RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4129
(355 letters)
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 205 bits (523), Expect = 2e-61
Identities = 60/300 (20%), Positives = 105/300 (35%), Gaps = 57/300 (19%)
Query: 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLL 63
P+ IR+ D + + + +P G + + Y+ I+ F +C++ +
Sbjct: 339 RSSEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIG 398
Query: 64 FEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFE 123
FEG + V ++ ++ I K G G + + YIRD LD+++ + E
Sbjct: 399 FEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAE 458
Query: 124 TSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKD 183
T+V + L + KQ
Sbjct: 459 TTVSYANLQTLWKDAKQTFV---------------------------------------- 478
Query: 184 PIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSY 243
+H I A + ++ TY G C+YF F + + Y
Sbjct: 479 --------KHFKDQGIPAWIC--------AHISHTYTNGVCLYFIFASK-QNENKDMAQY 521
Query: 244 DYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
+ D I GGS+SHHHGVG W + + + +Y+S K +DPK++
Sbjct: 522 IEAKKLMTDIIFKYGGSLSHHHGVGYEHVPWMTRYATRGWINVYRSLKETIDPKDICNPR 581
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 47.9 bits (115), Expect = 3e-06
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 299 VFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIF 345
V GGSIS HG+G ++ + +EL +S K LDP I
Sbjct: 424 VLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHGIM 470
Score = 47.6 bits (114), Expect = 4e-06
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 246 IEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKN 298
+ + ++ GGSIS HG+G ++ + +EL +S K LDP
Sbjct: 416 VSQVVFEVVLRLGGSISAEHGIGVMKRDELAEVKDKTAIELMRSIKALLDPHG 468
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 0.001
Identities = 38/254 (14%), Positives = 82/254 (32%), Gaps = 81/254 (31%)
Query: 23 FGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPEDVKKNQAKIY--- 79
+S+R + D K + K+ ++ E + L +P + +K +
Sbjct: 333 IAESIRDGLATW----DNWKHVNCDKLT--TIIESSLNVL----EPAEYRKM----FDRL 378
Query: 80 SIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAE---SFETSVPWDKAILLCT 136
S+ IP + + ++ + + + Y ++ + S+P + L
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKV 437
Query: 137 NVKQRVARECKVMNVEHYLISCRVTQTYDAGCC--------IYFYFGY------------ 176
++ A + V+HY + +T+D+ Y + G+
Sbjct: 438 KLENEYALHRSI--VDHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 177 ---------NFMGQK--------DPIGS----------Y-DYI-EHCARDE-----IIAC 202
F+ QK + GS Y YI ++ + E I+
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 203 VMNVEHYLISCRVT 216
+ +E LI + T
Sbjct: 552 LPKIEENLICSKYT 565
Score = 34.4 bits (78), Expect = 0.068
Identities = 46/331 (13%), Positives = 99/331 (29%), Gaps = 95/331 (28%)
Query: 14 RLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMC---VTTLLFEGDPED 70
RL+ + ++ L L+L ++ F++ C +TT F+ +
Sbjct: 236 RLLKSKPYE--NCL--------LVLLNVQNAKA--WNAFNLS--CKILLTTR-FKQVTDF 280
Query: 71 VKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDL---ALDYH-----ILAESF 122
+ S+ + E + +L ++ +DL L + I+AES
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEV---KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 123 -ETSVPWD-----------KAILLCTNV-----KQRVARECKVMNVEHYLISCRVTQTY- 164
+ WD I NV +++ V I +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIW 396
Query: 165 -----------DAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIAC----VMN---V 206
Y + +K P S I + + ++ V
Sbjct: 397 FDVIKSDVMVVVNKLHKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 207 EHYLISCRVTQTYDAGCC--------IYFYFGYNF----MGQKDPIGS-----YDYIEHC 249
+HY + +T+D+ Y + G++ ++ + + ++E
Sbjct: 451 DHY----NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 250 ARDEIIACGGSISHHHGVGKLRSHWYPKQVS 280
R + A S S + + +L+ Y +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKF--YKPYIC 535
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 31/213 (14%), Positives = 59/213 (27%), Gaps = 99/213 (46%)
Query: 63 LFEGDPEDVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAY---IRDLALDYHILA 119
LF V + A++ +I FGG G T+ Y +RDL YH+L
Sbjct: 145 LFRA----VGEGNAQLVAI---FGG--QGNTD-----------DYFEELRDLYQTYHVLV 184
Query: 120 ESFETSVPWDKAILLCTNVKQRVARE---CKVMNVE------------------------ 152
A L ++ + E + +N+
Sbjct: 185 GDLIKFS----AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 153 -------HYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIE---HCARDEIIAC 202
HY+++ ++ G+ P Y++ ++ + A
Sbjct: 241 IGVIQLAHYVVTAKLL-------------GFT------PGELRSYLKGATGHSQGLVTAV 281
Query: 203 VM-----------NVEHYL-----ISCRVTQTY 219
+ +V + I R + Y
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 38.9 bits (91), Expect = 0.002
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 310 HGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348
+ V + V +L + KR +DP NI A G
Sbjct: 472 YRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPG 510
Score = 36.5 bits (85), Expect = 0.011
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 9/61 (14%)
Query: 248 HCARDEIIA-----CGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
+E++ + V + V +L + KR +DP N+ A
Sbjct: 454 DACFNELLDEFEKEGYAV----YRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAP 509
Query: 303 G 303
G
Sbjct: 510 G 510
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 31.4 bits (71), Expect = 0.43
Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 310 HGVGKLRSHWYPKQVSSVG---VELYQSTKRQLDPKNIFANG 348
+ + + + + K +DP I A G
Sbjct: 503 YRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPG 544
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 28.5 bits (63), Expect = 3.5
Identities = 18/120 (15%), Positives = 28/120 (23%), Gaps = 27/120 (22%)
Query: 250 ARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHH 309
+ I + S Y + + + T L V
Sbjct: 314 ETLAPVLQTCEIRTVAADAQWLSPAYGRDTVAAHFTWVEDTAAVLP---VVRRLEEALVP 370
Query: 310 HGVGKLRSHW--------------YPKQVSSVGVELYQSTKRQLDPKNIFANGNLLRSHL 355
R HW YP+ + + + LDP F N +R L
Sbjct: 371 FAA---RPHWGKVFTVPAGELRALYPR------LADFGALAGALDPAGKFTN-AFVRGVL 420
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 28.7 bits (63), Expect = 3.6
Identities = 14/162 (8%), Positives = 40/162 (24%), Gaps = 15/162 (9%)
Query: 130 KAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYD 189
++ K+ + + N +++ RV G Y + PI ++
Sbjct: 105 QSFFTKMAKKKSLMDIPESQNERDFVL--RVC-----GRDEYLV-------GETPIKNFQ 150
Query: 190 YIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHC 249
++ C ++ ++ + + + G ++ I D+
Sbjct: 151 WVRQCLKNGEEIHLVLDTPPDPALDEVRKEEWPLVDDC-TGVTGYHEQLTIHGKDHESVF 209
Query: 250 ARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTK 291
G+ V + +
Sbjct: 210 TVSLWDCDRKFRVKIRGIDIPVLPRTADLTVFVEANIQYGQQ 251
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 28.5 bits (63), Expect = 4.3
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 20/66 (30%)
Query: 256 ACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGSISHHHGVGKL 315
G H VG H Y + + Y R+ DP N N G+GK
Sbjct: 520 QRGAQYPAEHNVG----HLY--KAPETLQKFY----RENDPTNSM-NP-------GIGKT 561
Query: 316 --RSHW 319
R +W
Sbjct: 562 SKRKNW 567
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.447
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,798,703
Number of extensions: 352709
Number of successful extensions: 802
Number of sequences better than 10.0: 1
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 20
Length of query: 355
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 260
Effective length of database: 4,049,298
Effective search space: 1052817480
Effective search space used: 1052817480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.5 bits)