864
No 11
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.63 E-value=1.6e-14 Score=145.75 Aligned_cols=213 Identities=15% Similarity=0.248 Sum_probs=145.4
Q ss_pred cCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhccCCCCCCceEEEEEEEcCH-HHHHHHHHHHHHHHHH
Q psy4129 6 QRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDP-EDVKKNQAKIYSIALK 84 (355)
Q Consensus 6 ~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~-~~v~~~~~~i~~i~~~ 84 (355)
.++.|+++|+||.. +..... +... ..++....+.++++++|.. ..+......+.+++.+
T Consensus 237 ~~~~~~~~e~~~~~-~~~~~~------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (459)
T COG0277 237 LGVIPAALEFMDRP-IKAAEA------------------YLGG-GALPLEAPARLLVEVEGSDEAAVDEALEALGELLLE 296 (459)
T ss_pred cCCCceeeeecchh-HHHHHH------------------hccc-cCCCCCCceEEEEEEcCCcHHHHHHHHHHHHHHHHh
Confidence 45789999999997 322111 1100 1233333367999999976 7788999999999998
Q ss_pred cC-CCC--C--chhHhHhHHHhhh-hHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcC--Ccccee
Q psy4129 85 FG-GIP--A--GETNGMRGYMLTF-VIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMN--VEHYLI 156 (355)
Q Consensus 85 ~g-~~~--~--~~~~~~~~~~~R~-~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~--~~~~~~ 156 (355)
.+ ... . +.+...++|..|. ..+...... +. ....|++||+++++++++.+.+.+. +.+ +.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~--~~~~d~~vp~~~~~~~~~~~~~~~~----~~~~~~~---- 364 (459)
T COG0277 297 HGLARDLVVAQDLAEAARLWLARKGALAAAGALG--PG--VIQEDVVVPLEALPEFLREILALLD----KAGLALR---- 364 (459)
T ss_pred cCCceeEEEeCCHHHHHHHHHHHHHHHHHHHhhC--CC--ccccceeeeHHHHHHHHHHHHHHHH----hcCCCce----
Confidence 88 222 1 2333445566654 445444322 22 3457999999999999999988775 444 32
Q ss_pred EeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCC
Q psy4129 157 SCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQ 236 (355)
Q Consensus 157 ~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~ 236 (355)
...++|.+|+. +++.+.++....
T Consensus 365 ~~~~~~~~dg~---------------------------------------------------------~~~~~~~~~~~~ 387 (459)
T COG0277 365 VALFGHAGDGN---------------------------------------------------------LHLNILYDVGDE 387 (459)
T ss_pred eeeecccCCCc---------------------------------------------------------ceeeeccCCCcc
Confidence 23345544432 222222221101
Q ss_pred CCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcccc
Q psy4129 237 KDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISH 308 (355)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~ 308 (355)
.+..+...++.+.+.+.+.++||++++|||+|..+..|+..+.+ +.++.|+++|++|||+++||||+.+..
T Consensus 388 ~~~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 388 AEELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 22344566777888999999999999999999999999999887 678999999999999999999998753
No 12
>KOG1232|consensus
Probab=99.48 E-value=6.3e-14 Score=137.51 Aligned_cols=136 Identities=19% Similarity=0.278 Sum_probs=105.8
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcC--C--eeEEecccCc
Q psy4129 194 CARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACG--G--SISHHHGVGK 269 (355)
Q Consensus 194 ~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G--G--tisghHGvG~ 269 (355)
....++|++|+-++.... ..|.+-..++ .-+.+.+=.+...+.+.+.+++ | +-+||-|+|+
T Consensus 369 ~~~~~lW~~Re~ip~a~~--------~~g~vyKyDv-------SLpL~d~Y~lvn~~~eRl~~~~l~~d~~gyGHlGDgN 433 (511)
T KOG1232|consen 369 AEAQKLWKIRESIPEALQ--------KAGGVYKYDV-------SLPLEDLYNLVNVMKERLGEAALVGDIVGYGHLGDGN 433 (511)
T ss_pred HHHHHHHHHHhccHHHHH--------hcCCEEEeec-------cccHHHHHHHHHHHHHhhhhhhhhhcccccccccCCc
Confidence 457899999999998744 4554444444 3345555566666776666644 3 5589999999
Q ss_pred cccccccccCChhHHHHHHHHHhhcCC---CccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCC
Q psy4129 270 LRSHWYPKQVSSVGVELYQSTKRQLDP---KNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFA 346 (355)
Q Consensus 270 ~h~~~l~~~~g~~~~~~mr~iK~a~DP---~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilN 346 (355)
.|-+.-.+++.. +|.+.+.| +.+-..+|+||+|||+|.+|.+|+....+|+.+.+|+.||+.|||+||||
T Consensus 434 lHLNia~~efn~-------~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~lmk~lKn~~DPngILn 506 (511)
T KOG1232|consen 434 LHLNIAVREFNK-------EIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILLMKDLKNLFDPNGILN 506 (511)
T ss_pred eeEeeeHHHHhH-------HHHHhhhhHHHHHHHhcCCceeccccccccccCccccCCCHHHHHHHHHHHhhcCCcccCC
Confidence 998877766543 33334444 77888999999999999999999999999999999999999999999999
Q ss_pred CCCcc
Q psy4129 347 NGNLL 351 (355)
Q Consensus 347 PGki~ 351 (355)
|-|.+
T Consensus 507 PYK~i 511 (511)
T KOG1232|consen 507 PYKYI 511 (511)
T ss_pred ccccC
Confidence 99864
No 13
>KOG1231|consensus
Probab=99.36 E-value=8.2e-14 Score=139.25 Aligned_cols=220 Identities=12% Similarity=0.069 Sum_probs=152.8
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhh-hhccCCCCCCceEEEEEEEc-CHHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYI-TKIKGFSVDEMCVTTLLFEG-DPEDVKKNQAKIYSI 81 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~G-~~~~v~~~~~~i~~i 81 (355)
+++++..+.++++|..+++..++.... .|. .-.|-|+..+.++++.|++| +++.+...-..+..+
T Consensus 267 l~~n~r~s~f~l~D~~~i~~~~~~~~~-------------~yclev~ky~d~~e~pti~~e~~~l~~~l~~~~~~~~~~~ 333 (505)
T KOG1231|consen 267 LQSNIRVSRFELLDEVQIAAINSDHST-------------NYCLEVAKYYDLTEAPTLFQEIGGLSEKLNYAPTFIVEQD 333 (505)
T ss_pred ccccceeeccccCcHHHHHHHHhcCCe-------------eeeeehhhccCcccCchHHHHHhccchhhhccchhhhhhh
Confidence 467788888999999999854421111 011 00123456788899999999 566777777888888
Q ss_pred HHHcCCCC-C--ch--hHhHhHHHhhhhHHHHHHhhcccC-----ceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCC
Q psy4129 82 ALKFGGIP-A--GE--TNGMRGYMLTFVIAYIRDLALDYH-----ILAESFETSVPWDKAILLCTNVKQRVARECKVMNV 151 (355)
Q Consensus 82 ~~~~g~~~-~--~~--~~~~~~~~~R~~~~~~~~~~~~~~-----~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~ 151 (355)
|+.+...+ + ++ .....+|+.|.- |+.-+. ..+ .-..+.|++||.|+.|.++-.+++.+. ..+.
T Consensus 334 v~y~~fldrv~~ae~klrskgLWevphp--WlnL~v-pks~i~~fa~gv~~dIl~~~s~g~~liyptnk~~k----w~~~ 406 (505)
T KOG1231|consen 334 VQYHDFLDRVHFAEDKLRSKGLWEVPHP--WLNLAV-PKSRISDFARGVFTDILVPNSSGPVLIYPTNKDLK----WSNR 406 (505)
T ss_pred hHHHHhhhHhhhcccchhhcccccCCCc--hheeec-ccccchhhhhhhccceeeccCCCceEEeccccCcc----hhhh
Confidence 88877665 3 22 334458899862 432221 111 123568999999999999999977542 2332
Q ss_pred ccceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeec
Q psy4129 152 EHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGY 231 (355)
Q Consensus 152 ~~~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~ 231 (355)
. .+-++|++|+- ||. +..+
T Consensus 407 ~----sav~ph~~e~v----Fy~-----------------------------------------------------v~~l 425 (505)
T KOG1231|consen 407 L----SAVTPHAGEGV----FYL-----------------------------------------------------VILL 425 (505)
T ss_pred h----ccccccCCCce----EEE-----------------------------------------------------EEEe
Confidence 2 23356666641 222 2222
Q ss_pred ccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCccc
Q psy4129 232 NFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSIS 307 (355)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is 307 (355)
+. ..+++.+..++..+.+.+.+.+. |+++++||+|..++.|+.++.|+.-.+.|+ +|.++||+.|||||+.|.
T Consensus 426 ~s-~~~~~~e~~~~~n~riv~fc~~a-g~~~keyl~~~~~~e~w~~hfG~~w~~f~~-~K~~~DPk~Il~PGq~If 498 (505)
T KOG1231|consen 426 RS-SGKEEHEELEQLNDRIVKFCLAA-GTCTKEYLPHYGKREYWVEHFGEKWVDFMR-IKKAYDPKRILNPGQRIF 498 (505)
T ss_pred cC-CCchhHHHHHHHHHHHHHHHHHc-CcChhhhcCCcccHHHHHHHhChhHHHHHH-HHhhcCHHHhcCCccccc
Confidence 21 12455667777778888888888 999999999999999999999998778888 999999999999999875
No 14
>KOG1233|consensus
Probab=99.35 E-value=4.3e-13 Score=132.02 Aligned_cols=100 Identities=52% Similarity=0.975 Sum_probs=83.4
Q ss_pred hhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHH
Q psy4129 207 EHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVEL 286 (355)
Q Consensus 207 ~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~ 286 (355)
||....|++||+|+.|+|+||+|.++.++..++++.++++
T Consensus 514 ~~~~s~CRVTQtYDAGACiYFYFgFn~rg~~dplevfe~i---------------------------------------- 553 (613)
T KOG1233|consen 514 HPVLSNCRVTQTYDAGACIYFYFGFNARGLKDPLEVFERI---------------------------------------- 553 (613)
T ss_pred cccccceeEEEEecCceEEEEEEeeccccCCchHHHHHHH----------------------------------------
Confidence 4555559999999999999999999876555555544433
Q ss_pred HHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCCcc
Q psy4129 287 YQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351 (355)
Q Consensus 287 mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki~ 351 (355)
..+. -+.|+..||++|++||+|..|.+|+..-.++.++.+++++|+.+||+|||.-++++
T Consensus 554 ----E~aA-RdEIlacGGSlSHHHGVGKiRkqW~~~~~~~vG~~llka~K~~lDP~NIFa~~NLl 613 (613)
T KOG1233|consen 554 ----ETAA-RDEILACGGSLSHHHGVGKIRKQWMLTTNGAVGIALLKAIKSELDPANIFASANLL 613 (613)
T ss_pred ----HHHh-HHHHHhcCCcccccccchHHHHHHHHhhhhhHhHHHHHHHHHhcChhhhccccccC
Confidence 3222 36678899999999999999999999999999999999999999999999988764
No 15
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.22 E-value=2.3e-11 Score=122.92 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=103.0
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHc----CCeeEEecccCc
Q psy4129 194 CARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIAC----GGSISHHHGVGK 269 (355)
Q Consensus 194 ~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----GGtisghHGvG~ 269 (355)
....++|..|+.+...... +..+ .+...+ .-+.+...++...+.+.+.+. ....++|.|.|+
T Consensus 310 ~~~~~~~~~r~~~~~~~~~------~~~~-~~~~d~-------~vp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~ 375 (459)
T COG0277 310 AEAARLWLARKGALAAAGA------LGPG-VIQEDV-------VVPLEALPEFLREILALLDKAGLALRVALFGHAGDGN 375 (459)
T ss_pred HHHHHHHHHHHHHHHHHHh------hCCC-ccccce-------eeeHHHHHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 3478999999988876431 1111 111111 233455666666777777664 479999999999
Q ss_pred cccccccccCC-hhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCC
Q psy4129 270 LRSHWYPKQVS-SVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348 (355)
Q Consensus 270 ~h~~~l~~~~g-~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPG 348 (355)
.|..+...... ....+...++...+ -..+...||.+++|||+|..|.+|+..+.+ +.+++|+++|++|||+||||||
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~-~~~~~~~~~k~~~DP~~i~npg 453 (459)
T COG0277 376 LHLNILYDVGDEAEELARAEALNEAI-EALAVELGGSISGEHGIGRTKAEFLELEPG-EAWALLRAIKRAFDPNGIFNPG 453 (459)
T ss_pred ceeeeccCCCccHHHHHHHHHHHHHH-HHHHHHhCCeeEEecccchhhHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCC
Confidence 99877655431 22233333333333 255568899999999999999999999988 7899999999999999999999
Q ss_pred CccCC
Q psy4129 349 NLLRS 353 (355)
Q Consensus 349 ki~~~ 353 (355)
|+++.
T Consensus 454 ~~~~~ 458 (459)
T COG0277 454 KLFRL 458 (459)
T ss_pred ccCCC
Confidence 99875
No 16
>KOG1231|consensus
Probab=98.70 E-value=4.7e-09 Score=105.51 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=76.5
Q ss_pred CeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHh
Q psy4129 259 GSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQ 338 (355)
Q Consensus 259 GtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~ 338 (355)
+++++|.|.|+.|.-.+.+..++++.+.+.++-+.+ -+..++. |+..+|||+|..|++|+..++|+.-.++|+ +|.+
T Consensus 408 sav~ph~~e~vFy~v~~l~s~~~~~~e~~~~~n~ri-v~fc~~a-g~~~keyl~~~~~~e~w~~hfG~~w~~f~~-~K~~ 484 (505)
T KOG1231|consen 408 SAVTPHAGEGVFYLVILLRSSGKEEHEELEQLNDRI-VKFCLAA-GTCTKEYLPHYGKREYWVEHFGEKWVDFMR-IKKA 484 (505)
T ss_pred ccccccCCCceEEEEEEecCCCchhHHHHHHHHHHH-HHHHHHc-CcChhhhcCCcccHHHHHHHhChhHHHHHH-HHhh
Confidence 678899999999988777767776666554443322 2445566 999999999999999999999999999999 9999
Q ss_pred cCCCCCCCCCCccCC
Q psy4129 339 LDPKNIFANGNLLRS 353 (355)
Q Consensus 339 fDP~gilNPGki~~~ 353 (355)
|||+.|||||+.+++
T Consensus 485 ~DPk~Il~PGq~Ifq 499 (505)
T KOG1231|consen 485 YDPKRILNPGQRIFQ 499 (505)
T ss_pred cCHHHhcCCcccccc
Confidence 999999999999875
No 17
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=97.88 E-value=1.6e-05 Score=79.42 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=38.8
Q ss_pred CCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCCccCC
Q psy4129 302 NGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLLRS 353 (355)
Q Consensus 302 pGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki~~~ 353 (355)
.||..+..++....+..|-+ +++..+++|++||++|||++|||||++...
T Consensus 302 ~gG~~tl~~a~~~~~~~~~~--~~~~~~~l~~~lK~~fDP~~ilnpgr~~~~ 351 (352)
T PRK11282 302 AGGHATLFRAGDRAGPVFHP--LPAPLLRIHRRLKQAFDPAGIFNPGRLYAE 351 (352)
T ss_pred cCCEEEEEECCcccccCCCC--CCHHHHHHHHHHHHhcCcccCCCCCcCCCC
Confidence 47887777776665544433 356668999999999999999999999763
No 18
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=95.60 E-value=0.027 Score=56.48 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcccc
Q psy4129 248 HCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISH 308 (355)
Q Consensus 248 ~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~ 308 (355)
+.+++.+..+||..+--.+-...+ ..+.. ..+....+|+++|+.|||++|||||...+.
T Consensus 293 ~~~r~~~~~~gG~~tl~~a~~~~~-~~~~~-~~~~~~~l~~~lK~~fDP~~ilnpgr~~~~ 351 (352)
T PRK11282 293 AAIRAAAAAAGGHATLFRAGDRAG-PVFHP-LPAPLLRIHRRLKQAFDPAGIFNPGRLYAE 351 (352)
T ss_pred HHHHHHHHhcCCEEEEEECCcccc-cCCCC-CCHHHHHHHHHHHHhcCcccCCCCCcCCCC
Confidence 467888899999888876644432 21221 333447899999999999999999987653
No 19
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=94.20 E-value=0.59 Score=45.36 Aligned_cols=51 Identities=27% Similarity=0.355 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCC
Q psy4129 243 YDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303 (355)
Q Consensus 243 ~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpG 303 (355)
..+++..+-+...+-|+-.-+||.||.+-. .-..+++.-+.+||.|.+|||
T Consensus 231 ~~alk~~ml~lLd~RGAeYPAEHNVGHLY~----------Akp~L~~fY~~lDPtNsfNPG 281 (291)
T PF09330_consen 231 PHALKHEMLALLDARGAEYPAEHNVGHLYH----------AKPALKAFYRKLDPTNSFNPG 281 (291)
T ss_dssp HHHHHHHHHHHHHHCT-BSSSSS--TTTS-------------HHHHHHHHHH-TT--BSTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcccCCCcccc----------CCHHHHHHHHhcCCCcCCCCC
Confidence 456778888888999999999999998721 113466677788999999997
No 20
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=93.11 E-value=3.8 Score=43.58 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=73.1
Q ss_pred hhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChh
Q psy4129 203 VMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSV 282 (355)
Q Consensus 203 ~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~ 282 (355)
|..+-...+--|.-|.-.-+-.+-.++..+++ +.+.++.+-..+.+.+.. -..+||-..=..|..|.... |-.
T Consensus 427 rf~~a~aa~ry~~~~~~~~~~i~~ldial~rn----~~~w~e~lp~~~~~~~~~--~~yyghf~chv~hqdyi~kk-g~d 499 (564)
T PRK11183 427 RFAAAGAAIRYRAVHRDEVEDILALDIALRRN----DRDWFEHLPPEIDDQLVH--KLYYGHFFCHVFHQDYIVKK-GVD 499 (564)
T ss_pred HHHhhhhHHHHHHhhhccccceeeEEeeecCC----ccchHHhCCHHHhhhhhh--heeccccceecchhhhhhcc-CCC
Confidence 44444444443444444556678889988753 233333333333221111 13567777778888877652 222
Q ss_pred HHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCC
Q psy4129 283 GVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGN 349 (355)
Q Consensus 283 ~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGk 349 (355)
..++=+++.+.+|- -|.-.++||.+|-+=.. -.-+++.=+.+||-|-||||-
T Consensus 500 ~~~~~~~m~~~l~~-----rga~ypaehnvghly~a----------~~~l~~~y~~~dptn~~npgi 551 (564)
T PRK11183 500 VHALKHEMLELLDA-----RGAEYPAEHNVGHLYKA----------KPALKKFYRELDPTNSFNPGI 551 (564)
T ss_pred HHHHHHHHHHHHHh-----cCCcCCcccccCccccC----------ChHHHHHHHhcCCccCCCCcc
Confidence 23333455555553 48889999999973211 135667778899999999983
No 21
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=91.03 E-value=2.2 Score=41.05 Aligned_cols=56 Identities=20% Similarity=0.203 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHH-HHHcCCeeEEecccCcccccc---ccccCChhHHHHHHHHHhhcCCCcccc
Q psy4129 240 IGSYDYIEHCARDE-IIACGGSISHHHGVGKLRSHW---YPKQVSSVGVELYQSTKRQLDPKNVFA 301 (355)
Q Consensus 240 ~~~~~~~~~~v~~~-~~~~GGtisghHGvG~~h~~~---l~~~~g~~~~~~mr~iK~a~DP~~IlN 301 (355)
+..++++.+++.+. +.++||-. |.| +.|.-- +..-+ | ..+-+.++++.+||++++-
T Consensus 136 pr~~~~~f~eiEqial~kygGRP--HWG--K~h~l~~~~l~~lY-P-r~~dFlavR~~lDP~G~F~ 195 (257)
T PLN00107 136 PRLHEDAMEEIEQMAILKYGALP--HWG--KNRNAAFDGAIAKY-K-KAGEFLKVKERLDPEGLFS 195 (257)
T ss_pred cccHHHHHHHHHHHHHHhcCCcC--Cch--hccCCCHHHHHHHC-c-CHHHHHHHHHHhCCCCccC
Confidence 45778888899877 88999866 654 333211 11111 1 2456789999999988654
No 22
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=90.58 E-value=1.4 Score=45.14 Aligned_cols=117 Identities=16% Similarity=0.203 Sum_probs=72.7
Q ss_pred eeeeeeeecchHHHHHHHHHHHHHHHHHhcCCcc-ceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHH
Q psy4129 120 ESFETSVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDE 198 (355)
Q Consensus 120 ~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~ 198 (355)
.-.|.+||.++.++.++++++.+++ .+.+. ..+-.+++-. |+
T Consensus 289 ~q~e~~iP~~~~~~al~~i~~~i~~----~~~~~~~pve~R~~~a-d~-------------------------------- 331 (419)
T TIGR01679 289 NEMEYHLPRENGRKALQEVIDLVER----RSPPVMFPIEVRFSAP-DD-------------------------------- 331 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHh----cCCCccceEEEEEecC-CC--------------------------------
Confidence 3469999999999999999998863 34331 1233344310 00
Q ss_pred HHHHhhhhhhhhhhhccccccc-CCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccc---c
Q psy4129 199 IIACVMNVEHYLISCRVTQTYD-AGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSH---W 274 (355)
Q Consensus 199 ~~~~~~n~~~~~~~~h~sh~y~-~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~---~ 274 (355)
+-+|.+|+ +++.|.+.+... ..+.++.+++.+.+.++||-. |-| +.|.- -
T Consensus 332 --------------~~LS~~~~r~~~~ia~~~~~~--------~~~~~~~~~~e~i~~~~gGRp--Hwg--K~~~l~~~~ 385 (419)
T TIGR01679 332 --------------SWLSPFYGRPTCSIAVHQYAG--------MDFESYFRAVEPIFRRYAGRP--HWG--KRHYLTAAT 385 (419)
T ss_pred --------------cccCCCCCCCcEEEEEEEcCC--------CCHHHHHHHHHHHHHHcCCCC--Cch--hccCCCHHH
Confidence 12455444 777777765421 246778888899999999976 433 33311 1
Q ss_pred ccccCChhHHHHHHHHHhhcCCCcccc
Q psy4129 275 YPKQVSSVGVELYQSTKRQLDPKNVFA 301 (355)
Q Consensus 275 l~~~~g~~~~~~mr~iK~a~DP~~IlN 301 (355)
+..-+ | .++.+.++++.+||++++.
T Consensus 386 l~~~Y-P-~~~~F~~~r~~~DP~g~F~ 410 (419)
T TIGR01679 386 LRERY-P-RWDDFAAVRDDLDPDRRFL 410 (419)
T ss_pred HHHHC-c-CHHHHHHHHHHhCCCCccC
Confidence 11112 2 2566889999999987654
No 23
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=90.57 E-value=1.3 Score=41.78 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=64.2
Q ss_pred eeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCcc-ceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHH
Q psy4129 119 AESFETSVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARD 197 (355)
Q Consensus 119 ~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~ 197 (355)
....|.+||+++.+++++++++.++++ .+... ..+..+++. + +|
T Consensus 125 ~~~~E~~iP~~~~~~~l~~l~~~~~~~---~~~~~~~pie~R~~~----~--------------d~-------------- 169 (259)
T PF04030_consen 125 FWEMEYAIPIENAPEALRELRALIDKE---GGFPVHFPIEVRFVK----A--------------DD-------------- 169 (259)
T ss_dssp --EEEEEEEGGGHHHHHHHHHHTHHHH---G--GGEEEEEEEEE--------------------B---------------
T ss_pred ceeEEEeeCHHHHHHHHHHHHHHHHHc---ccCceeEEEEEEEEC----C--------------Ch--------------
Confidence 345799999999999999999988742 11321 123344441 1 01
Q ss_pred HHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccc---c
Q psy4129 198 EIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSH---W 274 (355)
Q Consensus 198 ~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~---~ 274 (355)
+-+|.+|... ++++.+.... .......+++..+.+.+.+.++||-. |-| ..+.. -
T Consensus 170 ---------------~~Ls~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~~~e~~~~~~ggRp--HWg--K~~~~~~~~ 227 (259)
T PF04030_consen 170 ---------------AWLSPAYGRD-TCYIEIHMYR--PMGDPVPYEEFFRAFEQILRKYGGRP--HWG--KNHTLTAEQ 227 (259)
T ss_dssp ---------------STT-TTBTS--EEEEEEEE-S---HH---HHHHHHHHHHHHHGGGT-EE---TT--S-----HHH
T ss_pred ---------------hhcCCCCCCC-EEEEEEEEeC--CccccccHHHHHHHHHHHHHHcCCEE--CcC--cCCCCCHHH
Confidence 1235555433 4444443321 11112237777788888899999866 544 33211 1
Q ss_pred ccccCChhHHHHHHHHHhhcCCCcccc
Q psy4129 275 YPKQVSSVGVELYQSTKRQLDPKNVFA 301 (355)
Q Consensus 275 l~~~~g~~~~~~mr~iK~a~DP~~IlN 301 (355)
+...+ | .++.+.++++.+||++++.
T Consensus 228 l~~~Y-p-~~~~F~~~r~~~DP~g~F~ 252 (259)
T PF04030_consen 228 LRKLY-P-RLDDFLAVRKKLDPQGVFL 252 (259)
T ss_dssp HHHT--T-THHHHHHHHHHH-TT-TT-
T ss_pred HHHHC-c-CHHHHHHHHHHhCCCCCCC
Confidence 12223 2 3677889999999998764
No 24
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=89.67 E-value=2.6 Score=44.77 Aligned_cols=51 Identities=27% Similarity=0.390 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCC
Q psy4129 243 YDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303 (355)
Q Consensus 243 ~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpG 303 (355)
..+++..+-+...+-|+-.-+||.||.+-. . + ..+++.-+.+||.|-+|||
T Consensus 500 ~~~~~~~m~~~l~~rga~ypaehnvghly~----a---~---~~l~~~y~~~dptn~~npg 550 (564)
T PRK11183 500 VHALKHEMLELLDARGAEYPAEHNVGHLYK----A---K---PALKKFYRELDPTNSFNPG 550 (564)
T ss_pred HHHHHHHHHHHHHhcCCcCCcccccCcccc----C---C---hHHHHHHHhcCCccCCCCc
Confidence 456677888888899999999999998731 1 1 3466777888999999997
No 25
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=85.51 E-value=1.8 Score=42.25 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=38.0
Q ss_pred ccccccCCceeeEeeecccCC---CCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChh--------H
Q psy4129 215 VTQTYDAGCCIYFYFGYNFMG---QKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSV--------G 283 (355)
Q Consensus 215 ~sh~y~~G~~l~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~--------~ 283 (355)
.|.+-|++...|..-.++... .....+.+.+-.+.+.+.+.+.|..+ +.|++...+++ .
T Consensus 188 ~s~v~Pde~vfylv~lLrsa~P~~~~~~l~~l~~qN~~il~~c~~agi~~----------k~Yl~~~~t~~dW~~HFG~~ 257 (281)
T PF09265_consen 188 MSAVIPDEDVFYLVALLRSADPSDGPDDLERLLEQNRRILEFCRKAGIGG----------KQYLPHYTTQEDWRRHFGPK 257 (281)
T ss_dssp SS----SSSEEEEEEEEE---TTSSCCHHHHHHHHHHHHHHHHHHTT--E----------EESS---SSHHHHHHHHGHH
T ss_pred CcccCCCCCeEEEEEEeCCCCCCCCchhHHHHHHHHHHHHHHHHHcCCce----------EECCCCCCCHHHHHHHhchH
Confidence 445557777777544444321 12233444455567777775544221 33444433322 3
Q ss_pred HHHHHHHHhhcCCCccccCCC
Q psy4129 284 VELYQSTKRQLDPKNVFANGG 304 (355)
Q Consensus 284 ~~~mr~iK~a~DP~~IlNpGg 304 (355)
.+.+.+.|+.+||.+||.||-
T Consensus 258 W~~f~~~K~~yDP~~IL~PGq 278 (281)
T PF09265_consen 258 WERFVERKRRYDPKAILAPGQ 278 (281)
T ss_dssp HHHHHHHHHHH-TT--B-GGG
T ss_pred HHHHHHHHHhCCchhhcCCCC
Confidence 566889999999999999984
No 26
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=82.54 E-value=1.7 Score=42.25 Aligned_cols=138 Identities=17% Similarity=0.158 Sum_probs=72.7
Q ss_pred hhhhHHHHHHH--HHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEeccc
Q psy4129 190 YIEHCARDEII--ACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGV 267 (355)
Q Consensus 190 ~~~~~~~~~~~--~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGv 267 (355)
+.||.++|.-= --|..+-...+--|.-|.-.-+-.+-.+|..++++ .+.++.+-..+.+.+ ..-...||-.+
T Consensus 143 ~feCt~~E~~~A~LhRFaaAgAaiRY~avh~~~vedivaLDiALrRNd----~dW~E~LP~ei~~~i--~~klyyGHF~C 216 (291)
T PF09330_consen 143 FFECTPEEGKKAFLHRFAAAGAAIRYRAVHRKEVEDIVALDIALRRND----RDWFETLPPEIEDQI--VHKLYYGHFFC 216 (291)
T ss_dssp EEE--HHHHHHHHHHHTTHHHHHHHHHHHTCCCEECEEEEEEE-BTT-----S--S----HHHHTTE--EEEEEEEECCC
T ss_pred eEeeCHHHHHHHHHHHHHhhhhhHHHHHhccccccceeeeeeeecCCc----hhhhhhCCHHHHHHH--HHHeeccccch
Confidence 44555544433 34555555555555556556677888999987542 222233333333211 01245788899
Q ss_pred CccccccccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCC
Q psy4129 268 GKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFAN 347 (355)
Q Consensus 268 G~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNP 347 (355)
-..|..|.... |-...++=+++.+.+| .-|.-.++||.+|-+=. +-.-+++.=+.+||-|-|||
T Consensus 217 hVfHQDYivKk-GvD~~alk~~ml~lLd-----~RGAeYPAEHNVGHLY~----------Akp~L~~fY~~lDPtNsfNP 280 (291)
T PF09330_consen 217 HVFHQDYIVKK-GVDPHALKHEMLALLD-----ARGAEYPAEHNVGHLYH----------AKPALKAFYRKLDPTNSFNP 280 (291)
T ss_dssp TEEEEEEEEET-TS-HHHHHHHHHHHHH-----HCT-BSSSSS--TTTS-------------HHHHHHHHHH-TT--BST
T ss_pred hhchhhhhhcc-CCCHHHHHHHHHHHHH-----HhCCCCCcccCCCcccc----------CCHHHHHHHHhcCCCcCCCC
Confidence 99998888762 3222333345555554 35889999999997321 12456777788899999999
Q ss_pred CC
Q psy4129 348 GN 349 (355)
Q Consensus 348 Gk 349 (355)
|-
T Consensus 281 GI 282 (291)
T PF09330_consen 281 GI 282 (291)
T ss_dssp TT
T ss_pred Cc
Confidence 83
No 27
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=81.70 E-value=0.82 Score=32.41 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=20.7
Q ss_pred ccccccCChHHHHHHHHHHHhcCCCCCCCC
Q psy4129 318 HWYPKQVSSVGVELYQSTKRQLDPKNIFAN 347 (355)
Q Consensus 318 ~~l~~~~g~~~~~lm~~iK~~fDP~gilNP 347 (355)
.+....+| +.++=+++||+..||.|+|.-
T Consensus 14 ~~~~~yyg-~n~~rL~~iK~~yDP~n~F~~ 42 (47)
T PF08031_consen 14 DWQEAYYG-ENYDRLRAIKRKYDPDNVFRF 42 (47)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHH-TT-TS-S
T ss_pred HHHHHHhc-hhHHHHHHHHHHhCccceeCC
Confidence 45555566 568999999999999999974
No 28
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=79.98 E-value=1 Score=43.85 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=22.2
Q ss_pred ccccccccccCChHHHHHHHHHHHhcCCCCCCCCCC
Q psy4129 314 KLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGN 349 (355)
Q Consensus 314 ~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGk 349 (355)
....+| ..-+| ..+.-+.+.|+.|||++||.||-
T Consensus 245 ~t~~dW-~~HFG-~~W~~f~~~K~~yDP~~IL~PGq 278 (281)
T PF09265_consen 245 TTQEDW-RRHFG-PKWERFVERKRRYDPKAILAPGQ 278 (281)
T ss_dssp SSHHHH-HHHHG-HHHHHHHHHHHHH-TT--B-GGG
T ss_pred CCHHHH-HHHhc-hHHHHHHHHHHhCCchhhcCCCC
Confidence 334455 33446 46899999999999999999993
No 29
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=79.63 E-value=14 Score=39.40 Aligned_cols=75 Identities=16% Similarity=0.202 Sum_probs=45.3
Q ss_pred cCCceeeEeeecccCCCCCccchHHHHHHHHHHH-HHHcCCeeEEecccCccccc---cccccCChhHHHHHHHHHhhcC
Q psy4129 220 DAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDE-IIACGGSISHHHGVGKLRSH---WYPKQVSSVGVELYQSTKRQLD 295 (355)
Q Consensus 220 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~GGtisghHGvG~~h~~---~l~~~~g~~~~~~mr~iK~a~D 295 (355)
++-+.+.|..+.. .++.-+..++++.+++.+. +.++||-. |.| +.|.- -+..-+ | .++-+.++++.+|
T Consensus 424 rds~~i~~~~~~~--~~~~~~~~~~~~f~~~E~i~l~~yggRP--HWG--K~h~~~~~~l~~~Y-P-~~~dF~alR~~~D 495 (557)
T TIGR01677 424 EDAVDFDFTYYRA--KDPLTPRLYEDVIEEIEQMAFFKYGALP--HWG--KNRNLAFDGVIRKY-P-NADKFLKVKDSYD 495 (557)
T ss_pred CceEEEEEEEecC--CCCcccchHHHHHHHHHHHHHhhcCCCC--Ccc--ccccchHHHHHHhC-C-CHHHHHHHHHhcC
Confidence 3444455544331 1233456688888999996 99999866 543 33321 111112 2 3567899999999
Q ss_pred CCccccC
Q psy4129 296 PKNVFAN 302 (355)
Q Consensus 296 P~~IlNp 302 (355)
|++++-+
T Consensus 496 P~g~F~N 502 (557)
T TIGR01677 496 PKGLFSS 502 (557)
T ss_pred CCCccCC
Confidence 9887543
No 30
>PLN02441 cytokinin dehydrogenase
Probab=78.50 E-value=1.4 Score=46.49 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCC-CccCC
Q psy4129 325 SSVGVELYQSTKRQLDPKNIFANG-NLLRS 353 (355)
Q Consensus 325 g~~~~~lm~~iK~~fDP~gilNPG-ki~~~ 353 (355)
|+ -++-+.+.|+.|||++||+|| +||+.
T Consensus 492 G~-~w~~f~~~K~~yDP~~iL~pgq~if~~ 520 (525)
T PLN02441 492 GP-KWETFVRRKAKFDPLAILSPGQRIFNR 520 (525)
T ss_pred cc-hHHHHHHHHhhCCchhhcCCCCccCCC
Confidence 53 588999999999999999999 55543
No 31
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=74.03 E-value=20 Score=36.98 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=71.1
Q ss_pred eeeeeecchHHHHHHHHHHHHHHHHHhcCCcc-ceeEeEeeee-cCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHH
Q psy4129 122 FETSVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQT-YDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEI 199 (355)
Q Consensus 122 ~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~h~gh~-yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~ 199 (355)
.|-+||.++.+++++++++.+++.-+..+... ..+-.++.-. +. +
T Consensus 305 ~Ey~vP~~~~~~al~~l~~~~~~~~~~~~~~v~fpiEvR~~~~~~~----------------D----------------- 351 (438)
T TIGR01678 305 QEWGIPREKTKEALLELKAMLEAHAKNKEVYAHYPVEVRFTRGTLP----------------D----------------- 351 (438)
T ss_pred eeecccHHHHHHHHHHHHHHHHhcccccCceEeeeEEEEEeCCCCC----------------C-----------------
Confidence 59999999999999999998864211012221 1222333310 00 0
Q ss_pred HHHhhhhhhhhhhhccccccc-CCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCcccc----cc
Q psy4129 200 IACVMNVEHYLISCRVTQTYD-AGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRS----HW 274 (355)
Q Consensus 200 ~~~~~n~~~~~~~~h~sh~y~-~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~----~~ 274 (355)
-+.+|.+|. +-+.|.+ ..|... .....++++.+++.+.+.++||-. |.| +.|. .-
T Consensus 352 ------------d~wLSp~~~rds~~i~~-~~y~~~---~~~~~~~~~f~~~E~i~~~~gGRP--HWg--K~h~~~~~~~ 411 (438)
T TIGR01678 352 ------------ECLLSPCFQVDTCYINA-IMYRPF---GKDVPRLDYFLAYETIMKKFGGKP--HWA--KAHNVCKQKD 411 (438)
T ss_pred ------------ceecCCCCCCceEEEEE-EEccCC---CCCCCHHHHHHHHHHHHHHcCCCC--Cch--hcccccCHHH
Confidence 134566663 3444444 223211 112345577888888999999876 553 4443 11
Q ss_pred ccccCChhHHHHHHHHHhhcCCCcccc
Q psy4129 275 YPKQVSSVGVELYQSTKRQLDPKNVFA 301 (355)
Q Consensus 275 l~~~~g~~~~~~mr~iK~a~DP~~IlN 301 (355)
+..-+ | .++-+.++++.+||++++.
T Consensus 412 l~~~Y-P-~~~~F~~vr~~~DP~g~F~ 436 (438)
T TIGR01678 412 FEEMY-P-TLHKFCDIRKKLDPTGVFL 436 (438)
T ss_pred HHHHC-c-CHHHHHHHHHhhCcccccC
Confidence 22212 2 3566889999999998753
No 32
>PLN02441 cytokinin dehydrogenase
Probab=72.28 E-value=31 Score=36.65 Aligned_cols=77 Identities=12% Similarity=0.097 Sum_probs=44.7
Q ss_pred cccccCCceeeEeeecccCCC-CCccchHHHHHHHHHHHHHHcCCeeEEecccCcccccccccc---------CChhHHH
Q psy4129 216 TQTYDAGCCIYFYFGYNFMGQ-KDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQ---------VSSVGVE 285 (355)
Q Consensus 216 sh~y~~G~~l~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~---------~g~~~~~ 285 (355)
|=+-|++...|..-..+...+ ....+...+-.+++.+.+.+.|+-+ +.|++.. .|+ -.+
T Consensus 428 s~~~P~~~~~y~v~~l~~~~p~~~~~~~~~~~n~~i~~~~~~~g~~~----------k~Yl~~~~~~~~W~~HfG~-~w~ 496 (525)
T PLN02441 428 SAVIPDEDIFYLVALLRSALPSGDDLEHLLAQNKEILRFCEKAGIGV----------KQYLPHYTTQEEWKRHFGP-KWE 496 (525)
T ss_pred ccccCCCCeEEEEEEcCCCCCCcccHHHHHHHHHHHHHHHHHcCCce----------EEcCCCCCCHHHHHHHhcc-hHH
Confidence 344467777775444442111 1233344444466666666666522 2333333 333 367
Q ss_pred HHHHHHhhcCCCccccCC
Q psy4129 286 LYQSTKRQLDPKNVFANG 303 (355)
Q Consensus 286 ~mr~iK~a~DP~~IlNpG 303 (355)
.+.+.|+.+||..||.||
T Consensus 497 ~f~~~K~~yDP~~iL~pg 514 (525)
T PLN02441 497 TFVRRKAKFDPLAILSPG 514 (525)
T ss_pred HHHHHHhhCCchhhcCCC
Confidence 788999999999999999
No 33
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=71.25 E-value=50 Score=35.25 Aligned_cols=39 Identities=28% Similarity=0.196 Sum_probs=27.5
Q ss_pred eeeeeeeeecc-------hHHHHHHHHHHHHHHHHHhcCCcc-ceeEeEee
Q psy4129 119 AESFETSVPWD-------KAILLCTNVKQRVARECKVMNVEH-YLISCRVT 161 (355)
Q Consensus 119 ~~t~D~aVP~s-------~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~h~g 161 (355)
-+..|.|+|.+ +.+++++++++.+++ .+++. +.+-.+++
T Consensus 380 q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~----~~~~~~fPiEvR~t 426 (541)
T TIGR01676 380 QWVSETCFPAGTLAKPNMKDIEYIEELKQLIEK----ENIPAPAPIEQRWT 426 (541)
T ss_pred eEEEEEEEecccccccccchHHHHHHHHHHHHh----cCCCCCCCeEEEee
Confidence 35579999999 559999999999874 34441 23445554
No 34
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=70.38 E-value=45 Score=35.88 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=35.0
Q ss_pred chHHHHH-HHHHHHHHHcCCeeEEecccCccccc-----------cccccCChhHHHHHHHHHhhcCCCcccc
Q psy4129 241 GSYDYIE-HCARDEIIACGGSISHHHGVGKLRSH-----------WYPKQVSSVGVELYQSTKRQLDPKNVFA 301 (355)
Q Consensus 241 ~~~~~~~-~~v~~~~~~~GGtisghHGvG~~h~~-----------~l~~~~g~~~~~~mr~iK~a~DP~~IlN 301 (355)
+.+..+. ..+..+..++||-. |. |+.|.+ -|..-+ | ++.+.++.+.+||++++-
T Consensus 497 ~~~~~yf~~~~e~i~~~yggRP--HW--gK~h~~~~~~~~~~~~~~L~~~Y-P--~d~F~~~R~~lDP~g~f~ 562 (573)
T PLN02465 497 EEFFHYRKKTQRNLWDKYSAYE--HW--AKIEVPKDKEELEALRERLRKRF-P--VDAFNKARKELDPKGILS 562 (573)
T ss_pred HHHHHHHHHHHHHHHHHcCCCc--cc--ceeccccccchhhcCHHHHHhhC-C--HHHHHHHHHHhCCCCccC
Confidence 3444565 77778889999865 54 355541 112222 3 567889999999998754
No 35
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=68.10 E-value=12 Score=34.54 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=55.6
Q ss_pred eEEEEEEEcCHHHHHHHHHHHHHHHHHcCCCCCchhHhH-hHHH-hhhhH-----HHHHHhhcccCce----eeeeeeee
Q psy4129 58 CVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGM-RGYM-LTFVI-----AYIRDLALDYHIL----AESFETSV 126 (355)
Q Consensus 58 ~~l~~~~~G~~~~v~~~~~~i~~i~~~~g~~~~~~~~~~-~~~~-~R~~~-----~~~~~~~~~~~~~----~~t~D~aV 126 (355)
.-+.+.+.|..+++++.+..|+++.+..-...-++..+. ..+. .+... ..+.+.....|+- ....+|++
T Consensus 37 n~vkV~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~a 116 (204)
T COG3286 37 NRVKVNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNA 116 (204)
T ss_pred ceEEEEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCC
Confidence 578899999999999999999998887655433222111 1221 11111 2333333223321 23479999
Q ss_pred ecchHHHHHHHHHHHHHH
Q psy4129 127 PWDKAILLCTNVKQRVAR 144 (355)
Q Consensus 127 P~s~l~~~~~~v~~~~~~ 144 (355)
|||.+-++++++.+..++
T Consensus 117 p~~ev~E~vreLse~~~E 134 (204)
T COG3286 117 PWSEVVELVRELSEVYRE 134 (204)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999887753
No 36
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=51.02 E-value=14 Score=26.08 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=14.2
Q ss_pred HHHHHHHHHhhcCCCccccC
Q psy4129 283 GVELYQSTKRQLDPKNVFAN 302 (355)
Q Consensus 283 ~~~~mr~iK~a~DP~~IlNp 302 (355)
..+.+++||+..||++++..
T Consensus 23 n~~rL~~iK~~yDP~n~F~~ 42 (47)
T PF08031_consen 23 NYDRLRAIKRKYDPDNVFRF 42 (47)
T ss_dssp GHHHHHHHHHHH-TT-TS-S
T ss_pred hHHHHHHHHHHhCccceeCC
Confidence 46889999999998877653
No 37
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=37.66 E-value=1.3e+02 Score=30.81 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=25.1
Q ss_pred HHHHHHHhhcC-----CCccccCCCccccCCCCCccc
Q psy4129 285 ELYQSTKRQLD-----PKNVFANGGSISHHHGVGKLR 316 (355)
Q Consensus 285 ~~mr~iK~a~D-----P~~IlNpGg~is~eHGiG~~k 316 (355)
+.++.+++.+. |+.+++||-.+.+..|+-..+
T Consensus 254 ~~~~~l~~~~~~~~~~~~l~~EPGR~iv~~aG~Lvt~ 290 (394)
T COG0019 254 AYAKALKEAFGEYAEDVELILEPGRAIVANAGVLVTE 290 (394)
T ss_pred HHHHHHHHHHhhccCCCeEEEccchhhhhcceeEEEE
Confidence 46677777666 889999999999999965443
No 38
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=27.43 E-value=2e+02 Score=26.53 Aligned_cols=86 Identities=8% Similarity=0.030 Sum_probs=52.4
Q ss_pred eEEEEEEEcCHHHHHHHHHHHHHHHHHcCC----CCCch-hHhHhHHHhhh--hHHHHHHhhcccCc----eeeeeeeee
Q psy4129 58 CVTTLLFEGDPEDVKKNQAKIYSIALKFGG----IPAGE-TNGMRGYMLTF--VIAYIRDLALDYHI----LAESFETSV 126 (355)
Q Consensus 58 ~~l~~~~~G~~~~v~~~~~~i~~i~~~~g~----~~~~~-~~~~~~~~~R~--~~~~~~~~~~~~~~----~~~t~D~aV 126 (355)
.-|.+++.|++.++++....|+++.+.... ...-+ ......-.++. -.+.+.+...-.|+ -.+...|.+
T Consensus 34 n~l~I~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a 113 (190)
T PF09840_consen 34 NSLKIEIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDA 113 (190)
T ss_pred CEEEEEEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecC
Confidence 468899999999999999998888775443 11100 00111112222 11233333212222 234578999
Q ss_pred ecchHHHHHHHHHHHHH
Q psy4129 127 PWDKAILLCTNVKQRVA 143 (355)
Q Consensus 127 P~s~l~~~~~~v~~~~~ 143 (355)
||+.+-++.+++.+..+
T Consensus 114 ~~eev~~l~~~Lse~~~ 130 (190)
T PF09840_consen 114 PLEEVVELAERLSEIYK 130 (190)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999988775
No 39
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=26.86 E-value=3e+02 Score=26.85 Aligned_cols=81 Identities=12% Similarity=0.072 Sum_probs=50.0
Q ss_pred EEEEEEEcC-HHHHHHHHHHHHHHHHHcCCCCC--------------c-------hhHhHhHHHhhhhHHHHHHhhcccC
Q psy4129 59 VTTLLFEGD-PEDVKKNQAKIYSIALKFGGIPA--------------G-------ETNGMRGYMLTFVIAYIRDLALDYH 116 (355)
Q Consensus 59 ~l~~~~~G~-~~~v~~~~~~i~~i~~~~g~~~~--------------~-------~~~~~~~~~~R~~~~~~~~~~~~~~ 116 (355)
+-.+.+||+ ..+|-+..+.+.+-+++.++-.+ + +++.+.||..|--...+++.+...|
T Consensus 187 ip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g 266 (300)
T PF00676_consen 187 IPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEG 266 (300)
T ss_dssp SEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTT
T ss_pred CcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcC
Confidence 445779995 68888888888888988655221 2 2333567777654555555555556
Q ss_pred ceeeeeeeeeecchHHHHHHHHHHHHHHHHH
Q psy4129 117 ILAESFETSVPWDKAILLCTNVKQRVARECK 147 (355)
Q Consensus 117 ~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~ 147 (355)
.+. -+.+.++.+++++.++++++
T Consensus 267 ~~t--------~~~~~~i~~e~~~~v~~a~~ 289 (300)
T PF00676_consen 267 VLT--------EEELDAIEAEIKAEVEEAVE 289 (300)
T ss_dssp SS---------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--------HHHHHHHHHHHHHHHHHHHH
Confidence 432 25677777777776665543
No 40
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=21.61 E-value=56 Score=30.70 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=17.5
Q ss_pred cccccCChHHHHHHHHHHHhcCCCCCCCC
Q psy4129 319 WYPKQVSSVGVELYQSTKRQLDPKNIFAN 347 (355)
Q Consensus 319 ~l~~~~g~~~~~lm~~iK~~fDP~gilNP 347 (355)
.+...|+ .++-+.++|+.+||+|+|..
T Consensus 227 ~l~~~Yp--~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 227 QLRKLYP--RLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp HHHHT-T--THHHHHHHHHHH-TT-TT--
T ss_pred HHHHHCc--CHHHHHHHHHHhCCCCCCCC
Confidence 3555552 57889999999999999864
No 41
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=21.44 E-value=3.7e+02 Score=26.37 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=57.3
Q ss_pred EEEEEEEcCHHHHHHHHHHHHHHHHHcCC-CC-Cc---hhHhHhHHHhh------------------hhHHHHHHhhccc
Q psy4129 59 VTTLLFEGDPEDVKKNQAKIYSIALKFGG-IP-AG---ETNGMRGYMLT------------------FVIAYIRDLALDY 115 (355)
Q Consensus 59 ~l~~~~~G~~~~v~~~~~~i~~i~~~~g~-~~-~~---~~~~~~~~~~R------------------~~~~~~~~~~~~~ 115 (355)
.++++.+-++.+.+.+.+.++++.+..|+ +. ++ .+..+++-..+ +..|..+.....-
T Consensus 54 ~V~vq~~~~~~D~~~e~~~v~~~~~~~g~~vg~id~~~~e~~a~L~~~~~~~~~GvR~~l~~~p~~~~~a~~~r~~~~rL 133 (279)
T COG3618 54 GVLVQVNVDPRDNEKELAFVAELAERHGGIVGVIDECRPEFAAKLERARYPFFRGVRRNLHVVPDGLFEAPAWRANVERL 133 (279)
T ss_pred eEEEecccCccchHHHHHHHHhhHHhhCceEEEEecCCchHHHHHHHhcccccceeeehhhcCCccchhhHHHHHHHHHH
Confidence 67788877778888889999999999997 21 11 11111111111 0112222221111
Q ss_pred CceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEeEeeee
Q psy4129 116 HILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQT 163 (355)
Q Consensus 116 ~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~h~gh~ 163 (355)
....+++|.++.+.+|++++..+.+ -.++. ++.-|.|+-
T Consensus 134 ~~~gl~fdl~~~~~ql~~~i~l~~~-------~Pd~~--~VldH~G~p 172 (279)
T COG3618 134 AKLGLHFDLQVDPHQLPDLIPLALK-------APDVN--FVLDHCGRP 172 (279)
T ss_pred HhcCCeEEEEeChhhhHHHHHHHhh-------CCCCC--EEeccCCCC
Confidence 2235789999999999999877753 34454 565677653
No 42
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=20.67 E-value=5.6e+02 Score=22.14 Aligned_cols=19 Identities=5% Similarity=-0.006 Sum_probs=14.9
Q ss_pred hccc-ccccCCceeeEeeec
Q psy4129 213 CRVT-QTYDAGCCIYFYFGY 231 (355)
Q Consensus 213 ~h~s-h~y~~G~~l~~~~~~ 231 (355)
||.| |.||+=....++++.
T Consensus 64 SHisIHTwPE~gyaavDift 83 (131)
T PRK01236 64 SHISIHTWPEYGLVTLDVYT 83 (131)
T ss_pred cEEEEEeCccCCeEEEEEEe
Confidence 5666 899998888888863
No 43
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=20.46 E-value=4.2e+02 Score=26.93 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=49.6
Q ss_pred EEEEEcC-HHHHHHHHHHHHHHHHHcCCCCC---------------------chhHhHhHHHhhhhHHHHHHhhcccCce
Q psy4129 61 TLLFEGD-PEDVKKNQAKIYSIALKFGGIPA---------------------GETNGMRGYMLTFVIAYIRDLALDYHIL 118 (355)
Q Consensus 61 ~~~~~G~-~~~v~~~~~~i~~i~~~~g~~~~---------------------~~~~~~~~~~~R~~~~~~~~~~~~~~~~ 118 (355)
-+.+||. .-.|.+..+.+.+.+++.++-.+ ++++.+.|+. |-=+..+++.+...+++
T Consensus 225 gv~VDG~D~~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~ 303 (358)
T COG1071 225 GVRVDGNDVLAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGIL 303 (358)
T ss_pred eEEECCcCHHHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCC
Confidence 3678995 57899889999999998755221 1233345544 54445566666566654
Q ss_pred eeeeeeeeecchHHHHHHHHHHHHHHHH
Q psy4129 119 AESFETSVPWDKAILLCTNVKQRVAREC 146 (355)
Q Consensus 119 ~~t~D~aVP~s~l~~~~~~v~~~~~~~~ 146 (355)
.+ +.+.++.+++++.+.+++
T Consensus 304 se--------e~~~~i~~e~~~~V~ea~ 323 (358)
T COG1071 304 SE--------EELEAIEAEAKAEVDEAV 323 (358)
T ss_pred CH--------HHHHHHHHHHHHHHHHHH
Confidence 32 677778888877776544
No 44
>PLN00061 photosystem II protein Psb27; Provisional
Probab=20.20 E-value=68 Score=28.49 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCccCC
Q psy4129 330 ELYQSTKRQLDPKNIFANGNLLRS 353 (355)
Q Consensus 330 ~lm~~iK~~fDP~gilNPGki~~~ 353 (355)
.+...||..|||+..-.-||.+|.
T Consensus 31 ~~~~~~~~~fdp~e~tksg~~Lpg 54 (150)
T PLN00061 31 GVVGAIKSLFDPNEKTKSGKKLPK 54 (150)
T ss_pred cHHHHHHHhcCccccccccccCch
Confidence 578999999999999999998874
Done!