Query psy4129
Match_columns 355
No_of_seqs 224 out of 1993
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 17:40:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4129.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4129hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 100.0 5.3E-39 1.8E-43 334.6 23.4 246 4-306 339-584 (584)
2 4bby_A Alkyldihydroxyacetoneph 100.0 2.4E-34 8.2E-39 303.2 24.2 248 4-306 409-658 (658)
3 3pm9_A Putative oxidoreductase 100.0 6E-31 2E-35 268.1 17.1 212 6-306 255-476 (476)
4 1e8g_A Vanillyl-alcohol oxidas 99.9 6.2E-24 2.1E-28 220.1 13.8 223 4-352 300-548 (560)
5 1f0x_A DLDH, D-lactate dehydro 99.8 1E-21 3.5E-26 204.0 9.8 170 56-309 388-563 (571)
6 3pm9_A Putative oxidoreductase 99.8 1.2E-21 4.1E-26 199.5 9.3 142 194-351 329-476 (476)
7 1wvf_A 4-cresol dehydrogenase 99.8 9.1E-20 3.1E-24 187.1 16.7 229 5-309 269-516 (520)
8 2exr_A Cytokinin dehydrogenase 99.7 8.9E-19 3E-23 180.2 5.2 197 51-354 304-523 (524)
9 2uuu_A Alkyldihydroxyacetoneph 99.7 1.6E-17 5.3E-22 173.1 4.7 144 196-351 429-584 (584)
10 4bby_A Alkyldihydroxyacetoneph 99.6 5E-17 1.7E-21 171.3 4.5 99 208-351 560-658 (658)
11 1w1o_A Cytokinin dehydrogenase 99.5 3.1E-14 1.1E-18 146.4 7.1 193 56-352 324-534 (534)
12 1wvf_A 4-cresol dehydrogenase 99.5 4.5E-14 1.5E-18 144.8 7.7 143 196-353 360-515 (520)
13 1f0x_A DLDH, D-lactate dehydro 99.3 5.7E-13 2E-17 138.4 3.9 134 197-354 428-563 (571)
14 1e8g_A Vanillyl-alcohol oxidas 98.0 2.6E-06 8.8E-11 88.1 3.4 64 238-309 479-550 (560)
15 2exr_A Cytokinin dehydrogenase 97.8 2.2E-06 7.7E-11 87.9 -1.4 56 245-306 464-519 (524)
16 2vfr_A Xylitol oxidase, aldito 97.6 0.00023 8E-09 70.7 11.2 120 120-302 291-413 (422)
17 1w1o_A Cytokinin dehydrogenase 97.0 6.8E-05 2.3E-09 76.9 -1.6 59 243-306 474-533 (534)
18 2vfr_A Xylitol oxidase, aldito 95.8 0.0059 2E-07 60.5 4.4 105 239-348 298-414 (422)
19 4feh_A Oxidoreductase DPRE1; a 86.5 4.3 0.00015 40.8 11.1 112 122-300 355-470 (481)
20 2i0k_A Oxidoreductase; MIX alp 78.9 20 0.00069 36.5 12.8 27 119-145 378-406 (561)
21 1hsk_A UDP-N-acetylenolpyruvoy 78.2 0.24 8.4E-06 47.4 -1.8 39 55-93 269-308 (326)
22 3js8_A Cholesterol oxidase; ch 64.4 49 0.0017 33.8 11.5 81 215-300 423-530 (540)
23 3tsh_A Pollen allergen PHL P 4 64.4 7.9 0.00027 38.7 5.6 26 327-352 469-494 (500)
24 2bvf_A 6-hydroxy-D-nicotine ox 48.5 6.8 0.00023 38.8 1.9 35 317-351 420-454 (459)
25 2ipi_A Aclacinomycin oxidoredu 47.6 7.5 0.00026 39.3 2.1 32 317-349 484-515 (521)
26 3pg6_A E3 ubiquitin-protein li 45.3 8 0.00028 33.4 1.6 39 301-346 69-107 (159)
27 3vte_A Tetrahydrocannabinolic 43.8 17 0.00058 36.9 4.0 66 282-348 430-507 (518)
28 3fw9_A Reticuline oxidase; BI- 37.0 23 0.00079 35.6 3.8 66 283-349 408-489 (495)
29 1zr6_A Glucooligosaccharide ox 29.9 16 0.00056 36.6 1.3 30 318-348 444-473 (503)
30 3vej_A Ubiquitin-like protein 29.1 13 0.00045 25.0 0.3 16 123-138 3-18 (41)
31 4hhu_A OR280; engineered prote 28.0 2.5E+02 0.0086 23.1 11.0 57 237-294 91-150 (170)
32 3rja_A Carbohydrate oxidase; p 24.4 34 0.0012 34.0 2.4 30 318-348 437-466 (473)
33 2wdx_A Putative hexose oxidase 23.9 34 0.0011 34.5 2.3 30 319-349 490-519 (523)
34 3pop_A GILR oxidase; FAD bindi 20.9 34 0.0012 34.3 1.6 29 319-348 468-496 (501)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=5.3e-39 Score=334.61 Aligned_cols=246 Identities=24% Similarity=0.446 Sum_probs=185.8
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIAL 83 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~~ 83 (355)
+++|+.|+++||||+.++++.....+..+...++++++++.|+.++++++.+..|+|+++|+|++++++++.+.+.++|+
T Consensus 339 ~~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llve~~g~~~~v~~~~~~~~~~~~ 418 (584)
T 2uuu_A 339 RSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILS 418 (584)
T ss_dssp HHHTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTTTCEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred HhcCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCCccEEEEEEEecChHHHHHHHHHHHHHHH
Confidence 45799999999999999886554333333344444555455764445776567799999999999999999999999999
Q ss_pred HcCCCCCchhHhHhHHHhhhhHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEeEeeee
Q psy4129 84 KFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQT 163 (355)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~h~gh~ 163 (355)
++|+..++++..+.|+.+|+..|++++..+..+...+++||+||||+++++++++++.+.++++++|++ +.++||+||+
T Consensus 419 ~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l~~~~~~~g~~-~~~~~h~gH~ 497 (584)
T 2uuu_A 419 KNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIP-AWICAHISHT 497 (584)
T ss_dssp TTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTTCC-EEEEEEEEEE
T ss_pred HCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHHHhHHHhcCCe-eEEEEEEEee
Confidence 999876655444555555568899998876777677889999999999999999999988888899988 4788999999
Q ss_pred cCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchH
Q psy4129 164 YDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSY 243 (355)
Q Consensus 164 yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~ 243 (355)
||+|+|+|+++.+++. .+++.+++
T Consensus 498 gd~G~~~~~~~~~~~~--------------------------------------------------------~~~~~~~~ 521 (584)
T 2uuu_A 498 YTNGVCLYFIFASKQN--------------------------------------------------------ENKDMAQY 521 (584)
T ss_dssp ETTEEEEEEEEEEECC--------------------------------------------------------TTCCTHHH
T ss_pred cCCCcEEEEEeccCCC--------------------------------------------------------ChhhHHHH
Confidence 9999888877765532 24556788
Q ss_pred HHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcc
Q psy4129 244 DYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSI 306 (355)
Q Consensus 244 ~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~i 306 (355)
+++.+.+++.++++|||+|||||||..|++||..++++..+++|++||++|||++||||||+|
T Consensus 522 ~~~~~~~~~~v~~~gGsiS~EHGiG~~k~~~l~~~~g~~~~~lmr~iK~a~DP~gIlNPGki~ 584 (584)
T 2uuu_A 522 IEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDICNPRKLI 584 (584)
T ss_dssp HHHHHHHHHHHHHTTCCCC------------------CTHHHHHHHHHHHHCTTCCBSCCCC-
T ss_pred HHHHHHHHHHHHHcCCcEEecccCCcccHHHHHHhcCHHHHHHHHHHHHHcCCCcCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999985
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=2.4e-34 Score=303.21 Aligned_cols=248 Identities=56% Similarity=1.032 Sum_probs=206.0
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCC-CCccccccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPV-PGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIA 82 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~ 82 (355)
+++++.|+++||||+.++++.....+. ...+..++++.+..++....+++.+..+++++.++|+.+.+..+.+.+.+++
T Consensus 409 ~~~~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~ 488 (658)
T 4bby_A 409 AKQRCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIA 488 (658)
T ss_dssp HHTTCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHcCCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 568999999999999999987665543 2344555666666666556677777889999999999999999999999999
Q ss_pred HHcCCCCCchhHhHhHHHhhhhHHHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCcc-ceeEeEee
Q psy4129 83 LKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVT 161 (355)
Q Consensus 83 ~~~g~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~h~g 161 (355)
.++|+...+++..+.||..|+..++++++....+...+++|++||||+++++++.+++.+.+.+.+.++.. .+..||++
T Consensus 489 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l~~~~~~~g~~~~~~~~~~~~ 568 (658)
T 4bby_A 489 AKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQFPPLSTCRVT 568 (658)
T ss_dssp HTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred HhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEE
Confidence 99999888888889999999999999988878888889999999999999999999999998888887642 25678999
Q ss_pred eecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccc
Q psy4129 162 QTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIG 241 (355)
Q Consensus 162 h~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~ 241 (355)
|+||+|+|+||++.++..+ .+++.+
T Consensus 569 h~~dg~~~l~~~~~~~~~~-------------------------------------------------------~~d~~~ 593 (658)
T 4bby_A 569 QTYDAGACIYFYFAFNYRG-------------------------------------------------------ISDPLA 593 (658)
T ss_dssp EECSSEEEEEEEEEEECTT-------------------------------------------------------CSCHHH
T ss_pred EEeccCceEEEEecCCcCC-------------------------------------------------------chhHHH
Confidence 9999999998888776541 245667
Q ss_pred hHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcc
Q psy4129 242 SYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSI 306 (355)
Q Consensus 242 ~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~i 306 (355)
.++++.+.+++.+.++|||||||||||..|++||..++++..+++|++||++|||++||||||++
T Consensus 594 ~~~~~~~~~~~~v~~~GGsiS~EHGIG~~k~~~l~~~~g~~~l~lmr~IK~a~DP~gILNPGKll 658 (658)
T 4bby_A 594 VFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658 (658)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCSSSCCTTTSGGGHHHHHCHHHHHHHHHHHHHHSTTCSSCSCCCC
T ss_pred HHHHHHHHHHHHHHHcCCeEEEcccchHHHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999985
No 3
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=99.97 E-value=6e-31 Score=268.05 Aligned_cols=212 Identities=15% Similarity=0.186 Sum_probs=161.9
Q ss_pred cCCCccEEEeecHHHHHhhhccCCCCCccccccchhhhhhhhhc-cCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHHHH
Q psy4129 6 QRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKI-KGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIALK 84 (355)
Q Consensus 6 ~g~~p~~~el~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~~~ 84 (355)
+|+.|+++||||+..+++.+. +. +. ..++.+..++|++||+|+.++++++++.+.++|.+
T Consensus 255 ~g~~p~a~El~d~~~~~~~~~------------------~~-~~~~~~~~~~~~~llve~~g~~~~~~~~~~~~~~~~~~ 315 (476)
T 3pm9_A 255 AAGNLTSFELIAETPLDFSVR------------------HA-NNRDPLEARYPWYVLIELSSPRDDARAALESILERGFE 315 (476)
T ss_dssp HGGGEEEEEEEEHHHHHHHHH------------------HT-TCCCCSSSCCSEEEEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred cCCCceEEEecCHHHHHHHHh------------------cc-CCCCCCCccCCeEEEEEEccCcHHHHHHHHHHHHHHHh
Confidence 589999999999999986442 11 00 12223346899999999888899999999999998
Q ss_pred cCCCC-C----chhHhHhHHHhhhhH-HHHHHhhcccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhc--CCcccee
Q psy4129 85 FGGIP-A----GETNGMRGYMLTFVI-AYIRDLALDYHILAESFETSVPWDKAILLCTNVKQRVARECKVM--NVEHYLI 156 (355)
Q Consensus 85 ~g~~~-~----~~~~~~~~~~~R~~~-~~~~~~~~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~--~~~~~~~ 156 (355)
.|+.. . ++++.+++|+.|... +.++. .+. ..++|++||||+|+++++++++.++ ++ |++. .+
T Consensus 316 ~g~~~~~~~a~~~~~~~~lW~~R~~~~~~~~~----~g~-~~~~Dv~vP~~~l~~~~~~~~~~~~----~~~~~~~~-~~ 385 (476)
T 3pm9_A 316 DGIVVDAAIANSVQQQQAFWKLREEISPAQKP----EGG-SIKHDISVPVAAVPQFIEQANAAVV----ALIPGARP-VP 385 (476)
T ss_dssp TTCCCEEEECCSHHHHHHHHHHHHTHHHHTGG----GCC-EECCEEECCGGGHHHHHHHHHHHHH----HHSTTCEE-EE
T ss_pred cCCCcceEEeCCHHHHHHHHHHHHHHHHHHhh----cCC-ceeEEEEeeHHHHHHHHHHHHHHHH----HhcCCCeE-EE
Confidence 88742 1 456677899999754 33332 222 4689999999999999999998875 55 7652 44
Q ss_pred EeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCC-
Q psy4129 157 SCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMG- 235 (355)
Q Consensus 157 ~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~- 235 (355)
+ ||++| | |+|+.+.++...
T Consensus 386 ~---gH~gd-G--------------------------------------------------------nlH~~i~~~~~~~ 405 (476)
T 3pm9_A 386 F---GHLGD-G--------------------------------------------------------NIHYNVSQPVGAD 405 (476)
T ss_dssp E---EEGGG-T--------------------------------------------------------EEEEEEECCTTCC
T ss_pred E---EEeCC-C--------------------------------------------------------ceEEEEecCCcCC
Confidence 4 44445 4 333444443100
Q ss_pred CCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcc
Q psy4129 236 QKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSI 306 (355)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~i 306 (355)
+++..++++++.+.+++.+.++|||+|||||||..|++||..+++++.+++|++||++|||++||||||+|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~gGsis~EHGiG~~k~~~l~~~~~~~~~~~m~~iK~~~DP~~ilNPGki~ 476 (476)
T 3pm9_A 406 KAEFLARWHDVSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNPGKVV 476 (476)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTCBSCSSSCCTTTTHHHHHHHSCHHHHHHHHHHHHHHCTTSCBSTTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCEEEEcccCchhHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCcC
Confidence 11224678889999999999999999999999999999999999999999999999999999999999985
No 4
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=99.90 E-value=6.2e-24 Score=220.08 Aligned_cols=223 Identities=12% Similarity=0.012 Sum_probs=142.0
Q ss_pred cccCCCccEEEeecHHHHHhhhccCCCCCccc---cccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHH
Q psy4129 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFG---LLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYS 80 (355)
Q Consensus 4 ~~~g~~p~~~el~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~ 80 (355)
+++|+.|+++||||..+ ++.. ++.+..+.. .+.+.....+.. .++ ...++|+++++|++++++++.+.+++
T Consensus 300 ~~~~~~p~~~el~d~~~-~~~~-l~~~~~~~~~~~~~p~~~~~~l~~---~~~-~~~~~l~~e~~g~~~~v~~~~~~i~~ 373 (560)
T 1e8g_A 300 RLGMALQNVPTIRHILL-DAAV-LGDKRSYSSRTEPLSDEELDKIAK---QLN-LGRWNFYGALYGPEPIRRVLWETIKD 373 (560)
T ss_dssp HHTTSSCSCCEEEEHHH-HHHH-HCCGGGTCCCSSCCCHHHHHHHHH---HHT-CCSEEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHcCCCcceeEEechHH-Hhhh-hhhhhhhccCCCCCCHHHHHHHHh---hcC-CCceEEEEEEeCCHHHHHHHHHHHHH
Confidence 45799999999999995 3211 011111110 000000011111 111 24579999999999999999999999
Q ss_pred HHHHcCCCCC----chhHhHhHHHhhh-hH---HHHHHh---hcccCceeeeeeeeeec--chHHHHHHHHHHHHHHHHH
Q psy4129 81 IALKFGGIPA----GETNGMRGYMLTF-VI---AYIRDL---ALDYHILAESFETSVPW--DKAILLCTNVKQRVARECK 147 (355)
Q Consensus 81 i~~~~g~~~~----~~~~~~~~~~~R~-~~---~~~~~~---~~~~~~~~~t~D~aVP~--s~l~~~~~~v~~~~~~~~~ 147 (355)
+|+++|+..+ +.++.+.||. |+ .. |++..+ .+..+-...++|++||+ |+++++++.+++.+ +
T Consensus 374 i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~vP~~~~~l~~~~~~~~~~~----~ 448 (560)
T 1e8g_A 374 AFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVTKKRC----Q 448 (560)
T ss_dssp HHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHHHHHHHHHHHHH----H
T ss_pred HHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeeecCCCHHHHHHHHHHHHHHH----H
Confidence 9999998653 2233567887 64 33 554443 12232223568999999 99999999998766 4
Q ss_pred hcCCccceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeE
Q psy4129 148 VMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYF 227 (355)
Q Consensus 148 ~~~~~~~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~ 227 (355)
++|++. .+ +||++|+. +| +
T Consensus 449 ~~g~~~-~~---~gH~gdGn--------------------------------------lH-------------------~ 467 (560)
T 1e8g_A 449 EAGLDF-IG---TFTVGMRE--------------------------------------MH-------------------H 467 (560)
T ss_dssp HHTCCC-CE---EEEECSSC--------------------------------------EE-------------------E
T ss_pred HcCCce-EE---EEEecCCe--------------------------------------EE-------------------E
Confidence 788763 44 45555542 22 2
Q ss_pred ee--ecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCc
Q psy4129 228 YF--GYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGS 305 (355)
Q Consensus 228 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~ 305 (355)
.+ .++ ..+++.++++.+.+.+. -+.
T Consensus 468 ~i~~~~~----~~~~~~~~~~~~~~~~l-------------------------------------~~~------------ 494 (560)
T 1e8g_A 468 IVCIVFN----KKDLIQKRKVQWLMRTL-------------------------------------IDD------------ 494 (560)
T ss_dssp EEEEEEE----TTCHHHHHHHHHHHHHH-------------------------------------HHH------------
T ss_pred EecccCC----CCCHHHHHHHHHHHHHH-------------------------------------HHH------------
Confidence 22 222 22334444433222221 111
Q ss_pred cccCCCCCccccc--cc---cccC---ChHHHHHHHHHHHhcCCCCCCCCCCccC
Q psy4129 306 ISHHHGVGKLRSH--WY---PKQV---SSVGVELYQSTKRQLDPKNIFANGNLLR 352 (355)
Q Consensus 306 is~eHGiG~~k~~--~l---~~~~---g~~~~~lm~~iK~~fDP~gilNPGki~~ 352 (355)
..|||+|..|++ |+ ..++ ++..+++|++||++|||+|||||||+++
T Consensus 495 -~~eHGiG~~k~~~~~l~~~~~~~~~~g~~~~~lm~~iK~~~DP~gILNPGk~~~ 548 (560)
T 1e8g_A 495 -CAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGV 548 (560)
T ss_dssp -HHHTTCCBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHHHHCTTCCBCTTGGGC
T ss_pred -HHHcCCcccccchhHHHHHHHHhccCCHHHHHHHHHHHHHcCccCCCCCCcccc
Confidence 038999999998 99 8898 8889999999999999999999999985
No 5
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=99.85 E-value=1e-21 Score=203.99 Aligned_cols=170 Identities=13% Similarity=0.087 Sum_probs=117.0
Q ss_pred CceEEEEEEEcCHHHHHHHHHHHHHHHHHcCCCCC--chhHhHhHHHhhhhHH----HHHHhhcccCceeeeeeeeeecc
Q psy4129 56 EMCVTTLLFEGDPEDVKKNQAKIYSIALKFGGIPA--GETNGMRGYMLTFVIA----YIRDLALDYHILAESFETSVPWD 129 (355)
Q Consensus 56 ~~~~l~~~~~G~~~~v~~~~~~i~~i~~~~g~~~~--~~~~~~~~~~~R~~~~----~~~~~~~~~~~~~~t~D~aVP~s 129 (355)
..++|++|++|+.++. ..+.+.++++++++..+ .++++++||..|+..+ ++|.......-..+++||||||+
T Consensus 388 ~~~~llve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g~~~~~Dvavp~~ 465 (571)
T 1f0x_A 388 YEHHLLLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRN 465 (571)
T ss_dssp CSEEEEEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEEEEEEEEEECCTT
T ss_pred CceEEEEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcCCceEEEEEecHH
Confidence 4589999999976532 23555667777644333 4567788888898553 45543322110247899999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhh
Q psy4129 130 KAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHY 209 (355)
Q Consensus 130 ~l~~~~~~v~~~~~~~~~~~~~~~~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~ 209 (355)
+++++ +++++.+. ++++. ..+ +||++| |
T Consensus 466 ~l~~~-~~~~~~l~----~~~~~-~~~---~GH~g~-g------------------------------------------ 493 (571)
T 1f0x_A 466 DTEWY-EHLPPEID----SQLVH-KLY---YGHFMC-Y------------------------------------------ 493 (571)
T ss_dssp CSCCS-CCCCHHHH----TTEEE-EEE---EEETTT-T------------------------------------------
T ss_pred HhHHH-HHHHHHHH----hhCcc-cee---EEEEcC-C------------------------------------------
Confidence 99999 99988775 44433 234 455444 3
Q ss_pred hhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHH
Q psy4129 210 LISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQS 289 (355)
Q Consensus 210 ~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~ 289 (355)
|+|+.+.++ +. .+ ++++.+.+.+.+.++||++|||||||.. |. .+. . |++
T Consensus 494 --------------~~H~~~~~~----~~-~~-~~~i~~~~~~~v~~~GGsisaEHGvG~~---~~----~~~--~-m~~ 543 (571)
T 1f0x_A 494 --------------VFHQDYIVK----KG-VD-VHALKEQMLELLQQRGAQYPAEHNVGHL---YK----APE--T-LQK 543 (571)
T ss_dssp --------------EEEEEEEEE----TT-CC-HHHHHHHHHHHHHHTTCBSCSSSCCTTT---SC----CCH--H-HHH
T ss_pred --------------ceEEeeecC----Cc-hh-HHHHHHHHHHHHHHcCCeEEeeccCCcc---cC----CHH--H-HHH
Confidence 122223332 11 12 7788999999999999999999999997 21 122 2 999
Q ss_pred HHhhcCCCccccCCCccccC
Q psy4129 290 TKRQLDPKNVFANGGSISHH 309 (355)
Q Consensus 290 iK~a~DP~~IlNpGg~is~e 309 (355)
+|++|||+++||||+.++..
T Consensus 544 iK~~~DP~~ilNPGk~~t~~ 563 (571)
T 1f0x_A 544 FYRENDPTNSMNPGIGKTSK 563 (571)
T ss_dssp HHHHHCTTCCBSTTTTTCCC
T ss_pred HHHHhCCCCCCCCCcCcCCc
Confidence 99999999999999998764
No 6
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=99.85 E-value=1.2e-21 Score=199.51 Aligned_cols=142 Identities=19% Similarity=0.257 Sum_probs=112.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHc--C--CeeEEecccCc
Q psy4129 194 CARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIAC--G--GSISHHHGVGK 269 (355)
Q Consensus 194 ~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--G--GtisghHGvG~ 269 (355)
..++.+|++|+++.+... ..|..+..++. -++.++.++.+.+.+.+.++ | ..++||.|+|+
T Consensus 329 ~~~~~lW~~R~~~~~~~~--------~~g~~~~~Dv~-------vP~~~l~~~~~~~~~~~~~~~~~~~~~~~gH~gdGn 393 (476)
T 3pm9_A 329 QQQQAFWKLREEISPAQK--------PEGGSIKHDIS-------VPVAAVPQFIEQANAAVVALIPGARPVPFGHLGDGN 393 (476)
T ss_dssp HHHHHHHHHHHTHHHHTG--------GGCCEECCEEE-------CCGGGHHHHHHHHHHHHHHHSTTCEEEEEEEGGGTE
T ss_pred HHHHHHHHHHHHHHHHHh--------hcCCceeEEEE-------eeHHHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCc
Confidence 568899999999987532 22434444443 45678888888888888887 5 67899999999
Q ss_pred ccccccccc-CChhH-HHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCC
Q psy4129 270 LRSHWYPKQ-VSSVG-VELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFAN 347 (355)
Q Consensus 270 ~h~~~l~~~-~g~~~-~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNP 347 (355)
+|..++.+. ..+++ .+.++++.+.+ -+.+++.||++|+|||||..|++|+..+++++.+++|++||++|||+|||||
T Consensus 394 lH~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gGsis~EHGiG~~k~~~l~~~~~~~~~~~m~~iK~~~DP~~ilNP 472 (476)
T 3pm9_A 394 IHYNVSQPVGADKAEFLARWHDVSQVV-FEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIMNP 472 (476)
T ss_dssp EEEEEECCTTCCHHHHHTTHHHHHHHH-HHHHHHTTCBSCSSSCCTTTTHHHHHHHSCHHHHHHHHHHHHHHCTTSCBST
T ss_pred eEEEEecCCcCChHHHHHHHHHHHHHH-HHHHHHcCCEEEEcccCchhHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCC
Confidence 998887653 22322 34455555544 3677899999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q psy4129 348 GNLL 351 (355)
Q Consensus 348 Gki~ 351 (355)
||++
T Consensus 473 Gki~ 476 (476)
T 3pm9_A 473 GKVV 476 (476)
T ss_dssp TSCC
T ss_pred CCcC
Confidence 9986
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=99.82 E-value=9.1e-20 Score=187.11 Aligned_cols=229 Identities=14% Similarity=0.099 Sum_probs=137.5
Q ss_pred ccCCCccEEEeecHHHHHhhhccCCCCCcc--ccccchhhhhhhhhccCCCCCCceEEEEEEEcCHHHHHHHHHHHHHHH
Q psy4129 5 VQRCQPSSIRLMDNAQFKFGQSLRPVPGYF--GLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIYSIA 82 (355)
Q Consensus 5 ~~g~~p~~~el~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~~~v~~~~~~i~~i~ 82 (355)
++|+.|+++||||+..+.......+.+-+. ..+.......+.. .+. ...++|+++|+|++++++++.+.+++++
T Consensus 269 ~~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~~~g~~~~v~~~~~~i~~~~ 344 (520)
T 1wvf_A 269 MSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQK---DTG-MGAWNLYAALYGTQEQVDVNWKIVTDVF 344 (520)
T ss_dssp HTTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHHHHH---HHC-CCSEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred HcCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHHHHH---hcC-CCceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 579999999999999776543211000000 0000000000110 111 2457899999999999999999999999
Q ss_pred HHcCCCCCc---hhHhHhHHHhhh-hH---HHHHHh---hcccCceeeeeeeeeec--chHHHHHHHHHHHHHHHHHhcC
Q psy4129 83 LKFGGIPAG---ETNGMRGYMLTF-VI---AYIRDL---ALDYHILAESFETSVPW--DKAILLCTNVKQRVARECKVMN 150 (355)
Q Consensus 83 ~~~g~~~~~---~~~~~~~~~~R~-~~---~~~~~~---~~~~~~~~~t~D~aVP~--s~l~~~~~~v~~~~~~~~~~~~ 150 (355)
+++|+..+. ....+.+|..|. .. |....+ .+..+-....+|++||. ++++++++.+++.++ +++
T Consensus 345 ~~~~~~~~~~~~~~~~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vp~~~~~l~~~~~~~~~~~~----~~~ 420 (520)
T 1wvf_A 345 KKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLH----KYG 420 (520)
T ss_dssp HHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHHHHHHHHH----HTT
T ss_pred HHcCCeEEEecccchhhhHHHHHHHhhccCchhhhhccccccCCCceEEeccccCCCHHHHHHHHHHHHHHHH----HcC
Confidence 999986542 112234444554 22 221111 11111113447899998 999999999987664 688
Q ss_pred CccceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeee
Q psy4129 151 VEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFG 230 (355)
Q Consensus 151 ~~~~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~ 230 (355)
++. .+++|+| | | |+|++ +. +.
T Consensus 421 ~~~-~~~gh~g---d-G-------------------------------------nlH~~---------------i~--~~ 441 (520)
T 1wvf_A 421 LDY-VAEFIVA---P-R-------------------------------------DMHHV---------------ID--VL 441 (520)
T ss_dssp CCC-CEEEEEC---S-S-------------------------------------EEEEE---------------EE--EE
T ss_pred CCe-eEeeccc---C-c-------------------------------------ceeee---------------ec--cc
Confidence 763 4555554 4 3 22221 10 12
Q ss_pred cccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCcccc--ccc---cccCChhHHHHHHHHHhhcCCCccccCCCc
Q psy4129 231 YNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRS--HWY---PKQVSSVGVELYQSTKRQLDPKNVFANGGS 305 (355)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~--~~l---~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~ 305 (355)
++ .++++..+++.+.+.+.+.. +.+||+|..|. .++ ..++++..+++|++||++|||++||||||+
T Consensus 442 ~~----~~~~~~~~~~~~~~~~~~~~-----~~ehG~G~~k~~~~~~~~~~~~~g~~~~~lmr~IK~a~DP~~IlNPGki 512 (520)
T 1wvf_A 442 YD----RTNPEETKRADACFNELLDE-----FEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRS 512 (520)
T ss_dssp EE----TTCHHHHHHHHHHHHHHHHH-----HHHTTCCBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHCTTCCBCTTGG
T ss_pred cC----CCCHHHHHHHHHHHHHHHHH-----HHHcCCCccccChhHhhhhhhhcCHHHHHHHHHHHHHcCCCCCCCCCcC
Confidence 22 22333333333333332222 25789999884 577 888999999999999999999999999999
Q ss_pred cccC
Q psy4129 306 ISHH 309 (355)
Q Consensus 306 is~e 309 (355)
+...
T Consensus 513 ~~~~ 516 (520)
T 1wvf_A 513 GIDL 516 (520)
T ss_dssp GCCT
T ss_pred CCCc
Confidence 8763
No 8
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=99.73 E-value=8.9e-19 Score=180.18 Aligned_cols=197 Identities=9% Similarity=0.003 Sum_probs=118.8
Q ss_pred CCCC-CCceEEEEEE-----Ec-CHHHHHHHHHHHHHHHHHcCCCCCc----------hhHhHhHHHhhh-hHHHHHHhh
Q psy4129 51 GFSV-DEMCVTTLLF-----EG-DPEDVKKNQAKIYSIALKFGGIPAG----------ETNGMRGYMLTF-VIAYIRDLA 112 (355)
Q Consensus 51 ~~~~-~~~~~l~~~~-----~G-~~~~v~~~~~~i~~i~~~~g~~~~~----------~~~~~~~~~~R~-~~~~~~~~~ 112 (355)
++|. +..++|+++| +| ++++++++++.+.++++++|+..+. ...... |..|+ ..+.+.
T Consensus 304 ~~p~~~~~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-W~~R~~~~~a~~--- 379 (524)
T 2exr_A 304 RLPQSCGSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSE-EIAKENGTWETP--- 379 (524)
T ss_dssp GSCTTCCSEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHH-HHHHHTTCSSSC---
T ss_pred cCCcccccEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHH-HHhhhhcccccC---
Confidence 4542 3568999999 89 7889999999999999999886432 112222 66665 333221
Q ss_pred cccCceeeeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhh
Q psy4129 113 LDYHILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIE 192 (355)
Q Consensus 113 ~~~~~~~~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~ 192 (355)
.+ ..|++||||+|+++++++++ +|++|++. .+.+.+++.
T Consensus 380 -~~-----~~Dv~VP~s~l~~~~~~v~~--------------------~~~gdgn~--h~~i~~~~~------------- 418 (524)
T 2exr_A 380 -HP-----WLNLFVSKRDIGDFNRTVFK--------------------ELVKNGVN--GPMLVYPLL------------- 418 (524)
T ss_dssp -CC-----CEEEEEEHHHHHHHHHHCCC--------------------CCTTTCCS--SCEEEEEEE-------------
T ss_pred -CC-----eeEEEECHHHHHHHHHHHHH--------------------HHhCCCCc--ceEEEEeCC-------------
Confidence 11 24999999999999877632 34445432 222233321
Q ss_pred hHHHHHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCC----ccchHHHHHHHHHHHHHHcCCeeEEecccC
Q psy4129 193 HCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKD----PIGSYDYIEHCARDEIIACGGSISHHHGVG 268 (355)
Q Consensus 193 ~~~~~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~GGtisghHGvG 268 (355)
.+ .-.+|++|+|++|+++|+.+.....+.+. ..+.+.+..+.+.+. .||.|
T Consensus 419 --------------~~-~~~~r~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~G 473 (524)
T 2exr_A 419 --------------RS-RWDDRTSVVIPEEGEIFYIVALLRFVPPCAKVSSVEKMVAQNQEIVHW----------CVKNG 473 (524)
T ss_dssp --------------GG-GSCTTSSCCCCSSCSEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHH----------HHHTT
T ss_pred --------------ch-HHHhHHHhhCCCCccEEEEEEEeccCCCcccchHHHHHHHHHHHHHHH----------HHHcC
Confidence 00 11378999999999999988653211111 111222222333333 25555
Q ss_pred ccccccccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCC
Q psy4129 269 KLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348 (355)
Q Consensus 269 ~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPG 348 (355)
..++.|+....+ +.+| ..++|+ .+++|++||+.|||+||||||
T Consensus 474 ~~~~~yl~~~~~-----------------------------------~~~w-~~~~G~-~~~~m~~iK~~~DP~~iLnPG 516 (524)
T 2exr_A 474 IDYKLYLPHYKS-----------------------------------QEEW-IRHFGN-RWSRFVDRKAMFDPMAILSPG 516 (524)
T ss_dssp CCEEESSCCCCS-----------------------------------HHHH-HHHHGG-GHHHHHHHHHHHCTTCCBCGG
T ss_pred CccEEeecCCCC-----------------------------------HHHH-HHHhhh-HHHHHHHHHhhcCchhhcCCC
Confidence 555444443332 2223 223354 678999999999999999999
Q ss_pred C-ccCCC
Q psy4129 349 N-LLRSH 354 (355)
Q Consensus 349 k-i~~~~ 354 (355)
| ||+..
T Consensus 517 ~~if~~~ 523 (524)
T 2exr_A 517 QKIFNRS 523 (524)
T ss_dssp GCSSCCC
T ss_pred CccCCCC
Confidence 8 56644
No 9
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.67 E-value=1.6e-17 Score=173.09 Aligned_cols=144 Identities=21% Similarity=0.248 Sum_probs=76.2
Q ss_pred HHHHHHHhhhhhhhhhhhcccccccCCc-eeeEeeecccCCCCCccchHHHHHHHHHH----HHHHcCCe--eEEe---c
Q psy4129 196 RDEIIACVMNVEHYLISCRVTQTYDAGC-CIYFYFGYNFMGQKDPIGSYDYIEHCARD----EIIACGGS--ISHH---H 265 (355)
Q Consensus 196 ~~~~~~~~~n~~~~~~~~h~sh~y~~G~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~~~~GGt--isgh---H 265 (355)
++++|+.|++..|...-.-.. .|. ...+++.+ +...+.++.+.+.+ .+.++|-. +++| .
T Consensus 429 ~~~lW~~r~~~~~~l~~~~~~----~g~~~~~~Dv~V-------P~~~l~~~~~~~~~~l~~~~~~~g~~~~~~~h~gH~ 497 (584)
T 2uuu_A 429 PGKTWAEKRYDLPYIRDFLLD----HNMWVDVAETTV-------SYANLQTLWKDAKQTFVKHFKDQGIPAWICAHISHT 497 (584)
T ss_dssp STTHHHHGGGGHHHHHHHHHT----TTEEEEEEEEEE-------EHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEE
T ss_pred HHHHHHHhhhchHHHHhhhcc----cCCccccceEEe-------eHHHHHHHHHHHHHHHHhHHHhcCCeeEEEEEEEee
Confidence 357999999988864321111 122 22234433 33444444444444 46777743 3444 4
Q ss_pred ccCc-c-ccccccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCC
Q psy4129 266 GVGK-L-RSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKN 343 (355)
Q Consensus 266 GvG~-~-h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~g 343 (355)
|+|. . +..++.....++..+.++++++.+ -+.++..||++|+|||||+.|++|+..+++++.+++|++||++|||+|
T Consensus 498 gd~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~gGsiS~EHGiG~~k~~~l~~~~g~~~~~lmr~iK~a~DP~g 576 (584)
T 2uuu_A 498 YTNGVCLYFIFASKQNENKDMAQYIEAKKLM-TDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKD 576 (584)
T ss_dssp ETTEEEEEEEEEEECCTTCCTHHHHHHHHHH-HHHHHHTTCCCC------------------CTHHHHHHHHHHHHCTTC
T ss_pred cCCCcEEEEEeccCCCChhhHHHHHHHHHHH-HHHHHHcCCcEEecccCCcccHHHHHHhcCHHHHHHHHHHHHHcCCCc
Confidence 5643 3 332332211122334455555544 367789999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc
Q psy4129 344 IFANGNLL 351 (355)
Q Consensus 344 ilNPGki~ 351 (355)
||||||++
T Consensus 577 IlNPGki~ 584 (584)
T 2uuu_A 577 ICNPRKLI 584 (584)
T ss_dssp CBSCCCC-
T ss_pred CCCCCCCC
Confidence 99999986
No 10
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.64 E-value=5e-17 Score=171.31 Aligned_cols=99 Identities=51% Similarity=0.922 Sum_probs=78.7
Q ss_pred hhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHH
Q psy4129 208 HYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELY 287 (355)
Q Consensus 208 ~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~m 287 (355)
|....||++|+|+.|.|+||.+.++ ..... +..+.+
T Consensus 560 ~~~~~~~~~h~~dg~~~l~~~~~~~----~~~~~----------------------------------------d~~~~~ 595 (658)
T 4bby_A 560 PPLSTCRVTQTYDAGACIYFYFAFN----YRGIS----------------------------------------DPLAVF 595 (658)
T ss_dssp CCEEEEEEEEECSSEEEEEEEEEEE----CTTCS----------------------------------------CHHHHH
T ss_pred cccceEEEEEEeccCceEEEEecCC----cCCch----------------------------------------hHHHHH
Confidence 3456799999999999999988753 11111 122334
Q ss_pred HHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCCcc
Q psy4129 288 QSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351 (355)
Q Consensus 288 r~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki~ 351 (355)
++++..+ -+.++..||+||+|||||..|++|+.+++++..+++|++||++|||+|||||||++
T Consensus 596 ~~~~~~~-~~~v~~~GGsiS~EHGIG~~k~~~l~~~~g~~~l~lmr~IK~a~DP~gILNPGKll 658 (658)
T 4bby_A 596 EQTEAAA-REEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKDYVDPTNIFGNRNLL 658 (658)
T ss_dssp HHHHHHH-HHHHHHTTCCSCSSSCCTTTSGGGHHHHHCHHHHHHHHHHHHHHSTTCSSCSCCCC
T ss_pred HHHHHHH-HHHHHHcCCeEEEcccchHHHHHHHHHhcCHHHHHHHHHHHHHhCcccCCCCCCCC
Confidence 4444433 24566789999999999999999999999999999999999999999999999986
No 11
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=99.47 E-value=3.1e-14 Score=146.43 Aligned_cols=193 Identities=11% Similarity=0.059 Sum_probs=109.6
Q ss_pred CceEEEEEEE----cC-H--HHHHHHHHHHHHHHHHcCCCCCc---------hhHhHhHHHhhhhHHHHHHhhcccCcee
Q psy4129 56 EMCVTTLLFE----GD-P--EDVKKNQAKIYSIALKFGGIPAG---------ETNGMRGYMLTFVIAYIRDLALDYHILA 119 (355)
Q Consensus 56 ~~~~l~~~~~----G~-~--~~v~~~~~~i~~i~~~~g~~~~~---------~~~~~~~~~~R~~~~~~~~~~~~~~~~~ 119 (355)
..+++++++. |+ + ++++++.+.+.+.+++.++..+. +......|..|....+. ....
T Consensus 324 ~~~~l~ie~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~w~~r~~~~~~-----~~~~-- 396 (534)
T 1w1o_A 324 ATTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLDRVHGEEVALNKLGLWR-----VPHP-- 396 (534)
T ss_dssp CSEEEEEEEEEEC-------CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTHHHHHHHHHHHTTCSS-----SCCC--
T ss_pred cceEEEEEEEEecCCCccchhhhHHHHHHHHHhhcccCCcceeccchHHHHhhhhhhhHHHHhhccccc-----cCCc--
Confidence 5578999987 74 4 77888888888888777763221 01112335555422110 0111
Q ss_pred eeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccce-eEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHH
Q psy4129 120 ESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYL-ISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDE 198 (355)
Q Consensus 120 ~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~-~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~ 198 (355)
+. |++||+|+++++++++.+.+.+ ..+....+ ++.-.||.
T Consensus 397 ~~-d~~vP~s~l~~~~~~~~~~l~~---~~~~~~~~~~~~~~gh~----------------------------------- 437 (534)
T 1w1o_A 397 WL-NMFVPRSRIADFDRGVFKGILQ---GTDIVGPLIVYPLNKSM----------------------------------- 437 (534)
T ss_dssp CE-EEEEEGGGHHHHHHHHTTTTTT---TSCCCSCEEEEEEEGGG-----------------------------------
T ss_pred cc-cEEecHHHHHhHHHHHHHHHhh---ccCCcccEEEeeccccc-----------------------------------
Confidence 23 9999999999999888654431 22210011 11111221
Q ss_pred HHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCcccccccccc
Q psy4129 199 IIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQ 278 (355)
Q Consensus 199 ~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~ 278 (355)
..+|.+|+|++|+++|++.......++++.+..++....+.+.+.+.|
T Consensus 438 ------------~~~~~s~v~~dgn~h~~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------- 485 (534)
T 1w1o_A 438 ------------WDDGMSAATPSEDVFYAVSLLFSSVAPNDLARLQEQNRRILRFCDLAG-------------------- 485 (534)
T ss_dssp ------------SCTTSSCCCCSSSEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred ------------ccccccccCCCccEEEEEEEecCCCCcchHHHHHHHHHHHHHHHHHhC--------------------
Confidence 125778999999888776653110011222223333344444433332
Q ss_pred CChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCC-ccC
Q psy4129 279 VSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGN-LLR 352 (355)
Q Consensus 279 ~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGk-i~~ 352 (355)
..-++.++.+|. +.+|. ..+|++.++.|++||++|||+||||||| ||+
T Consensus 486 ---------------------~~~~~yl~~~~~----~~~w~-~~~G~~~~~~l~~iK~~~DP~~ilnpgk~I~~ 534 (534)
T 1w1o_A 486 ---------------------IQYKTYLARHTD----RSDWV-RHFGAAKWNRFVEMKNKYDPKRLLSPGQDIFN 534 (534)
T ss_dssp ---------------------CCCEESSCCCSS----HHHHH-HHHCHHHHHHHHHHHHHHCTTCCBCGGGCSCC
T ss_pred ---------------------CCcEEECCCCCC----hHHHH-HHhCHHHHHHHHHHHHhcCchhhcCCCCcCCC
Confidence 112344445552 56774 5789878999999999999999999999 664
No 12
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=99.47 E-value=4.5e-14 Score=144.82 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=94.2
Q ss_pred HHHHHHHhhhhh---hhhhhhcccccc-cCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcC--CeeEEecccCc
Q psy4129 196 RDEIIACVMNVE---HYLISCRVTQTY-DAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACG--GSISHHHGVGK 269 (355)
Q Consensus 196 ~~~~~~~~~n~~---~~~~~~h~sh~y-~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G--GtisghHGvG~ 269 (355)
++.+|++|+++. |........ .+ +.|..+.++..+ +.+.+.+.++.+.+.+.+.++| ..+.+|.|+|+
T Consensus 360 ~~~~w~~R~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~v-----p~~~~~l~~~~~~~~~~~~~~~~~~~~~gh~gdGn 433 (520)
T 1wvf_A 360 DTQPFKYRAQLMSGVPNLQEFGLY-NWRGGGGSMWFAPVS-----EARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRD 433 (520)
T ss_dssp TCTTHHHHHHHHTTCCCCGGGGGG-GSSCTEEEEEECBEE-----ESCHHHHHHHHHHHHHHHHHTTCCCCEEEEECSSE
T ss_pred hhhHHHHHHHhhccCchhhhhccc-cccCCCceEEecccc-----CCCHHHHHHHHHHHHHHHHHcCCCeeEeecccCcc
Confidence 467999999886 431110000 11 223333333322 1222667777777778888887 56899999999
Q ss_pred ccccc--ccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCcccc--ccc---cccCChHHHHHHHHHHHhcCCC
Q psy4129 270 LRSHW--YPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRS--HWY---PKQVSSVGVELYQSTKRQLDPK 342 (355)
Q Consensus 270 ~h~~~--l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~--~~l---~~~~g~~~~~lm~~iK~~fDP~ 342 (355)
.|..+ +.+...+++.+.++++-..+ +.. ..+||+|..|. +|+ ..+++++.+++|++||++|||+
T Consensus 434 lH~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~ehG~G~~k~~~~~~~~~~~~~g~~~~~lmr~IK~a~DP~ 504 (520)
T 1wvf_A 434 MHHVIDVLYDRTNPEETKRADACFNEL-----LDE----FEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPN 504 (520)
T ss_dssp EEEEEEEEEETTCHHHHHHHHHHHHHH-----HHH----HHHTTCCBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred eeeeeccccCCCCHHHHHHHHHHHHHH-----HHH----HHHcCCCccccChhHhhhhhhhcCHHHHHHHHHHHHHcCCC
Confidence 99865 33333344443333332221 111 36899999985 688 8999999999999999999999
Q ss_pred CCCCCCCccCC
Q psy4129 343 NIFANGNLLRS 353 (355)
Q Consensus 343 gilNPGki~~~ 353 (355)
|||||||+++.
T Consensus 505 ~IlNPGki~~~ 515 (520)
T 1wvf_A 505 NILAPGRSGID 515 (520)
T ss_dssp CCBCTTGGGCC
T ss_pred CCCCCCcCCCC
Confidence 99999999764
No 13
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=99.31 E-value=5.7e-13 Score=138.41 Aligned_cols=134 Identities=14% Similarity=0.076 Sum_probs=81.6
Q ss_pred HHHHHHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcC--CeeEEecccCcccccc
Q psy4129 197 DEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACG--GSISHHHGVGKLRSHW 274 (355)
Q Consensus 197 ~~~~~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~G--GtisghHGvG~~h~~~ 274 (355)
+..|..|+++.......+-.+....|..+.+++.++.+.- .+. +++. +.+.+.+ +.+.||.|+|+.|..+
T Consensus 428 ~~~~~~R~~~~~~~~~~r~~~~~~~g~~~~~Dvavp~~~l---~~~-~~~~----~~l~~~~~~~~~~GH~g~g~~H~~~ 499 (571)
T 1f0x_A 428 SKAFLHRFAAAGAAIRYQAVHSDEVEDILALDIALRRNDT---EWY-EHLP----PEIDSQLVHKLYYGHFMCYVFHQDY 499 (571)
T ss_dssp HHHHHHHTTHHHHHHHHHHHTTTTEEEEEEEEEECCTTCS---CCS-CCCC----HHHHTTEEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHhhhhhhHHHHhhhcchhhcCCceEEEEEecHHHh---HHH-HHHH----HHHHhhCccceeEEEEcCCceEEee
Confidence 3344555555433222222222123445667777653221 222 3232 2233333 5789999999999988
Q ss_pred ccccCChhHHHHHHHHHhhcCCCccccCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCCCccCCC
Q psy4129 275 YPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLLRSH 354 (355)
Q Consensus 275 l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki~~~~ 354 (355)
+... +.. ++++++.+ -+.+...||++|+|||+|.. |. .+. . |++||++|||+|||||||++.+.
T Consensus 500 ~~~~-~~~----~~~i~~~~-~~~v~~~GGsisaEHGvG~~---~~----~~~--~-m~~iK~~~DP~~ilNPGk~~t~~ 563 (571)
T 1f0x_A 500 IVKK-GVD----VHALKEQM-LELLQQRGAQYPAEHNVGHL---YK----APE--T-LQKFYRENDPTNSMNPGIGKTSK 563 (571)
T ss_dssp EEET-TCC----HHHHHHHH-HHHHHHTTCBSCSSSCCTTT---SC----CCH--H-HHHHHHHHCTTCCBSTTTTTCCC
T ss_pred ecCC-chh----HHHHHHHH-HHHHHHcCCeEEeeccCCcc---cC----CHH--H-HHHHHHHhCCCCCCCCCcCcCCc
Confidence 8642 111 23344333 35567899999999999997 21 222 2 99999999999999999998764
No 14
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.98 E-value=2.6e-06 Score=88.08 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=55.1
Q ss_pred CccchHHHHHHHHHHHHHHcCCeeEEecccCccccc--cc---cccC---ChhHHHHHHHHHhhcCCCccccCCCccccC
Q psy4129 238 DPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSH--WY---PKQV---SSVGVELYQSTKRQLDPKNVFANGGSISHH 309 (355)
Q Consensus 238 ~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~--~l---~~~~---g~~~~~~mr~iK~a~DP~~IlNpGg~is~e 309 (355)
+..++++++.+.+.+.+ +|||+|..|.+ |+ ..++ ++..+++|++||++|||++||||||++.+.
T Consensus 479 ~~~~~~~~~~~~l~~~~--------~eHGiG~~k~~~~~l~~~~~~~~~~g~~~~~lm~~iK~~~DP~gILNPGk~~~~~ 550 (560)
T 1e8g_A 479 IQKRKVQWLMRTLIDDC--------AANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPGKSGVWP 550 (560)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHTTCCBSCCCGGGHHHHHHHTCHHHHHHHHHHHHHHHHHCTTCCBCTTGGGCCC
T ss_pred HHHHHHHHHHHHHHHHH--------HHcCCcccccchhHHHHHHHHhccCCHHHHHHHHHHHHHcCccCCCCCCccccCc
Confidence 44567778887777776 38999999998 99 8888 888899999999999999999999999873
No 15
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=97.77 E-value=2.2e-06 Score=87.89 Aligned_cols=56 Identities=18% Similarity=0.300 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCCcc
Q psy4129 245 YIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSI 306 (355)
Q Consensus 245 ~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg~i 306 (355)
++...+...-...++++++||+ +..| .+++|+ ..++|+++|+.|||++|||||+.|
T Consensus 464 ~i~~~~~~~G~~~~~yl~~~~~----~~~w-~~~~G~-~~~~m~~iK~~~DP~~iLnPG~~i 519 (524)
T 2exr_A 464 EIVHWCVKNGIDYKLYLPHYKS----QEEW-IRHFGN-RWSRFVDRKAMFDPMAILSPGQKI 519 (524)
T ss_dssp HHHHHHHHTTCCEEESSCCCCS----HHHH-HHHHGG-GHHHHHHHHHHHCTTCCBCGGGCS
T ss_pred HHHHHHHHcCCccEEeecCCCC----HHHH-HHHhhh-HHHHHHHHHhhcCchhhcCCCCcc
Confidence 3333333332333356777775 4455 345666 578899999999999999999854
No 16
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=97.65 E-value=0.00023 Score=70.66 Aligned_cols=120 Identities=11% Similarity=0.063 Sum_probs=79.2
Q ss_pred eeeeeeeecchHHHHHHHHHHHHHHHHHhcCCccceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHH
Q psy4129 120 ESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEI 199 (355)
Q Consensus 120 ~t~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~ 199 (355)
...|++||.++++++++++++.+.+ .+.+. ..+..+++|..++.
T Consensus 291 ~~~e~avP~e~~~~~l~~l~~~~~~---~~~~~-~~v~~r~~~~~~~~-------------------------------- 334 (422)
T 2vfr_A 291 LQSEYLMPREHALAALHAMDAIRET---LAPVL-QTCEIRTVAADAQW-------------------------------- 334 (422)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTHHH---HGGGE-EEEEEEEECCBCST--------------------------------
T ss_pred EEEEEEEEHHHHHHHHHHHHHHHHh---CCCce-eeEEEEeecCCccc--------------------------------
Confidence 4469999999999999999988863 22221 13335667644421
Q ss_pred HHHhhhhhhhhhhhcccccccCCc--eeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeE-EecccCcccccccc
Q psy4129 200 IACVMNVEHYLISCRVTQTYDAGC--CIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSIS-HHHGVGKLRSHWYP 276 (355)
Q Consensus 200 ~~~~~n~~~~~~~~h~sh~y~~G~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtis-ghHGvG~~h~~~l~ 276 (355)
+|+ .| .+- ++.|.. +...+.+.++.+++.+.+.++||..+ +. .+......+.
T Consensus 335 ------Ls~---------~~-~r~~~~l~~~~-------~~~~~~~~~~~~~~~~lv~~~gG~~~wgk--~~~~~~~~~~ 389 (422)
T 2vfr_A 335 ------LSP---------AY-GRDTVAAHFTW-------VEDTAAVLPVVRRLEEALVPFAARPHWGK--VFTVPAGELR 389 (422)
T ss_dssp ------TCT---------TB-TSCEEEEEEEE-------CSCHHHHHHHHHHHHHHHGGGTCEECTTS--CCCCCHHHHH
T ss_pred ------cCC---------CC-CCCeEEEEEec-------CCCchhHHHHHHHHHHHHHHcCCcccccc--cCCCCHHHHH
Confidence 111 11 122 333322 22355666888999999999999985 54 3445555666
Q ss_pred ccCChhHHHHHHHHHhhcCCCccccC
Q psy4129 277 KQVSSVGVELYQSTKRQLDPKNVFAN 302 (355)
Q Consensus 277 ~~~g~~~~~~mr~iK~a~DP~~IlNp 302 (355)
..++ .++.++++|+.+||++++|.
T Consensus 390 ~~Yp--~~~~f~~vk~~~DP~g~f~n 413 (422)
T 2vfr_A 390 ALYP--RLADFGALAGALDPAGKFTN 413 (422)
T ss_dssp TTCT--THHHHHHHHHHHCTTCTTCC
T ss_pred HHCc--CHHHHHHHHHHhCCCCccCC
Confidence 6564 47889999999999998874
No 17
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=96.99 E-value=6.8e-05 Score=76.85 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHcCCeeEEecccCccccccccccCChhHHHHHHHHHhhcCCCccccCCC-cc
Q psy4129 243 YDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGG-SI 306 (355)
Q Consensus 243 ~~~~~~~v~~~~~~~GGtisghHGvG~~h~~~l~~~~g~~~~~~mr~iK~a~DP~~IlNpGg-~i 306 (355)
.+++.+.+.+.....++.+..+|. +.+| .+++|++.+++|++||+.+||+++||||+ +|
T Consensus 474 ~~~i~~~~~~~~~~~~~yl~~~~~----~~~w-~~~~G~~~~~~l~~iK~~~DP~~ilnpgk~I~ 533 (534)
T 1w1o_A 474 NRRILRFCDLAGIQYKTYLARHTD----RSDW-VRHFGAAKWNRFVEMKNKYDPKRLLSPGQDIF 533 (534)
T ss_dssp HHHHHHHHHHTTCCCEESSCCCSS----HHHH-HHHHCHHHHHHHHHHHHHHCTTCCBCGGGCSC
T ss_pred HHHHHHHHHHhCCCcEEECCCCCC----hHHH-HHHhCHHHHHHHHHHHHhcCchhhcCCCCcCC
Confidence 344444444444455666667762 5667 46788878999999999999999999999 44
No 18
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=95.84 E-value=0.0059 Score=60.50 Aligned_cols=105 Identities=10% Similarity=-0.044 Sum_probs=66.7
Q ss_pred ccchHHHHHHHHHHHHHH-cCC-----eeEEecccCcccccccc-----ccCChhHHHHHHHHHhhcCCCccccCCCccc
Q psy4129 239 PIGSYDYIEHCARDEIIA-CGG-----SISHHHGVGKLRSHWYP-----KQVSSVGVELYQSTKRQLDPKNVFANGGSIS 307 (355)
Q Consensus 239 ~~~~~~~~~~~v~~~~~~-~GG-----tisghHGvG~~h~~~l~-----~~~g~~~~~~mr~iK~a~DP~~IlNpGg~is 307 (355)
+++...++.+++.+.+.+ +.. ..++|.+.|.++..+=. +.+.+.+.+.++++.+.++ +.+...||...
T Consensus 298 P~e~~~~~l~~l~~~~~~~~~~~~~v~~r~~~~~~~~Ls~~~~r~~~~l~~~~~~~~~~~~~~~~~~~-~lv~~~gG~~~ 376 (422)
T 2vfr_A 298 PREHALAALHAMDAIRETLAPVLQTCEIRTVAADAQWLSPAYGRDTVAAHFTWVEDTAAVLPVVRRLE-EALVPFAARPH 376 (422)
T ss_dssp EGGGHHHHHHHHHHTHHHHGGGEEEEEEEEECCBCSTTCTTBTSCEEEEEEEECSCHHHHHHHHHHHH-HHHGGGTCEEC
T ss_pred EHHHHHHHHHHHHHHHHhCCCceeeEEEEeecCCccccCCCCCCCeEEEEEecCCCchhHHHHHHHHH-HHHHHcCCccc
Confidence 356777777777776665 444 55889899988753111 1111111233333333332 23456788776
Q ss_pred -cCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCCCC
Q psy4129 308 -HHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348 (355)
Q Consensus 308 -~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPG 348 (355)
++. +..+.+++...|+ .++.|+++|+.|||+|+||.-
T Consensus 377 wgk~--~~~~~~~~~~~Yp--~~~~f~~vk~~~DP~g~f~n~ 414 (422)
T 2vfr_A 377 WGKV--FTVPAGELRALYP--RLADFGALAGALDPAGKFTNA 414 (422)
T ss_dssp TTSC--CCCCHHHHHTTCT--THHHHHHHHHHHCTTCTTCCH
T ss_pred cccc--CCCCHHHHHHHCc--CHHHHHHHHHHhCCCCccCCH
Confidence 554 4567788888886 489999999999999999963
No 19
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=86.46 E-value=4.3 Score=40.81 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=69.1
Q ss_pred eeeeeecchHHHHHHHHHHHHHHHHHhcCCcc-ceeEeEeeeecCCCceeeeeeeeccCCCCCCCCcchhhhhHHHHHHH
Q psy4129 122 FETSVPWDKAILLCTNVKQRVARECKVMNVEH-YLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEII 200 (355)
Q Consensus 122 ~D~aVP~s~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~h~gh~yd~G~~~y~~~~~~~~g~~~p~~~~~~~~~~~~~~~~ 200 (355)
.+.+||.+ .++.++++.+.++ +.+... ..+..+++. .|+ .
T Consensus 355 ~e~~vP~~-~~~al~~l~~~i~----~~~~~~~~~v~~R~~~-~d~-----------------~---------------- 395 (481)
T 4feh_A 355 YQFVIPTE-AVDEFKKIIGVIQ----ASGHYSFLNVFKLFGP-RNQ-----------------A---------------- 395 (481)
T ss_dssp EEEEEETT-CHHHHHHHHHHHH----HTTCCCSCCEEEEECC-CCS-----------------C----------------
T ss_pred EEEEeccc-HHHHHHHHHHHHH----hcCCCceEEEEEEEeC-CCC-----------------c----------------
Confidence 58999999 9999999988886 344432 133345542 111 1
Q ss_pred HHhhhhhhhhhhhcccccccCCceeeEeeecccCCCCCccchHHHHHHHHHHHHHHcCCeeEEecccCcccc---ccccc
Q psy4129 201 ACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRS---HWYPK 277 (355)
Q Consensus 201 ~~~~n~~~~~~~~h~sh~y~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~---~~l~~ 277 (355)
-+|..| +|.+|.+.+.. . ..+.++.+++.+.+.++||-. |-| +.+. ..+..
T Consensus 396 -------------~LS~~~-~~~tlal~~~~-----~---~~~~~~~~~le~i~~~~gGRp--hw~--K~~~~~~~~~~~ 449 (481)
T 4feh_A 396 -------------PLSFPI-PGWNICVDFPI-----K---DGLGKFVSELDRRVLEFGGRL--YTA--KDSRTTAETFHA 449 (481)
T ss_dssp -------------TTCCCC-SEEEEEEEEEC-----C---TTHHHHHHHHHHHHHHTTCEE--CGG--GCSSCCHHHHHH
T ss_pred -------------cCCCCC-CceEEEEEccC-----C---ccHHHHHHHHHHHHHHcCCEe--cch--hccCCCHHHHHH
Confidence 133333 47777776542 1 157788889999999999977 332 2221 11111
Q ss_pred cCChhHHHHHHHHHhhcCCCccc
Q psy4129 278 QVSSVGVELYQSTKRQLDPKNVF 300 (355)
Q Consensus 278 ~~g~~~~~~mr~iK~a~DP~~Il 300 (355)
.+ | .++.++++++.+||++++
T Consensus 450 ~Y-P-~~~~F~~lr~~~DP~g~F 470 (481)
T 4feh_A 450 MY-P-RVDEWISVRRKVDPLRVF 470 (481)
T ss_dssp HC-T-THHHHHHHHHHHCTTCCB
T ss_pred hC-c-CHHHHHHHHHhhCCcccc
Confidence 12 2 345678999999998654
No 20
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=78.88 E-value=20 Score=36.50 Aligned_cols=27 Identities=4% Similarity=-0.040 Sum_probs=23.1
Q ss_pred eeeeeeee--ecchHHHHHHHHHHHHHHH
Q psy4129 119 AESFETSV--PWDKAILLCTNVKQRVARE 145 (355)
Q Consensus 119 ~~t~D~aV--P~s~l~~~~~~v~~~~~~~ 145 (355)
....+.+| |.++.+++++++++.+++.
T Consensus 378 f~~~e~av~~P~~~~~~~l~~l~~~i~~~ 406 (561)
T 2i0k_A 378 LTEGGGAVVTSRANIATVINDFTEWFHER 406 (561)
T ss_dssp CEEEEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEcCcHHHHHHHHHHHHHHHHhc
Confidence 45679999 9999999999999988653
No 21
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=78.15 E-value=0.24 Score=47.39 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=33.4
Q ss_pred CCceEEEEEEEc-CHHHHHHHHHHHHHHHHHcCCCCCchh
Q psy4129 55 DEMCVTTLLFEG-DPEDVKKNQAKIYSIALKFGGIPAGET 93 (355)
Q Consensus 55 ~~~~~l~~~~~G-~~~~v~~~~~~i~~i~~~~g~~~~~~~ 93 (355)
+..|.++++++| +.+++.+.++.+++++++.++..+..|
T Consensus 269 ~~~a~~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~E 308 (326)
T 1hsk_A 269 TKHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNRE 308 (326)
T ss_dssp SSCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBC
T ss_pred ccccEEEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEE
Confidence 455789999999 788999999999999999999877543
No 22
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=64.44 E-value=49 Score=33.81 Aligned_cols=81 Identities=10% Similarity=0.066 Sum_probs=49.3
Q ss_pred ccccccCC------ceeeEeeecccCCCCCccchHHHHHHHHHHHHHH-cCC---eeEEecccCccccc--------ccc
Q psy4129 215 VTQTYDAG------CCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIA-CGG---SISHHHGVGKLRSH--------WYP 276 (355)
Q Consensus 215 ~sh~y~~G------~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~GG---tisghHGvG~~h~~--------~l~ 276 (355)
+|.+|+.. .++|+.+..-. ..+ ...+..+++.+.+.+ +|| ++-=|.|=|-.+.. .+.
T Consensus 423 LS~~~~r~~~p~~d~~~~i~~~~~~---~~p--~~~~~~~~~E~~~~~~~~g~~~~~RPhW~K~~~~~~~~~~~~~~~l~ 497 (540)
T 3js8_A 423 LSAIRPRPDHPEWNVAVWLDILTLP---GTP--YANQFYREIEQWIEANFNGSYAAVRPEWSKGWGYTDQAAWADSAMLQ 497 (540)
T ss_dssp TCTTCCCTTCTTCCEEEEEEEEECT---TCT--THHHHHHHHHHHHHHHSCTTTEEEEECTTSBCSCCSSCTTCCHHHHH
T ss_pred cCccCCCCCCCCcceEEEEEeeecC---CCc--cHHHHHHHHHHHHHHhcCCCccccCcccccccccccccccCCHHHHH
Confidence 46677755 37777665421 122 233566778888888 887 77778887733321 222
Q ss_pred cc----C-----ChhHHHHHHHHHhhcCCCccc
Q psy4129 277 KQ----V-----SSVGVELYQSTKRQLDPKNVF 300 (355)
Q Consensus 277 ~~----~-----g~~~~~~mr~iK~a~DP~~Il 300 (355)
.. + +....+.++++++.+||++++
T Consensus 498 ~~~~~~y~~~~~~~~~~~~~~~~~~~~DP~~~F 530 (540)
T 3js8_A 498 TTIPNAFRAGQPAAANWDAAKAALAAYDPYRLF 530 (540)
T ss_dssp THHHHHTTTTCCGGGSHHHHHHHHHHHCTTCCS
T ss_pred hhchhhhccCCCCCCCHHHHHHHHHhcCCCccc
Confidence 21 2 112367788999999998765
No 23
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=64.36 E-value=7.9 Score=38.73 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCccC
Q psy4129 327 VGVELYQSTKRQLDPKNIFANGNLLR 352 (355)
Q Consensus 327 ~~~~lm~~iK~~fDP~gilNPGki~~ 352 (355)
+.++=|++||+.+||+|+|+-..=+|
T Consensus 469 ~Ny~RL~~IK~kyDP~nvF~~~qsI~ 494 (500)
T 3tsh_A 469 GNFERLAITKGKVDPTDYFRNEQSIP 494 (500)
T ss_dssp GGHHHHHHHHHHHCTTCCSCCTTSCC
T ss_pred HHHHHHHHHHHHhCcccccCCCCCCC
Confidence 56888999999999999997543333
No 24
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=48.52 E-value=6.8 Score=38.77 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.8
Q ss_pred cccccccCChHHHHHHHHHHHhcCCCCCCCCCCcc
Q psy4129 317 SHWYPKQVSSVGVELYQSTKRQLDPKNIFANGNLL 351 (355)
Q Consensus 317 ~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGki~ 351 (355)
.++....||+..++=+++||+.+||+|+|.-..=+
T Consensus 420 ~~~~~~~yG~~n~~rL~~iK~kyDP~~vF~~~~~I 454 (459)
T 2bvf_A 420 AEMVAEVYKPEVYSRLAAVKREYDPENRFRHNYNI 454 (459)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHCTTCCCCSSSCC
T ss_pred hHHHHHHhCcchHHHHHHHHHHhCcccccCCCCCC
Confidence 35666778876699999999999999999765433
No 25
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=47.61 E-value=7.5 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=24.8
Q ss_pred cccccccCChHHHHHHHHHHHhcCCCCCCCCCC
Q psy4129 317 SHWYPKQVSSVGVELYQSTKRQLDPKNIFANGN 349 (355)
Q Consensus 317 ~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPGk 349 (355)
.+|....+++ .++-+++||+.+||+|+|+-..
T Consensus 484 ~~~~~~y~g~-n~~RL~~iK~kyDP~~vF~~~q 515 (521)
T 2ipi_A 484 VPWYTLYYKG-NYPRLQKVKARWDPRDVFRHAL 515 (521)
T ss_dssp CCHHHHHHGG-GHHHHHHHHHHHCTTCCSCCTT
T ss_pred hhHHHhhhhh-HHHHHHHHHHHhCCcCEecCCC
Confidence 3455555664 6999999999999999997543
No 26
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=45.30 E-value=8 Score=33.37 Aligned_cols=39 Identities=26% Similarity=0.425 Sum_probs=33.9
Q ss_pred cCCCccccCCCCCccccccccccCChHHHHHHHHHHHhcCCCCCCC
Q psy4129 301 ANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFA 346 (355)
Q Consensus 301 NpGg~is~eHGiG~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilN 346 (355)
|||+-++ |..|..||+.- +++.++++-||+|||=.=||-
T Consensus 69 nPGk~y~-----G~~R~AYLPdn--~eGr~VL~LL~~AF~~rLiFT 107 (159)
T 3pg6_A 69 NPGKRYP-----GIQRTAYLPDN--KEGRKVLKLLYRAFDQKLIFT 107 (159)
T ss_dssp STTCEEC-----CEEEEEEEEES--HHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCccC-----CCCeEEECCCC--HHHHHHHHHHHHHHHcCCEEE
Confidence 7999998 77899999987 789999999999999776653
No 27
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=43.83 E-value=17 Score=36.90 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhcCCCccccCCCccccCCC--CC----------ccccccccccCChHHHHHHHHHHHhcCCCCCCCCC
Q psy4129 282 VGVELYQSTKRQLDPKNVFANGGSISHHHG--VG----------KLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348 (355)
Q Consensus 282 ~~~~~mr~iK~a~DP~~IlNpGg~is~eHG--iG----------~~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilNPG 348 (355)
..++.++++.+.+.|-.--+|++...---. .+ ...+.|-...|+ ..++=+++||+.+||.|+|+-.
T Consensus 430 ~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~w~~~Yyg-~N~~RL~~vK~~yDP~n~F~~~ 507 (518)
T 3vte_A 430 KHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFG-KNFNRLVKVKTKVDPNNFFRNE 507 (518)
T ss_dssp HHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHHHHHHHSS-THHHHHHHHHHHHCTTCCSCCT
T ss_pred HHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhhHHHHHhH-hHHHHHHHHHhhcCchhcccCC
Confidence 446677888888766443444544321111 11 011245566677 4789999999999999999743
No 28
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=37.04 E-value=23 Score=35.60 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=39.1
Q ss_pred HHHHHHHHHhhcCCCccccCCCcccc----CCCC--------Cc----cccccccccCChHHHHHHHHHHHhcCCCCCCC
Q psy4129 283 GVELYQSTKRQLDPKNVFANGGSISH----HHGV--------GK----LRSHWYPKQVSSVGVELYQSTKRQLDPKNIFA 346 (355)
Q Consensus 283 ~~~~mr~iK~a~DP~~IlNpGg~is~----eHGi--------G~----~k~~~l~~~~g~~~~~lm~~iK~~fDP~gilN 346 (355)
.++.++++.+.+.|..--+|++...- .-|. |. ..+.|-...|+ ..++=+++||+.+||.|+|+
T Consensus 408 ~~~w~~~~~~~~~p~~~~~~~~~Y~Ny~d~dl~~~~~~~~~~~~~~~~~~~~w~~~Yyg-~n~~RL~~vK~~yDP~n~F~ 486 (495)
T 3fw9_A 408 FLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFL-SNYERLIRAKTLIDPNNVFN 486 (495)
T ss_dssp HHHHHHHHHHHHGGGSCCSSCCCCGGGCCGGGCCCCTTCHHHHHTHHHHHHHHHHHHHG-GGHHHHHHHHHHHCTTCCSC
T ss_pred HHHHHHHHHHHHhhhccCCCcccccCccCccccccccccccccccccchhhhhHHHHhH-hHHHHHHHHHHhhCcHhhCC
Confidence 35667777777766433344443311 1111 00 01234444555 46899999999999999997
Q ss_pred CCC
Q psy4129 347 NGN 349 (355)
Q Consensus 347 PGk 349 (355)
-.-
T Consensus 487 ~~q 489 (495)
T 3fw9_A 487 HPQ 489 (495)
T ss_dssp CTT
T ss_pred CCC
Confidence 543
No 29
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=29.93 E-value=16 Score=36.57 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=23.7
Q ss_pred ccccccCChHHHHHHHHHHHhcCCCCCCCCC
Q psy4129 318 HWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348 (355)
Q Consensus 318 ~~l~~~~g~~~~~lm~~iK~~fDP~gilNPG 348 (355)
+|....||+ .++=+++||+.+||.|+|+-.
T Consensus 444 ~~~~~~yG~-n~~RL~~iK~kyDP~~vF~~~ 473 (503)
T 1zr6_A 444 EAQKLYWRG-NLEKLQAIKAKYDPEDVFGNV 473 (503)
T ss_dssp HHHHHHHGG-GHHHHHHHHHHHCTTCTTCCT
T ss_pred hHHHHHHHh-HHHHHHHHHHHhCchhhcCCC
Confidence 344556675 689999999999999999643
No 30
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=29.13 E-value=13 Score=24.96 Aligned_cols=16 Identities=38% Similarity=0.684 Sum_probs=12.7
Q ss_pred eeeeecchHHHHHHHH
Q psy4129 123 ETSVPWDKAILLCTNV 138 (355)
Q Consensus 123 D~aVP~s~l~~~~~~v 138 (355)
++.|||++|..+++..
T Consensus 3 ~l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 3 DLTVPWDDIEALLKNN 18 (41)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH
Confidence 5679999998887654
No 31
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=28.03 E-value=2.5e+02 Score=23.07 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=34.2
Q ss_pred CCccchHHHHHHHHHHHHHHcCCeeEEecccCccccc---cccccCChhHHHHHHHHHhhc
Q psy4129 237 KDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSH---WYPKQVSSVGVELYQSTKRQL 294 (355)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~GGtisghHGvG~~h~~---~l~~~~g~~~~~~mr~iK~a~ 294 (355)
.++.+.++++.+.+.+.+.++.||++--- .|+.... -.+++...+-.....++++.|
T Consensus 91 gddlea~ekalkemirqarkfagtvtytl-~gn~l~i~itgvpeqvrkelakeaerl~~ef 150 (170)
T 4hhu_A 91 GDDLEALEKALKEMIRQARKFAGTVTYTL-SGNRLVIVITGVPEQVRKELAKEAERLKAEF 150 (170)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCEEEEEE-CSSEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhhcceEEEEE-eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 56788888888888888999999887643 2332211 122222222222345777777
No 32
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=24.39 E-value=34 Score=34.02 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=23.1
Q ss_pred ccccccCChHHHHHHHHHHHhcCCCCCCCCC
Q psy4129 318 HWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348 (355)
Q Consensus 318 ~~l~~~~g~~~~~lm~~iK~~fDP~gilNPG 348 (355)
+|....++ ..++=+++||+.+||+|+|+-.
T Consensus 437 ~~~~~yyg-~n~~RL~~vK~kyDP~n~F~~~ 466 (473)
T 3rja_A 437 YATKVYYG-ENLARLQKLKAKFDPTDRFYYP 466 (473)
T ss_dssp HHHHHHHG-GGHHHHHHHHHHHCTTCTTCCT
T ss_pred hHHHHHHH-HHHHHHHHHhhccCchhhCCCC
Confidence 34445555 4688899999999999999743
No 33
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=23.91 E-value=34 Score=34.52 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=23.0
Q ss_pred cccccCChHHHHHHHHHHHhcCCCCCCCCCC
Q psy4129 319 WYPKQVSSVGVELYQSTKRQLDPKNIFANGN 349 (355)
Q Consensus 319 ~l~~~~g~~~~~lm~~iK~~fDP~gilNPGk 349 (355)
|....++ +.++=+++||+.+||+|+|+-..
T Consensus 490 ~~~~yyg-~n~~RL~~iK~kyDP~~vF~~~q 519 (523)
T 2wdx_A 490 WHDLYYK-GNHPRLRKVKAAYDPRNHFHHAL 519 (523)
T ss_dssp HHHHHHG-GGHHHHHHHHHHHCTTCCSCCTT
T ss_pred HHHHHHH-HHHHHHHHHHHHhCcHhhcCCCC
Confidence 4344455 46899999999999999997543
No 34
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=20.86 E-value=34 Score=34.34 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=22.8
Q ss_pred cccccCChHHHHHHHHHHHhcCCCCCCCCC
Q psy4129 319 WYPKQVSSVGVELYQSTKRQLDPKNIFANG 348 (355)
Q Consensus 319 ~l~~~~g~~~~~lm~~iK~~fDP~gilNPG 348 (355)
|-...+| +.++=+++||+.+||+|+|+-.
T Consensus 468 w~~~Yyg-~N~~RL~~vK~kyDP~n~F~~~ 496 (501)
T 3pop_A 468 WHHLYYK-DNYARLRSAKRAWDPLNTFHHS 496 (501)
T ss_dssp HHHHHHG-GGHHHHHHHHHHHCTTCCSCCT
T ss_pred HHHHHhH-hHHHHHHHHHHHhCcccccCCC
Confidence 4444556 4788899999999999999743
Done!