BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4130
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 76/112 (67%)
Query: 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL 141
+EE EAE+ K GN M+ + E AV Y KAI+ + +N VY+CNRAA+ +KL NY
Sbjct: 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
A++DC+ AI IDP Y+KAYGRMGLA + +N + A+ Y KA ELDP++ Y
Sbjct: 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
E++K K+ GN AM + + +A+ Y++A+ +NP+Y NRAA+ + ++ A D +
Sbjct: 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
+A +DP Y+KA+ R+GLA M DYK A EAY K E + N
Sbjct: 70 LATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 63/102 (61%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE +KNLGN +Q ++A+ Y KA++ D +N + N + K +Y+ A+ Q
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
A+++DP+ AKA+ R G AY + DY+ A+E Y KA ELDPN+
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + NLGN +Q ++A+ Y KA++ D +N + R + K +Y+ A+ D Q
Sbjct: 43 ASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQK 102
Query: 149 AIKIDPHYAKAYGRMGLA 166
A+++DP+ AKA +G A
Sbjct: 103 ALELDPNNAKAKQNLGNA 120
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
KN GN Q+ QA+ Y++AI + + Y NRAA KL ++LAL+DC+ I++
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
+P + K Y R A M DY A++ Y KA +LD +
Sbjct: 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 60/102 (58%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ D +N + N + K +Y A+ Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
A+++DP+ A+A+ +G AY + DY A+E Y KA ELDPN+
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ D + + N + K +Y A+ Q
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
A+++DP A+A+ +G AY + DY A+E Y KA ELDP
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ D + + N + K +Y A+ Q
Sbjct: 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
A+++DP A+A+ +G AY + DY A+E Y KA ELDP
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A++ KN GN ++ A+ Y++A+ D N + Y NRAA KL ++ AL DC
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
I++D + K Y R M ++ A AY A ++DP++
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
AE+ K N + E A+ YS+AI+ + SN +YY NR+ + + + Y AL D
Sbjct: 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
AI++D Y K Y R + + ++AAL Y ++ P+D
Sbjct: 65 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%)
Query: 81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
P + AE+ K N + E A+ YS+AI+ + SN +YY NR+ + + + Y
Sbjct: 5 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG 64
Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
AL D AI++D Y K Y R + + ++AAL Y ++ P+D
Sbjct: 65 YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%)
Query: 81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
P + AE+ K N + E A+ YS+AI+ + SN +YY NR+ + + + Y
Sbjct: 13 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG 72
Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
AL D AI++D Y K Y R + + ++AAL Y ++ P+D
Sbjct: 73 YALNDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 122
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ +N + N + K +Y A+ Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
A+++ P+ A+A+ +G AY + DY A+E Y KA EL PN+
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN 110
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A+ NL N +Q E+AV Y KA++ + N A+ + + AL +
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
AI+I P +A AY MG +M D + AL+ YT+A +++P
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + NL + QQ K ++A++ Y +AI + Y N + ++++ + AL+
Sbjct: 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 102
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
AI+I+P +A A+ + + + A+ +Y A +L P+ P
Sbjct: 103 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFP 145
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 21 LRDTLNAESKEG-IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNIN 78
L + N + ++G IE AV KA ++ P+ SN+ Q ++ ++ + I
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN 138
SPT A+ Y N+GNT + + A+ Y++AI + + + N A+ + N
Sbjct: 72 ISPTF-----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 139 YKLALRDCQIAIKIDPHYAKAY 160
A+ + A+K+ P + AY
Sbjct: 127 IPEAIASYRTALKLKPDFPDAY 148
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
K+LGN A +Q E+A + Y KAI+ D SN +Y N+AA + K + ++ C+ A+++
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 153 DPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKA 183
AKA R G A+ + ND A++ + ++
Sbjct: 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%)
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
K GN A+ + A+ YS+AI D N V Y NR+A+ K +Y+ A D + +
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
P + K Y R A +N ++ A Y + + + N+P
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 106
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK 174
A+D NS +Y N + K +Y A+ Q A+++DP+ A+A+ +G AY + DY
Sbjct: 2 AMDPGNSAEAWY-NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 175 AALEAYTKAAELDPND 190
A+E Y KA ELDPN+
Sbjct: 61 EAIEYYQKALELDPNN 76
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 75 SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAI-----------DCDNSN- 122
++++ +++ + +E KN+GNT + E A+ +Y+K + D D +
Sbjct: 209 ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL 268
Query: 123 -PVYYC---NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
PV N A K+ +++ A+ C A++IDP KA R + + +Y AL
Sbjct: 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328
Query: 179 AYTKAAELDPND 190
KA E+ P D
Sbjct: 329 DLKKAQEIAPED 340
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
EE ++E ++Y + D P AV Y++ I + Y NRAA+ KL ++ A
Sbjct: 5 EEARLEGKEY------FTKSDWP-NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 57
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE----AYTKAAELD 187
+ DC AI+ DP++ +AY R A + +Y +ALE A TK AE++
Sbjct: 58 IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 106
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 77 INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
+N EE ++E ++Y + D P AV Y++ I + Y NRAA+ KL
Sbjct: 134 VNPEKAEEARLEGKEY------FTKSDWP-NAVKAYTEMIKRAPEDARGYSNRAAALAKL 186
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE----AYTKAAELD 187
++ A+ DC AI+ DP++ +AY R A + +Y +ALE A TK AE++
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN 241
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154
LG T M P A+ K + D ++ Y ++N + + A+ Q AI ++
Sbjct: 45 LGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT 104
Query: 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
YA AY ++GL Y M ++ A+EAY K + P
Sbjct: 105 VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE Y LG+ D+ + A+ +AI + Y + + + A+ +
Sbjct: 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEK 132
Query: 149 AIKIDPHYAKAYGRMGLAY 167
I I P + +AY +GLAY
Sbjct: 133 TISIKPGFIRAYQSIGLAY 151
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+A K K LGN A ++ + A+ Y KA + D +N Y N+AA + +Y C+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 148 IAIKID-------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
AI++ AKAY R+G +Y + YK A+ Y K+
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
K +Y A+ Q A+++DP A+A+ +G AY + DY A+E Y KA ELDP
Sbjct: 15 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
A+A+ +G AY + DY A+E Y KA ELDP
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 34
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A++ K GN K +A Y +AI + VYY NRA K++ + AL DC+
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAAL----EAYTKAAE 185
A+++D KA+ +G +M Y A+ AY+ A E
Sbjct: 64 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+A K K LGN A ++ + A+ Y KA + D +N Y N+AA + +Y C+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 148 IAIKID-------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
AI++ AKAY R+G +Y + YK A+ Y K+
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A++ K GN K +A Y +AI + VYY NRA K++ + AL DC+
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAAL----EAYTKAAE 185
A+++D KA+ +G +M Y A+ AY+ A E
Sbjct: 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
+LGN + E+A Y KAI+ + V + N N LA+ + A+ +D
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
P++ AY +G + + A+ AY +A L PN +
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 34/135 (25%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAI---------------------DCDNS------ 121
AE Y NLGN ++ + ++A+ Y A+ D + +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 122 ----NPVYYCNRAASNNKLKNYKLA--LRDCQI-AIKIDPHYAKAYGRMGLAYTQMNDYK 174
NP YC R+ N LK + C + AI+ P++A A+ +G + +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 175 AALEAYTKAAELDPN 189
A+ + KA LDPN
Sbjct: 187 LAIHHFEKAVTLDPN 201
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A+ NL N +Q E+AV Y KA++ + N A+ + + AL +
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMND 172
AI+I P +A AY MG +M D
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQD 388
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 45/103 (43%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + NLG Q + A+ + KA+ D + Y N + + + A+
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
A+ + P++A +G + Y + A++ Y +A EL P+ P
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
+AIK +P A+AY +G Y + + A+E Y A L P+
Sbjct: 58 LAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
pdb|3FWV|B Chain B, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy),
In Complex With Meevf Peptide
Length = 128
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+A K K LGN A ++ + A+ Y KA + D +N Y N+AA + +Y C+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCE 62
Query: 148 IAIKIDPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKA 183
AI++ A AY R+G +Y + YK A+ Y K+
Sbjct: 63 KAIEVGRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKS 105
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAI-----DCDNSNP----------VYYCNRAASNNKLK 137
K G ++ K +QA+++Y K + + SN + N A + KL+
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
+ A+ C A+++D + K R G A+ +ND++ A + K +L PN+
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA 149
EK K GN+ +Q +AV Y + I NPV Y N+A + KL Y A++ CQ
Sbjct: 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64
Query: 150 IK 151
++
Sbjct: 65 LR 66
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAI-----DCDNSNP----------VYYCNRAASNNKLK 137
K G ++ K +QA+++Y K + + SN + N A + KL+
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
+ A+ C A+++D + K R G A+ +ND++ A + K +L PN+
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNN 263
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN---YKLALRDCQIAIK 151
LG T +Q K + AV I +NP+ + R LKN + A+ +IA+
Sbjct: 82 LGLTYVQVQKYDLAV---PLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIALG 138
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
+ P+ K + + +Y QM ++ AL + KA ELD
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 113 SKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172
S+A+ D + Y R + L LA D A+ I P + + +G+ TQ +
Sbjct: 34 SRALTDDERAQLLY-ERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGN 92
Query: 173 YKAALEAYTKAAELDP 188
+ AA EA+ ELDP
Sbjct: 93 FDAAYEAFDSVLELDP 108
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-----------------YCNRAA 131
A++ K GN+ +++K E+A+ +Y AI + ++ + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238
Query: 132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
KLK Y A+ C I + + KA R G A ++ +A + + KA + P+D
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---AASNNKLKNYKLALRDCQIAIK 151
LG T +Q K + AV I +NP+ + R + + L + A+ +IA+
Sbjct: 82 LGLTYVQVQKYDLAV---PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
+ P+ K + + +Y QM ++ AL + KA ELD
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---AASNNKLKNYKLALRDCQIAIK 151
LG T +Q K + AV I +NP+ + R + + L + A+ +IA+
Sbjct: 82 LGLTYVQVQKYDLAV---PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
+ P+ K + + +Y QM ++ AL + KA ELD
Sbjct: 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 79 FSPTEEVKIE-AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------------DNSNP 123
+ T+E K++ A K GN ++++ +A+++Y +A+D N
Sbjct: 27 YDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNI 86
Query: 124 VYYCNR--AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
CN A NK K+Y A+ +KID + KA ++G+A + A E
Sbjct: 87 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146
Query: 182 KAAELDPND 190
KAA L+PN+
Sbjct: 147 KAASLNPNN 155
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + KN GN +A+ Y AI+ D + PV+Y N +A + + +
Sbjct: 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177
A++I P ++KA R A + ++ A+
Sbjct: 85 ALEIKPDHSKALLRRASANESLGNFTDAM 113
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
NR KN+ A++ Q AI++DP+ Y + Y D + +E TKA E+
Sbjct: 30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 89
Query: 188 PN 189
P+
Sbjct: 90 PD 91
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
Q A+ ++P Y Y G Y + DYK A E + KA L+P
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 27/170 (15%)
Query: 20 LLRDTLN---AESKEGIEVAVECLCKAYDIPDNIDPASNVD------------IESLFQL 64
LL D L + + EG VA + L K+ D+ ++ A+ VD +F
Sbjct: 195 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH- 253
Query: 65 YYKDEVLQ----WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
+ K+ +L +IN PT Y L T ++ ++ + KA+D +
Sbjct: 254 FLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307
Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG-LAYTQ 169
P Y +R L++YK A D Q A ++P Y ++ L Y Q
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + KN GN +A+ Y AI+ D + PV+Y N +A + + +
Sbjct: 21 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177
A++I P ++KA R A + ++ A+
Sbjct: 81 ALEIKPDHSKALLRRASANESLGNFTDAM 109
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
NR KN+ A++ Q AI++DP+ Y + Y D + +E TKA E+
Sbjct: 26 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK 85
Query: 188 PN 189
P+
Sbjct: 86 PD 87
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
Q A+ ++P Y Y G Y + DYK A E + KA L+P
Sbjct: 296 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 337
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 27/170 (15%)
Query: 20 LLRDTLN---AESKEGIEVAVECLCKAYDIPDNIDPASNVD------------IESLFQL 64
LL D L + + EG VA + L K+ D+ ++ A+ VD +F
Sbjct: 191 LLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH- 249
Query: 65 YYKDEVLQ----WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN 120
+ K+ +L +IN PT Y L T ++ ++ + KA+D +
Sbjct: 250 FLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADKENSQEFFKFFQKAVDLNP 303
Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG-LAYTQ 169
P Y +R L++YK A D Q A ++P Y ++ L Y Q
Sbjct: 304 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 353
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---AASNNKLKNYKLALRDCQIAIK 151
LG T +Q K + AV + +NPV + R + + L + A+ +IA+
Sbjct: 82 LGLTYVQVQKYDLAV---PLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALG 138
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
+ P+ K + + +Y QM ++ AL + KA ELD
Sbjct: 139 LRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELD 174
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
+AY MG AY ++ D++ AL Y A EL+P+ P
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 48 DNID--PASNVDIESLFQLYYKDEVLQWYSNINFSPTEE---VKIEAEKYKNLGNTAMQQ 102
DNI+ P S E ++++ Y DEV QWY+ N T E KI E N + +
Sbjct: 210 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLXSTLENAAFKISKE------NEGINK 263
Query: 103 DKP 105
D P
Sbjct: 264 DDP 266
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAID---------------CDNSNPVYYCNRAASNNKLK 137
K G + K QAVI+Y K + ++ + N A KL+
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
Y A+ C A+ +D K R G A MN++++A + K E++P +
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 48 DNID--PASNVDIESLFQLYYKDEVLQWYSNINFSPTEE---VKIEAEKYKNLGNTAMQQ 102
DNI+ P S E ++++ Y DEV QWY+ N T E KI E N + +
Sbjct: 210 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKE------NEGINK 263
Query: 103 DKP 105
D P
Sbjct: 264 DDP 266
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 15/113 (13%)
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAID---------------CDNSNPVYYCNRAASNNKLK 137
K G + K QAVI+Y K + ++ + N A KL+
Sbjct: 272 KEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
Y A+ C A+ +D K R G A MN++++A + K E++P +
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384
>pdb|4GOD|A Chain A, Crystal Structure Of The Sgta Homodimerization Domain
pdb|4GOD|B Chain B, Crystal Structure Of The Sgta Homodimerization Domain
pdb|4GOE|A Chain A, Crystal Structure Of The Sgta Homodimerization Domain
With A Covalent Modification Of A Single C38
pdb|4GOE|B Chain B, Crystal Structure Of The Sgta Homodimerization Domain
With A Covalent Modification Of A Single C38
pdb|4GOF|A Chain A, Crystal Structure Of The Sgta Homodimerization Domain
With Covalent Modifications To Both C38
pdb|4GOF|B Chain B, Crystal Structure Of The Sgta Homodimerization Domain
With Covalent Modifications To Both C38
Length = 52
Score = 31.6 bits (70), Expect = 0.59, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI 46
++I FL +L L+++++E +EVA++CL A+ +
Sbjct: 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 144 RDCQI----AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
R+C+ A++++P+ A+ + +G+ Y N+Y +A +A EL P+D
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALR 144
+A+ + LG T ++P++A+ Y++A+D NP Y N A S + + Y LA +
Sbjct: 205 DAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAK 261
Query: 145 DCQIAIKI 152
AI +
Sbjct: 262 QLVRAIYM 269
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 144 RDCQI----AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
R+C+ A++++P+ A+ + +G+ Y N+Y +A +A EL P+D
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALR 144
+A+ + LG T ++P++A+ Y++A+D NP Y N A S + + Y LA +
Sbjct: 205 DAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAK 261
Query: 145 DCQIAIKI 152
AI +
Sbjct: 262 QLVRAIYM 269
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 48 DNID--PASNVDIESLFQLYYKDEVLQWYSNINFSPTEE---VKIEAEKYKNLGNTAMQQ 102
DNI+ P S E ++++ Y DEV QWY+ N T E KI E N + +
Sbjct: 344 DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKE------NEGINK 397
Query: 103 DKP 105
D P
Sbjct: 398 DDP 400
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 112 YSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG-LAYTQ 169
+ KA+ D++N Y +R N L+NY A +D A ++DP Y ++ LAY +
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 88 EAEKY----KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143
E +KY K+ GN + K + A+ Y+ A++ +PV+Y N +A + + K +
Sbjct: 1 EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVV 59
Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177
A+++ P Y+K R A + + A+
Sbjct: 60 EMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93
>pdb|1OUV|A Chain A, Helicobacter Cysteine Rich Protein C (Hcpc)
Length = 273
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 106 EQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA 159
++A Y+KA D + SN +YY + S N K + + C D YA+
Sbjct: 59 KKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC------DLKYAEG 112
Query: 160 YGRMGLAYTQ----MNDYKAALEAYTKAAELDPNDP 191
+G Y D+K A+E +TKA +L+ D
Sbjct: 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDG 148
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%)
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
EE K +A Y N N ++ E+A+ Y KA++ D+S Y + YK A
Sbjct: 51 EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
+ A++ + +G ++ K AL +A EL+ ND
Sbjct: 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 97 NTAMQQDKPEQAVIEYSKAIDCD---NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
NT +QA+ Y++A D +SNP + NRA + ++Y AL A +D
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288
Query: 154 PHY 156
P +
Sbjct: 289 PAW 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,017,890
Number of Sequences: 62578
Number of extensions: 296335
Number of successful extensions: 817
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 631
Number of HSP's gapped (non-prelim): 148
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)