RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4129
(355 letters)
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 279
Score = 74.0 bits (181), Expect = 1e-15
Identities = 33/308 (10%), Positives = 61/308 (19%), Gaps = 73/308 (23%)
Query: 4 MVQRCQPSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLL 63
+ P+S+ + L I +++ +
Sbjct: 27 RMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEP--GHTPDSVIKQMQKDTGMGAWNLYAA 84
Query: 64 FEGDPEDVKKNQAKIYSIALKFGGI-------PAGETNGMRGYMLTFVIAYIRDLALDYH 116
G E V N + + K G L + +++ L
Sbjct: 85 LYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNW 144
Query: 117 ILAESFETSVPWDKAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFG- 175
P + ++ RV Y F
Sbjct: 145 RGGGGSMWFAPV-------------SEARGSEC-KKQAAMAKRVLHKYGLDYVAEFIVAP 190
Query: 176 YNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMG 235
+ H++I
Sbjct: 191 RDM-----------------------------HHVIDV-----------------LYDRT 204
Query: 236 QKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLD 295
+ D + DE G + V + V +L + KR +D
Sbjct: 205 NPEETKRADACFNELLDEFEKEGY---AVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVD 261
Query: 296 PKNVFANG 303
P N+ A G
Sbjct: 262 PNNILAPG 269
Score = 51.3 bits (122), Expect = 5e-08
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 304 GSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348
+ V + V +L + KR +DP NI A G
Sbjct: 225 KEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPG 269
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus
(Penicillium simplicissimum) [TaxId: 69488]}
Length = 287
Score = 69.8 bits (170), Expect = 4e-14
Identities = 24/294 (8%), Positives = 53/294 (18%), Gaps = 55/294 (18%)
Query: 10 PSSIRLMDNAQFKFGQSLRPVPGYFGLLLDGLKRIYITKIKGFSVDEMCVTTLLFEGDPE 69
+ + + + + L + KI G
Sbjct: 33 QNVPTIRHILLDAAVLGDKRS---YSSRTEPLSDEELDKIAKQLNLGRWNFYGALYGPEP 89
Query: 70 DVKKNQAKIYSIALKFGGIPAGETNGMRGYMLTFVIAYIRDLALDYHILAESFETSVPWD 129
+ I G+ + + E +
Sbjct: 90 IRRVLWETIKDAFSAIPGVKFYFPEDTPENSV---LRVRDKTMQGIPTYDELKWIDWLPN 146
Query: 130 KAILLCTNVKQRVARECKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYD 189
A L + + + + + Y ++ + Q F G
Sbjct: 147 GAHLFFSPIAKVSGEDA----MMQYAVTKKRCQEAGLDFIGTFTVG-------------- 188
Query: 190 YIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHC 249
+N ++
Sbjct: 189 ------------------------------MREMHHIVCIVFN-KKDLIQKRKVQWLMRT 217
Query: 250 ARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANG 303
D+ A G H + +S + + K +DP + A G
Sbjct: 218 LIDDCAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPG 271
Score = 59.1 bits (142), Expect = 1e-10
Identities = 11/50 (22%), Positives = 16/50 (32%)
Query: 299 VFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFANG 348
ANG H + +S + + K +DP I A G
Sbjct: 222 CAANGWGEYRTHLAFMDQIMETYNWNNSSFLRFNEVLKNAVDPNGIIAPG 271
>d1f0xa1 d.58.32.2 (A:274-567) D-lactate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 294
Score = 38.6 bits (89), Expect = 8e-04
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 20/76 (26%)
Query: 246 IEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFANGGS 305
++ + + G H VG L E Q R+ DP N
Sbjct: 237 LKEQMLELLQQRGAQYPAEHNVGHLYKAP----------ETLQKFYRENDPTNSM----- 281
Query: 306 ISHHHGVGKL--RSHW 319
+ G+GK R +W
Sbjct: 282 ---NPGIGKTSKRKNW 294
Score = 37.8 bits (87), Expect = 0.001
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 10/49 (20%)
Query: 297 KNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIF 345
+ + G H VG L E Q R+ DP N
Sbjct: 243 ELLQQRGAQYPAEHNVGHLYKAP----------ETLQKFYRENDPTNSM 281
>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria
monocytogenes [TaxId: 1639]}
Length = 328
Score = 29.9 bits (66), Expect = 0.48
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 2/118 (1%)
Query: 146 CKVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACV-- 203
+ V L ++T + G + + P+G Y E+ E+
Sbjct: 159 ISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGH 218
Query: 204 MNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSI 261
I + T G + F ++ + II ++
Sbjct: 219 SFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPETL 276
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid
dehydrogenase, PP module {Thermus thermophilus [TaxId:
274]}
Length = 362
Score = 28.3 bits (62), Expect = 1.4
Identities = 22/162 (13%), Positives = 38/162 (23%), Gaps = 12/162 (7%)
Query: 142 VARECKVMNVEHYLISCRVTQTYDAGCCI-YFYFGYNFMGQKDPIGSYDYIEHCARDEII 200
A + V D +Y G NF + A +
Sbjct: 147 PAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGA-----PAVFIAENNFY 201
Query: 201 ACVMNVEHYLISCRVTQTYDAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGS 260
A ++ H S + A + + + Y+ A + G
Sbjct: 202 AISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVL------ASYYVVKEAVERARRGEGP 255
Query: 261 ISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNVFAN 302
V + H S + + R+ DP F
Sbjct: 256 SLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRR 297
Score = 26.8 bits (58), Expect = 4.1
Identities = 24/180 (13%), Positives = 39/180 (21%), Gaps = 6/180 (3%)
Query: 168 CCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACVMNVEHYLISCRVTQTYDAGCCIYF 227
NF PI H A M + T A +
Sbjct: 124 PEHPGSKALNFFTVASPI-----ASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDW 178
Query: 228 YFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQVSSVGVELY 287
Y G NF + + + + + S V + V
Sbjct: 179 YAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLAS 238
Query: 288 QSTKRQLDPKNVFANGGSISHHHGVGKLRSHWYPKQVSSVGVELYQSTKRQLDPKNIFAN 347
++ + G V + H S + + R+ DP F
Sbjct: 239 YYVVKEAV-ERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIPRFRR 297
>d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 311
Score = 26.2 bits (56), Expect = 6.4
Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 3/91 (3%)
Query: 220 DAGCCIYFYFGYNFMGQKDPIGSYDYIEHCARDEIIACGGSISHHHGVGKLRSHWYPKQV 279
D+ +Y++ G + + S+D + + S+ +
Sbjct: 78 DSPVLVYYHGGGFVICSIE---SHDALCRRIARLSNSTVVSVDYRLAPEHKFPAAVYDCY 134
Query: 280 SSVGVELYQSTKRQLDPKNVFANGGSISHHH 310
+ + + ++DP +F G S +
Sbjct: 135 DATKWVAENAEELRIDPSKIFVGGDSAGGNL 165
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.447
Gapped
Lambda K H
0.267 0.0440 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,448,415
Number of extensions: 69697
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 17
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.9 bits)