Query psy4130
Match_columns 314
No_of_seqs 397 out of 3222
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 17:42:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553|consensus 100.0 6.7E-28 1.5E-32 196.0 24.0 274 4-289 3-293 (304)
2 KOG4626|consensus 99.9 3.6E-24 7.8E-29 188.3 13.6 211 21-243 222-434 (966)
3 KOG4626|consensus 99.9 3.1E-23 6.7E-28 182.5 13.1 206 22-238 291-497 (966)
4 KOG1126|consensus 99.8 3.1E-20 6.7E-25 165.2 10.7 214 22-245 358-605 (638)
5 TIGR00990 3a0801s09 mitochondr 99.8 3.7E-19 8.1E-24 168.1 18.0 208 26-244 340-555 (615)
6 KOG1126|consensus 99.8 3E-19 6.5E-24 159.0 14.3 182 24-211 428-611 (638)
7 PRK12370 invasion protein regu 99.8 5.5E-19 1.2E-23 164.3 16.8 208 29-243 273-487 (553)
8 TIGR00990 3a0801s09 mitochondr 99.8 2.1E-18 4.6E-23 162.9 20.5 193 30-232 307-502 (615)
9 KOG0548|consensus 99.8 1.5E-17 3.3E-22 144.9 23.4 205 13-240 294-499 (539)
10 KOG1155|consensus 99.8 9.4E-19 2E-23 149.7 14.2 208 26-243 271-478 (559)
11 PRK15359 type III secretion sy 99.8 8.9E-18 1.9E-22 128.4 16.8 114 92-205 27-140 (144)
12 PRK09782 bacteriophage N4 rece 99.8 3.6E-17 7.7E-22 158.8 17.8 200 28-240 520-720 (987)
13 COG3063 PilF Tfp pilus assembl 99.8 8.7E-17 1.9E-21 126.5 16.4 151 23-211 41-193 (250)
14 PRK15174 Vi polysaccharide exp 99.7 6.4E-17 1.4E-21 153.1 17.8 209 25-243 84-330 (656)
15 KOG1125|consensus 99.7 5E-18 1.1E-22 149.0 9.5 210 25-244 293-555 (579)
16 PRK15174 Vi polysaccharide exp 99.7 9.1E-17 2E-21 152.0 18.6 146 92-243 215-364 (656)
17 KOG1155|consensus 99.7 8.5E-17 1.8E-21 137.9 16.1 179 28-210 341-526 (559)
18 TIGR02521 type_IV_pilW type IV 99.7 4.4E-16 9.5E-21 128.5 20.0 170 27-240 41-212 (234)
19 PRK11447 cellulose synthase su 99.7 1.3E-16 2.8E-21 160.4 18.7 212 24-242 276-540 (1157)
20 PRK11189 lipoprotein NlpI; Pro 99.7 1.5E-15 3.3E-20 130.4 20.4 124 87-211 62-185 (296)
21 PRK11788 tetratricopeptide rep 99.7 6.6E-16 1.4E-20 138.3 18.2 211 26-243 44-261 (389)
22 PRK15359 type III secretion sy 99.7 2.1E-16 4.5E-21 120.9 12.5 123 109-240 13-135 (144)
23 PRK11788 tetratricopeptide rep 99.7 2.4E-15 5.3E-20 134.6 21.0 207 27-241 117-326 (389)
24 PRK09782 bacteriophage N4 rece 99.7 6E-16 1.3E-20 150.4 18.1 177 26-211 551-731 (987)
25 KOG0547|consensus 99.7 1.7E-16 3.7E-21 136.9 11.9 172 14-189 323-494 (606)
26 PRK11447 cellulose synthase su 99.7 1E-15 2.2E-20 153.9 19.5 212 25-243 393-683 (1157)
27 PRK12370 invasion protein regu 99.7 4.4E-16 9.5E-21 145.0 15.5 161 78-244 284-454 (553)
28 TIGR02917 PEP_TPR_lipo putativ 99.7 8.4E-16 1.8E-20 151.0 18.0 209 25-244 473-682 (899)
29 COG3063 PilF Tfp pilus assembl 99.7 4.4E-15 9.6E-20 117.0 17.7 152 86-243 32-185 (250)
30 TIGR02917 PEP_TPR_lipo putativ 99.7 3.2E-15 6.9E-20 146.9 20.8 151 84-240 120-270 (899)
31 PRK15363 pathogenicity island 99.7 5.1E-15 1.1E-19 111.5 15.7 105 86-190 32-136 (157)
32 PRK10370 formate-dependent nit 99.7 7.7E-15 1.7E-19 118.1 17.4 109 84-192 68-179 (198)
33 PF13429 TPR_15: Tetratricopep 99.7 5E-16 1.1E-20 132.8 11.1 208 26-245 53-262 (280)
34 PLN02789 farnesyltranstransfer 99.7 1.1E-14 2.3E-19 125.3 19.2 151 87-243 69-229 (320)
35 PRK10370 formate-dependent nit 99.7 3.4E-15 7.4E-20 120.2 15.0 131 102-238 52-185 (198)
36 KOG2003|consensus 99.7 1.3E-14 2.8E-19 124.6 18.4 223 10-244 483-707 (840)
37 PRK11189 lipoprotein NlpI; Pro 99.7 6.8E-15 1.5E-19 126.4 17.1 154 29-186 38-194 (296)
38 TIGR03302 OM_YfiO outer membra 99.6 5.7E-15 1.2E-19 123.0 15.2 151 26-211 42-223 (235)
39 TIGR02552 LcrH_SycD type III s 99.6 8.1E-15 1.8E-19 111.2 14.1 118 83-200 11-128 (135)
40 PF13429 TPR_15: Tetratricopep 99.6 9.3E-16 2E-20 131.1 9.6 180 28-211 88-268 (280)
41 TIGR02521 type_IV_pilW type IV 99.6 2.8E-14 6.1E-19 117.7 17.9 152 87-244 29-182 (234)
42 PRK10049 pgaA outer membrane p 99.6 1.1E-14 2.5E-19 140.4 17.4 206 29-240 249-470 (765)
43 PLN03088 SGT1, suppressor of 99.6 1.9E-14 4.2E-19 126.3 16.6 115 92-206 5-119 (356)
44 COG5010 TadD Flp pilus assembl 99.6 5.2E-14 1.1E-18 113.2 17.3 173 32-211 48-222 (257)
45 KOG1173|consensus 99.6 5E-15 1.1E-19 130.0 11.9 210 24-243 319-535 (611)
46 KOG0553|consensus 99.6 6.4E-15 1.4E-19 120.6 11.7 116 124-245 82-197 (304)
47 KOG1125|consensus 99.6 1.1E-14 2.4E-19 128.3 12.6 186 23-209 325-560 (579)
48 TIGR03302 OM_YfiO outer membra 99.6 7.2E-14 1.6E-18 116.3 16.3 156 84-245 28-217 (235)
49 KOG2002|consensus 99.6 3.3E-14 7.2E-19 131.7 15.0 209 29-243 176-426 (1018)
50 TIGR02552 LcrH_SycD type III s 99.6 4.4E-14 9.6E-19 107.1 13.0 124 110-239 4-127 (135)
51 KOG0547|consensus 99.6 2.3E-13 4.9E-18 117.9 17.1 152 86-243 323-474 (606)
52 PRK15179 Vi polysaccharide bio 99.6 1.4E-13 3E-18 129.4 17.1 138 84-227 81-218 (694)
53 COG2956 Predicted N-acetylgluc 99.5 4.6E-13 1E-17 110.5 16.8 185 26-211 44-234 (389)
54 KOG2002|consensus 99.5 2.7E-13 5.8E-18 125.9 16.3 203 33-244 146-389 (1018)
55 KOG1129|consensus 99.5 2.2E-14 4.8E-19 118.4 7.0 139 84-229 319-460 (478)
56 PRK10049 pgaA outer membrane p 99.5 9.4E-13 2E-17 127.2 19.1 122 89-211 49-170 (765)
57 KOG0548|consensus 99.5 2.5E-13 5.4E-18 118.9 13.0 111 91-201 4-114 (539)
58 COG5010 TadD Flp pilus assembl 99.5 7.4E-13 1.6E-17 106.6 14.2 156 84-246 62-217 (257)
59 PLN02789 farnesyltranstransfer 99.5 3.2E-12 6.9E-17 110.1 18.5 154 85-244 33-189 (320)
60 KOG0550|consensus 99.5 4E-13 8.8E-18 114.1 12.3 155 23-204 209-367 (486)
61 KOG0543|consensus 99.5 8.1E-13 1.8E-17 112.7 13.7 127 85-211 204-345 (397)
62 PRK15363 pathogenicity island 99.5 9.1E-13 2E-17 99.4 12.2 112 115-232 26-138 (157)
63 PRK14574 hmsH outer membrane p 99.5 4.6E-12 1E-16 121.3 19.5 181 25-211 42-223 (822)
64 KOG1129|consensus 99.5 2.1E-13 4.5E-18 112.7 8.2 146 89-240 256-404 (478)
65 KOG2076|consensus 99.5 5.4E-12 1.2E-16 116.5 17.8 140 6-154 133-272 (895)
66 KOG0624|consensus 99.4 1.2E-11 2.7E-16 103.0 18.0 215 14-238 104-382 (504)
67 TIGR02795 tol_pal_ybgF tol-pal 99.4 5.2E-12 1.1E-16 93.3 14.4 107 89-195 2-114 (119)
68 KOG1173|consensus 99.4 2.2E-12 4.8E-17 113.6 12.5 185 30-224 257-441 (611)
69 KOG4234|consensus 99.4 7.8E-12 1.7E-16 96.6 13.6 120 86-205 92-216 (271)
70 KOG2076|consensus 99.4 1.3E-11 2.7E-16 114.1 17.3 137 86-228 136-272 (895)
71 PRK02603 photosystem I assembl 99.4 1.5E-11 3.3E-16 97.2 15.7 109 82-190 28-153 (172)
72 KOG3060|consensus 99.4 3.4E-11 7.4E-16 96.4 16.6 174 29-209 64-243 (289)
73 PF13414 TPR_11: TPR repeat; P 99.4 2.2E-12 4.8E-17 85.6 8.5 66 123-188 3-69 (69)
74 PRK15331 chaperone protein Sic 99.4 1.8E-11 3.9E-16 92.8 14.1 112 83-195 31-142 (165)
75 PRK15179 Vi polysaccharide bio 99.4 7.8E-12 1.7E-16 117.7 15.0 109 82-190 113-221 (694)
76 cd00189 TPR Tetratricopeptide 99.4 1.1E-11 2.4E-16 86.8 12.2 99 91-189 2-100 (100)
77 PF13414 TPR_11: TPR repeat; P 99.4 1.6E-12 3.5E-17 86.3 7.2 67 88-154 2-69 (69)
78 KOG4648|consensus 99.4 3.1E-12 6.8E-17 106.5 10.3 113 90-202 98-210 (536)
79 CHL00033 ycf3 photosystem I as 99.4 5.5E-11 1.2E-15 93.6 16.5 106 86-191 32-154 (168)
80 KOG0495|consensus 99.4 1.5E-11 3.2E-16 110.2 14.2 200 29-243 596-799 (913)
81 KOG2003|consensus 99.4 8.1E-12 1.8E-16 107.6 11.9 183 26-211 428-612 (840)
82 KOG0550|consensus 99.4 2.7E-12 5.9E-17 109.1 8.7 152 82-240 196-363 (486)
83 COG4783 Putative Zn-dependent 99.3 2.1E-10 4.5E-15 100.0 19.0 126 86-211 303-428 (484)
84 COG2956 Predicted N-acetylgluc 99.3 1.2E-10 2.6E-15 96.4 16.4 183 24-211 76-269 (389)
85 KOG0495|consensus 99.3 5.6E-11 1.2E-15 106.6 14.5 229 4-245 497-733 (913)
86 PLN03088 SGT1, suppressor of 99.3 3.6E-11 7.7E-16 105.8 13.2 111 126-242 5-115 (356)
87 KOG3060|consensus 99.3 4.7E-10 1E-14 90.0 17.8 151 84-240 81-232 (289)
88 KOG0624|consensus 99.3 1.1E-10 2.3E-15 97.5 14.7 181 25-211 46-243 (504)
89 PRK14574 hmsH outer membrane p 99.3 1.3E-10 2.8E-15 111.5 17.1 127 85-211 30-156 (822)
90 KOG1128|consensus 99.3 2E-11 4.4E-16 110.6 10.8 124 88-211 484-607 (777)
91 cd05804 StaR_like StaR_like; a 99.3 9.6E-11 2.1E-15 103.6 14.6 159 27-188 53-217 (355)
92 PF12895 Apc3: Anaphase-promot 99.3 1.3E-11 2.7E-16 85.3 6.9 81 102-183 2-84 (84)
93 COG4235 Cytochrome c biogenesi 99.3 1.3E-10 2.8E-15 96.1 13.7 119 105-229 138-259 (287)
94 PF13432 TPR_16: Tetratricopep 99.3 3E-11 6.4E-16 79.1 7.9 63 128-190 2-64 (65)
95 KOG4162|consensus 99.3 5.2E-10 1.1E-14 102.1 18.1 206 30-245 457-768 (799)
96 PRK10803 tol-pal system protei 99.3 3.8E-10 8.2E-15 94.4 16.1 108 89-196 142-256 (263)
97 KOG1840|consensus 99.3 6.6E-10 1.4E-14 100.3 18.6 165 27-227 209-397 (508)
98 TIGR02795 tol_pal_ybgF tol-pal 99.3 1.6E-10 3.5E-15 85.2 12.3 108 123-236 2-115 (119)
99 PF13432 TPR_16: Tetratricopep 99.3 3.5E-11 7.5E-16 78.8 7.6 65 93-157 1-65 (65)
100 COG4235 Cytochrome c biogenesi 99.2 2.3E-10 4.9E-15 94.7 13.8 112 82-193 149-263 (287)
101 PRK10747 putative protoheme IX 99.2 3.5E-10 7.6E-15 101.4 16.1 124 84-211 258-381 (398)
102 KOG4162|consensus 99.2 1.8E-10 4E-15 105.0 13.8 138 89-232 650-789 (799)
103 TIGR00540 hemY_coli hemY prote 99.2 2.9E-10 6.2E-15 102.4 15.2 124 87-211 261-390 (409)
104 PRK10747 putative protoheme IX 99.2 4E-10 8.6E-15 101.0 15.9 48 96-143 160-207 (398)
105 cd05804 StaR_like StaR_like; a 99.2 1.6E-10 3.4E-15 102.2 12.5 187 27-224 16-213 (355)
106 KOG1127|consensus 99.2 6.7E-11 1.5E-15 110.4 9.7 179 23-204 498-677 (1238)
107 COG4783 Putative Zn-dependent 99.2 8.3E-10 1.8E-14 96.3 15.8 124 119-248 302-425 (484)
108 KOG1174|consensus 99.2 1.7E-09 3.6E-14 92.5 17.1 210 25-242 240-482 (564)
109 PRK14720 transcript cleavage f 99.2 1E-09 2.2E-14 104.6 17.6 187 28-226 42-283 (906)
110 TIGR00540 hemY_coli hemY prote 99.2 2.9E-09 6.3E-14 95.9 18.3 118 121-244 261-383 (409)
111 PRK10153 DNA-binding transcrip 99.2 1.6E-09 3.5E-14 99.3 16.4 145 88-240 338-495 (517)
112 KOG1840|consensus 99.2 1.2E-09 2.5E-14 98.7 15.1 189 23-211 247-470 (508)
113 KOG1174|consensus 99.1 1.2E-09 2.6E-14 93.3 13.9 149 84-238 227-409 (564)
114 PRK10153 DNA-binding transcrip 99.1 1.3E-09 2.7E-14 100.0 14.7 133 29-192 354-488 (517)
115 KOG1156|consensus 99.1 1.5E-09 3.3E-14 97.4 14.6 125 87-211 39-163 (700)
116 PRK10866 outer membrane biogen 99.1 5.3E-09 1.2E-13 86.9 16.8 142 88-235 31-213 (243)
117 PF09976 TPR_21: Tetratricopep 99.1 2.3E-09 5E-14 82.2 13.6 95 89-184 48-145 (145)
118 cd00189 TPR Tetratricopeptide 99.1 6.5E-10 1.4E-14 77.6 9.6 87 125-211 2-88 (100)
119 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 7.3E-09 1.6E-13 91.2 16.5 89 93-181 204-292 (395)
120 PRK10866 outer membrane biogen 99.1 1.5E-08 3.2E-13 84.3 17.3 147 30-211 45-232 (243)
121 PRK11906 transcriptional regul 99.1 1.1E-08 2.3E-13 89.9 17.1 109 103-211 318-427 (458)
122 PF13525 YfiO: Outer membrane 99.1 7.3E-09 1.6E-13 84.0 15.2 143 88-236 4-180 (203)
123 CHL00033 ycf3 photosystem I as 99.1 1.7E-09 3.6E-14 85.2 11.0 110 102-211 12-133 (168)
124 KOG1156|consensus 99.1 6.4E-09 1.4E-13 93.5 15.6 123 89-211 7-129 (700)
125 KOG1127|consensus 99.1 9.8E-10 2.1E-14 102.8 10.7 176 30-211 471-650 (1238)
126 PF12895 Apc3: Anaphase-promot 99.1 3.7E-10 8E-15 77.9 6.0 83 30-149 2-84 (84)
127 PF09976 TPR_21: Tetratricopep 99.1 1.1E-08 2.4E-13 78.4 14.8 122 89-211 11-138 (145)
128 PRK11906 transcriptional regul 99.1 4E-09 8.7E-14 92.5 13.4 133 91-229 257-404 (458)
129 PF14559 TPR_19: Tetratricopep 99.0 8.8E-10 1.9E-14 72.7 7.1 64 101-164 3-66 (68)
130 PF13371 TPR_9: Tetratricopept 99.0 1.9E-09 4E-14 72.2 8.7 64 97-160 3-66 (73)
131 PF13371 TPR_9: Tetratricopept 99.0 1.8E-09 3.9E-14 72.3 8.7 71 129-199 1-71 (73)
132 KOG1128|consensus 99.0 8.7E-10 1.9E-14 100.2 9.0 147 85-243 453-599 (777)
133 PF13525 YfiO: Outer membrane 99.0 4.9E-09 1.1E-13 85.0 12.6 151 25-210 13-197 (203)
134 PF12688 TPR_5: Tetratrico pep 99.0 1.2E-08 2.6E-13 74.6 13.2 96 90-185 2-103 (120)
135 PF13512 TPR_18: Tetratricopep 99.0 1.5E-08 3.2E-13 75.4 13.7 105 89-193 10-135 (142)
136 PF14559 TPR_19: Tetratricopep 99.0 1.1E-09 2.5E-14 72.2 7.1 68 133-200 1-68 (68)
137 PRK14720 transcript cleavage f 99.0 3.9E-09 8.4E-14 100.8 13.0 127 82-211 24-169 (906)
138 PRK02603 photosystem I assembl 99.0 3E-09 6.4E-14 84.0 10.5 92 120-211 32-126 (172)
139 COG1729 Uncharacterized protei 99.0 1.5E-08 3.3E-13 83.0 14.5 109 90-198 142-256 (262)
140 KOG4555|consensus 99.0 3.1E-08 6.6E-13 71.6 14.1 103 88-190 42-148 (175)
141 KOG4642|consensus 99.0 1.5E-09 3.2E-14 86.3 8.1 100 87-186 8-107 (284)
142 PRK10803 tol-pal system protei 99.0 1.2E-08 2.7E-13 85.4 13.8 107 123-235 142-255 (263)
143 KOG0543|consensus 99.0 1.1E-08 2.5E-13 87.7 12.5 142 24-188 215-357 (397)
144 KOG0376|consensus 98.9 1.6E-09 3.6E-14 94.5 6.8 122 90-211 5-128 (476)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 2.5E-08 5.4E-13 87.8 14.2 113 96-211 176-288 (395)
146 KOG2376|consensus 98.9 6.5E-08 1.4E-12 86.3 16.4 191 28-233 23-260 (652)
147 KOG0545|consensus 98.9 3.4E-08 7.3E-13 79.1 13.2 111 82-192 171-299 (329)
148 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 6.6E-09 1.4E-13 91.1 9.8 72 82-153 68-142 (453)
149 PRK15331 chaperone protein Sic 98.9 9.2E-09 2E-13 78.2 9.2 112 117-235 31-142 (165)
150 COG4785 NlpI Lipoprotein NlpI, 98.9 4.1E-08 8.9E-13 77.3 12.2 151 85-242 61-211 (297)
151 KOG3785|consensus 98.9 1.3E-07 2.7E-12 79.8 15.7 147 91-243 59-231 (557)
152 PF12688 TPR_5: Tetratrico pep 98.9 3E-08 6.5E-13 72.5 10.7 88 124-211 2-95 (120)
153 PF06552 TOM20_plant: Plant sp 98.9 4E-08 8.6E-13 75.4 11.6 96 105-200 7-123 (186)
154 COG4700 Uncharacterized protei 98.9 2E-07 4.3E-12 71.8 15.0 134 90-230 90-226 (251)
155 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.4E-08 3.1E-13 89.1 9.6 69 118-186 70-141 (453)
156 KOG0551|consensus 98.9 2.5E-08 5.5E-13 83.1 10.5 104 87-190 79-186 (390)
157 PF12569 NARP1: NMDA receptor- 98.9 3.7E-07 8E-12 83.5 18.9 87 125-211 196-282 (517)
158 KOG1308|consensus 98.8 8E-09 1.7E-13 86.5 5.8 123 87-210 112-234 (377)
159 COG1729 Uncharacterized protei 98.8 7.5E-08 1.6E-12 79.0 11.3 103 126-234 144-252 (262)
160 PF04733 Coatomer_E: Coatomer 98.8 1.6E-07 3.5E-12 80.0 12.8 141 87-233 129-272 (290)
161 PF13424 TPR_12: Tetratricopep 98.7 3.3E-08 7.2E-13 67.0 6.6 67 86-152 2-75 (78)
162 KOG4648|consensus 98.7 2.5E-08 5.3E-13 83.6 6.8 109 126-240 100-208 (536)
163 KOG4234|consensus 98.7 1.9E-07 4.1E-12 72.7 10.7 105 23-160 101-205 (271)
164 PF13424 TPR_12: Tetratricopep 98.7 2E-08 4.3E-13 68.1 4.8 67 120-186 2-75 (78)
165 PF12569 NARP1: NMDA receptor- 98.6 1.2E-06 2.6E-11 80.3 15.3 123 89-211 194-325 (517)
166 PF04733 Coatomer_E: Coatomer 98.6 3.7E-07 7.9E-12 77.9 10.9 142 88-240 101-244 (290)
167 PLN03218 maturation of RBCL 1; 98.6 3.2E-06 6.8E-11 84.0 18.8 122 89-211 579-704 (1060)
168 KOG4340|consensus 98.6 1.2E-06 2.7E-11 72.4 12.9 136 91-232 46-214 (459)
169 COG4785 NlpI Lipoprotein NlpI, 98.6 2.9E-07 6.3E-12 72.6 8.4 113 122-240 64-178 (297)
170 PF13512 TPR_18: Tetratricopep 98.6 1.7E-06 3.8E-11 64.4 11.9 105 122-232 9-134 (142)
171 COG4105 ComL DNA uptake lipopr 98.5 9.3E-06 2E-10 66.3 15.4 140 88-233 33-203 (254)
172 COG4700 Uncharacterized protei 98.5 3.9E-05 8.4E-10 59.4 17.8 144 94-245 61-207 (251)
173 PLN03081 pentatricopeptide (PP 98.5 1.4E-06 3E-11 84.1 12.4 119 91-211 428-548 (697)
174 PLN03081 pentatricopeptide (PP 98.5 1.1E-05 2.4E-10 77.9 18.3 175 28-211 301-482 (697)
175 PF14938 SNAP: Soluble NSF att 98.5 3.7E-07 7.9E-12 78.0 7.2 124 87-211 73-216 (282)
176 COG4105 ComL DNA uptake lipopr 98.5 1.4E-05 3.1E-10 65.2 15.7 149 27-210 44-223 (254)
177 KOG4642|consensus 98.5 5E-07 1.1E-11 72.2 6.9 108 127-240 14-126 (284)
178 PF13428 TPR_14: Tetratricopep 98.5 5.3E-07 1.1E-11 53.6 5.4 39 126-164 4-42 (44)
179 PLN03218 maturation of RBCL 1; 98.4 1.7E-05 3.7E-10 78.9 18.4 121 89-211 542-669 (1060)
180 PF14938 SNAP: Soluble NSF att 98.4 1.1E-06 2.4E-11 75.1 8.8 140 85-231 31-189 (282)
181 PF13428 TPR_14: Tetratricopep 98.4 6.7E-07 1.5E-11 53.1 5.2 43 158-200 2-44 (44)
182 COG3071 HemY Uncharacterized e 98.4 2.1E-05 4.6E-10 67.5 16.0 57 153-210 324-380 (400)
183 KOG1130|consensus 98.4 2.7E-07 5.8E-12 79.3 4.3 125 87-211 193-335 (639)
184 KOG4555|consensus 98.4 8.2E-06 1.8E-10 59.2 10.5 85 127-211 47-135 (175)
185 KOG0545|consensus 98.4 2.4E-05 5.2E-10 63.1 14.1 124 1-159 169-300 (329)
186 KOG1070|consensus 98.4 2.6E-05 5.6E-10 76.5 16.6 200 29-238 1470-1675(1710)
187 KOG4340|consensus 98.3 8.3E-06 1.8E-10 67.6 11.3 136 98-239 19-186 (459)
188 PF13431 TPR_17: Tetratricopep 98.3 5.8E-07 1.3E-11 50.0 3.3 31 146-176 2-32 (34)
189 PF06552 TOM20_plant: Plant sp 98.3 4.9E-06 1.1E-10 64.1 9.4 58 104-161 50-118 (186)
190 PLN03077 Protein ECB2; Provisi 98.3 8.3E-06 1.8E-10 80.7 13.5 173 29-211 536-711 (857)
191 PLN03077 Protein ECB2; Provisi 98.3 3.9E-05 8.4E-10 76.0 18.1 115 92-211 527-645 (857)
192 PF13431 TPR_17: Tetratricopep 98.3 7.3E-07 1.6E-11 49.6 3.1 34 111-144 1-34 (34)
193 KOG2053|consensus 98.3 2.5E-05 5.3E-10 73.4 14.3 141 99-246 19-160 (932)
194 KOG1915|consensus 98.3 0.00012 2.6E-09 64.5 17.4 206 29-243 334-552 (677)
195 KOG2796|consensus 98.3 2.4E-05 5.2E-10 63.8 12.2 139 85-229 173-318 (366)
196 PF05843 Suf: Suppressor of fo 98.3 1.8E-05 3.9E-10 67.5 12.3 143 91-239 3-149 (280)
197 PF00515 TPR_1: Tetratricopept 98.2 2.8E-06 6E-11 47.3 4.6 31 125-155 3-33 (34)
198 COG0457 NrfG FOG: TPR repeat [ 98.2 0.00025 5.4E-09 57.4 18.1 203 30-240 36-245 (291)
199 COG0457 NrfG FOG: TPR repeat [ 98.2 0.00016 3.4E-09 58.6 16.2 114 98-211 139-256 (291)
200 KOG1130|consensus 98.2 1.7E-05 3.8E-10 68.5 10.0 121 89-209 235-373 (639)
201 PF03704 BTAD: Bacterial trans 98.2 0.00015 3.2E-09 55.4 14.3 96 90-185 7-124 (146)
202 PF00515 TPR_1: Tetratricopept 98.2 4.6E-06 1E-10 46.4 4.4 34 157-190 1-34 (34)
203 KOG2796|consensus 98.1 5E-05 1.1E-09 61.9 11.6 116 86-201 209-333 (366)
204 KOG2376|consensus 98.1 4.2E-05 9.2E-10 68.9 12.2 117 91-211 14-130 (652)
205 PF07719 TPR_2: Tetratricopept 98.1 7.8E-06 1.7E-10 45.4 5.0 29 126-154 4-32 (34)
206 PF07719 TPR_2: Tetratricopept 98.1 8.3E-06 1.8E-10 45.3 5.1 34 157-190 1-34 (34)
207 KOG0376|consensus 98.1 2.1E-06 4.5E-11 75.5 3.6 107 127-239 8-114 (476)
208 KOG1070|consensus 98.1 0.00058 1.3E-08 67.4 19.8 199 36-244 1443-1647(1710)
209 PF05843 Suf: Suppressor of fo 98.1 0.00037 8E-09 59.5 16.8 127 30-194 14-144 (280)
210 PRK04841 transcriptional regul 98.1 0.00016 3.5E-09 72.1 16.7 122 90-211 492-632 (903)
211 KOG1308|consensus 98.1 2.1E-06 4.5E-11 72.3 2.3 106 133-245 124-229 (377)
212 KOG3081|consensus 98.0 0.00035 7.7E-09 57.2 14.6 87 104-190 188-275 (299)
213 COG3071 HemY Uncharacterized e 97.9 0.0012 2.6E-08 57.0 16.6 125 87-211 82-207 (400)
214 KOG3785|consensus 97.9 0.0037 8E-08 53.5 18.9 85 126-210 154-238 (557)
215 KOG2471|consensus 97.9 2.6E-05 5.7E-10 68.7 6.5 118 87-204 238-382 (696)
216 KOG1941|consensus 97.9 9.3E-05 2E-09 63.1 8.7 122 90-211 123-266 (518)
217 KOG1586|consensus 97.9 0.00071 1.5E-08 54.4 13.2 104 89-192 113-230 (288)
218 KOG3081|consensus 97.8 0.0016 3.5E-08 53.5 15.0 113 97-211 145-261 (299)
219 KOG1915|consensus 97.8 0.0013 2.8E-08 58.3 15.1 127 84-211 68-194 (677)
220 COG3118 Thioredoxin domain-con 97.8 0.0017 3.7E-08 54.2 15.1 143 90-240 135-281 (304)
221 PRK04841 transcriptional regul 97.8 0.00095 2.1E-08 66.7 16.5 124 88-211 451-593 (903)
222 KOG2610|consensus 97.7 0.00048 1.1E-08 58.3 10.5 117 95-211 109-229 (491)
223 PF13181 TPR_8: Tetratricopept 97.7 8.4E-05 1.8E-09 41.1 4.2 29 126-154 4-32 (34)
224 KOG1310|consensus 97.7 0.00022 4.7E-09 63.7 8.3 108 84-191 369-479 (758)
225 PF13181 TPR_8: Tetratricopept 97.7 0.0001 2.2E-09 40.8 4.2 33 158-190 2-34 (34)
226 PF10300 DUF3808: Protein of u 97.6 0.00076 1.7E-08 61.8 11.7 104 104-207 248-356 (468)
227 PF04184 ST7: ST7 protein; In 97.6 0.0026 5.7E-08 56.8 14.2 116 94-211 173-315 (539)
228 KOG0551|consensus 97.6 0.00048 1E-08 58.2 9.2 89 123-211 81-173 (390)
229 COG2976 Uncharacterized protei 97.6 0.0032 6.9E-08 49.4 12.7 101 90-191 90-193 (207)
230 PF03704 BTAD: Bacterial trans 97.6 0.002 4.4E-08 49.1 11.9 108 29-152 18-125 (146)
231 PF04184 ST7: ST7 protein; In 97.6 0.0036 7.9E-08 56.0 14.4 109 89-197 259-386 (539)
232 KOG1586|consensus 97.6 0.0043 9.4E-08 50.0 13.5 141 86-233 31-190 (288)
233 KOG0530|consensus 97.6 0.0026 5.7E-08 52.1 12.4 139 104-243 93-233 (318)
234 PF10300 DUF3808: Protein of u 97.5 0.0015 3.3E-08 59.8 12.3 155 30-186 201-369 (468)
235 PRK10941 hypothetical protein; 97.5 0.0017 3.6E-08 54.7 11.4 77 124-200 182-258 (269)
236 KOG1585|consensus 97.5 0.0039 8.5E-08 50.6 12.8 124 88-211 30-170 (308)
237 KOG2396|consensus 97.5 0.0023 4.9E-08 57.1 12.4 94 107-200 89-183 (568)
238 PRK10941 hypothetical protein; 97.5 0.0028 6.1E-08 53.3 12.4 79 88-166 180-258 (269)
239 KOG1941|consensus 97.5 0.00062 1.4E-08 58.2 8.3 119 89-207 162-302 (518)
240 KOG4507|consensus 97.5 0.00056 1.2E-08 61.9 8.2 109 94-202 612-721 (886)
241 KOG2053|consensus 97.4 0.012 2.6E-07 56.1 16.7 142 30-210 22-164 (932)
242 PF07079 DUF1347: Protein of u 97.4 0.093 2E-06 46.7 20.1 192 29-235 310-529 (549)
243 KOG4507|consensus 97.3 0.0015 3.3E-08 59.2 9.4 111 21-168 611-721 (886)
244 KOG2610|consensus 97.3 0.0041 8.8E-08 52.9 11.4 157 28-184 114-274 (491)
245 KOG3824|consensus 97.3 0.0013 2.8E-08 55.1 8.3 81 86-166 113-193 (472)
246 PF12968 DUF3856: Domain of Un 97.3 0.0082 1.8E-07 43.1 11.0 97 90-186 8-129 (144)
247 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0017 3.6E-08 39.9 6.7 42 159-200 3-44 (53)
248 COG3898 Uncharacterized membra 97.3 0.016 3.5E-07 50.4 14.9 155 28-189 131-295 (531)
249 PF13174 TPR_6: Tetratricopept 97.3 0.00056 1.2E-08 37.3 4.2 28 127-154 4-31 (33)
250 KOG2471|consensus 97.3 0.0013 2.8E-08 58.4 8.1 141 94-240 211-378 (696)
251 PF13174 TPR_6: Tetratricopept 97.3 0.00063 1.4E-08 37.1 4.1 33 158-190 1-33 (33)
252 KOG3824|consensus 97.2 0.0014 3E-08 55.0 7.5 73 128-200 121-193 (472)
253 PF04781 DUF627: Protein of un 97.2 0.0082 1.8E-07 42.7 9.9 92 95-186 2-107 (111)
254 PF09613 HrpB1_HrpK: Bacterial 97.2 0.015 3.3E-07 44.4 12.0 109 88-198 9-117 (160)
255 PF13176 TPR_7: Tetratricopept 97.2 0.0009 2E-08 37.5 4.1 21 128-148 4-24 (36)
256 COG0790 FOG: TPR repeat, SEL1 97.2 0.093 2E-06 45.0 18.5 169 23-205 47-236 (292)
257 PF14561 TPR_20: Tetratricopep 97.2 0.0032 7E-08 43.6 7.6 64 143-206 8-73 (90)
258 PF14853 Fis1_TPR_C: Fis1 C-te 97.1 0.0033 7.2E-08 38.5 6.5 40 125-164 3-42 (53)
259 PF14561 TPR_20: Tetratricopep 97.1 0.0075 1.6E-07 41.7 8.9 65 108-172 7-73 (90)
260 KOG2047|consensus 97.1 0.016 3.5E-07 53.4 13.1 167 30-197 360-553 (835)
261 COG3898 Uncharacterized membra 97.0 0.18 3.9E-06 44.2 18.4 139 98-243 163-308 (531)
262 PF13176 TPR_7: Tetratricopept 97.0 0.0015 3.1E-08 36.7 4.1 28 159-186 1-28 (36)
263 PF13281 DUF4071: Domain of un 97.0 0.027 6E-07 49.4 13.7 124 87-211 139-279 (374)
264 smart00028 TPR Tetratricopepti 97.0 0.0016 3.5E-08 34.6 4.0 29 126-154 4-32 (34)
265 KOG3364|consensus 97.0 0.025 5.5E-07 41.6 10.9 83 122-204 31-118 (149)
266 PF02259 FAT: FAT domain; Int 96.9 0.045 9.8E-07 48.2 15.1 125 85-209 142-310 (352)
267 PF13281 DUF4071: Domain of un 96.9 0.073 1.6E-06 46.9 15.6 141 85-235 175-340 (374)
268 COG4976 Predicted methyltransf 96.9 0.0016 3.4E-08 52.3 4.8 60 132-191 4-63 (287)
269 PF09613 HrpB1_HrpK: Bacterial 96.9 0.081 1.8E-06 40.5 13.4 113 124-244 11-123 (160)
270 KOG3617|consensus 96.8 0.2 4.4E-06 48.0 18.0 123 89-211 912-1100(1416)
271 smart00028 TPR Tetratricopepti 96.8 0.0024 5.3E-08 33.9 3.7 33 158-190 2-34 (34)
272 COG2976 Uncharacterized protei 96.8 0.12 2.6E-06 40.8 13.9 129 100-238 64-199 (207)
273 KOG1550|consensus 96.7 0.089 1.9E-06 49.5 15.6 170 32-210 227-416 (552)
274 KOG2047|consensus 96.6 0.072 1.6E-06 49.4 13.6 185 26-210 396-605 (835)
275 COG5191 Uncharacterized conser 96.6 0.0062 1.3E-07 51.2 6.4 87 111-197 95-182 (435)
276 KOG4814|consensus 96.6 0.031 6.8E-07 51.5 11.2 98 89-186 354-457 (872)
277 PF04910 Tcf25: Transcriptiona 96.6 0.077 1.7E-06 47.0 13.5 126 82-207 33-194 (360)
278 PF09986 DUF2225: Uncharacteri 96.6 0.05 1.1E-06 44.3 11.3 101 99-199 87-208 (214)
279 KOG0530|consensus 96.5 0.073 1.6E-06 44.0 11.6 114 98-211 52-167 (318)
280 COG3914 Spy Predicted O-linked 96.5 0.086 1.9E-06 48.3 13.2 114 95-208 73-193 (620)
281 COG4976 Predicted methyltransf 96.5 0.0051 1.1E-07 49.5 4.9 60 98-157 4-63 (287)
282 PF02259 FAT: FAT domain; Int 96.5 0.17 3.6E-06 44.6 15.2 128 28-189 157-341 (352)
283 COG3118 Thioredoxin domain-con 96.4 0.35 7.5E-06 40.8 15.4 65 145-209 224-290 (304)
284 KOG3617|consensus 96.4 0.052 1.1E-06 51.7 11.5 97 89-185 858-995 (1416)
285 KOG1585|consensus 96.4 0.18 3.9E-06 41.3 12.9 89 94-182 76-175 (308)
286 PF08424 NRDE-2: NRDE-2, neces 96.3 0.11 2.5E-06 45.2 12.7 87 111-197 7-105 (321)
287 TIGR02561 HrpB1_HrpK type III 96.2 0.35 7.6E-06 36.5 13.6 87 90-176 11-97 (153)
288 PF10602 RPN7: 26S proteasome 96.1 0.17 3.7E-06 39.9 11.9 101 87-187 34-143 (177)
289 COG2912 Uncharacterized conser 96.1 0.054 1.2E-06 45.1 9.1 75 125-199 183-257 (269)
290 KOG0546|consensus 96.1 0.0086 1.9E-07 51.3 4.4 118 90-207 223-359 (372)
291 PF08631 SPO22: Meiosis protei 96.1 0.78 1.7E-05 39.1 16.7 130 29-188 5-152 (278)
292 PF15015 NYD-SP12_N: Spermatog 96.0 0.085 1.8E-06 46.4 9.9 95 90-184 177-289 (569)
293 COG2912 Uncharacterized conser 95.9 0.08 1.7E-06 44.1 9.4 67 160-232 184-250 (269)
294 KOG1550|consensus 95.9 0.17 3.7E-06 47.7 12.7 115 86-204 241-373 (552)
295 PF08631 SPO22: Meiosis protei 95.8 0.41 8.9E-06 40.8 13.7 124 99-228 3-152 (278)
296 COG3914 Spy Predicted O-linked 95.8 0.19 4.1E-06 46.2 11.9 125 103-233 45-178 (620)
297 PF13374 TPR_10: Tetratricopep 95.8 0.027 5.8E-07 32.3 4.6 29 124-152 3-31 (42)
298 KOG3364|consensus 95.8 0.16 3.5E-06 37.5 9.3 75 89-163 32-111 (149)
299 TIGR02561 HrpB1_HrpK type III 95.7 0.2 4.4E-06 37.8 9.9 105 126-241 13-120 (153)
300 PF12968 DUF3856: Domain of Un 95.6 0.13 2.9E-06 37.1 8.1 98 29-152 21-129 (144)
301 COG5191 Uncharacterized conser 95.4 0.019 4.1E-07 48.4 3.8 86 78-163 96-182 (435)
302 PF08424 NRDE-2: NRDE-2, neces 95.4 0.68 1.5E-05 40.4 13.6 107 105-211 47-174 (321)
303 KOG2300|consensus 95.3 0.51 1.1E-05 42.6 12.4 153 85-243 363-537 (629)
304 PF13374 TPR_10: Tetratricopep 95.3 0.053 1.2E-06 31.0 4.6 30 157-186 2-31 (42)
305 KOG1258|consensus 95.3 0.95 2.1E-05 41.9 14.4 132 80-211 288-420 (577)
306 PF04910 Tcf25: Transcriptiona 95.2 2 4.3E-05 38.1 16.2 94 114-207 31-155 (360)
307 COG0790 FOG: TPR repeat, SEL1 95.2 1.7 3.8E-05 37.1 17.7 152 29-191 89-271 (292)
308 KOG2300|consensus 95.2 0.57 1.2E-05 42.3 12.3 123 89-211 7-147 (629)
309 PF12862 Apc5: Anaphase-promot 95.1 0.14 3.1E-06 35.6 7.2 53 100-152 9-70 (94)
310 PF04781 DUF627: Protein of un 95.0 0.17 3.6E-06 36.2 7.1 83 129-211 2-98 (111)
311 KOG1310|consensus 95.0 0.089 1.9E-06 47.7 6.9 77 135-211 386-465 (758)
312 KOG1914|consensus 95.0 3 6.4E-05 38.4 17.2 97 79-177 10-107 (656)
313 KOG4814|consensus 94.9 0.24 5.3E-06 46.0 9.7 87 125-211 356-448 (872)
314 PF10373 EST1_DNA_bind: Est1 D 94.9 0.13 2.9E-06 43.6 7.9 62 142-203 1-62 (278)
315 KOG2396|consensus 94.8 0.21 4.5E-06 45.1 8.7 95 140-240 88-183 (568)
316 KOG0529|consensus 94.8 0.5 1.1E-05 41.7 10.8 139 104-243 90-241 (421)
317 COG4649 Uncharacterized protei 94.7 1.5 3.3E-05 34.1 12.5 114 89-203 94-212 (221)
318 PF12862 Apc5: Anaphase-promot 94.7 0.23 5E-06 34.6 7.2 57 133-189 8-73 (94)
319 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.63 1.4E-05 31.0 8.5 63 90-152 7-72 (80)
320 COG3629 DnrI DNA-binding trans 94.4 0.54 1.2E-05 39.8 9.9 64 122-185 152-215 (280)
321 PF07720 TPR_3: Tetratricopept 94.3 0.2 4.2E-06 27.9 4.9 30 91-120 3-34 (36)
322 PF10373 EST1_DNA_bind: Est1 D 94.2 0.22 4.7E-06 42.3 7.6 62 108-169 1-62 (278)
323 PF09986 DUF2225: Uncharacteri 94.2 0.79 1.7E-05 37.4 10.3 78 87-164 116-207 (214)
324 PF07720 TPR_3: Tetratricopept 94.1 0.24 5.1E-06 27.6 4.9 30 125-154 3-34 (36)
325 PF07079 DUF1347: Protein of u 94.0 1.8 4E-05 38.9 12.6 134 90-229 7-160 (549)
326 PF10345 Cohesin_load: Cohesin 94.0 6.1 0.00013 37.9 17.8 107 87-194 57-178 (608)
327 PF10516 SHNi-TPR: SHNi-TPR; 93.9 0.14 3E-06 28.9 3.8 26 126-151 4-29 (38)
328 KOG0985|consensus 93.7 2.8 6.1E-05 41.6 14.2 111 87-211 1102-1240(1666)
329 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.14 3E-06 28.9 3.5 30 158-187 2-31 (38)
330 PF07721 TPR_4: Tetratricopept 93.6 0.12 2.6E-06 26.3 3.0 17 128-144 6-22 (26)
331 COG3629 DnrI DNA-binding trans 93.5 0.85 1.8E-05 38.6 9.4 66 87-152 151-216 (280)
332 PF10602 RPN7: 26S proteasome 93.3 0.74 1.6E-05 36.3 8.4 89 123-211 36-133 (177)
333 PF07721 TPR_4: Tetratricopept 93.1 0.14 3.1E-06 26.1 2.8 24 158-181 2-25 (26)
334 PF11207 DUF2989: Protein of u 93.0 0.38 8.2E-06 38.4 6.3 78 99-178 116-199 (203)
335 PRK13184 pknD serine/threonine 92.9 0.86 1.9E-05 45.4 9.9 99 94-193 480-588 (932)
336 KOG2422|consensus 92.8 3.8 8.2E-05 38.0 12.9 129 29-183 250-404 (665)
337 KOG0529|consensus 92.7 6.9 0.00015 34.8 15.2 149 97-248 36-200 (421)
338 PRK13184 pknD serine/threonine 92.5 3.3 7.2E-05 41.4 13.3 126 30-193 488-627 (932)
339 KOG4151|consensus 92.3 0.97 2.1E-05 43.2 9.0 123 88-210 52-180 (748)
340 PF15015 NYD-SP12_N: Spermatog 92.2 0.48 1.1E-05 41.9 6.5 82 130-211 183-282 (569)
341 KOG1914|consensus 92.2 9.7 0.00021 35.3 19.5 80 132-211 375-455 (656)
342 KOG2581|consensus 91.8 5.7 0.00012 35.3 12.4 127 84-210 164-306 (493)
343 PRK15180 Vi polysaccharide bio 91.6 1.6 3.6E-05 39.5 9.1 97 93-189 327-423 (831)
344 COG4455 ImpE Protein of avirul 91.5 1.5 3.2E-05 35.6 7.9 58 133-190 11-68 (273)
345 PRK15180 Vi polysaccharide bio 91.3 0.93 2E-05 41.0 7.3 96 99-194 299-394 (831)
346 COG3947 Response regulator con 91.3 1 2.2E-05 38.1 7.0 49 163-211 285-333 (361)
347 smart00386 HAT HAT (Half-A-TPR 91.2 0.67 1.4E-05 24.4 4.3 28 172-199 2-29 (33)
348 PF11207 DUF2989: Protein of u 91.1 4.1 8.9E-05 32.6 10.0 72 139-211 122-198 (203)
349 PF10579 Rapsyn_N: Rapsyn N-te 90.8 3 6.4E-05 27.8 7.5 56 127-182 10-68 (80)
350 KOG3807|consensus 90.1 6.6 0.00014 34.0 11.0 96 92-189 187-307 (556)
351 COG2909 MalT ATP-dependent tra 89.8 22 0.00047 35.1 16.6 120 86-205 412-551 (894)
352 KOG2041|consensus 89.4 2.7 5.8E-05 39.9 8.8 137 87-243 690-864 (1189)
353 COG2909 MalT ATP-dependent tra 89.4 10 0.00022 37.2 12.8 65 88-152 457-526 (894)
354 smart00386 HAT HAT (Half-A-TPR 88.8 1.5 3.3E-05 22.9 4.5 26 104-129 2-27 (33)
355 COG3947 Response regulator con 88.4 4.2 9E-05 34.5 8.5 58 126-183 282-339 (361)
356 PF10255 Paf67: RNA polymerase 88.2 1.1 2.4E-05 40.1 5.4 27 158-184 165-191 (404)
357 KOG0890|consensus 88.1 8.8 0.00019 41.7 12.3 119 83-203 1664-1801(2382)
358 COG4649 Uncharacterized protei 88.0 11 0.00025 29.5 13.2 120 92-211 61-187 (221)
359 KOG1839|consensus 87.9 2.5 5.4E-05 42.9 8.1 127 84-210 968-1118(1236)
360 KOG1839|consensus 87.8 2.3 5E-05 43.1 7.8 125 87-211 930-1077(1236)
361 PF14863 Alkyl_sulf_dimr: Alky 87.4 3.4 7.3E-05 31.2 6.9 53 158-210 71-123 (141)
362 PF08311 Mad3_BUB1_I: Mad3/BUB 87.1 7 0.00015 28.8 8.4 44 107-150 81-126 (126)
363 TIGR03504 FimV_Cterm FimV C-te 87.1 1.6 3.4E-05 25.5 3.9 25 127-151 3-27 (44)
364 KOG2422|consensus 86.7 11 0.00023 35.2 10.7 94 101-194 250-380 (665)
365 KOG1258|consensus 86.4 10 0.00022 35.4 10.5 126 101-232 267-401 (577)
366 PF14863 Alkyl_sulf_dimr: Alky 86.2 4 8.8E-05 30.8 6.7 47 91-137 72-118 (141)
367 KOG1464|consensus 85.9 19 0.00041 30.5 10.9 95 127-227 149-261 (440)
368 KOG2041|consensus 85.8 11 0.00023 36.2 10.4 87 84-182 791-877 (1189)
369 KOG0546|consensus 85.7 0.87 1.9E-05 39.4 3.3 80 90-169 276-355 (372)
370 TIGR03504 FimV_Cterm FimV C-te 85.4 2.3 4.9E-05 24.9 4.0 25 161-185 3-27 (44)
371 PF10952 DUF2753: Protein of u 84.7 5.9 0.00013 28.9 6.5 28 91-118 3-30 (140)
372 KOG0985|consensus 84.7 29 0.00063 35.0 13.0 80 125-204 1222-1326(1666)
373 smart00777 Mad3_BUB1_I Mad3/BU 84.6 8.8 0.00019 28.3 7.7 26 122-147 98-123 (125)
374 COG4455 ImpE Protein of avirul 84.4 21 0.00046 29.2 12.5 61 97-157 9-69 (273)
375 cd02682 MIT_AAA_Arch MIT: doma 84.0 9.6 0.00021 25.2 6.9 29 89-117 6-34 (75)
376 KOG3616|consensus 83.8 28 0.00062 33.7 12.2 101 100-211 743-844 (1636)
377 PHA02537 M terminase endonucle 83.7 13 0.00029 30.6 9.1 54 7-60 62-126 (230)
378 PF11817 Foie-gras_1: Foie gra 83.5 13 0.00028 31.1 9.4 58 125-182 180-243 (247)
379 COG4941 Predicted RNA polymera 82.5 12 0.00026 32.5 8.6 94 104-198 311-406 (415)
380 PF12854 PPR_1: PPR repeat 82.1 4.6 0.0001 21.9 4.2 26 157-182 7-32 (34)
381 PF10255 Paf67: RNA polymerase 81.5 5.5 0.00012 35.8 6.6 59 92-151 125-192 (404)
382 KOG0686|consensus 81.5 13 0.00027 33.2 8.6 97 88-184 149-256 (466)
383 COG5107 RNA14 Pre-mRNA 3'-end 81.2 37 0.0008 31.0 11.4 121 82-203 35-164 (660)
384 PF11817 Foie-gras_1: Foie gra 80.9 11 0.00024 31.4 8.1 62 89-150 178-245 (247)
385 PF12854 PPR_1: PPR repeat 79.7 6 0.00013 21.4 4.1 26 123-148 7-32 (34)
386 cd02682 MIT_AAA_Arch MIT: doma 79.5 11 0.00023 25.0 5.9 24 127-150 10-33 (75)
387 PF09670 Cas_Cas02710: CRISPR- 79.2 27 0.00059 31.3 10.4 63 90-152 132-198 (379)
388 PF10345 Cohesin_load: Cohesin 78.5 65 0.0014 31.0 17.8 86 89-174 361-466 (608)
389 PF11846 DUF3366: Domain of un 78.1 11 0.00024 30.0 7.0 49 139-188 127-175 (193)
390 KOG3783|consensus 77.5 62 0.0013 30.2 19.2 194 34-238 250-531 (546)
391 KOG4014|consensus 77.2 35 0.00076 27.1 14.0 64 102-169 86-156 (248)
392 KOG2581|consensus 77.1 56 0.0012 29.4 12.9 105 84-191 242-354 (493)
393 PHA02537 M terminase endonucle 77.1 8.7 0.00019 31.6 6.0 105 99-204 93-224 (230)
394 COG1747 Uncharacterized N-term 76.6 66 0.0014 30.0 13.0 115 87-203 97-251 (711)
395 cd02681 MIT_calpain7_1 MIT: do 76.4 6.6 0.00014 26.1 4.3 16 169-184 18-33 (76)
396 PF04053 Coatomer_WDAD: Coatom 76.2 64 0.0014 29.7 13.0 101 30-150 274-374 (443)
397 PF04190 DUF410: Protein of un 75.6 39 0.00086 28.5 9.9 69 84-152 85-170 (260)
398 KOG3783|consensus 75.1 55 0.0012 30.5 11.0 66 125-190 451-524 (546)
399 PF11846 DUF3366: Domain of un 74.3 17 0.00036 29.0 7.1 50 105-155 127-176 (193)
400 PF13226 DUF4034: Domain of un 74.0 55 0.0012 27.9 11.0 111 97-207 8-149 (277)
401 PF04212 MIT: MIT (microtubule 73.1 12 0.00026 24.1 4.9 28 90-117 6-33 (69)
402 cd02679 MIT_spastin MIT: domai 72.9 9 0.0002 25.6 4.3 15 171-185 22-36 (79)
403 COG5107 RNA14 Pre-mRNA 3'-end 72.6 78 0.0017 29.0 14.5 119 92-210 400-521 (660)
404 PF04053 Coatomer_WDAD: Coatom 72.4 80 0.0017 29.0 13.0 92 92-207 298-389 (443)
405 PRK15490 Vi polysaccharide bio 71.5 94 0.002 29.6 11.9 79 101-181 20-98 (578)
406 PF01535 PPR: PPR repeat; Int 71.3 7.8 0.00017 19.8 3.2 14 133-146 10-23 (31)
407 PF09797 NatB_MDM20: N-acetylt 71.2 28 0.00061 30.9 8.4 46 103-148 197-242 (365)
408 PF13041 PPR_2: PPR repeat fam 71.0 19 0.00041 21.2 5.8 28 91-118 5-32 (50)
409 KOG0276|consensus 70.6 72 0.0016 30.3 10.6 48 99-151 647-694 (794)
410 KOG3616|consensus 70.1 15 0.00034 35.4 6.5 113 89-211 765-902 (1636)
411 KOG3807|consensus 69.4 79 0.0017 27.7 13.4 108 91-198 277-403 (556)
412 cd02681 MIT_calpain7_1 MIT: do 68.8 15 0.00033 24.3 4.7 29 89-117 6-34 (76)
413 PF07219 HemY_N: HemY protein 68.7 39 0.00085 24.0 7.2 49 89-137 59-107 (108)
414 KOG2561|consensus 68.3 53 0.0011 29.8 9.0 98 89-186 163-296 (568)
415 KOG0276|consensus 67.7 65 0.0014 30.6 9.8 26 90-115 667-692 (794)
416 PF09205 DUF1955: Domain of un 67.5 50 0.0011 24.8 7.5 19 30-48 15-33 (161)
417 KOG4014|consensus 66.9 64 0.0014 25.7 13.2 111 88-203 33-156 (248)
418 cd02680 MIT_calpain7_2 MIT: do 66.8 15 0.00034 24.2 4.3 17 135-151 18-34 (75)
419 PF09670 Cas_Cas02710: CRISPR- 66.5 97 0.0021 27.8 10.8 88 92-186 172-270 (379)
420 PF13041 PPR_2: PPR repeat fam 65.9 25 0.00054 20.7 6.3 27 126-152 6-32 (50)
421 TIGR00756 PPR pentatricopeptid 65.9 17 0.00037 18.8 3.9 19 131-149 8-26 (35)
422 PRK11619 lytic murein transgly 65.1 1.3E+02 0.0028 29.3 11.9 55 131-185 320-374 (644)
423 PRK11619 lytic murein transgly 64.8 1.1E+02 0.0024 29.7 11.4 52 99-150 322-373 (644)
424 PF13226 DUF4034: Domain of un 64.7 47 0.001 28.3 7.9 68 108-175 62-151 (277)
425 cd02683 MIT_1 MIT: domain cont 64.6 18 0.0004 24.0 4.5 27 91-117 8-34 (77)
426 PF07219 HemY_N: HemY protein 63.9 49 0.0011 23.5 6.9 45 127-171 63-107 (108)
427 PF10952 DUF2753: Protein of u 63.9 56 0.0012 24.0 8.4 98 126-240 4-125 (140)
428 PF00244 14-3-3: 14-3-3 protei 63.8 56 0.0012 27.1 8.2 159 27-185 11-197 (236)
429 PF05053 Menin: Menin; InterP 63.4 70 0.0015 30.1 9.1 79 122-200 276-367 (618)
430 KOG1497|consensus 63.1 81 0.0017 27.5 8.8 85 123-207 103-196 (399)
431 KOG4279|consensus 61.8 1.2E+02 0.0026 29.8 10.5 112 27-165 297-408 (1226)
432 COG5536 BET4 Protein prenyltra 61.6 64 0.0014 27.5 7.9 99 105-203 90-196 (328)
433 PF09205 DUF1955: Domain of un 60.5 70 0.0015 24.0 7.5 50 136-185 99-148 (161)
434 KOG0292|consensus 60.3 69 0.0015 31.9 8.8 31 131-161 1092-1122(1202)
435 PF08238 Sel1: Sel1 repeat; I 60.1 26 0.00057 19.0 4.1 9 174-182 25-33 (39)
436 PF04212 MIT: MIT (microtubule 59.9 27 0.00059 22.4 4.6 23 129-151 11-33 (69)
437 PF15469 Sec5: Exocyst complex 59.9 83 0.0018 24.7 8.6 27 171-197 153-179 (182)
438 KOG1463|consensus 59.8 42 0.00092 29.4 6.7 152 93-244 132-331 (411)
439 cd02677 MIT_SNX15 MIT: domain 59.5 16 0.00036 24.1 3.5 14 137-150 20-33 (75)
440 cd02680 MIT_calpain7_2 MIT: do 57.6 26 0.00057 23.2 4.2 31 88-118 5-35 (75)
441 PF01239 PPTA: Protein prenylt 56.8 27 0.0006 18.2 4.6 26 177-202 3-28 (31)
442 smart00299 CLH Clathrin heavy 56.7 78 0.0017 23.4 12.1 78 99-182 17-94 (140)
443 PF06957 COPI_C: Coatomer (COP 56.5 1.6E+02 0.0034 26.9 10.2 123 88-210 203-353 (422)
444 cd02678 MIT_VPS4 MIT: domain c 56.2 35 0.00075 22.4 4.7 27 91-117 8-34 (75)
445 KOG1118|consensus 55.7 1.4E+02 0.0029 25.8 11.3 46 143-188 92-137 (366)
446 PF13812 PPR_3: Pentatricopept 55.6 29 0.00062 18.0 4.3 20 129-148 7-26 (34)
447 KOG4279|consensus 55.5 1E+02 0.0022 30.2 9.0 90 102-192 300-401 (1226)
448 PF02184 HAT: HAT (Half-A-TPR) 55.5 28 0.0006 18.8 3.2 26 172-198 2-27 (32)
449 smart00745 MIT Microtubule Int 55.3 36 0.00078 22.3 4.7 26 92-117 11-36 (77)
450 PF12739 TRAPPC-Trs85: ER-Golg 55.1 1.7E+02 0.0036 26.7 11.8 97 90-186 209-329 (414)
451 KOG4521|consensus 54.3 2.8E+02 0.006 29.0 14.9 187 22-228 925-1133(1480)
452 KOG0890|consensus 54.2 3.6E+02 0.0079 30.5 13.5 81 105-187 1645-1732(2382)
453 PF02064 MAS20: MAS20 protein 53.4 38 0.00082 24.8 4.8 31 93-123 67-97 (121)
454 PF12753 Nro1: Nuclear pore co 52.8 29 0.00063 31.0 4.8 46 139-186 334-391 (404)
455 KOG0889|consensus 51.9 4.8E+02 0.01 31.0 18.7 103 124-234 2813-2923(3550)
456 cd02656 MIT MIT: domain contai 51.7 45 0.00098 21.7 4.7 26 92-117 9-34 (75)
457 PF04348 LppC: LppC putative l 51.6 4.9 0.00011 37.8 0.0 59 89-147 24-85 (536)
458 TIGR02996 rpt_mate_G_obs repea 51.3 46 0.001 19.2 4.1 32 145-176 4-35 (42)
459 KOG1464|consensus 50.9 60 0.0013 27.6 6.1 51 101-151 39-93 (440)
460 PF02064 MAS20: MAS20 protein 50.5 58 0.0013 23.9 5.4 28 128-155 68-95 (121)
461 cd02683 MIT_1 MIT: domain cont 50.2 43 0.00092 22.3 4.3 16 135-150 18-33 (77)
462 COG1747 Uncharacterized N-term 50.2 2.2E+02 0.0049 26.7 10.1 86 98-186 75-160 (711)
463 cd02679 MIT_spastin MIT: domai 49.1 58 0.0012 21.8 4.8 13 105-117 5-17 (79)
464 cd00280 TRFH Telomeric Repeat 49.1 45 0.00099 26.4 4.9 44 131-175 119-162 (200)
465 PF04090 RNA_pol_I_TF: RNA pol 49.0 1.4E+02 0.0031 24.0 11.9 119 85-204 37-191 (199)
466 PRK15490 Vi polysaccharide bio 48.8 1E+02 0.0022 29.3 8.0 79 131-211 16-94 (578)
467 COG4941 Predicted RNA polymera 48.7 1.3E+02 0.0029 26.4 8.0 72 94-165 334-407 (415)
468 PF04190 DUF410: Protein of un 48.3 1.7E+02 0.0036 24.7 10.7 95 87-181 8-114 (260)
469 PF09797 NatB_MDM20: N-acetylt 47.7 57 0.0012 29.0 6.2 46 137-182 197-242 (365)
470 PF08626 TRAPPC9-Trs120: Trans 47.1 3.1E+02 0.0068 29.0 12.0 151 87-243 240-496 (1185)
471 cd02684 MIT_2 MIT: domain cont 46.2 57 0.0012 21.5 4.5 26 92-117 9-34 (75)
472 cd02677 MIT_SNX15 MIT: domain 44.5 55 0.0012 21.6 4.2 29 90-118 7-35 (75)
473 COG5187 RPN7 26S proteasome re 44.0 2.1E+02 0.0046 24.7 10.0 28 124-151 116-143 (412)
474 COG5091 SGT1 Suppressor of G2 43.5 39 0.00085 28.5 4.0 92 98-189 4-111 (368)
475 KOG1114|consensus 43.2 3.8E+02 0.0083 27.4 12.7 64 144-207 1217-1283(1304)
476 KOG2114|consensus 43.1 2.6E+02 0.0056 27.9 9.7 32 87-118 366-397 (933)
477 COG5159 RPN6 26S proteasome re 42.8 2.2E+02 0.0048 24.6 12.7 141 93-240 7-211 (421)
478 TIGR02508 type_III_yscG type I 42.7 1.2E+02 0.0026 21.5 7.1 67 138-210 20-87 (115)
479 PF12583 TPPII_N: Tripeptidyl 42.7 1.4E+02 0.003 22.2 6.8 44 89-132 76-119 (139)
480 COG5187 RPN7 26S proteasome re 42.0 2.3E+02 0.005 24.5 11.1 104 86-189 112-224 (412)
481 KOG1538|consensus 42.0 1.1E+02 0.0024 29.5 7.0 26 158-183 805-830 (1081)
482 KOG4563|consensus 41.7 97 0.0021 27.5 6.2 62 85-146 37-106 (400)
483 COG4259 Uncharacterized protei 41.6 1.3E+02 0.0027 21.3 6.5 39 121-159 70-108 (121)
484 KOG0011|consensus 41.0 1.1E+02 0.0024 26.6 6.4 21 267-287 241-261 (340)
485 smart00745 MIT Microtubule Int 40.5 76 0.0016 20.7 4.5 15 136-150 21-35 (77)
486 COG5536 BET4 Protein prenyltra 40.4 1.3E+02 0.0028 25.7 6.5 121 82-202 101-238 (328)
487 KOG4151|consensus 40.3 51 0.0011 32.1 4.7 112 106-231 44-161 (748)
488 PF07163 Pex26: Pex26 protein; 40.2 2.4E+02 0.0052 24.2 9.3 122 89-211 35-178 (309)
489 KOG0687|consensus 39.9 2.6E+02 0.0057 24.6 10.8 104 86-189 101-213 (393)
490 COG2015 Alkyl sulfatase and re 39.2 99 0.0021 28.6 6.0 53 159-211 454-506 (655)
491 KOG2758|consensus 38.7 2.7E+02 0.0059 24.4 13.0 154 84-243 124-334 (432)
492 cd00280 TRFH Telomeric Repeat 38.3 99 0.0021 24.6 5.2 34 98-132 120-153 (200)
493 PF08311 Mad3_BUB1_I: Mad3/BUB 37.9 1.6E+02 0.0035 21.6 10.6 80 103-184 40-126 (126)
494 KOG2114|consensus 37.7 1.4E+02 0.003 29.7 7.1 56 96-152 341-397 (933)
495 KOG0739|consensus 37.4 2.5E+02 0.0054 24.5 7.8 15 105-119 7-21 (439)
496 COG2015 Alkyl sulfatase and re 37.3 1.1E+02 0.0023 28.4 6.0 47 92-138 455-501 (655)
497 TIGR02710 CRISPR-associated pr 37.1 3.1E+02 0.0068 24.7 11.9 64 85-148 124-196 (380)
498 PF15297 CKAP2_C: Cytoskeleton 36.6 1.4E+02 0.003 26.3 6.4 50 140-189 120-172 (353)
499 PF05053 Menin: Menin; InterP 36.5 2.2E+02 0.0049 26.9 8.0 64 89-152 277-347 (618)
500 TIGR03362 VI_chp_7 type VI sec 36.5 2.8E+02 0.0062 24.0 12.3 124 97-227 107-280 (301)
No 1
>KOG0553|consensus
Probab=99.97 E-value=6.7e-28 Score=195.95 Aligned_cols=274 Identities=33% Similarity=0.555 Sum_probs=224.4
Q ss_pred chhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH----HHHHhchhhhhhhhccCCC
Q psy4130 4 KPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES----LFQLYYKDEVLQWYSNINF 79 (314)
Q Consensus 4 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~ 79 (314)
+++ ++..|+.|+.........+....+.++.|+.|++.++.+.+ ++.....+. .+..... . ...
T Consensus 3 ~~~-~~~~~~~~~~~~~~~~~~s~~~~esleva~qc~e~~f~~~~---~~~~~~~~~~~l~~~~~~~~-----~---~~~ 70 (304)
T KOG0553|consen 3 SKK-LAAAIIQFLKQKSSFGWISEDGAESLEVAIQCLEAAFGFRR---DDVDRAEGTTLLDSFESAER-----H---PVE 70 (304)
T ss_pred chh-HHHHHHHhHHHHhhcCCCCCcchhHHHHhHHHHHHHhCcch---hhccccccccHHHHHHHhcc-----C---ccc
Confidence 455 99999999999999999999999999999999999999999 443322222 2222222 0 011
Q ss_pred CCCh-hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130 80 SPTE-EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK 158 (314)
Q Consensus 80 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 158 (314)
.... .+...++.+...|+-+++.++|.+|+..|.+||.++|.++.+|+++|.+|.++|.++.|+++++.||.+||.+.+
T Consensus 71 ~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 71 ILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK 150 (304)
T ss_pred ccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence 1122 567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCC---------CCCcchHHHHH-Hhcc
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGS---------GGVFPGLSEMS-TKVL 228 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~---------~~~~~~~~~~~-~~~~ 228 (314)
+|.+||.+|..+|++++|++.|+++|+++|++..++.+|..+..++++....... .+.+|.+.... ..++
T Consensus 151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~~~l~ 230 (304)
T KOG0553|consen 151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFNGDLM 230 (304)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhccccc
Confidence 9999999999999999999999999999999999999999999999888844322 22226777777 4889
Q ss_pred CChHHHHHHHHhhcCCCCCC--CCCCCCcchHHHHHHHHHHHHHHHHhhChHHHHHHHHHhCC
Q psy4130 229 SDPSIQQVFGELFANPGQQA--TATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQQFGP 289 (314)
Q Consensus 229 ~~p~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 289 (314)
++|.+......+........ .........+..++.+++++.......+|.+.++++..+++
T Consensus 231 nnp~l~~~~~~m~~~~~~~~~~~~~~~~~~~i~~~~~a~~q~~~~~~~~n~p~~e~~~~~~~~ 293 (304)
T KOG0553|consen 231 NNPQLMQLASQMMKDGALNGPKNGPDNKTDMIASLIGAGGQMPELSDGANPPLIENLRGNFGG 293 (304)
T ss_pred cCHHHHHHHHHHhhcccccCccCCCcchhhHHHHHHhccCCCCccccccCCHHHHHHHhhcCC
Confidence 99999988888877211111 12222245678889999999999999999999999987743
No 2
>KOG4626|consensus
Probab=99.91 E-value=3.6e-24 Score=188.32 Aligned_cols=211 Identities=17% Similarity=0.134 Sum_probs=175.9
Q ss_pred cccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch--hhhhhhhccCCCCCChhhHHHHHHHHHHHHH
Q psy4130 21 LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK--DEVLQWYSNINFSPTEEVKIEAEKYKNLGNT 98 (314)
Q Consensus 21 ~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 98 (314)
.+.|.....+|++..||..|+++++++|++ .+.+++++.+|..... .+..++ .++....|..+.++-++|.+
T Consensus 222 snLg~~f~~~Gei~~aiq~y~eAvkldP~f-~dAYiNLGnV~ke~~~~d~Avs~Y-----~rAl~lrpn~A~a~gNla~i 295 (966)
T KOG4626|consen 222 SNLGCVFNAQGEIWLAIQHYEEAVKLDPNF-LDAYINLGNVYKEARIFDRAVSCY-----LRALNLRPNHAVAHGNLACI 295 (966)
T ss_pred hhcchHHhhcchHHHHHHHHHHhhcCCCcc-hHHHhhHHHHHHHHhcchHHHHHH-----HHHHhcCCcchhhccceEEE
Confidence 456777778999999999999999999998 4557799988876653 333333 44456778889999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 178 (314)
|+.+|..+-||..|++++++.|..+++|+|+|.++...|+..+|+.+|.+|+.++|+++++..+||.++.++|.+++|..
T Consensus 296 YyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 296 YYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred EeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 179 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.|+++++..|....+..+|+.++..+|++++|+ ..+.++++.-|.-.+....+++.+..
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai------~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI------MCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH------HHHHHHHhcCchHHHHHHhcchHHHH
Confidence 999999999999999999999999999999998 66666666554444444444444333
No 3
>KOG4626|consensus
Probab=99.90 E-value=3.1e-23 Score=182.48 Aligned_cols=206 Identities=19% Similarity=0.185 Sum_probs=180.8
Q ss_pred ccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130 22 RDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 22 ~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
+.+..+..+|.++-||.+|+++++++|++++ .+.+++.-....+. .++... +.+++...|..+++.+++|+++.
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~-Ay~NlanALkd~G~V~ea~~c----YnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPD-AYNNLANALKDKGSVTEAVDC----YNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchH-HHhHHHHHHHhccchHHHHHH----HHHHHHhCCccHHHHHHHHHHHH
Confidence 4556777899999999999999999999944 46677775555553 233332 24456678899999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
.+|.+++|...|.++++..|+.+.++.|+|.+|.++|++++|+.+|+.++++.|..++++.++|..|..+|+...|+++|
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 181 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
.+++.++|...+++.+|+.++...|+..+|+ ..+..+.+.-|.-|+....+.
T Consensus 446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI------~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAI------QSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHHHhcCcHHHHHHhhHHHHhhccCCcHHHH------HHHHHHHccCCCCchhhhHHH
Confidence 9999999999999999999999999999999 888888887777776544333
No 4
>KOG1126|consensus
Probab=99.83 E-value=3.1e-20 Score=165.19 Aligned_cols=214 Identities=18% Similarity=0.181 Sum_probs=160.1
Q ss_pred ccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 22 RDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 22 ~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
+.|..+....++++|..+|+.+=+++|-..++..++-..++.-....+.... .+..++.++..++.|..+|++|--
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L----aq~Li~~~~~sPesWca~GNcfSL 433 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL----AQDLIDTDPNSPESWCALGNCFSL 433 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH----HHHHHhhCCCCcHHHHHhcchhhh
Confidence 3555667788999999999999999997766655333223322222222222 233466778888999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCH----------------------------------HHHHHHHHHHHHccCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNP----------------------------------VYYCNRAASNNKLKNYKLALRDCQ 147 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~la~~~~~~~~~~~A~~~~~ 147 (314)
+++++.|+++|++|+.+||..+ .+|+.+|.+|.++++++.|.-+|+
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq 513 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ 513 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence 9999999999999998888643 567777777777777777777777
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 148 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
+|+.++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..+.++..++++++|. ..+.+.....
T Consensus 514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal------~~LEeLk~~v 587 (638)
T KOG1126|consen 514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL------QELEELKELV 587 (638)
T ss_pred hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH------HHHHHHHHhC
Confidence 7777777777777777777777777777777777777777777777777777777777777777 7777777777
Q ss_pred cCChHHHHHHHHhhcCCC
Q psy4130 228 LSDPSIQQVFGELFANPG 245 (314)
Q Consensus 228 ~~~p~~~~~l~~~~~~~~ 245 (314)
|.+..+..+++..+.+++
T Consensus 588 P~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 588 PQESSVFALLGKIYKRLG 605 (638)
T ss_pred cchHHHHHHHHHHHHHHc
Confidence 778888888887776654
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3.7e-19 Score=168.05 Aligned_cols=208 Identities=13% Similarity=0.040 Sum_probs=118.7
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.....|++++|+.+|+++++++|++ ...++.++.++...++. ++.... .+....+|.++.+++.+|.+++..|+
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l~P~~-~~~~~~la~~~~~~g~~~eA~~~~----~~al~~~p~~~~~~~~lg~~~~~~g~ 414 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIELDPRV-TQSYIKRASMNLELGDPDKAEEDF----DKALKLNSEDPDIYYHRAQLHFIKGE 414 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3344566666666666666666633 12233444444433322 111111 11223345556666666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
+++|+.+|++++.++|++..++.++|.++..+|++++|+..|++++...|+++.++..+|.++...|++++|+..|++++
T Consensus 415 ~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 415 FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhCCCCHHHH------HHHHH-HHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 185 ELDPNDPLYA------NNMQA-AMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 185 ~~~p~~~~~~------~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
.++|++...+ .+.+. ++...|++++|. ..+..+....+.++..+..++.++...
T Consensus 495 ~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~------~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 495 ELEKETKPMYMNVLPLINKALALFQWKQDFIEAE------NLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred hcCCccccccccHHHHHHHHHHHHHHhhhHHHHH------HHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 6666532221 11122 222346666665 555555555555555566666665553
No 6
>KOG1126|consensus
Probab=99.81 E-value=3e-19 Score=158.96 Aligned_cols=182 Identities=18% Similarity=0.213 Sum_probs=160.6
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES--LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
|-.+-.+++++.||+||++|++++|++ .-.+..++. +.....+.+...+ ..++..+|.+..+|+.+|.+|.+
T Consensus 428 GNcfSLQkdh~~Aik~f~RAiQldp~f-aYayTLlGhE~~~~ee~d~a~~~f-----r~Al~~~~rhYnAwYGlG~vy~K 501 (638)
T KOG1126|consen 428 GNCFSLQKDHDTAIKCFKRAIQLDPRF-AYAYTLLGHESIATEEFDKAMKSF-----RKALGVDPRHYNAWYGLGTVYLK 501 (638)
T ss_pred cchhhhhhHHHHHHHHHHHhhccCCcc-chhhhhcCChhhhhHHHHhHHHHH-----HhhhcCCchhhHHHHhhhhheec
Confidence 334455899999999999999999966 222333333 3333344444444 55677889999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
+++++.|.-+|++|+.++|.+......+|.++.++|+.++|+..+++|+.++|.++-..+..|.+++.++++++|+..++
T Consensus 502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE 581 (638)
T ss_pred cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.-++-|++..+++.+|.++.++|+.+.|.
T Consensus 582 eLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 582 ELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 999999999999999999999999999997
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.81 E-value=5.5e-19 Score=164.34 Aligned_cols=208 Identities=11% Similarity=0.010 Sum_probs=163.8
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-----h-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-----D-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
..+++++|+.+|+++++++|++. ..+..++.++..... . ...........++...+|+++.++..+|.++...
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a-~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSI-APYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 45678999999999999999552 234445544432211 0 0001111123455667888999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..++.++.+++..|++++|+..+++
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887888888889999999999999
Q ss_pred HHhhC-CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 183 AAELD-PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 183 al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
++..+ |+++.++..++.++..+|++++|. ..+.......+.+...+..+...+..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~------~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELAR------KLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHH------HHHHHhhhccchhHHHHHHHHHHHhc
Confidence 99875 788999999999999999999997 55544444434444445555544443
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.1e-18 Score=162.91 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=151.8
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCC--chhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPA--SNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~--~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
.+++++|+++|+++++.++..+.. .+..++.++...++. ++... +.+....+|.....|..+|.++...|+++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~----~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD----LSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 367889999999999775321132 233444455444432 22222 13334456777888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+|+..|+++++.+|.++.+|+.+|.++...|++++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++..
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 187 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
.|+++.++..+|.++...|++++|+ ..+..+....+.+..
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~------~~~~~Al~l~p~~~~ 502 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAI------EKFDTAIELEKETKP 502 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHH------HHHHHHHhcCCcccc
Confidence 9999999999999999999999997 777777766655433
No 9
>KOG0548|consensus
Probab=99.81 E-value=1.5e-17 Score=144.91 Aligned_cols=205 Identities=27% Similarity=0.374 Sum_probs=162.7
Q ss_pred HHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-HHHHhchhhhhhhhccCCCCCChhhHHHHHH
Q psy4130 13 ITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES-LFQLYYKDEVLQWYSNINFSPTEEVKIEAEK 91 (314)
Q Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (314)
..+|..++...|-.+...++++.|+.+|++++...-+ +...-.. ........ ... ..-.+|..+..
T Consensus 294 ~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----~~~ls~lk~~Ek~~k~-~e~--------~a~~~pe~A~e 360 (539)
T KOG0548|consen 294 YKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----PDLLSKLKEAEKALKE-AER--------KAYINPEKAEE 360 (539)
T ss_pred HHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----HHHHHHHHHHHHHHHH-HHH--------HHhhChhHHHH
Confidence 3456666666777777889999999999998875541 1110000 11111111 111 11234455677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 171 (314)
....|+.+++.|+|..|+.+|.++|..+|+++.+|.|+|.||.+++++..|+.+++++++++|++..+|.+.|.++..+.
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+|+.|.+.|.++++++|++.++...+..|...+...... .+..+..+.||+++.++...
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~----------ee~~~r~~~dpev~~il~d~ 499 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETP----------EETKRRAMADPEVQAILQDP 499 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCH----------HHHHHhhccCHHHHHHHcCH
Confidence 999999999999999999999999999998876333333 36667788999998775543
No 10
>KOG1155|consensus
Probab=99.80 E-value=9.4e-19 Score=149.74 Aligned_cols=208 Identities=17% Similarity=0.122 Sum_probs=169.4
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
......+++.|+..|+.+.+.+|-..++.+..-..+|............ +.....+...++...-+|+.|.-+++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA----~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA----QNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH----HHHHHhccCCccceeeehhHHHHHHhH
Confidence 3445789999999999999999977666664434455444433222221 122344556677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
++|+.+|+++++++|....+|..+|.=|..+++...|+..|++|+.++|.+-.+|+.||.+|..++-+.=|+-+|++|++
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+.|+++..|..||.||.++++.++|+ .-+..+...--.+......+++++.+
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAi------KCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAI------KCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHH------HHHHHHHhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999998 55555444333344555566666555
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.79 E-value=8.9e-18 Score=128.40 Aligned_cols=114 Identities=19% Similarity=0.150 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 171 (314)
++.+|.++...|++++|+..|++++..+|.+..+|.++|.++...|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
++++|+..|++++++.|+++.++.+++.+...++
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887664
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.75 E-value=3.6e-17 Score=158.83 Aligned_cols=200 Identities=15% Similarity=0.131 Sum_probs=153.8
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
...|++++|+.+|++++...|.. .....++..+...++. ++..+.. +.....|.....+..++......|+++
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~--~a~~~la~all~~Gd~~eA~~~l~----qAL~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSN--EDLLAAANTAQAAGNGAARDRWLQ----QAEQRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCc--HHHHHHHHHHHHCCCHHHHHHHHH----HHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence 45778888888888877665521 1223334444444432 2222221 112233444555666666667779999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+|+..|+++++.+|+ +.++.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|++++++
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999996 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 187 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+|+++.++.+++.++..+|++++|. ..+..++...|++..+...++.+
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~------~~l~~Al~l~P~~a~i~~~~g~~ 720 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQ------HYARLVIDDIDNQALITPLTPEQ 720 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHhcCCCCchhhhhhhHH
Confidence 9999999999999999999999998 77777777777766555444433
No 13
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.75 E-value=8.7e-17 Score=126.52 Aligned_cols=151 Identities=17% Similarity=0.052 Sum_probs=129.8
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
.|+.+...|++..|...++++|+.+| .+ ..+|..++.+|.+.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DP---s~-----------------------------------~~a~~~~A~~Yq~~ 82 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDP---SY-----------------------------------YLAHLVRAHYYQKL 82 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc---cc-----------------------------------HHHHHHHHHHHHHc
Confidence 44555667888888888888888888 33 34788888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
|+.+.|.+.|++++.++|.+.+++.|.|..+..+|++++|.+.|++|+.. .|..+..|-++|.|..+.|+++.|..+|
T Consensus 83 Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l 162 (250)
T COG3063 83 GENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYL 162 (250)
T ss_pred CChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999864 2345688999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 181 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+++++++|+++.....++..+...|++-.|.
T Consensus 163 ~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 163 KRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999999999999999998884
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.75 E-value=6.4e-17 Score=153.08 Aligned_cols=209 Identities=11% Similarity=0.052 Sum_probs=113.8
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
......|+++.|+..|++++..+|+++ .....++.++...+..+.+.. .+.+.....|.++.++..+|.++...|+
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~-~a~~~la~~l~~~g~~~~Ai~---~l~~Al~l~P~~~~a~~~la~~l~~~g~ 159 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNVCQP-EDVLLVASVLLKSKQYATVAD---LAEQAWLAFSGNSQIFALHLRTLVLMDK 159 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 334446666666666666666666442 223333444433332211111 0111122333344444444444444444
Q ss_pred HHHHHHHHHHHHHcCCCCHHHH----------------------------------HHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYY----------------------------------CNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~----------------------------------~~la~~~~~~~~~~~A~~~~~~al 150 (314)
+++|+..+++++..+|.++.++ ..++.++...|++++|+..+++++
T Consensus 160 ~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 160 ELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444444443333222 223445555666666666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 151 KIDPHYAKAYGRMGLAYTQMNDYKA----ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 151 ~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
..+|+++.+++.+|.++...|++++ |+..|+++++++|++..++..++.++...|++++|. ..+..+...
T Consensus 240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~------~~l~~al~l 313 (656)
T PRK15174 240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI------PLLQQSLAT 313 (656)
T ss_pred hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHh
Confidence 6666666666666666666666664 566666666666666666666666666666666666 666666666
Q ss_pred ccCChHHHHHHHHhhcC
Q psy4130 227 VLSDPSIQQVFGELFAN 243 (314)
Q Consensus 227 ~~~~p~~~~~l~~~~~~ 243 (314)
.|.++.++..++.++..
T Consensus 314 ~P~~~~a~~~La~~l~~ 330 (656)
T PRK15174 314 HPDLPYVRAMYARALRQ 330 (656)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 66666666666655444
No 15
>KOG1125|consensus
Probab=99.75 E-value=5e-18 Score=149.04 Aligned_cols=210 Identities=15% Similarity=0.064 Sum_probs=172.4
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
......|++.+|+=+|+.+++.+|.+.+ ...+|+........+..... .+.++.+.+|++..++..+|..|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~hae-AW~~LG~~qaENE~E~~ai~---AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAE-AWQKLGITQAENENEQNAIS---ALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHH-HHHHhhhHhhhccchHHHHH---HHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 3445588899999999999999994422 24455665555544322222 3456678899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC-------------------------------------------CHHHHHHHHHHHHHccCHHH
Q psy4130 105 PEQAVIEYSKAIDCDNS-------------------------------------------NPVYYCNRAASNNKLKNYKL 141 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~-------------------------------------------~~~~~~~la~~~~~~~~~~~ 141 (314)
-.+|+.++.+.|...|. +++++..||.+|...|+|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999999988765432 45788899999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHH
Q psy4130 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLS 221 (314)
Q Consensus 142 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 221 (314)
|++||+.||..+|++...|.+||-++..-.+.++|+..|++|+++.|....++++||.+++.+|.|.+|+ +.+.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~------~hlL 522 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV------KHLL 522 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH------HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 7777
Q ss_pred HHHHhccC----------ChHHHHHHHHhhcCC
Q psy4130 222 EMSTKVLS----------DPSIQQVFGELFANP 244 (314)
Q Consensus 222 ~~~~~~~~----------~p~~~~~l~~~~~~~ 244 (314)
.++..... +..+|..+...+.-+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 76654433 235788887665543
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=9.1e-17 Score=152.02 Aligned_cols=146 Identities=9% Similarity=0.034 Sum_probs=132.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL----ALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
...++.++...|++++|+..|++++..+|+++.++.++|.++...|++++ |+..|++++.++|+++.++..+|.++
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999986 89999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
...|++++|+..+++++.++|+++.++..++.++...|++++|. ..+..+....+.++.....++.++..
T Consensus 295 ~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~------~~l~~al~~~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 295 IRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS------DEFVQLAREKGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHhCccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 77777777777776655555555544
No 17
>KOG1155|consensus
Probab=99.74 E-value=8.5e-17 Score=137.89 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=113.0
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
..++++++|+.+|+++++++|.+ .+.+..+|.-|.......++.. .+..+.+.+|.+.++|+.+|.+|.-.+-+.=
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~-~~aWTLmGHEyvEmKNt~AAi~---sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y 416 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKY-LSAWTLMGHEYVEMKNTHAAIE---SYRRAVDINPRDYRAWYGLGQAYEIMKMHFY 416 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcch-hHHHHHhhHHHHHhcccHHHHH---HHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence 34778899999999999999955 3333344444443333222221 1234455666666666666666666666666
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE-- 185 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 185 (314)
|+-+|++|+.+-|.++..|..+|.||.+.++.++|+.+|.+++..+..+..++..||.+|.++++.++|..+|++.++
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred -----hCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 186 -----LDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 186 -----~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
.+|+-..+...|+.-+.+.+++++|
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 3343444555566666666666666
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=4.4e-16 Score=128.55 Aligned_cols=170 Identities=19% Similarity=0.140 Sum_probs=136.4
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
....|++++|++.++++++.+| . +...+..+|.++...|+++
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~p---~-----------------------------------~~~~~~~la~~~~~~~~~~ 82 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHDP---D-----------------------------------DYLAYLALALYYQQLGELE 82 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc---c-----------------------------------cHHHHHHHHHHHHHcCCHH
Confidence 3446677777777777777666 2 2346778888999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
+|+..|++++..+|.+..++.++|.++...|++++|+..+++++... |.....+..+|.++...|++++|...|.+++
T Consensus 83 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 83 KAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999888889999999999999999999999998754 4566788889999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 185 ELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
..+|++..++..++.++...|++++|. ..+.......+.++..+..+..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 163 QIDPQRPESLLELAELYYLRGQYKDAR------AYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred HhCcCChHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHH
Confidence 999988888999999999999999887 66666666555555555444444
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.73 E-value=1.3e-16 Score=160.36 Aligned_cols=212 Identities=16% Similarity=0.145 Sum_probs=166.5
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCC-CCChhhH---------HHHHHH
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINF-SPTEEVK---------IEAEKY 92 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~---------~~~~~~ 92 (314)
|......|++++|+..|+++++.+|++ ......++.++...++.+ +......... ....... ......
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 444556899999999999999999955 234456666776665432 3322211111 1111000 012233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH------
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA------ 166 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~------ 166 (314)
..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|++.|+++++++|++..++..++.+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 45688999999999999999999999999999999999999999999999999999999999998776655444
Q ss_pred ------------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 167 ------------------------------------YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 167 ------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
+...|++++|+..|+++++++|+++.+++.++.++...|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45679999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130 211 SGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA 242 (314)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 242 (314)
. ..+..++...+.+|+.+..++.++.
T Consensus 515 ~------~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 515 D------ALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred H------HHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 8 8888888888899987766665443
No 20
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=1.5e-15 Score=130.41 Aligned_cols=124 Identities=19% Similarity=0.151 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..+..|+.+|.++...|++++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|++..+|.++|.+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIA 141 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+...|++++|+..|+++++++|+++.....+ .+....++.++|.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~ 185 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAK 185 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHH
Confidence 9999999999999999999999987422222 2334556777776
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.71 E-value=6.6e-16 Score=138.27 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=159.8
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.....+++++|+..|+++++.+|++. .....++.++...+.. .+.....................+..+|.++...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETV-ELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34567899999999999999999432 2344555566555543 222222222222222223345678999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-----KAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
+++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|.+. ..+..+|.++...|++++|+..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888753 3567889999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC-hHHHHHHHHhhcC
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD-PSIQQVFGELFAN 243 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-p~~~~~l~~~~~~ 243 (314)
|+++++.+|++..++..++.++...|++++|. ..+..+....+.+ +..+..+..++..
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAI------EALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 6666655544433 2334445544433
No 22
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=2.1e-16 Score=120.85 Aligned_cols=123 Identities=13% Similarity=0.141 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188 (314)
Q Consensus 109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (314)
...|+++++++|++ ++.+|.++...|++++|+.+|++++.++|.+..+|+.+|.++...|++++|+..|+++++++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999875 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+++.+++++|.++..+|++++|+ ..+..++...+.+++.+...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi------~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAR------EAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999999999999 99999999999999988777765
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=2.4e-15 Score=134.63 Aligned_cols=207 Identities=14% Similarity=0.087 Sum_probs=134.0
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCC-CCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINF-SPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
+...|++++|+.+|+++++.+|.. ......++.++...++.. +......... ............+..+|..+...|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFA-EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcch-HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 344677777888888877776622 112223333444433322 2222111111 0111111233456677777788888
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-AKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
+++|+..|+++++.+|.+..+++.+|.++...|++++|+..+++++..+|.+ ...+..++.++...|++++|+..++++
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888777778888888888888888888888888777765 356677778888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
++.+|+...+ ..++.++...|++++|. ..+.++.+..|.++.+..++...+
T Consensus 276 ~~~~p~~~~~-~~la~~~~~~g~~~~A~------~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 276 LEEYPGADLL-LALAQLLEEQEGPEAAQ------ALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHhCCCchHH-HHHHHHHHHhCCHHHHH------HHHHHHHHhCcCHHHHHHHHHHhh
Confidence 8887766443 77778888888888886 666666666666665555555443
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.70 E-value=6e-16 Score=150.36 Aligned_cols=177 Identities=12% Similarity=-0.037 Sum_probs=150.3
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHh---c-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLY---Y-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
.....|++++|+.+|+++++.+| ........ +.... + ..++.... .+.....|. +..+..+|.++.+
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P---~~~~l~~~-La~~l~~~Gr~~eAl~~~----~~AL~l~P~-~~a~~~LA~~l~~ 621 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL---GDNALYWW-LHAQRYIPGQPELALNDL----TRSLNIAPS-ANAYVARATIYRQ 621 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC---ccHHHHHH-HHHHHHhCCCHHHHHHHH----HHHHHhCCC-HHHHHHHHHHHHH
Confidence 34568899999999999999998 44332221 22111 2 23333332 223344554 7789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.|++++|+..|++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+..|+
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++++++|++..+....+.+.....+++.|.
T Consensus 702 ~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 702 LVIDDIDNQALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred HHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999888886
No 25
>KOG0547|consensus
Probab=99.70 E-value=1.7e-16 Score=136.88 Aligned_cols=172 Identities=17% Similarity=0.165 Sum_probs=124.7
Q ss_pred HHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHH
Q psy4130 14 TFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYK 93 (314)
Q Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (314)
.++..++...|.....+|+.-.|.+.|+++|.++|.+ ...++.++..|......+.-.- ....+...+|.+++.|+
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~---~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWK---DFNKAEDLDPENPDVYY 398 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHH---HHHHHHhcCCCCCchhH
Confidence 5566666677777777888888888888888888844 2334444545544433222111 22344566777788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 173 (314)
.+|..++-.++|++|+..|+++++++|.+.-++..++.+.+++++++++...|+.+++..|+.++.+...|.++..+++|
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877777777777777
Q ss_pred HHHHHHHHHHHhhCCC
Q psy4130 174 KAALEAYTKAAELDPN 189 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~ 189 (314)
+.|++.|.+++++.|.
T Consensus 479 d~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHhhccc
Confidence 7777777777777766
No 26
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=1e-15 Score=153.86 Aligned_cols=212 Identities=13% Similarity=0.074 Sum_probs=143.1
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCCh-----hhHHHHHHHHHHHHHH
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTE-----EVKIEAEKYKNLGNTA 99 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~ 99 (314)
..+...|++++|+++|+++++++|++. .....++.+|......++..+.......... ........+..+|..+
T Consensus 393 ~~~~~~g~~~eA~~~y~~aL~~~p~~~-~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 393 DVAMARKDYAAAERYYQQALRMDPGNT-NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344456667777777777777777331 1122333344322222222221111000000 0011133466778888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH--------------------
Q psy4130 100 MQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA-------------------- 159 (314)
Q Consensus 100 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------- 159 (314)
...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..++++++.+|+++.+
T Consensus 472 ~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~ 551 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAH 551 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 889999999999999999999999999999999999999999999999988888876643
Q ss_pred ------------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 160 ------------------------------------------------------YGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 160 ------------------------------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
+..+|.++...|++++|+..|+++++
T Consensus 552 l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 552 LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34466677778888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.+|+++.++..++.++...|++++|. ..+.......+.++..+..++.++..
T Consensus 632 ~~P~~~~a~~~la~~~~~~g~~~eA~------~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 632 REPGNADARLGLIEVDIAQGDLAAAR------AQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHH------HHHHHHhccCCCChHHHHHHHHHHHh
Confidence 88888888888888888888888887 66665555556667766666666544
No 27
>PRK12370 invasion protein regulator; Provisional
Probab=99.69 E-value=4.4e-16 Score=144.99 Aligned_cols=161 Identities=14% Similarity=0.026 Sum_probs=141.5
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 78 NFSPTEEVKIEAEKYKNLGNTAMQQ---------DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
..++...+|..+.+|..+|.++... +++++|+..++++++++|+++.++..+|.++...|++++|+..|++
T Consensus 284 ~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 363 (553)
T PRK12370 284 LTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQ 363 (553)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3455677888899999999887633 4589999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc-
Q psy4130 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV- 227 (314)
Q Consensus 149 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 227 (314)
+++++|+++.+++.+|.++...|++++|+..++++++++|.++.++..++.++...|++++|. ..+.......
T Consensus 364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~------~~~~~~l~~~~ 437 (553)
T PRK12370 364 ANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAI------RLGDELRSQHL 437 (553)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHH------HHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999888777777788899999997 6666666654
Q ss_pred cCChHHHHHHHHhhcCC
Q psy4130 228 LSDPSIQQVFGELFANP 244 (314)
Q Consensus 228 ~~~p~~~~~l~~~~~~~ 244 (314)
+.+|..+..++.++...
T Consensus 438 p~~~~~~~~la~~l~~~ 454 (553)
T PRK12370 438 QDNPILLSMQVMFLSLK 454 (553)
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 66788888888776554
No 28
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.69 E-value=8.4e-16 Score=150.99 Aligned_cols=209 Identities=16% Similarity=0.081 Sum_probs=156.4
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
......|++++|+++|+++++.+|++. .....++.++...+... +.... .+.....|.+...+..++.++...|
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~ 547 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIEPDFF-PAAANLARIDIQEGNPDDAIQRF----EKVLTIDPKNLRAILALAGLYLRTG 547 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCcCcHHHHHHHHHHHHHcC
Confidence 344557888888999988888888442 22334444554444322 22221 1223344556777888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
++++|+..+++++..+|.+...+..++.++...|++++|+..+++++...|.++..|..+|.++...|++++|+..|+++
T Consensus 548 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 627 (899)
T TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627 (899)
T ss_pred CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
++.+|.++.++..++.++...|++++|. ..+..+....+.++..+..+..++...
T Consensus 628 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 628 LALQPDSALALLLLADAYAVMKNYAKAI------TSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 8888888888888888888888888887 777777777777777777777665553
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=4.4e-15 Score=116.97 Aligned_cols=152 Identities=17% Similarity=0.081 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
..-..+...+|.-|+..|++..|...++++|+.+|.+..+|..+|.+|.+.|+.+.|.+.|++|++++|++.+++.+.|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 166 AYTQMNDYKAALEAYTKAAEL--DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.++.+|++++|...|++|+.. .|.-...+.|+|.|..+.|+.+.|. ..+...+...++.|.....+......
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~------~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAE------EYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH------HHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 999999999999999999984 2345779999999999999999998 88888888888888665555555443
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.68 E-value=3.2e-15 Score=146.91 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=138.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
..+..+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 199 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
|.++...|++++|+..|++++..+|+++.++..++.++...|++++|. ..+..+.+..+.++......+.+
T Consensus 200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~ 270 (899)
T TIGR02917 200 GDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAE------KHADALLKKAPNSPLAHYLKALV 270 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 77777777777776655444443
No 31
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.67 E-value=5.1e-15 Score=111.47 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
++.-+..+.+|..++..|++++|...|+..+.++|.++..|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
|++..|+.+.|++.|+.++.....+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999987443
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=7.7e-15 Score=118.13 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCcHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASN-NKLKN--YKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~ 160 (314)
.+|+++..|..+|.++...|++++|+..|+++++++|+++.++.++|.++ ...|+ +++|...++++++.+|+++.++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 34445668888999999999999999999999999999999999998875 66677 5889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 192 (314)
+.+|.+++..|++++|+.+|+++++++|.+..
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999988886543
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=5e-16 Score=132.76 Aligned_cols=208 Identities=19% Similarity=0.145 Sum_probs=120.3
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....++++.|+.+|++++..++..+.+.. .+..++.......+.... ...-. ...++..+.....++...+++
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~~~~~~~-~l~~l~~~~~~~~A~~~~----~~~~~-~~~~~~~l~~~l~~~~~~~~~ 126 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKANPQDYE-RLIQLLQDGDPEEALKLA----EKAYE-RDGDPRYLLSALQLYYRLGDY 126 (280)
T ss_dssp -----------------------------------------------------------------------H-HHHTT-H
T ss_pred cccccccccccccccccccccccccccccc-cccccccccccccccccc----ccccc-cccccchhhHHHHHHHHHhHH
Confidence 445688999999999999999885434422 222232222222222221 11111 224456677778888999999
Q ss_pred HHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCD--NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 106 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
+++...++++.... +.++.+|..+|.++.+.|++++|+.+++++++++|+++.++..++.++...|+++++...+...
T Consensus 127 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~ 206 (280)
T PF13429_consen 127 DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRL 206 (280)
T ss_dssp HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999977655 6788899999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
.+..|.++..+..++.++..+|++++|. ..+....+..+.||.+...++.++...|
T Consensus 207 ~~~~~~~~~~~~~la~~~~~lg~~~~Al------~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 207 LKAAPDDPDLWDALAAAYLQLGRYEEAL------EYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHH-HTSCCHCHHHHHHHHHHT-HHHHH------HHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred HHHCcCHHHHHHHHHHHhcccccccccc------cccccccccccccccccccccccccccc
Confidence 8888888889999999999999999998 8999999999999999999998877754
No 34
>PLN02789 farnesyltranstransferase
Probab=99.66 E-value=1.1e-14 Score=125.27 Aligned_cols=151 Identities=12% Similarity=0.001 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQD-KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY--KLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.+..+|..++.++...+ ++++++..+++++..+|.+..+|+.++.++...++. ++++.++.++++.+|++..+|..+
T Consensus 69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R 148 (320)
T PLN02789 69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHR 148 (320)
T ss_pred hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34456666666666666 467777777777777777777777777777666653 566777777777777777777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc---cc----cCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN---SS----SASGSGGVFPGLSEMSTKVLSDPSIQQV 236 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---~~----~A~~~~~~~~~~~~~~~~~~~~p~~~~~ 236 (314)
+.++...|++++|++++.++++.+|.|..+|..++.+....++ .+ ++. .-..+.+...|.|...|..
T Consensus 149 ~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el------~y~~~aI~~~P~N~SaW~Y 222 (320)
T PLN02789 149 QWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL------KYTIDAILANPRNESPWRY 222 (320)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH------HHHHHHHHhCCCCcCHHHH
Confidence 7777777777777777777777777777777777776665522 21 111 2223555666666677777
Q ss_pred HHHhhcC
Q psy4130 237 FGELFAN 243 (314)
Q Consensus 237 l~~~~~~ 243 (314)
++.++..
T Consensus 223 l~~ll~~ 229 (320)
T PLN02789 223 LRGLFKD 229 (320)
T ss_pred HHHHHhc
Confidence 7766655
No 35
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.66 E-value=3.4e-15 Score=120.18 Aligned_cols=131 Identities=15% Similarity=0.089 Sum_probs=120.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCC--HHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY-TQMND--YKAALE 178 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~ 178 (314)
.++.++++..++++++.+|+++..|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 677899999999999999999999999999999999999999999999999999999999999985 67787 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 179 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
.++++++.+|++..++..+|.++...|++++|+ ..+..+.+..+.+.+-..++.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai------~~~~~aL~l~~~~~~r~~~i~ 185 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAI------ELWQKVLDLNSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCCCCccHHHHHH
Confidence 999999999999999999999999999999998 888888887777665554443
No 36
>KOG2003|consensus
Probab=99.66 E-value=1.3e-14 Score=124.58 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=184.5
Q ss_pred HHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch--hhhhhhhccCCCCCChhhHH
Q psy4130 10 TSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK--DEVLQWYSNINFSPTEEVKI 87 (314)
Q Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 87 (314)
+++-.|-...+.+.|-.....|++++|.+.|.+++..+... ...-++++.-+...+. .+..++. +.-..-.+
T Consensus 483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~-----klh~il~n 556 (840)
T KOG2003|consen 483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFL-----KLHAILLN 556 (840)
T ss_pred hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHH-----HHHHHHHh
Confidence 33334444456677777788999999999999999877733 2233445554444442 2222321 11223346
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
++++++.++++|....+..+|+++|-++..+-|+++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+..-+||..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|. ..+.+..+++|.|-+-...+-.+....
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~------d~yk~~hrkfpedldclkflvri~~dl 707 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF------DLYKDIHRKFPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH------HHHHHHHHhCccchHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999 999999999999998777776665554
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.66 E-value=6.8e-15 Score=126.39 Aligned_cols=154 Identities=18% Similarity=0.053 Sum_probs=114.3
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCC---chhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPA---SNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....+.+|..+.+++...|-.++. .++..+.+|...+....+.. ...+....+|+++.+|+.+|.++...|++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~---~~~~Al~l~P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARN---DFSQALALRPDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHHCCCH
Confidence 3467788999999999644422132 34455556666554332222 12334556778889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
++|+..|+++++++|++..+|.++|.++...|++++|+..++++++++|+++.....+ .+....+++++|+..|.+++.
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999987422222 223456678888888866554
Q ss_pred h
Q psy4130 186 L 186 (314)
Q Consensus 186 ~ 186 (314)
.
T Consensus 194 ~ 194 (296)
T PRK11189 194 K 194 (296)
T ss_pred h
Confidence 3
No 38
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.65 E-value=5.7e-15 Score=122.95 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=129.9
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+..|++++..+| .++ ....+++.+|.+++..|++
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p---~~~--------------------------------~~~~a~~~la~~~~~~~~~ 86 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYP---FSP--------------------------------YAEQAQLDLAYAYYKSGDY 86 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---Cch--------------------------------hHHHHHHHHHHHHHhcCCH
Confidence 33457788888888888888888 332 2245789999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCcHHHH--------------
Q psy4130 106 EQAVIEYSKAIDCDNSNPV---YYCNRAASNNKL--------KNYKLALRDCQIAIKIDPHYAKAY-------------- 160 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-------------- 160 (314)
++|+..|+++++.+|+++. +++.+|.++... |++++|+..+++++..+|++..++
T Consensus 87 ~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~ 166 (235)
T TIGR03302 87 AEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLA 166 (235)
T ss_pred HHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHH
Confidence 9999999999999998776 689999999887 889999999999999999986442
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccccCC
Q psy4130 161 ---GRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 161 ---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..+|.++...|++.+|+..|++++...|+. +.++..++.++..+|++++|.
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 467888999999999999999999997764 579999999999999999997
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.64 E-value=8.1e-15 Score=111.16 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
..+|.+....+.+|..++..|++++|+..|++++..+|.++.+|.++|.++...|++++|+.++++++..+|.++..++.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34455667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
+|.++...|++++|+..|+++++++|++.........+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999987755444433
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=9.3e-16 Score=131.10 Aligned_cols=180 Identities=21% Similarity=0.225 Sum_probs=111.2
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
...+++++|+++++++++.+++. .... .+..++...... ........... ....+.++..|..+|.++.+.|+++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~-~~l~-~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDP-RYLL-SALQLYYRLGDYDEAEELLEKLEE--LPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH---T---T-HHHHHHHHHHHHHCCHHH
T ss_pred ccccccccccccccccccccccc-chhh-HHHHHHHHHhHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45789999999999998876621 1111 112233333322 22221111110 1223467889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+|+.+|+++++++|+++.++..++.++...|+++++...+.......|.++..|..+|.++..+|++++|+.+|+++++.
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 187 DPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 187 ~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+|+++.++..++.++...|+.++|.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp STT-HHHHHHHHHHHT---------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999999997
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.63 E-value=2.8e-14 Score=117.72 Aligned_cols=152 Identities=18% Similarity=0.160 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..+..+..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 167 YTQMNDYKAALEAYTKAAELD--PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
+...|++++|+..|++++... |.....+..++.++...|++++|. ..+.......+.++..+..++.++...
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE------KYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 999999999999999999864 456778999999999999999998 888888888888888888888776653
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=1.1e-14 Score=140.42 Aligned_cols=206 Identities=10% Similarity=0.017 Sum_probs=165.3
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
..+++++|+..|+++++..|..+.....+++.+|...+.. ++......+.................++..+...+++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 4688999999999999987643355455566666655543 333332222211110001113456777788899999999
Q ss_pred HHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 108 AVIEYSKAIDCDNS---------------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 108 A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
|+..++++...+|. ...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 99999999998773 235678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 173 YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+++|++.++++++++|++..+++.++.++..++++++|. ..+..+.+..|.+|.+..+-...
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~------~~~~~ll~~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD------VLTDDVVAREPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 88999999999999876655544
No 43
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.62 E-value=1.9e-14 Score=126.34 Aligned_cols=115 Identities=33% Similarity=0.482 Sum_probs=110.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 171 (314)
+...|..++..|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.++++++.++|.++.+|+++|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 66779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206 (314)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 206 (314)
++++|+..|+++++++|+++.+...++.|...+.+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999777643
No 44
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.62 E-value=5.2e-14 Score=113.21 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=143.0
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCchh-hHHH-HHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 32 GIEVAVECLCKAYDIPDNIDPASNV-DIES-LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 32 ~~~~Ai~~~~~al~~~p~~~~~~~~-~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
+...++..+-+.+..+| ++..+ .+.. ++.....+.... ...+.....+.+...+..+|...+..|+|..|+
T Consensus 48 q~~~a~~al~~~~~~~p---~d~~i~~~a~a~~~~G~a~~~l~----~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~ 120 (257)
T COG5010 48 QTQGAAAALGAAVLRNP---EDLSIAKLATALYLRGDADSSLA----VLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAV 120 (257)
T ss_pred hhhHHHHHHHHHHhcCc---chHHHHHHHHHHHhcccccchHH----HHhhhhccCcccHHHHHHHHHHHHHhcchHHHH
Confidence 44556677777888899 44333 2333 222222222221 123334455666677777999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..++++..+.|+++.+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|...+..+....+.
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHhcccccCC
Q psy4130 190 DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+..+..+++.+....|++++|.
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHH
Confidence 9999999999999999999995
No 45
>KOG1173|consensus
Probab=99.61 E-value=5e-15 Score=130.00 Aligned_cols=210 Identities=17% Similarity=0.142 Sum_probs=171.3
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
|..+...+++.+|..+|.++..++|++... ++..+..|...++.+.+-. .+..+....+....-...+|.-|...+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~fgpa-Wl~fghsfa~e~EhdQAma---aY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPTFGPA-WLAFGHSFAGEGEHDQAMA---AYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCccccHH-HHHHhHHhhhcchHHHHHH---HHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 444556789999999999999999988433 5566667766665433221 112222333444445778899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-------PHYAKAYGRMGLAYTQMNDYKAA 176 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A 176 (314)
+++-|...|.+|+.+.|.++-.+..+|.+.+..+.|.+|+.+|+.++..- +.....+.+||-++.+++.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999432 22446689999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 177 LEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+.+|++++.+.|.++.++..+|.++..+|+.+.|+ ..+-.....-+.|.-+..+++.....
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai------d~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI------DHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH------HHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998 77777777777787788888877655
No 46
>KOG0553|consensus
Probab=99.61 E-value=6.4e-15 Score=120.58 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
+-+-+-|.-+.+.++|.+|+..|.+||.++|+++..|.+++.+|.++|.++.|++.++.++.+||.+..+|..||.++..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 44567788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 204 LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 204 ~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
+|++++|+ ..|..++..-|.|+..+..+..+.....
T Consensus 162 ~gk~~~A~------~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 162 LGKYEEAI------EAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred cCcHHHHH------HHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 99999999 8888899999999999988887755543
No 47
>KOG1125|consensus
Probab=99.60 E-value=1.1e-14 Score=128.30 Aligned_cols=186 Identities=13% Similarity=0.182 Sum_probs=143.3
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhh-----hhh--------hccCC-----------
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEV-----LQW--------YSNIN----------- 78 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~-----~~~--------~~~~~----------- 78 (314)
+|+.....++-..||..+++|++++|++.+. -..|+..|.+.+.... ..| +....
T Consensus 325 LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea-LmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s 403 (579)
T KOG1125|consen 325 LGITQAENENEQNAISALRRCLELDPTNLEA-LMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKS 403 (579)
T ss_pred hhhHhhhccchHHHHHHHHHHHhcCCccHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcC
Confidence 5666667888899999999999999944222 2233333322221100 000 00000
Q ss_pred --------------CCCChhhH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHH
Q psy4130 79 --------------FSPTEEVK--IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142 (314)
Q Consensus 79 --------------~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 142 (314)
..+....+ .++++...+|..|.-.++|++|+++|+.||...|.+...|..||..+..-.+.++|
T Consensus 404 ~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EA 483 (579)
T KOG1125|consen 404 FLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEA 483 (579)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHH
Confidence 00011122 56788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHhccccc
Q psy4130 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND----------PLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 143 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~l~~~~~~~~~~~~ 209 (314)
+..|.+|+++.|..+.++++||.++..+|.|++|.++|-.||.+.+.. ..+|..|-.++...++.+-
T Consensus 484 IsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 484 ISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 999999999999999999999999999999999999999999997651 2478888888777777763
No 48
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.59 E-value=7.2e-14 Score=116.33 Aligned_cols=156 Identities=15% Similarity=0.121 Sum_probs=135.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH--
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK-- 158 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 158 (314)
.....+..++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..++++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 4456678999999999999999999999999999999876 57899999999999999999999999999998775
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcccccCCC
Q psy4130 159 -AYGRMGLAYTQM--------NDYKAALEAYTKAAELDPNDPLYA-----------------NNMQAAMSNLNNSSSASG 212 (314)
Q Consensus 159 -~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~ 212 (314)
+++.+|.++... |++++|+..|++++..+|++..++ ..++.++...|++.+|+
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~- 186 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI- 186 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH-
Confidence 799999999886 889999999999999999986543 35678889999999998
Q ss_pred CCCCcchHHHHHHhccCCh---HHHHHHHHhhcCCC
Q psy4130 213 SGGVFPGLSEMSTKVLSDP---SIQQVFGELFANPG 245 (314)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~p---~~~~~l~~~~~~~~ 245 (314)
..+..+....+++| +.+..++.++...+
T Consensus 187 -----~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 187 -----NRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred -----HHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 88888888887765 56777777766543
No 49
>KOG2002|consensus
Probab=99.59 E-value=3.3e-14 Score=131.73 Aligned_cols=209 Identities=14% Similarity=0.107 Sum_probs=116.7
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh--hhhh--------------------------------h
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE--VLQW--------------------------------Y 74 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~--~~~~--------------------------------~ 74 (314)
.+++|-.|+.+|++++.++|....++.+.++.+|...+..+ ...| .
T Consensus 176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence 46677777777777777777666666666666555544322 2222 0
Q ss_pred ccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 75 SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN---SNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
......+-..++.+|.++..+++.++..|+|+.+...+..++.... --+..++.+|.+|..+|+|++|..+|.++++
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k 335 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK 335 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 1111122223344455555555555555555555555555554331 1233456666666666666666666666666
Q ss_pred hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc----ccccCCCCCCCcchHHHHHHh
Q psy4130 152 IDPHY-AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN----NSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 152 ~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~ 226 (314)
.+|++ .-+++.+|..+...|+++.|+.+|+++++..|++.+....||.+|...+ ..+.|. ..+......
T Consensus 336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~------~~l~K~~~~ 409 (1018)
T KOG2002|consen 336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKAS------NVLGKVLEQ 409 (1018)
T ss_pred cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHH------HHHHHHHhc
Confidence 66665 5566666666666666666666666666666666666666666666554 223333 344444555
Q ss_pred ccCChHHHHHHHHhhcC
Q psy4130 227 VLSDPSIQQVFGELFAN 243 (314)
Q Consensus 227 ~~~~p~~~~~l~~~~~~ 243 (314)
.+.|.+.|-.++.++..
T Consensus 410 ~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 410 TPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 55555666666655444
No 50
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.58 E-value=4.4e-14 Score=107.11 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=115.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..|++++..+|.+....+.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHH
Q psy4130 190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE 239 (314)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 239 (314)
++..++.++.++...|++++|. ..+....+..+.++..+.....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESAL------KALDLAIEICGENPEYSELKER 127 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhccccchHHHHHHH
Confidence 9999999999999999999998 8888888888888775544443
No 51
>KOG0547|consensus
Probab=99.56 E-value=2.3e-13 Score=117.85 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
...+.++...|..++-.|++..|...|+.+|.++|.+...|..+|.+|....+.++-..+|.+|..++|.++..|+.+|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQ 402 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQ 402 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHH
Confidence 34466677777777777777777777777777777777767777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+++-++++++|+..|++++.++|++.-++..++.+..++++++++. ..|.+..++.|+-|++...++.++..
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m------~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM------KTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 7777777777777777777777777777777777777777777776 67777777777777777776666554
No 52
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.56 E-value=1.4e-13 Score=129.39 Aligned_cols=138 Identities=4% Similarity=-0.056 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
..+.+++++..+|.+....|.+++|...++.+++++|++..++.+++.++.+.+++++|+..+++++..+|++..+++.+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
|.++..+|++++|+..|++++..+|+++.++..+|.++...|+.++|. ..+..++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~------~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR------DVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998 5555554433
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.6e-13 Score=110.45 Aligned_cols=185 Identities=12% Similarity=0.050 Sum_probs=145.1
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.....++.++|++.|..+++.+|.. -+.++.++.+|...++. .++..++.+..++.-.......+...+|.-|+..|-
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~d~~t-~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQEDPET-FEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HHHhhcCcchHHHHHHHHHhcCchh-hHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 3344567799999999999999944 34577788899888864 455556666666666666777888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-----AKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
++.|...|.........-..+.-.+-.+|....+|++|+...++.+++.+.. +..|+.|+..+....+.+.|+..
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999888888776544455677788888888888888888888888887764 35677788888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.++++.+|++..+-..+|.++...|+++.|+
T Consensus 203 l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV 234 (389)
T COG2956 203 LKKALQADKKCVRASIILGRVELAKGDYQKAV 234 (389)
T ss_pred HHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence 88888888888888888888888888888887
No 54
>KOG2002|consensus
Probab=99.54 E-value=2.7e-13 Score=125.85 Aligned_cols=203 Identities=14% Similarity=0.144 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCchhhHHH---HHHHhchhhhhhhhccCC-------------------------------
Q psy4130 33 IEVAVECLCKAYDIPDNIDPASNVDIES---LFQLYYKDEVLQWYSNIN------------------------------- 78 (314)
Q Consensus 33 ~~~Ai~~~~~al~~~p~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~------------------------------- 78 (314)
++.|..+|.-++...| ++.-..++. .|.......+..+++...
T Consensus 146 ~~~A~a~F~~Vl~~sp---~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP---DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCC---cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 7999999999999999 776666766 333222333333322211
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 79 FSPTEEVKIEAEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
.++...+|..+.++..+|.+..... .+..+...+.++...+|.+|.+...++.-++..|+|..+......++...-.
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 1111223344444444444433322 2444555555555555555556666666666666666666666666655422
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 156 ---YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND-PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 156 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
-+..+|++|.++..+|+|++|..+|.++++.+|++ .-.++.+|.+++..|+++.|. ..+..+....|+++
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~------~~fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESK------FCFEKVLKQLPNNY 376 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHH------HHHHHHHHhCcchH
Confidence 23458899999999999999999999999999998 778999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhcCC
Q psy4130 232 SIQQVFGELFANP 244 (314)
Q Consensus 232 ~~~~~l~~~~~~~ 244 (314)
+.-..++.++...
T Consensus 377 etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 377 ETMKILGCLYAHS 389 (1018)
T ss_pred HHHHHHHhHHHhh
Confidence 9999999887764
No 55
>KOG1129|consensus
Probab=99.52 E-value=2.2e-14 Score=118.38 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---YAKAY 160 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~ 160 (314)
.++.+.++...+|..|+-.++.+-|+.+|++.|.+.-.+++.++|+|.|.+..++++-++..|++|+..-.. -.++|
T Consensus 319 ~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvW 398 (478)
T KOG1129|consen 319 LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVW 398 (478)
T ss_pred cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhh
Confidence 344444444445555555555555555555555555556788999999999999999999999999987542 35899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS 229 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 229 (314)
+++|.+....|++.-|..+|+-++..+|++.+++.+|+.+..+.|+.++| ..+.+.++.++.
T Consensus 399 YNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A-------rsll~~A~s~~P 460 (478)
T KOG1129|consen 399 YNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA-------RSLLNAAKSVMP 460 (478)
T ss_pred hccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH-------HHHHHHhhhhCc
Confidence 99999999999999999999999999999999999999999999999999 455555554443
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.52 E-value=9.4e-13 Score=127.24 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
+.++..+|.++...|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..|++++|+..++++++++|+++.++..++.++...+..++|.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 9999999999999999999999999999999999888888775
No 57
>KOG0548|consensus
Probab=99.51 E-value=2.5e-13 Score=118.89 Aligned_cols=111 Identities=32% Similarity=0.511 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
-....|+..+..|+|+.|+.+|.+++.++|.+...|.|+..+|..+|+|++|+++..++++++|+++++|.++|.++..+
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130 171 NDYKAALEAYTKAAELDPNDPLYANNMQAAM 201 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 201 (314)
|+|++|+..|.+.|+.+|+|..++.+|+.++
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 9999999999999999999999999999998
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=7.4e-13 Score=106.63 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=141.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.+|++..+ ..++..+...|+-+.+..+..+++..+|.+......+|...+..|+|..|+..++++..++|+++++|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45666677 88999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
|.+|.+.|++++|...|.+++++.|+++.+..|++..+.-.|+++.|. ..+......-..|+.+.+.+.-+...
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~------~lll~a~l~~~ad~~v~~NLAl~~~~ 214 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE------TLLLPAYLSPAADSRVRQNLALVVGL 214 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH------HHHHHHHhCCCCchHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999996 55555555556688999888888776
Q ss_pred CCC
Q psy4130 244 PGQ 246 (314)
Q Consensus 244 ~~~ 246 (314)
.+.
T Consensus 215 ~g~ 217 (257)
T COG5010 215 QGD 217 (257)
T ss_pred cCC
Confidence 543
No 59
>PLN02789 farnesyltranstransferase
Probab=99.49 E-value=3.2e-12 Score=110.05 Aligned_cols=154 Identities=10% Similarity=0.009 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.+....++-.+-.++...+.+++|+..+.++|.++|.+..+|..++.++..++ ++++++..+.++++.+|++..+|..+
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 34555566555566778899999999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 164 GLAYTQMNDY--KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 164 g~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
+.++..+++. ++++..++++++.+|++..+|...+.++..+|++++++ ..+..+++.-+.|..+|...+.++
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL------~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDEL------EYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHH------HHHHHHHHHCCCchhHHHHHHHHH
Confidence 9999999874 78899999999999999999999999999999999998 888888888899999999988877
Q ss_pred cCC
Q psy4130 242 ANP 244 (314)
Q Consensus 242 ~~~ 244 (314)
...
T Consensus 187 ~~~ 189 (320)
T PLN02789 187 TRS 189 (320)
T ss_pred Hhc
Confidence 654
No 60
>KOG0550|consensus
Probab=99.49 E-value=4e-13 Score=114.10 Aligned_cols=155 Identities=25% Similarity=0.327 Sum_probs=125.0
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
.|....-..+.+.|+..|++++.++|+..+... ....+.....+...|+-.++.
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~--------------------------~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKS--------------------------ASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHh--------------------------HhhhHHHHHHHHhhhhhHhhc
Confidence 344455566777777777777777773322211 223455667899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSN----PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 178 (314)
|.|..|.++|..+|.++|++ +.+|.++|.+..++|+..+|+..++.+++++|...+++...|.|+..+++|++|++
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986 45799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 179 AYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 179 ~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
.|+++++...+ ......+..+...+
T Consensus 343 d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 343 DYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred HHHHHHhhccc-cchHHHHHHHHHHH
Confidence 99999998776 44444444444433
No 61
>KOG0543|consensus
Probab=99.48 E-value=8.1e-13 Score=112.72 Aligned_cols=127 Identities=24% Similarity=0.333 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---------------NPVYYCNRAASNNKLKNYKLALRDCQIA 149 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 149 (314)
.-..+......|+.+++.|+|..|...|++++..-.. -..++.|++.|+.++++|.+|+..+.++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 4455677889999999999999999999999875321 1257899999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 150 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
|.++|+|+.++|+.|.++..+|+++.|+..|+++++++|+|..+...+..|..+..++.+..
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988887776653
No 62
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.48 E-value=9.1e-13 Score=99.37 Aligned_cols=112 Identities=17% Similarity=0.108 Sum_probs=102.0
Q ss_pred HHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 115 AIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 115 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
...+. ++.-+..+.+|..+...|++++|.+.|+-...++|.+...|++||.++..+|++++|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34456 67778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 194 ANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
++++|.|+...|+.+.|. ..|..++...-.+|+
T Consensus 106 ~~~ag~c~L~lG~~~~A~------~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 106 PWAAAECYLACDNVCYAI------KALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHHHHHHcCCHHHHH------HHHHHHHHHhccChh
Confidence 999999999999999998 777777666645554
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.47 E-value=4.6e-12 Score=121.30 Aligned_cols=181 Identities=12% Similarity=0.094 Sum_probs=142.2
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
+....+|+++.|++.|+++++.+|+++.... .+..++...+..+ +.... .+.....+.....+..+|..+...|
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~----eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVY----ERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHH----HHhccCCCCCHHHHHHHHHHHHHcC
Confidence 3445689999999999999999995422222 3334444444332 22221 2222223344455666688999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...++..+|+..|+++
T Consensus 117 dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996554 55566666678887799999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++.+|++..++..+..++...|-...|.
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~ 223 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPAL 223 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 9999999999999999999998887774
No 64
>KOG1129|consensus
Probab=99.46 E-value=2.1e-13 Score=112.69 Aligned_cols=146 Identities=15% Similarity=0.221 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
++.+..++.+|.+..+...|+..|.+.++..|.+.......+.++..++++++|++.|+.+++.+|.++++.--+|.-|+
T Consensus 256 ~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF 335 (478)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh---HHHHHHHHh
Q psy4130 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP---SIQQVFGEL 240 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p---~~~~~l~~~ 240 (314)
.-++++-|+.+|++.+.+.-.+++.+.++|.|....++++-+. +.+..+.....++. ++|..++.+
T Consensus 336 Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L------~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 336 YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL------PSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH------HHHHHHHhhccCcchhhhhhhcccee
Confidence 6666666666666666666666666666666666666666665 55555554444322 455555544
No 65
>KOG2076|consensus
Probab=99.45 E-value=5.4e-12 Score=116.53 Aligned_cols=140 Identities=18% Similarity=0.147 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhh
Q psy4130 6 EDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEV 85 (314)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (314)
+.+.-.+...++.+-. ....|++++|++.+.+++..+|.+ ..++..++.+|...++.++...... .+...+
T Consensus 133 ~~l~~~l~~ll~eAN~-----lfarg~~eeA~~i~~EvIkqdp~~-~~ay~tL~~IyEqrGd~eK~l~~~l---lAAHL~ 203 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANN-----LFARGDLEEAEEILMEVIKQDPRN-PIAYYTLGEIYEQRGDIEKALNFWL---LAAHLN 203 (895)
T ss_pred cccCHHHHHHHHHHHH-----HHHhCCHHHHHHHHHHHHHhCccc-hhhHHHHHHHHHHcccHHHHHHHHH---HHHhcC
Confidence 3344444555554422 235799999999999999999977 5567789999999986654433211 123456
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
|.+.+.|..++....++|++.+|+-+|.+|++.+|.+....+.++.+|.++|++..|...|.+++.++|
T Consensus 204 p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 204 PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 667789999999999999999999999999999999999999999999999999999999999777766
No 66
>KOG0624|consensus
Probab=99.45 E-value=1.2e-11 Score=102.96 Aligned_cols=215 Identities=10% Similarity=0.071 Sum_probs=151.7
Q ss_pred HHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchh--hHHHHHHH------------hchhhhhhhhccCCC
Q psy4130 14 TFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNV--DIESLFQL------------YYKDEVLQWYSNINF 79 (314)
Q Consensus 14 ~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~--~l~~~~~~------------~~~~~~~~~~~~~~~ 79 (314)
||....++. |.....+|.+++|+.-|..+++.+|+...+... .+..+-.. .++...... ...
T Consensus 104 DF~~ARiQR-g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~---~i~ 179 (504)
T KOG0624|consen 104 DFMAARIQR-GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIE---MIT 179 (504)
T ss_pred cHHHHHHHh-chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHH---HHH
Confidence 676666655 445566999999999999999999965333211 11111111 011111111 111
Q ss_pred CCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130 80 SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA 159 (314)
Q Consensus 80 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 159 (314)
..++..|=++..+...+.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++-..
T Consensus 180 ~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 180 HLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred HHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 22344455677788888888888888888888888888888888888888888888888888888888888888875422
Q ss_pred H--------------------------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 160 Y--------------------------------------------------GRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 160 ~--------------------------------------------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
+ ..+..|+..-+++.+|+..+.+++.++|+
T Consensus 260 f~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 260 FPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCch
Confidence 1 12445555577888999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
+..++...+.+|.--..|+.|+ ..+..+.....+|..++.-+.
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI------~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAI------HDYEKALELNESNTRAREGLE 382 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH------HHHHHHHhcCcccHHHHHHHH
Confidence 9999999999999999999998 666666666666655544333
No 67
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.45 E-value=5.2e-12 Score=93.26 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGR 162 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 162 (314)
++.++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3578999999999999999999999999999876 5689999999999999999999999999999885 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (314)
+|.++...|++++|+..+++++...|++..+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999999999999999876543
No 68
>KOG1173|consensus
Probab=99.42 E-value=2.2e-12 Score=113.59 Aligned_cols=185 Identities=15% Similarity=0.111 Sum_probs=160.9
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
..++.+-.+..+..++.+|=+.+-.-++++.++........-.. ..+..+..|..+..|+..|..|...+++.+|.
T Consensus 257 ~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~l----sh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLL----SHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred cChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHH----HHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 55677888888999999996666666667766555444332222 12336677888999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
++|.++..++|....+|...|..+...+..++|+.+|..|-++-|........+|.-|..++.++.|.+.|..|+.+.|+
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~ 412 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS 412 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHH
Q psy4130 190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS 224 (314)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 224 (314)
++-++..+|.+....+.+.+|. ..+....
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~------~~f~~~l 441 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEAL------KYFQKAL 441 (611)
T ss_pred cchhhhhhhheeehHhhhHHHH------HHHHHHH
Confidence 9999999999999999999997 6555555
No 69
>KOG4234|consensus
Probab=99.41 E-value=7.8e-12 Score=96.60 Aligned_cols=120 Identities=33% Similarity=0.502 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 160 (314)
...+..+..-|+-++..|+|++|...|..||..+|..+ .+|.|+|.|+++++.++.|+..+.++|.++|.+..++
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 34567788899999999999999999999999999754 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
.+.+.+|.++.+|++|+..|.+.++.+|....+...+..+--...
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ 216 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKIN 216 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHH
Confidence 999999999999999999999999999998888777766644433
No 70
>KOG2076|consensus
Probab=99.41 E-value=1.3e-11 Score=114.15 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
+.....+...|+.++..|++++|...+.++++.+|.++.+|+.||.||..+|+.+++...+-.|-.++|.+...|..++.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL 228 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 228 (314)
...++|.+++|+-+|.+|+..+|.+.......+.++.+.|+...|. ..+..+.+..+
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am------~~f~~l~~~~p 272 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAM------ETFLQLLQLDP 272 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHH------HHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999998 77777777776
No 71
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.41 E-value=1.5e-11 Score=97.16 Aligned_cols=109 Identities=19% Similarity=0.269 Sum_probs=98.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK 158 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 158 (314)
....+..+..++.+|..+...|++++|+.+|++++...|+. ..++.++|.++...|++++|+..+++++...|.+..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 107 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS 107 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence 34466778899999999999999999999999999887653 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q psy4130 159 AYGRMGLAYTQMND--------------YKAALEAYTKAAELDPND 190 (314)
Q Consensus 159 ~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 190 (314)
++..+|.++...|+ +++|++.+++++..+|++
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99999999999887 678888888999989886
No 72
>KOG3060|consensus
Probab=99.40 E-value=3.4e-11 Score=96.43 Aligned_cols=174 Identities=16% Similarity=0.107 Sum_probs=131.3
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHhc-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDI--ESLFQLYY-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
..++.+.|..|+++.-...| .+..+.. +.++...+ .+++...+ .....++|.+.-.+...--+...+|+-
T Consensus 64 d~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~~~~~A~e~y----~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 64 DTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATGNYKEAIEYY----ESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhhchhhHHHHH----HHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 46677888888888766667 5544322 11333333 33333333 223445677777777777777788888
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---DYKAALEAYTK 182 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~ 182 (314)
.+||+.+...++..+.+.++|..++.+|...|+|++|.-|+++.+-+.|.++..+.++|.+++-+| +++-|.++|.+
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999988777 56778999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130 183 AAELDPNDPLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 183 al~~~p~~~~~~~~l~~~~~~~~~~~~ 209 (314)
+++++|.+..+++.+..|-..+-+...
T Consensus 217 alkl~~~~~ral~GI~lc~~~la~~sk 243 (289)
T KOG3060|consen 217 ALKLNPKNLRALFGIYLCGSALAQISK 243 (289)
T ss_pred HHHhChHhHHHHHHHHHHHHHHHHHhH
Confidence 999999888888888777665544433
No 73
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.40 E-value=2.2e-12 Score=85.59 Aligned_cols=66 Identities=35% Similarity=0.574 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-DYKAALEAYTKAAELDP 188 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 188 (314)
+..|..+|.++...|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 45555555555555554
No 74
>PRK15331 chaperone protein SicA; Provisional
Probab=99.39 E-value=1.8e-11 Score=92.76 Aligned_cols=112 Identities=14% Similarity=0.016 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
...++.-+..+..|.-++..|++++|...|+-....+|.++..|..||.|+..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (314)
.|.|+..+|+.+.|+.+|..++. .|.+..+..
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHH
Confidence 99999999999999999999998 566555443
No 75
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.39 E-value=7.8e-12 Score=117.66 Aligned_cols=109 Identities=11% Similarity=0.018 Sum_probs=102.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
....|++..++..++.++.+.+++++|+..+++++..+|+++.+++.+|.++.+.|++++|+..|++++..+|+++.++.
T Consensus 113 ~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~ 192 (694)
T PRK15179 113 HQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYV 192 (694)
T ss_pred HhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHH
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
.+|.++...|+.++|...|+++++....-
T Consensus 193 ~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 193 GWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999986553
No 76
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.39 E-value=1.1e-11 Score=86.75 Aligned_cols=99 Identities=44% Similarity=0.626 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
.++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|+.++++++...|.+...+..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q psy4130 171 NDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~ 189 (314)
|++++|...+.+++..+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.38 E-value=1.6e-12 Score=86.28 Aligned_cols=67 Identities=37% Similarity=0.520 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDP 154 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 154 (314)
++..|..+|.+++..|+|++|+.+|+++++++|+++.+|+++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 79999999999999998
No 78
>KOG4648|consensus
Probab=99.38 E-value=3.1e-12 Score=106.49 Aligned_cols=113 Identities=33% Similarity=0.400 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
.-+...|+.|+++|.|++||.||.+++..+|.++..+.|+|.+|++++.|..|..+|..|+.++.....+|.+.+.+-..
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES 177 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 202 (314)
+|...+|.+.++.++++.|++.+....++.+..
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 999999999999999999998887776666533
No 79
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.37 E-value=5.5e-11 Score=93.62 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
...+..++.+|.++...|++++|+..|++++.+.|+. +.+|.++|.++...|++++|+..+++++.++|.....+..
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~ 111 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN 111 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 3457789999999999999999999999999987653 4589999999999999999999999999999999999999
Q ss_pred HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q psy4130 163 MGLAYT-------QMNDYK-------AALEAYTKAAELDPNDP 191 (314)
Q Consensus 163 lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 191 (314)
+|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999988 777766 66666777888888654
No 80
>KOG0495|consensus
Probab=99.37 E-value=1.5e-11 Score=110.19 Aligned_cols=200 Identities=11% Similarity=0.003 Sum_probs=166.1
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh---hhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD---EVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
..|++-.|...+..+++.+| .+..++++.+-...... .+-.. .+.. ......+.|+.-+.....+++
T Consensus 596 ~agdv~~ar~il~~af~~~p---nseeiwlaavKle~en~e~eraR~llakar------~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANP---NSEEIWLAAVKLEFENDELERARDLLAKAR------SISGTERVWMKSANLERYLDN 666 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHHHHHHh------ccCCcchhhHHHhHHHHHhhh
Confidence 46888999999999999999 44445555432222211 11111 1111 122345788888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
.++|+..++++|+..|+...+|..+|.++.++++.+.|...|...++..|..+..|..|+.+-...|..-.|...++++.
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 185 ELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
..+|++...|.....+..+.|+.+.|. ..+..+++..|++.-+|..--.+...
T Consensus 747 lkNPk~~~lwle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 747 LKNPKNALLWLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred hcCCCcchhHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccC
Confidence 999999999999999999999999998 88888899999988888765555333
No 81
>KOG2003|consensus
Probab=99.36 E-value=8.1e-12 Score=107.58 Aligned_cols=183 Identities=22% Similarity=0.156 Sum_probs=147.4
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-HHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES-LFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
.+...|+++.|++.+.-.-+.+..-......++.. .|...++. ..+..+. ..+...+..++.++.+.|++.+..|
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqya---d~aln~dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYA---DIALNIDRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHH---HHHhcccccCHHHhhcCCceeeecC
Confidence 34458899999998866544444221222223333 44444433 2222211 2234556677889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
++++|.+.|+++|.-+.....+++++|..+..+|+.++|+.+|-+.-.+--+++.+++.++.+|..+.+...|++++.++
T Consensus 505 d~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988887889999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..+-|+++.++..|+.+|-+.|+...|.
T Consensus 585 ~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 9999999999999999999999998886
No 82
>KOG0550|consensus
Probab=99.36 E-value=2.7e-12 Score=109.14 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=133.0
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------------VYYCNRAASNNKLKNYKLALRDCQIA 149 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~a 149 (314)
.+.++.+.++++..|.+++...+.+.|+.+|+++|.++|+.. ..|...|.-.++.|+|.+|..+|..+
T Consensus 196 lkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Ytea 275 (486)
T KOG0550|consen 196 LKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEA 275 (486)
T ss_pred HhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHh
Confidence 456777889999999999999999999999999999999864 35778899999999999999999999
Q ss_pred HHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 150 IKIDPHYA----KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 150 l~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
|.++|.+. ..|.+++.+...+|+..+|+..++.++.++|....++...+.|+..++++++|+ +.+..+.+
T Consensus 276 l~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV------~d~~~a~q 349 (486)
T KOG0550|consen 276 LNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV------EDYEKAMQ 349 (486)
T ss_pred hcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHh
Confidence 99999864 679999999999999999999999999999999999999999999999999998 66666665
Q ss_pred hccCChHHHHHHHHh
Q psy4130 226 KVLSDPSIQQVFGEL 240 (314)
Q Consensus 226 ~~~~~p~~~~~l~~~ 240 (314)
.-.. +++.+.+..+
T Consensus 350 ~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 350 LEKD-CEIRRTLREA 363 (486)
T ss_pred hccc-cchHHHHHHH
Confidence 5444 6555555544
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.33 E-value=2.1e-10 Score=100.05 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
+....+++..+..++..+++++|+..++..++..|+|+.++...+.++...++..+|.+.+++++.++|+....+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++.+.|++.+|+..++..+..+|+++..|..|+.+|..+|+..++.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHH
Confidence 9999999999999999999999999999999999999999998885
No 84
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=1.2e-10 Score=96.40 Aligned_cols=183 Identities=13% Similarity=0.130 Sum_probs=143.3
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchh----hHHHHHHHhc-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHH
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNV----DIESLFQLYY-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNT 98 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~----~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 98 (314)
|-.+...|..|+||..-+..++ .|+.+.+... -++.-|...+ .+.++..+. ...+....-..++..+-.+
T Consensus 76 GnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~----~L~de~efa~~AlqqLl~I 150 (389)
T COG2956 76 GNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFN----QLVDEGEFAEGALQQLLNI 150 (389)
T ss_pred HHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHhcchhhhHHHHHHHHHH
Confidence 3345568999999998887654 5755333221 1222222222 222333222 1223344456788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSN-----PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 173 (314)
|....+|++|++.-++..++.+.. +..|+.+|..+....+.+.|+..+.+|++.+|+++.+-..+|.+....|+|
T Consensus 151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch
Confidence 999999999999999999988765 457888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcccccCC
Q psy4130 174 KAALEAYTKAAELDPND-PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.|++.++.+++.||.. +.+...|..||..+|+.++..
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999986 678899999999999999885
No 85
>KOG0495|consensus
Probab=99.31 E-value=5.6e-11 Score=106.55 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=172.8
Q ss_pred chhHHHHHHHHHHHHhc------cccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHH--Hhchhhhhhhhc
Q psy4130 4 KPEDIITSVITFLRKEL------LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQ--LYYKDEVLQWYS 75 (314)
Q Consensus 4 ~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~--~~~~~~~~~~~~ 75 (314)
+|+.++..++.+....- .+..-+....+.++.|+..|..+++..| ....+++...+. ..+..+....
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp---~k~slWlra~~~ek~hgt~Esl~A-- 571 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP---CKKSLWLRAAMFEKSHGTRESLEA-- 571 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHhcCcHHHHHH--
Confidence 56667776664443321 1122234456778999999999999999 766666655332 2233333222
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 76 NINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
+++++....|.....|...+..+...|+...|...+.++++.+|++.++|+.--.+.....+++.|...|.++....|.
T Consensus 572 -llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 572 -LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred -HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 2334445556667788888999999999999999999999999999988888777888888888888888888876654
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ 235 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~ 235 (314)
...|+.-+.+...++..++|+..++++++..|..+..|..+|.++...++.+.|. ..+..-.+..|..+-+|-
T Consensus 651 -eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR------~aY~~G~k~cP~~ipLWl 723 (913)
T KOG0495|consen 651 -ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR------EAYLQGTKKCPNSIPLWL 723 (913)
T ss_pred -chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH------HHHHhccccCCCCchHHH
Confidence 5677778888888888888888888888888888888888888888888888888 888888888888888888
Q ss_pred HHHHhhcCCC
Q psy4130 236 VFGELFANPG 245 (314)
Q Consensus 236 ~l~~~~~~~~ 245 (314)
+++.+....+
T Consensus 724 lLakleEk~~ 733 (913)
T KOG0495|consen 724 LLAKLEEKDG 733 (913)
T ss_pred HHHHHHHHhc
Confidence 8888866543
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.31 E-value=3.6e-11 Score=105.79 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=104.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
+...|..++..|+|++|+..|+++++++|+++.+|+.+|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130 206 NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA 242 (314)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 242 (314)
++++|. ..+..++...+.++.+...+..+..
T Consensus 85 ~~~eA~------~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 85 EYQTAK------AALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred CHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999 9999999999999998877776633
No 87
>KOG3060|consensus
Probab=99.30 E-value=4.7e-10 Score=90.00 Aligned_cols=151 Identities=12% Similarity=0.119 Sum_probs=127.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.-|...+.....|..+...|.|++|+++|+..+.-+|.+..++-..-.+...+|+.-+|++.+...++..+.+.++|..+
T Consensus 81 ~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eL 160 (289)
T KOG3060|consen 81 RFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHEL 160 (289)
T ss_pred hCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34667788888999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh-HHHHHHHHh
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP-SIQQVFGEL 240 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p-~~~~~l~~~ 240 (314)
+.+|...|+|++|..+|++.+-+.|.++.....++.++.-+|-.+.-. ..-.-+.+.+..+| ..+.+++..
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~------~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE------LARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999999999999999999999999999999887654432 22223334444455 445555533
No 88
>KOG0624|consensus
Probab=99.30 E-value=1.1e-10 Score=97.46 Aligned_cols=181 Identities=12% Similarity=0.048 Sum_probs=118.8
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDI--ESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
-.....+.+..|+..|..+++.+| +++.... +.+|...++...... -+.+.+...|+..-+....|.++.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp---~~Y~aifrRaT~yLAmGksk~al~---Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDP---NNYQAIFRRATVYLAMGKSKAALQ---DLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHhhhcCCccchh---hHHHHHhcCccHHHHHHHhchhhhhc
Confidence 344457889999999999999999 5533333 336666664432221 12334556777788888889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCH---HHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNP---VYYC------------NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
|++++|+..|++.|..+|.+. +++. .....+...|++..|+......+++.|=++..+...+.||
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 999999999999988887532 1111 1222233445666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
...|++..|+..++.+-++..++.+..+.++.++...|+.+.+.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 66666666666666666666666666666666666666666655
No 89
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.29 E-value=1.3e-10 Score=111.52 Aligned_cols=127 Identities=7% Similarity=-0.020 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
.|..+...+..+.+.++.|+++.|+..|+++++.+|.++.....+..++...|++++|+.++++++...|........+|
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 34445566667777777777777777777777777776544346666666667777777777777733333444444446
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.++...|++++|++.|+++++.+|+++.++..++.++...++.++|.
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl 156 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL 156 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 67777777777777777777777777777776666667776666665
No 90
>KOG1128|consensus
Probab=99.29 E-value=2e-11 Score=110.56 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
++.+...+|...+..++|+++.++++..++++|-....|+++|.|..+.+++..|..+|.+++.++|++..+|.+++.+|
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay 563 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY 563 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence 44567777888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
...++-.+|...+.++++.+-++..+|.|...+....|++++|.
T Consensus 564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 99999999999999999999999999999999999999999997
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=9.6e-11 Score=103.63 Aligned_cols=159 Identities=11% Similarity=-0.080 Sum_probs=121.6
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhH-HHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDI-ESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
....|++++|++.++++++.+| .+..... +..+...+. ..................+.....+..+|.++...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P---~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYP---RDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 3457899999999999999999 4432111 111111111 1111111111111344566777788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
+++|+..++++++++|+++.++..+|.++...|++++|+..+++++...|.++ ..|..+|.++...|++++|+..|
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987543 35678999999999999999999
Q ss_pred HHHHhhCC
Q psy4130 181 TKAAELDP 188 (314)
Q Consensus 181 ~~al~~~p 188 (314)
++++...|
T Consensus 210 ~~~~~~~~ 217 (355)
T cd05804 210 DTHIAPSA 217 (355)
T ss_pred HHHhcccc
Confidence 99987776
No 92
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.28 E-value=1.3e-11 Score=85.33 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=73.2
Q ss_pred cCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
+|+|+.|+..|+++++.+|. +..+++.+|.||++.|+|++|+..+++ ...+|.+...++.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999999999995 466788899999999999999999999 888999999999999999999999999999
Q ss_pred HHHH
Q psy4130 180 YTKA 183 (314)
Q Consensus 180 ~~~a 183 (314)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9875
No 93
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.3e-10 Score=96.09 Aligned_cols=119 Identities=11% Similarity=0.002 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---DYKAALEAYT 181 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~ 181 (314)
.+.-+.-++.-+..+|++..-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.+++... ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3344444444555555555555555555555555555555555555555555555555555444322 2344455555
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS 229 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 229 (314)
+++.++|.+..+.+.|+..+...|++.+|. .....+...++.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~------~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAA------AAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHH------HHHHHHHhcCCC
Confidence 555555555555555555555555555555 555555555544
No 94
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.26 E-value=3e-11 Score=79.08 Aligned_cols=63 Identities=30% Similarity=0.425 Sum_probs=35.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 128 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345555555555555555555555555555555555555555555555555555555555554
No 95
>KOG4162|consensus
Probab=99.26 E-value=5.2e-10 Score=102.15 Aligned_cols=206 Identities=17% Similarity=0.052 Sum_probs=165.6
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChh-hHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEE-VKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
.....+++..+++|++++|+++ +..++++.-|.....-..+..+. .+.... ...++..|..++.++-..+++.+|
T Consensus 457 ~~~h~kslqale~av~~d~~dp-~~if~lalq~A~~R~l~sAl~~~---~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDP-LVIFYLALQYAEQRQLTSALDYA---REALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHhHHHHHHHH---HHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 3446889999999999999774 33446666565555433332211 122333 445678899999999999999999
Q ss_pred HHHHHHHHHcCCCCH-----------------------------------------------------------------
Q psy4130 109 VIEYSKAIDCDNSNP----------------------------------------------------------------- 123 (314)
Q Consensus 109 ~~~~~~al~~~p~~~----------------------------------------------------------------- 123 (314)
+...+.++.-.|+|.
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 988888876555410
Q ss_pred --------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 124 --------------------------------------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 124 --------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
..|...+..+...++.++|..++.++-.++|..+..|+..|.
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL 692 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence 245577888888899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcc--hHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFP--GLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
++...|.+++|.+.|..++.++|+++.+...+|.++.+.|+..-|. . -+.++++.-+.+|+.|..++.++..
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~------~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE------KRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH------HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877775 4 5678888899999999999999877
Q ss_pred CC
Q psy4130 244 PG 245 (314)
Q Consensus 244 ~~ 245 (314)
.|
T Consensus 767 ~G 768 (799)
T KOG4162|consen 767 LG 768 (799)
T ss_pred cc
Confidence 54
No 96
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.26 E-value=3.8e-10 Score=94.45 Aligned_cols=108 Identities=14% Similarity=0.084 Sum_probs=97.3
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHH
Q psy4130 89 AEKYKNLGNTA-MQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYG 161 (314)
Q Consensus 89 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 161 (314)
...++..|..+ +..|+|++|+..|++.++.+|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46677888776 66799999999999999999998 5799999999999999999999999999998874 68999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (314)
.+|.++..+|++++|+..|+++++..|+...+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 99999999999999999999999999998765443
No 97
>KOG1840|consensus
Probab=99.26 E-value=6.6e-10 Score=100.30 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=129.7
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
+..+|++++|+..++.++++-- .. .....+.-......+|..|...++|.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~---k~---------------------------~G~~hl~va~~l~~~a~~y~~~~k~~ 258 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILE---KT---------------------------SGLKHLVVASMLNILALVYRSLGKYD 258 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHH---Hc---------------------------cCccCHHHHHHHHHHHHHHHHhccHH
Confidence 3457777777777777776511 00 01123344455667999999999999
Q ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHc
Q psy4130 107 QAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--------PHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 107 ~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~ 170 (314)
+|+..|++++.. +|..+.++.+||.+|...|++++|..++++|+.+- |.-...+..++.++...
T Consensus 259 eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~ 338 (508)
T KOG1840|consen 259 EAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM 338 (508)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh
Confidence 999999999975 45556789999999999999999999999999873 33346788899999999
Q ss_pred CCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 171 NDYKAALEAYTKAAELDP--------NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
+++++|+.++++++++-- .-+..+.+||.++..+|++.+|. +.+.++++..
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~------~~~k~ai~~~ 397 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE------ELYKKAIQIL 397 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH------HHHHHHHHHH
Confidence 999999999999988632 23568899999999999999998 7777777665
No 98
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.25 E-value=1.6e-10 Score=85.18 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANN 196 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 196 (314)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4578999999999999999999999999999886 5789999999999999999999999999999885 678999
Q ss_pred HHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130 197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV 236 (314)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~ 236 (314)
++.++...+++++|. ..+..+....|.++.....
T Consensus 82 ~~~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 82 LGMSLQELGDKEKAK------ATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHHHhCChHHHH------HHHHHHHHHCcCChhHHHH
Confidence 999999999999998 8888888888888765443
No 99
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.25 E-value=3.5e-11 Score=78.76 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA 157 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 157 (314)
+.+|..++..|+|++|+..|+++++.+|.++.+|+.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999875
No 100
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.3e-10 Score=94.69 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=103.6
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKIDPHYAK 158 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~ 158 (314)
...+|++++.|..+|.+|+..+++..|...|.+++++.|+++..+..+|.++..+. .-.++...+++++.++|.++.
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 33678899999999999999999999999999999999999999999999987664 467899999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
+.+.||..++..|+|.+|+..++..++..|.+..-
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999999998876543
No 101
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.24 E-value=3.5e-10 Score=101.39 Aligned_cols=124 Identities=11% Similarity=0.081 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
..++++..+..++..+...|+.++|...++++++. |.++......+.+ ..++++++++.+++.++.+|+++..+..+
T Consensus 258 ~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l 334 (398)
T PRK10747 258 KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL 334 (398)
T ss_pred HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 44557778889999999999999999999999994 5566554444443 45999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
|.++...++|++|..+|+++++..|++. .+..++.++.+.|+.++|.
T Consensus 335 grl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 335 GQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAA 381 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999999865 4668999999999999996
No 102
>KOG4162|consensus
Probab=99.23 E-value=1.8e-10 Score=105.05 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
...|...+..+...+.-++|..++.++-..+|..+..|+..|.++...|++++|.+.|..|+.++|+++.....+|.++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34577888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 169 QMNDYKAALE--AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 169 ~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
..|+..-|.. .+..+++++|.++++|+.+|.++..+|+.+.|. .-|.-+.+.-..+|-
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa------ecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA------ECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH------HHHHHHHhhccCCCc
Confidence 9998888877 999999999999999999999999999999998 777777777777763
No 103
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.23 E-value=2.9e-10 Score=102.40 Aligned_cols=124 Identities=9% Similarity=-0.013 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--HHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY--CNRAASNNKLKNYKLALRDCQIAIKIDPHYA--KAYGR 162 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 162 (314)
.++..+..++..+...|++++|+..++++++..|++.... ..........++...+++.++++++.+|+++ .....
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4778899999999999999999999999999999987532 2333444456889999999999999999999 88889
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 163 MGLAYTQMNDYKAALEAYT--KAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+|.+++..|++++|.++|+ .+++.+|+... +..++.++.++|+.++|.
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA 390 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999 58888887665 559999999999999996
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.23 E-value=4e-10 Score=101.03 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=23.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 143 (314)
+..+...|++++|+..+++.++.+|+++.++..++.+|...|+|++|+
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 444444455555555555555555555544444455555555554444
No 105
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.22 E-value=1.6e-10 Score=102.23 Aligned_cols=187 Identities=7% Similarity=-0.124 Sum_probs=128.1
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDI--ESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
....++.+.+...+.++.+..|...+...... +.+....++. ..... ..+.....|.+...+.. +..++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~----~~~~l~~~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALAL----LEQLLDDYPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHCCCcHHHHHH-hHHHHHhc
Confidence 34456778888888888887774433222211 1122222222 22222 23334455666655554 55555544
Q ss_pred CHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 104 KPEQAVIEYSKAI----DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 104 ~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
++..+.....+++ ..+|....++..+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+..
T Consensus 91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 91 DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444 456666777788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH----HHHHHHHHHHHHhcccccCCCCCCCcchHHHHH
Q psy4130 180 YTKAAELDPNDP----LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS 224 (314)
Q Consensus 180 ~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 224 (314)
+++++...|.++ ..+..++.++...|++++|. ..+....
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~------~~~~~~~ 213 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL------AIYDTHI 213 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH------HHHHHHh
Confidence 999999887543 34668999999999999997 5555543
No 106
>KOG1127|consensus
Probab=99.20 E-value=6.7e-11 Score=110.37 Aligned_cols=179 Identities=13% Similarity=0.053 Sum_probs=134.2
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
.|..+....+...|..||.+|+++||+..+... .....|......+.+.. .....+. .........|..+|..|..
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaa-a~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAA-ASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHH-HHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccccccC
Confidence 344445555788999999999999995543322 33334443332221111 1111111 1111223456679999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.+++.+|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.+|..++|.+..+.+..+.....+|+|.+|+..+.
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~ 654 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALG 654 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
..+............++.++.+.
T Consensus 655 ~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 655 LIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 98887766666666666666554
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=8.3e-10 Score=96.35 Aligned_cols=124 Identities=24% Similarity=0.229 Sum_probs=118.3
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 119 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
+|....++|..+..++..|++++|+..+...+...|+|+..+...+.++...++.++|.+.+++++.++|+.+..+.+++
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCCCCC
Q psy4130 199 AAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQA 248 (314)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~ 248 (314)
.++.+.|+..+|+ ..+.......++||..|.+++..+...+...
T Consensus 382 ~all~~g~~~eai------~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 382 QALLKGGKPQEAI------RILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHhcCChHHHH------HHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 9999999999999 9999999999999999999999998876443
No 108
>KOG1174|consensus
Probab=99.20 E-value=1.7e-09 Score=92.49 Aligned_cols=210 Identities=14% Similarity=0.076 Sum_probs=128.7
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhh---HHH-------------HHHHhchhhhhhhh--------------
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVD---IES-------------LFQLYYKDEVLQWY-------------- 74 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~---l~~-------------~~~~~~~~~~~~~~-------------- 74 (314)
-.+...|++++|+-.|+++.-++|...+....+ +++ +|... +.....|.
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHH
Confidence 345568999999999999999999554443321 111 11110 01111110
Q ss_pred -ccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130 75 -SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153 (314)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 153 (314)
.....+.+..++.+..++...|..+...++.++|+-.|+.+..+.|...++|-.+-.+|...|.+.+|.-..+.+++.-
T Consensus 319 AL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 319 ALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred HHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 0011122334555566666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 154 PHYAKAYGRMG-LAYTQ-MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 154 p~~~~~~~~lg-~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
|.++.++..+| .++.. ----++|.+.+++++.++|....+-..++.++..-|++.+++ .-++. .-....|-
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i------~LLe~-~L~~~~D~ 471 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII------KLLEK-HLIIFPDV 471 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH------HHHHH-HHhhcccc
Confidence 66666666665 33332 223467888888888888888888888888888888888885 33333 33334455
Q ss_pred HHHHHHHHhhc
Q psy4130 232 SIQQVFGELFA 242 (314)
Q Consensus 232 ~~~~~l~~~~~ 242 (314)
.+...+++++.
T Consensus 472 ~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 472 NLHNHLGDIMR 482 (564)
T ss_pred HHHHHHHHHHH
Confidence 56666666543
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.20 E-value=1e-09 Score=104.63 Aligned_cols=187 Identities=11% Similarity=0.014 Sum_probs=140.5
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCC---------------CChhhHHHHHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFS---------------PTEEVKIEAEKY 92 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 92 (314)
...+++++|+...+.+++.+|+. -..++..+.++............ ..... .....+.+-.++
T Consensus 42 ~~~~~~deai~i~~~~l~~~P~~-i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al 119 (906)
T PRK14720 42 KSENLTDEAKDICEEHLKEHKKS-ISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDKILLYGENKLAL 119 (906)
T ss_pred HhcCCHHHHHHHHHHHHHhCCcc-eehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHHHHhhhhhhHHH
Confidence 35789999999999999999955 23344555555544432211110 00000 011233444789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------------
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-------------------- 152 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------- 152 (314)
+.+|.||-+.|++++|...|+++++.+|+++.+..++|..|... +.++|++++.+|+..
T Consensus 120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999 999999999998876
Q ss_pred CCCcHHHH--------HHHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCC
Q psy4130 153 DPHYAKAY--------GRMG------------LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASG 212 (314)
Q Consensus 153 ~p~~~~~~--------~~lg------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 212 (314)
+|++.+.+ ..++ .+|...++|++++..++.+++++|+|..+...++.||. +.|..-
T Consensus 199 ~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~-- 274 (906)
T PRK14720 199 NSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDH-- 274 (906)
T ss_pred CcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCc--
Confidence 34443331 1224 77888999999999999999999999999999999998 666664
Q ss_pred CCCCcchHHHHHHh
Q psy4130 213 SGGVFPGLSEMSTK 226 (314)
Q Consensus 213 ~~~~~~~~~~~~~~ 226 (314)
+.+.++.+.
T Consensus 275 -----~~~ee~l~~ 283 (906)
T PRK14720 275 -----SLLEDYLKM 283 (906)
T ss_pred -----chHHHHHHH
Confidence 555555553
No 110
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.16 E-value=2.9e-09 Score=95.90 Aligned_cols=118 Identities=10% Similarity=-0.041 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHH
Q psy4130 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY--GRMGLAYTQMNDYKAALEAYTKAAELDPNDP--LYANN 196 (314)
Q Consensus 121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~ 196 (314)
+++.++..++..+...|++++|++.++++++..|++.... ..........++.+.+++.++++++.+|+++ .+...
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 3667778888888888999999999999999888877532 2233333445778888889999999999988 88888
Q ss_pred HHHHHHHhcccccCCCCCCCcchHHH-HHHhccCChHHHHHHHHhhcCC
Q psy4130 197 MQAAMSNLNNSSSASGSGGVFPGLSE-MSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
+|.++.+.|++++|. ..+.. ..-....+++....++.++...
T Consensus 341 Lg~l~~~~~~~~~A~------~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 341 LGQLLMKHGEFIEAA------DAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHHHHHcccHHHHH------HHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 999999999999886 44442 2222234444455666665554
No 111
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.16 E-value=1.6e-09 Score=99.26 Aligned_cols=145 Identities=9% Similarity=-0.008 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CC
Q psy4130 88 EAEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--------NYKLALRDCQIAIKI--DP 154 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~--~p 154 (314)
.+..++..|..+...++ +..|+.+|+++++++|+++.+|..++.+|.... +...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 45567778888876654 889999999999999999999999999886642 345667777777664 77
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|+.++|. +.+..+.+.-|.+|. +
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~------~~~~~A~~L~P~~pt-~ 489 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAA------DAYSTAFNLRPGENT-L 489 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCCch-H
Confidence 8889999999999999999999999999999999 5789999999999999999999 888888888888886 5
Q ss_pred HHHHHh
Q psy4130 235 QVFGEL 240 (314)
Q Consensus 235 ~~l~~~ 240 (314)
.+..++
T Consensus 490 ~~~~~~ 495 (517)
T PRK10153 490 YWIENL 495 (517)
T ss_pred HHHHhc
Confidence 555554
No 112
>KOG1840|consensus
Probab=99.16 E-value=1.2e-09 Score=98.74 Aligned_cols=189 Identities=19% Similarity=0.126 Sum_probs=140.5
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCC-------chhhHHHHHHHhchhh-hhhhh---ccCCC-CCChhhHHHHH
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPA-------SNVDIESLFQLYYKDE-VLQWY---SNINF-SPTEEVKIEAE 90 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-------~~~~l~~~~~~~~~~~-~~~~~---~~~~~-~~~~~~~~~~~ 90 (314)
.+..+..++++++|+..|++++++--..... ...+++..|...++.+ +.... ..+.. ......+.-+.
T Consensus 247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~ 326 (508)
T KOG1840|consen 247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA 326 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence 4445667889999999999988654322111 2233344554444322 21111 01111 12345667788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------C
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCD--------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--------P 154 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p 154 (314)
.+.+++.++..++++++|+.+|++++++. +.-+..+.++|.+|..+|+|.+|...+++|+++. +
T Consensus 327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDY 406 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcCh
Confidence 89999999999999999999999999862 2335689999999999999999999999999885 3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 155 HYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL-------DPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.....+..+|..+.+.+++.+|.+.|.+++.+ .|+-...+.+|+.+|..+|++++|.
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 34578899999999999999999999988776 2344568999999999999999995
No 113
>KOG1174|consensus
Probab=99.15 E-value=1.2e-09 Score=93.34 Aligned_cols=149 Identities=15% Similarity=0.074 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------------------------HHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------------------------VYYCNR 129 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~l 129 (314)
.-+.+...+..+|.+++..|++.+|+..|+++..++|... .-|+.-
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 4456778888899999999999999999999988888743 234455
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130 130 AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 130 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 209 (314)
+...+..+++..|+.+-+++|..+|++..++...|.++...|+.++|+-.|+.|..+.|..-+.|..|-.+|...|++.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 66677778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 210 ASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 210 A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
|. -...+..+.++++.....+++
T Consensus 387 A~------~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 387 AN------ALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HH------HHHHHHHHHhhcchhhhhhhc
Confidence 97 555667777777766666664
No 114
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.14 E-value=1.3e-09 Score=100.00 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=97.8
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
..++++.|+.+|+++++++|++... +..++..+..... + . . ....+...+
T Consensus 354 ~~~~~~~A~~lle~Ai~ldP~~a~a-~A~la~~~~~~~~-----~-----~---~----------------~~~~~l~~a 403 (517)
T PRK10153 354 DAKSLNKASDLLEEILKSEPDFTYA-QAEKALADIVRHS-----Q-----Q---P----------------LDEKQLAAL 403 (517)
T ss_pred CHHHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHh-----c-----C---C----------------ccHHHHHHH
Confidence 4667889999999999999944111 1111111111000 0 0 0 001234555
Q ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 109 VIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 109 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
....++++.+ +|..+.+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.+
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6666676664 777888899999999999999999999999999999 5889999999999999999999999999999
Q ss_pred CCCCHH
Q psy4130 187 DPNDPL 192 (314)
Q Consensus 187 ~p~~~~ 192 (314)
+|.++.
T Consensus 483 ~P~~pt 488 (517)
T PRK10153 483 RPGENT 488 (517)
T ss_pred CCCCch
Confidence 999875
No 115
>KOG1156|consensus
Probab=99.14 E-value=1.5e-09 Score=97.41 Aligned_cols=125 Identities=21% Similarity=0.148 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
.+.+.+...|..+...|+-++|....+.+++.++.+..+|..+|.++...++|++|+++|+.|+.++|+|...|.-++.+
T Consensus 39 eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred ccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44556778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..++++++.....-.+.+++.|.....|..++..+...|++..|.
T Consensus 119 Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997
No 116
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.13 E-value=5.3e-09 Score=86.92 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY---CNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYG 161 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 161 (314)
.+..++..|..++..|+|++|+..|++++...|..+.+. +.+|.+|.+.+++++|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 456688999999999999999999999999999887554 8999999999999999999999999999875 7889
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCHH---HH--------------HHHHHHHHHhcc
Q psy4130 162 RMGLAYTQMN---------------D---YKAALEAYTKAAELDPNDPL---YA--------------NNMQAAMSNLNN 206 (314)
Q Consensus 162 ~lg~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~---~~--------------~~l~~~~~~~~~ 206 (314)
.+|.++...+ + ..+|+..|++.++..|+..- +. ...+..|.+.|+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9998875554 1 25788999999999998632 22 345666778888
Q ss_pred cccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130 207 SSSASGSGGVFPGLSEMSTKVLSDPSIQQ 235 (314)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~p~~~~ 235 (314)
+..|+ ..+..++...|..|....
T Consensus 191 y~AA~------~r~~~v~~~Yp~t~~~~e 213 (243)
T PRK10866 191 YVAVV------NRVEQMLRDYPDTQATRD 213 (243)
T ss_pred hHHHH------HHHHHHHHHCCCCchHHH
Confidence 88887 788888888887665433
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.13 E-value=2.3e-09 Score=82.16 Aligned_cols=95 Identities=26% Similarity=0.201 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
..+.+.+|.+++..|++++|+..|++++...|+. +.+.+.+|.++...|++++|+..++. +.-.+..+.++..+|.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 4578889999999999999999999999977654 35778899999999999999999966 3444556778889999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy4130 166 AYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al 184 (314)
++...|++++|+..|++++
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999874
No 118
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.12 E-value=6.5e-10 Score=77.59 Aligned_cols=87 Identities=33% Similarity=0.432 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
+++.+|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC
Q psy4130 205 NNSSSAS 211 (314)
Q Consensus 205 ~~~~~A~ 211 (314)
|++++|.
T Consensus 82 ~~~~~a~ 88 (100)
T cd00189 82 GKYEEAL 88 (100)
T ss_pred HhHHHHH
Confidence 9999886
No 119
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.08 E-value=7.3e-09 Score=91.18 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
..++.++...++-.+|+..+.+++...|.+...+...+..+...++++.|+...++++.+.|.+...|+.|+.+|..+|+
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 33455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHH
Q psy4130 173 YKAALEAYT 181 (314)
Q Consensus 173 ~~~A~~~~~ 181 (314)
+++|+..++
T Consensus 284 ~e~ALlaLN 292 (395)
T PF09295_consen 284 FENALLALN 292 (395)
T ss_pred HHHHHHHHh
Confidence 555555544
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=1.5e-08 Score=84.31 Aligned_cols=147 Identities=15% Similarity=0.077 Sum_probs=121.4
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
.|++++|++.|++++...| ..+. ...+.+.+|.++++.+++++|+
T Consensus 45 ~g~y~~Ai~~f~~l~~~yP---~s~~--------------------------------a~~a~l~la~ayy~~~~y~~A~ 89 (243)
T PRK10866 45 DGNWKQAITQLEALDNRYP---FGPY--------------------------------SQQVQLDLIYAYYKNADLPLAQ 89 (243)
T ss_pred CCCHHHHHHHHHHHHHhCC---CChH--------------------------------HHHHHHHHHHHHHhcCCHHHHH
Confidence 5788888888888888888 3322 2346889999999999999999
Q ss_pred HHHHHHHHcCCCCH---HHHHHHHHHHHHcc---------------C---HHHHHHHHHHHHHhCCCcHHH---------
Q psy4130 110 IEYSKAIDCDNSNP---VYYCNRAASNNKLK---------------N---YKLALRDCQIAIKIDPHYAKA--------- 159 (314)
Q Consensus 110 ~~~~~al~~~p~~~---~~~~~la~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~~--------- 159 (314)
..|++.++.+|+++ .+++.+|.++...+ + ..+|+..|++.++..|++..+
T Consensus 90 ~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~ 169 (243)
T PRK10866 90 AAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVF 169 (243)
T ss_pred HHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH
Confidence 99999999998874 57889998875543 1 357889999999999987521
Q ss_pred --------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccccCC
Q psy4130 160 --------YGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 160 --------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~ 211 (314)
-+..|..|.+.|.|..|+.-++.+++..|+. .+++..+...+..+|..++|.
T Consensus 170 l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~ 232 (243)
T PRK10866 170 LKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQAD 232 (243)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHH
Confidence 2356888999999999999999999999875 578899999999999999884
No 121
>PRK11906 transcriptional regulator; Provisional
Probab=99.08 E-value=1.1e-08 Score=89.94 Aligned_cols=109 Identities=12% Similarity=-0.046 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
.+..+|.+.-+++++++|.++.++..+|.++...++++.|...|++|+.++|+.+.+|+..|.+....|+.++|+..+++
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHH-HHHhcccccCC
Q psy4130 183 AAELDPNDPLYANNMQAA-MSNLNNSSSAS 211 (314)
Q Consensus 183 al~~~p~~~~~~~~l~~~-~~~~~~~~~A~ 211 (314)
+++++|....+-...-.+ ..--...++|+
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNPLKNNI 427 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCchhhhH
Confidence 999999765433222222 23334445554
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=7.3e-09 Score=84.00 Aligned_cols=143 Identities=20% Similarity=0.174 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYG 161 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 161 (314)
.+..++..|..++..|+|.+|+..|++.+...|.. +.+.+.+|.++...|++.+|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46789999999999999999999999999998875 46889999999999999999999999999999865 6899
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHHhcccccCCCC
Q psy4130 162 RMGLAYTQMN-----------DYKAALEAYTKAAELDPNDPL-----------------YANNMQAAMSNLNNSSSASGS 213 (314)
Q Consensus 162 ~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~-----------------~~~~l~~~~~~~~~~~~A~~~ 213 (314)
.+|.+++... ...+|+..|+..+...|++.- --..++..|.+.|.+..|+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~-- 161 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAI-- 161 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHH--
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH--
Confidence 9999877653 345899999999999998642 1245577788888888888
Q ss_pred CCCcchHHHHHHhccCChHHHHH
Q psy4130 214 GGVFPGLSEMSTKVLSDPSIQQV 236 (314)
Q Consensus 214 ~~~~~~~~~~~~~~~~~p~~~~~ 236 (314)
..+..+++..|..+.....
T Consensus 162 ----~r~~~v~~~yp~t~~~~~a 180 (203)
T PF13525_consen 162 ----IRFQYVIENYPDTPAAEEA 180 (203)
T ss_dssp ----HHHHHHHHHSTTSHHHHHH
T ss_pred ----HHHHHHHHHCCCCchHHHH
Confidence 8888888888887755433
No 123
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.07 E-value=1.7e-09 Score=85.17 Aligned_cols=110 Identities=20% Similarity=0.182 Sum_probs=92.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSN--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAA 176 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A 176 (314)
...|..+...+...++.++.. ..+|+++|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA 91 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKA 91 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHH
Confidence 445666666676655555554 6678999999999999999999999999997763 46899999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH-------HhcccccCC
Q psy4130 177 LEAYTKAAELDPNDPLYANNMQAAMS-------NLNNSSSAS 211 (314)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~l~~~~~-------~~~~~~~A~ 211 (314)
+..|++++.++|.....+.+++.++. .+|++++|.
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 99999999999999999999999999 555665553
No 124
>KOG1156|consensus
Probab=99.07 E-value=6.4e-09 Score=93.50 Aligned_cols=123 Identities=8% Similarity=0.084 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
...++..+.-.+..++|.+.+...+..|+.+|.+++.....|..+..+|+-++|....+.+++.++.+...|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 34677778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..++|++|+++|+.|+.++|+|..+++.++.+..++++++...
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999998876
No 125
>KOG1127|consensus
Probab=99.07 E-value=9.8e-10 Score=102.81 Aligned_cols=176 Identities=18% Similarity=0.139 Sum_probs=148.7
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh--hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD--EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
..+...|...|-+++.++|++... ...++.+|....+. +..++ .++-+.++.++.++...+..|....+++.
T Consensus 471 rK~~~~al~ali~alrld~~~apa-f~~LG~iYrd~~Dm~RA~kCf-----~KAFeLDatdaeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPA-FAFLGQIYRDSDDMKRAKKCF-----DKAFELDATDAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHHHHHHH-----HHHhcCCchhhhhHHHHHHHhhccccHHH
Confidence 445788999999999999977443 55677777665532 33333 44456778888999999999999999999
Q ss_pred HHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 108 AVIEYSKAIDCDNSN--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 108 A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
|....-.+-+..|.. ...|..+|..|...+++..|+..|+.+++.+|++...|..+|.+|...|++.-|++.|.++..
T Consensus 545 a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 545 AFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 998866666665543 245777999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 186 LDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++|.+.-..+-.+.+....|++.+|.
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999997
No 126
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.06 E-value=3.7e-10 Score=77.93 Aligned_cols=83 Identities=25% Similarity=0.223 Sum_probs=72.2
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
+++++.|+..|+++++.+| .+ + +...++.+|.++++.|+|++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~---~~--------------------------------~-~~~~~~~la~~~~~~~~y~~A~ 45 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP---TN--------------------------------P-NSAYLYNLAQCYFQQGKYEEAI 45 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC---GT--------------------------------H-HHHHHHHHHHHHHHTTHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCC---CC--------------------------------h-hHHHHHHHHHHHHHCCCHHHHH
Confidence 6889999999999999999 22 1 3446888999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA 149 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 149 (314)
..+++ +..+|.+...++.+|.|+.++|++++|+..++++
T Consensus 46 ~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 46 ELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 99999 8888888899999999999999999999999875
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.06 E-value=1.1e-08 Score=78.37 Aligned_cols=122 Identities=16% Similarity=0.084 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGR 162 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 162 (314)
+...+.........+++..+...+++.+..+|.. ..+.+.+|.++...|++++|+..|++++...|+. ..+.++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 4445555666667999999999999999999988 5678889999999999999999999999988665 468899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++.++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~ 138 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEAR 138 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999976 3344456778999999999999999997
No 128
>PRK11906 transcriptional regulator; Provisional
Probab=99.05 E-value=4e-09 Score=92.55 Aligned_cols=133 Identities=13% Similarity=0.006 Sum_probs=116.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q psy4130 91 KYKNLGNTAMQQD---KPEQAVIEYSKAI---DCDNSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 91 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~ 155 (314)
.++..|...+..+ ..+.|+..|.+++ .++|..+.+|..++.|+... .+..+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4577777776555 4678899999999 99999999999999999866 2457899999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS 229 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 229 (314)
++.++..+|.++...++++.|...|++|+.++|+.+.+++..|.+....|+.++|. ..+....+..|.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~------~~i~~alrLsP~ 404 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR------ICIDKSLQLEPR 404 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHH------HHHHHHhccCch
Confidence 99999999999999999999999999999999999999999999999999999997 555555554443
No 129
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.05 E-value=8.8e-10 Score=72.72 Aligned_cols=64 Identities=20% Similarity=0.129 Sum_probs=32.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
..|+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3455555555555555555555555555555555555555555555555555555544444433
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.04 E-value=1.9e-09 Score=72.23 Aligned_cols=64 Identities=27% Similarity=0.381 Sum_probs=32.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130 97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 160 (314)
.+++..++|++|+.++++++.++|+++..|..+|.++..+|++.+|+.+++++++.+|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3444555555555555555555555555555555555555555555555555555555444443
No 131
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.04 E-value=1.8e-09 Score=72.31 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=65.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130 129 RAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199 (314)
Q Consensus 129 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 199 (314)
|..+|...++|++|+.++++++.++|+++..|+.+|.++..+|++.+|+..|+++++..|+++.+....+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 35688999999999999999999999999999999999999999999999999999999999887665543
No 132
>KOG1128|consensus
Probab=99.04 E-value=8.7e-10 Score=100.23 Aligned_cols=147 Identities=18% Similarity=0.127 Sum_probs=123.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
.+.++..|..+|++.....-|++|.+..+.. +..+...+|......++|+++..+++..++++|-....|+.+|
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G 526 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLG 526 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhcc
Confidence 4556777888888877766666666665543 3446666777777789999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.+..+++++..|.++|..++.++|++..+|.+++..|.+.++..+|. ..+.++.+-.-.++.+|..+..+...
T Consensus 527 ~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~------~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAF------RKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHH------HHHHHHhhcCCCCCeeeechhhhhhh
Confidence 99999999999999999999999999999999999999999999998 77777777666677787766655333
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.04 E-value=4.9e-09 Score=84.99 Aligned_cols=151 Identities=21% Similarity=0.159 Sum_probs=118.5
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
......|++++|++.|++++...| .+.. ...+.+.+|.+++..|+
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P---~s~~--------------------------------a~~A~l~la~a~y~~~~ 57 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYP---NSPY--------------------------------APQAQLMLAYAYYKQGD 57 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-T---TSTT--------------------------------HHHHHHHHHHHHHHTT-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCC---CChH--------------------------------HHHHHHHHHHHHHHcCC
Confidence 344568999999999999999999 4432 24578899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCcHHH-----------
Q psy4130 105 PEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLK-----------NYKLALRDCQIAIKIDPHYAKA----------- 159 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~----------- 159 (314)
|++|+..|++.++..|.++ .+++.+|.++..+. ...+|+..|+..+...|++..+
T Consensus 58 y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 58 YEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence 9999999999999999875 57888999877653 3458999999999999987522
Q ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccccC
Q psy4130 160 ------YGRMGLAYTQMNDYKAALEAYTKAAELDPNDP---LYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 160 ------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A 210 (314)
-+.+|..|.+.|.+..|+..++.+++..|+.+ +++..+..++.++|..+.|
T Consensus 138 ~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 138 NRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 34568899999999999999999999999864 5788888889999887643
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.03 E-value=1.2e-08 Score=74.59 Aligned_cols=96 Identities=22% Similarity=0.137 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---YAKAYGRM 163 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 163 (314)
.+++..|.++-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468889999999999999999999999975443 568899999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~ 185 (314)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999888775
No 135
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.03 E-value=1.5e-08 Score=75.39 Aligned_cols=105 Identities=17% Similarity=0.187 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGR 162 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~ 162 (314)
+..++..|...++.|+|.+|++.|+......|.. ..+...++.+|++.+++++|+..+++-++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 5678999999999999999999999999988764 46889999999999999999999999999999876 68999
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHH
Q psy4130 163 MGLAYTQMND---------------YKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 163 lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 193 (314)
.|.+++.+.. ...|...|++.+...|++.-+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999877 888999999999999987644
No 136
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.03 E-value=1.1e-09 Score=72.15 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=62.0
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 133 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
++..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999999999999999998887776653
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.02 E-value=3.9e-09 Score=100.76 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=115.9
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---- 157 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---- 157 (314)
....|.+..++..+...+...+++++|+...+.+++.+|+...+|+.+|.++.+.+++.++... .++..-+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 4567788899999999999999999999999999999999999999999999999988777666 6666655555
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 158 ---------------KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 158 ---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.+++.+|.||.++|++++|...|+++++++|+|+.+..++|..+... +.++|.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 89999999999999999999999999999999999999999999999 999997
No 138
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=3e-09 Score=84.04 Aligned_cols=92 Identities=23% Similarity=0.339 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130 120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196 (314)
Q Consensus 120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (314)
+..+.+++++|.++...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..|++++..+|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4566789999999999999999999999999987764 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCC
Q psy4130 197 MQAAMSNLNNSSSAS 211 (314)
Q Consensus 197 l~~~~~~~~~~~~A~ 211 (314)
++.++...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 999999999876654
No 139
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.01 E-value=1.5e-08 Score=83.00 Aligned_cols=109 Identities=14% Similarity=0.067 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRM 163 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 163 (314)
.-.|..|..++..|+|..|...|...++..|.+ +.+++.||.+++.+|+|++|...|..+++-.|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 338999999999999999999999999999875 5789999999999999999999999999998775 5889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
|.+...+|+.++|...|+++++..|+...+.....
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~ 256 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKV 256 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999999999999999999887655443
No 140
>KOG4555|consensus
Probab=99.01 E-value=3.1e-08 Score=71.58 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRM 163 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l 163 (314)
....+-..|..+...|+.+.|++.|.+++.+.|..+.+|.|++.++.-+|+.++|+.++++++++..... .++...
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 3456777888999999999999999999999999999999999999999999999999999999975543 678999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
|.+|..+|+-+.|...|+.+.++....
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 999999999999999999988876543
No 141
>KOG4642|consensus
Probab=99.01 E-value=1.5e-09 Score=86.32 Aligned_cols=100 Identities=31% Similarity=0.441 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..+.-+...|+.++....|..|+.+|.++|.++|..+.+|.+.+.||++.++|+.+...+.++++++|+.+.+++.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q psy4130 167 YTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~ 186 (314)
......|++|+..+.++..+
T Consensus 88 ~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHhhccccHHHHHHHHHHHH
Confidence 99999999999999999655
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.00 E-value=1.2e-08 Score=85.41 Aligned_cols=107 Identities=13% Similarity=0.023 Sum_probs=95.8
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHH
Q psy4130 123 PVYYCNRAASN-NKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN---DPLYAN 195 (314)
Q Consensus 123 ~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 195 (314)
...++..|..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|++++...|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46788888876 56799999999999999999998 589999999999999999999999999999887 478999
Q ss_pred HHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130 196 NMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ 235 (314)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~ 235 (314)
.++.++..+|++++|. ..+..+.+..|+.+....
T Consensus 222 klg~~~~~~g~~~~A~------~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAKAK------AVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHHHH------HHHHHHHHHCcCCHHHHH
Confidence 9999999999999998 888888888888775443
No 143
>KOG0543|consensus
Probab=98.97 E-value=1.1e-08 Score=87.71 Aligned_cols=142 Identities=15% Similarity=0.146 Sum_probs=111.1
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
|-.+...|++..|+..|++++..-+....... +.. ..........+.+++.++.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-----------ee~------------~~~~~~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-----------EEQ------------KKAEALKLACHLNLAACYLKLK 271 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCH-----------HHH------------HHHHHHHHHHhhHHHHHHHhhh
Confidence 44555688999999999998875552111100 000 0011123457999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA-LEAYTK 182 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~ 182 (314)
+|.+|+...+++|.++|.|..+++..|.++..+++|+.|+.+|+++++++|.|-.+...+..+..+..++.+. .+.|.+
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998887776666554 677777
Q ss_pred HHhhCC
Q psy4130 183 AAELDP 188 (314)
Q Consensus 183 al~~~p 188 (314)
.+..-+
T Consensus 352 mF~k~~ 357 (397)
T KOG0543|consen 352 MFAKLA 357 (397)
T ss_pred Hhhccc
Confidence 776544
No 144
>KOG0376|consensus
Probab=98.94 E-value=1.6e-09 Score=94.52 Aligned_cols=122 Identities=34% Similarity=0.476 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
......++.++..+.|+.|+..|.++|+++|+++.++.+++.++.+.++|..|+.++.+|++++|....+|++.|.+...
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34566788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--cccccCC
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL--NNSSSAS 211 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~A~ 211 (314)
++++.+|...|++...+.|+++.+...+..|.... .+++.|+
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999886644 3456665
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.94 E-value=2.5e-08 Score=87.83 Aligned_cols=113 Identities=18% Similarity=0.077 Sum_probs=104.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKA 175 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 175 (314)
-..+...+.++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 34455578999999999999988865 566789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
|+...++++.+.|++...|+.|+.+|..+|++++|.
T Consensus 253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999999996
No 146
>KOG2376|consensus
Probab=98.94 E-value=6.5e-08 Score=86.34 Aligned_cols=191 Identities=15% Similarity=0.097 Sum_probs=138.0
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-HHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIES-LFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
...+++++|+....+++...|+..++.+..+.. +....+.++- .. ... ...........+..+.|+++.+..+
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~AL-k~----ikk-~~~~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDAL-KL----IKK-NGALLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHH-HH----HHh-cchhhhcchhhHHHHHHHHHcccHH
Confidence 357899999999999999999554444433322 2222222222 11 000 0011111223379999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------------------------------CC-
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID------------------------------PH- 155 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------p~- 155 (314)
+|+.+++ .+++.+..+....|.+++++++|++|+..|+..++.+ |.
T Consensus 97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 97 EALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred HHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 9999998 5566777788999999999999999999999975543 22
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------CC--------HHHHHHHHHHHHHhcccccCCCCCCCcchH
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP-------ND--------PLYANNMQAAMSNLNNSSSASGSGGVFPGL 220 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 220 (314)
+.+.+|+.+.++...|+|.+|++.+++++.+.- .+ ..+...++.++..+|+.++|. .-+
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~------~iy 247 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS------SIY 247 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH------HHH
Confidence 335688999999999999999999999954421 11 236788999999999999997 667
Q ss_pred HHHHHhccCChHH
Q psy4130 221 SEMSTKVLSDPSI 233 (314)
Q Consensus 221 ~~~~~~~~~~p~~ 233 (314)
....+..+.|...
T Consensus 248 ~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 248 VDIIKRNPADEPS 260 (652)
T ss_pred HHHHHhcCCCchH
Confidence 7888888877644
No 147
>KOG0545|consensus
Probab=98.93 E-value=3.4e-08 Score=79.08 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=98.4
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCC----------HHHHHHHHHHHHHccCHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------DNSN----------PVYYCNRAASNNKLKNYKLAL 143 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~~~~~A~ 143 (314)
..........+...|+-+++.|+|.+|...|+.|+.. .|.. ...+.|.+.|+...|+|-+++
T Consensus 171 ddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 171 DDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred chHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 3344456778999999999999999999999999853 3443 357889999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192 (314)
Q Consensus 144 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 192 (314)
+.+...+..+|.+..+|+..|.++...-+..+|...|.++++++|.-..
T Consensus 251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 9999999999999999999999999999999999999999999997543
No 148
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.92 E-value=6.6e-09 Score=91.09 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALRDCQIAIKID 153 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 153 (314)
...+|+++..|+++|.+++..|+|++|+..|+++++++|++..+ |+|+|.||..+|++++|+.++++|+++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44678899999999999999999999999999999999999854 9999999999999999999999999983
No 149
>PRK15331 chaperone protein SicA; Provisional
Probab=98.92 E-value=9.2e-09 Score=78.15 Aligned_cols=112 Identities=11% Similarity=-0.063 Sum_probs=96.7
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130 117 DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196 (314)
Q Consensus 117 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (314)
.+.++.-+..+..|.-++..|++++|...|+-....+|.+++.|+.||.++..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34455567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130 197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ 235 (314)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~ 235 (314)
.|.|+..+|+.+.|. ..+..+.. .+.++.+..
T Consensus 111 agqC~l~l~~~~~A~------~~f~~a~~-~~~~~~l~~ 142 (165)
T PRK15331 111 TGQCQLLMRKAAKAR------QCFELVNE-RTEDESLRA 142 (165)
T ss_pred HHHHHHHhCCHHHHH------HHHHHHHh-CcchHHHHH
Confidence 999999999999997 44444433 344444433
No 150
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=4.1e-08 Score=77.27 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
+...+..++..|..|-..|-+.-|...|.+++.+.|..+.++..+|..+...|+|+.|.+.|...++++|.+..++.+.|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA 242 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 242 (314)
..++--|++.-|.+.+.+--..+|++|---.++-....+. +..+|. ..+.+..+..-.+-.-|.+..-.+.
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-dP~~A~------tnL~qR~~~~d~e~WG~~iV~~yLg 211 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-DPKQAK------TNLKQRAEKSDKEQWGWNIVEFYLG 211 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-CHHHHH------HHHHHHHHhccHhhhhHHHHHHHHh
Confidence 9999999999999999999999999875433333333332 333444 3333333333333334555554433
No 151
>KOG3785|consensus
Probab=98.89 E-value=1.3e-07 Score=79.81 Aligned_cols=147 Identities=12% Similarity=0.044 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------hCC--
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK--------------IDP-- 154 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------~~p-- 154 (314)
.-..+|.|+++.|+|++|+..|+-+...+.-+...+.++|.|++.+|.|.+|.+...++-+ ++.
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHH
Confidence 4556789999999999999999999887777888999999999999999999988776432 111
Q ss_pred ----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHH
Q psy4130 155 ----------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMS 224 (314)
Q Consensus 155 ----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 224 (314)
+..+-...|+.+++..-.|.+|+..|.+++.-+|+.......++.|+.++.-++-+. +.+..+.
T Consensus 139 ~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq------evl~vYL 212 (557)
T KOG3785|consen 139 RILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ------EVLKVYL 212 (557)
T ss_pred HHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH------HHHHHHH
Confidence 112334456777777889999999999999999999999999999999999998887 7777788
Q ss_pred HhccCChHHHHHHHHhhcC
Q psy4130 225 TKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 225 ~~~~~~p~~~~~l~~~~~~ 243 (314)
+..+..+-..++..--..+
T Consensus 213 ~q~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 213 RQFPDSTIAKNLKACNLFR 231 (557)
T ss_pred HhCCCcHHHHHHHHHHHhh
Confidence 8888887665555433333
No 152
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.89 E-value=3e-08 Score=72.51 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN---DPLYANNM 197 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 197 (314)
.+++.+|.++...|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578999999999999999999999999986554 578999999999999999999999999999898 78888999
Q ss_pred HHHHHHhcccccCC
Q psy4130 198 QAAMSNLNNSSSAS 211 (314)
Q Consensus 198 ~~~~~~~~~~~~A~ 211 (314)
+.++...|+.++|+
T Consensus 82 Al~L~~~gr~~eAl 95 (120)
T PF12688_consen 82 ALALYNLGRPKEAL 95 (120)
T ss_pred HHHHHHCCCHHHHH
Confidence 99999999999997
No 153
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.89 E-value=4e-08 Score=75.42 Aligned_cols=96 Identities=26% Similarity=0.307 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN----------YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND-- 172 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-- 172 (314)
|+.|.+.++.....+|.+++.+++-|.++..+.+ +++|+.-|++|+.++|+...+++.+|.++..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 7889999999999999999999999998887743 5778899999999999999999999999988663
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 173 ---------YKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 173 ---------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
|++|..+|++|...+|++..++..|..+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7889999999999999998887777655
No 154
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.87 E-value=2e-07 Score=71.77 Aligned_cols=134 Identities=12% Similarity=0.125 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLA 166 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 166 (314)
.-.+.+|+.+...|++.+|..+|++++. +..+++..+..++.+.+..+++..|...+++..+.+|. .+.....+|.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 4578899999999999999999999987 57788999999999999999999999999999999986 57888999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD 230 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 230 (314)
+...|++.+|...|+.++...|+ +.+...++..+.++|+.++|. ..+..+...+..+
T Consensus 170 laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~------aq~~~v~d~~~r~ 226 (251)
T COG4700 170 LAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREAN------AQYVAVVDTAKRS 226 (251)
T ss_pred HHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHH------HHHHHHHHHHHhc
Confidence 99999999999999999999886 567888899999999999997 6666666655543
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.86 E-value=1.4e-08 Score=89.05 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=66.8
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA---YGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
.+|+++.+|+++|.+|..+|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999865 999999999999999999999999997
No 156
>KOG0551|consensus
Probab=98.86 E-value=2.5e-08 Score=83.12 Aligned_cols=104 Identities=31% Similarity=0.483 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
..+..+..-|+-|++.++|..|+.+|.++|+..-. ++.+|.|+|.|....|+|..|+.++.+++.++|.+..++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 46788999999999999999999999999997543 35679999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
=+.|++.+.++.+|..+++..+.++-+.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 9999999999999999999888776543
No 157
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.85 E-value=3.7e-07 Score=83.52 Aligned_cols=87 Identities=23% Similarity=0.197 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
+++.+|..|...|++++|+.++++||...|..++.|+..|.++...|++.+|..+++.+-.+|+.+.-+....+..+.+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 45677888888888888888888888888888888888888888888888888888888888888877777777888888
Q ss_pred cccccCC
Q psy4130 205 NNSSSAS 211 (314)
Q Consensus 205 ~~~~~A~ 211 (314)
|+.++|.
T Consensus 276 ~~~e~A~ 282 (517)
T PF12569_consen 276 GRIEEAE 282 (517)
T ss_pred CCHHHHH
Confidence 8888885
No 158
>KOG1308|consensus
Probab=98.80 E-value=8e-09 Score=86.47 Aligned_cols=123 Identities=24% Similarity=0.355 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..+.-....+.-.+..|.+++|++.|..++.++|..+.+|..++.++++++++..|+.+|..++.++|+....|-..|.+
T Consensus 112 eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 112 DQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 33444555667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
...+|+|++|...+..+.+++-+ ..+-..+..+.-..+..++-
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~ 234 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDYD-EANSATLKEVFPNAGKIEEH 234 (377)
T ss_pred HHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhc
Confidence 99999999999999999998754 33344444554444444443
No 159
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.80 E-value=7.5e-08 Score=78.98 Aligned_cols=103 Identities=20% Similarity=0.237 Sum_probs=95.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQA 199 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 199 (314)
.|+.|.-+++.|+|..|.+.|..-++..|++. .++|+||.+++.+|++++|...|..+++-.|++ +++++-+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 78999999999999999999999999999864 899999999999999999999999999998875 689999999
Q ss_pred HHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 200 AMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
++.++|+.++|. ..+.++.+..|..+...
T Consensus 224 ~~~~l~~~d~A~------atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 224 SLGRLGNTDEAC------ATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHhcCHHHHH------HHHHHHHHHCCCCHHHH
Confidence 999999999999 88999999999877543
No 160
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=1.6e-07 Score=80.04 Aligned_cols=141 Identities=18% Similarity=0.138 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
.+.+.......++...++++.|.+.++..-+.+.+..-+....|++....| .+.+|...|++.....+.++..+..++
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345666677889999999999999999988888776655555555666655 599999999998888788899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHH-HHHHhccCChHH
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLS-EMSTKVLSDPSI 233 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~p~~ 233 (314)
.++..+|+|++|...+.+++..+|++++++.++..+...+|+..++. ..+. +.....|.+|-+
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~------~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA------ERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH------HHHHHHCHHHTTTSHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH------HHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999999999999999985543 3333 333344555544
No 161
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.75 E-value=3.3e-08 Score=67.03 Aligned_cols=67 Identities=25% Similarity=0.297 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---N----SNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
|..+..+..+|.++...|+|++|+.+|++++.+. + ..+.++.++|.++..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445556666666666666666666666666431 1 11334555666666666666666666665543
No 162
>KOG4648|consensus
Probab=98.74 E-value=2.5e-08 Score=83.64 Aligned_cols=109 Identities=18% Similarity=0.138 Sum_probs=99.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
.-..|.-|+++|.|++|+.||.+++..+|.++..+.+.+.+|+++++|..|...+..++.++-....+|...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 206 NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+..+|. .....++..-+++-++...+..+
T Consensus 180 ~~~EAK------kD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAK------KDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHHHH------HhHHHHHhhCcccHHHHHHHHHh
Confidence 999998 77777777778877776666655
No 163
>KOG4234|consensus
Probab=98.72 E-value=1.9e-07 Score=72.67 Aligned_cols=105 Identities=22% Similarity=0.196 Sum_probs=90.4
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
-|-.....|++++|...|..||..-| ..+. ......|.+.|.++++.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp---~~~~------------------------------e~rsIly~Nraaa~iKl 147 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCP---STST------------------------------EERSILYSNRAAALIKL 147 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCc---cccH------------------------------HHHHHHHhhhHHHHHHh
Confidence 34455668999999999999999998 2211 23355788899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 160 (314)
+.++.|+....++|+++|.+..++..+|.+|.++..|++|+.+|.+.+..+|..-.+.
T Consensus 148 ~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred hhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999866543
No 164
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.72 E-value=2e-08 Score=68.15 Aligned_cols=67 Identities=30% Similarity=0.435 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID----P---HYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
|+-..++.++|.+|..+|+|++|+.+|++++.+. + ..+..+.++|.++...|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3446789999999999999999999999999762 1 23578999999999999999999999999976
No 165
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.64 E-value=1.2e-06 Score=80.27 Aligned_cols=123 Identities=14% Similarity=0.004 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
.++++.++..|-..|++++|+.+++++|...|+.++.|...|.++.+.|++.+|..+++.|-.+|+.+-..-...+..+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HcCCHHHHHHHHHHHHhhC--CCC-------HHHHHHHHHHHHHhcccccCC
Q psy4130 169 QMNDYKAALEAYTKAAELD--PND-------PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~--p~~-------~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.|+.++|.+.+......+ |.. .+.....|.++.+.|++..|.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999998876655 211 234466788899999999886
No 166
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=3.7e-07 Score=77.90 Aligned_cols=142 Identities=13% Similarity=0.037 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
++......|.++...|++++|++.+.+. .+.++......+|.++++++.|.+.++..-+.+.+.+-.....+.+.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3455677778888899999999888764 56788888889999999999999999999999888777766666676
Q ss_pred HHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 168 TQMN--DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 168 ~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
...| .+.+|...|++.....|.++..+..++.|+..+|++++|. ..+.++...-++||+....+..+
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe------~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE------ELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH------HHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHhccCCHHHHHHHHHH
Confidence 6666 5999999999988888889999999999999999999998 77777777777777765444433
No 167
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.62 E-value=3.2e-06 Score=83.99 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGL 165 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 165 (314)
...|..+...|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|+..|.+..+. .|+ ...|..+..
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~ 657 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence 3456666677777777777777777777664 345566777777777777777777777777665 233 456666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcccccCC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDP-NDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.+...|++++|.+.+.++.+... .+...+..+..++.+.|++++|.
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777666432 24556667777777777777775
No 168
>KOG4340|consensus
Probab=98.61 E-value=1.2e-06 Score=72.35 Aligned_cols=136 Identities=21% Similarity=0.184 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH----------------------
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI---------------------- 148 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~---------------------- 148 (314)
.+..+|.||+...+|..|.++|++.-.+.|.........+..+.+.+.+.+|+.....
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 4555666666666666666666666666666555555555555555555555443322
Q ss_pred --------HHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcc
Q psy4130 149 --------AIKIDP--HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFP 218 (314)
Q Consensus 149 --------al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (314)
.+..-| +.+....+.|-+.++.|+++.|++-|+.+++...-++-.-++++.++.+.++++.|. .
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasAL------k 199 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASAL------K 199 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHH------H
Confidence 112223 456778889999999999999999999999999999999999999999999999997 5
Q ss_pred hHHHHHHhcc-CChH
Q psy4130 219 GLSEMSTKVL-SDPS 232 (314)
Q Consensus 219 ~~~~~~~~~~-~~p~ 232 (314)
...+++.+-+ +.|+
T Consensus 200 ~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 200 HISEIIERGIRQHPE 214 (459)
T ss_pred HHHHHHHhhhhcCCc
Confidence 5555554433 3444
No 169
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2.9e-07 Score=72.57 Aligned_cols=113 Identities=24% Similarity=0.262 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 201 (314)
.+..++.+|..|-..|-+.-|.-+|.+++.+.|+-+.++..+|..+...|+|+.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCCCcchHHHHHHhccCCh--HHHHHHHHh
Q psy4130 202 SNLNNSSSASGSGGVFPGLSEMSTKVLSDP--SIQQVFGEL 240 (314)
Q Consensus 202 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p--~~~~~l~~~ 240 (314)
.--|++.-|. ..+....+.-++|| .+|-.+...
T Consensus 144 YY~gR~~LAq------~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 144 YYGGRYKLAQ------DDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred eecCchHhhH------HHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999998 88899999999999 467666654
No 170
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.58 E-value=1.7e-06 Score=64.42 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP---LYAN 195 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~ 195 (314)
.+..++..|...++.|+|.+|++.|+......|.. ..+...|+.+++..+++++|+..+++.++++|.++ -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 45678999999999999999999999999998875 48899999999999999999999999999999875 4788
Q ss_pred HHHHHHHHhcc---------------cccCCCCCCCcchHHHHHHhccCChH
Q psy4130 196 NMQAAMSNLNN---------------SSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 196 ~l~~~~~~~~~---------------~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
..|.++..+.. ...|. ..+...++..|+++.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~------~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAF------RDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHH------HHHHHHHHHCcCChh
Confidence 88888888765 33344 566666666666654
No 171
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.51 E-value=9.3e-06 Score=66.26 Aligned_cols=140 Identities=19% Similarity=0.131 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYG 161 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~ 161 (314)
.+..|+..|...++.|+|++|+..|+.....+|.. ..+...++.++.+.+++++|+...++-+++.|.++ .+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46789999999999999999999999999988765 46789999999999999999999999999999875 5778
Q ss_pred HHHHHHHHcC--------CHHHHHHHHHHHHhhCCCCH---H--------------HHHHHHHHHHHhcccccCCCCCCC
Q psy4130 162 RMGLAYTQMN--------DYKAALEAYTKAAELDPNDP---L--------------YANNMQAAMSNLNNSSSASGSGGV 216 (314)
Q Consensus 162 ~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~---~--------------~~~~l~~~~~~~~~~~~A~~~~~~ 216 (314)
..|.+++..= -..+|+..|+..+...|+.. + --..++..|.+.|.+..|+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~----- 187 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI----- 187 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH-----
Confidence 8888876532 24678889999999999853 1 1234566677777777776
Q ss_pred cchHHHHHHhccCChHH
Q psy4130 217 FPGLSEMSTKVLSDPSI 233 (314)
Q Consensus 217 ~~~~~~~~~~~~~~p~~ 233 (314)
..+..+.+..+.-+.+
T Consensus 188 -nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 188 -NRFEEVLENYPDTSAV 203 (254)
T ss_pred -HHHHHHHhccccccch
Confidence 6666666665554433
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.51 E-value=3.9e-05 Score=59.41 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=120.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCC
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK-IDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~ 172 (314)
.++....+.=+.+.+.....+.+...|+... .+.+|..+...|++.+|...|++++. +..+++..+..++.+.+..++
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 61 TLLMALQQKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 3455566666788888888888888887654 78899999999999999999999997 456788899999999999999
Q ss_pred HHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 173 YKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
+..|...+++..+.+|. .++....++.++...|++.+|. .-.+.+-..-++|+..-.+..++..++
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae-------safe~a~~~ypg~~ar~~Y~e~La~qg 207 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE-------SAFEVAISYYPGPQARIYYAEMLAKQG 207 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH-------HHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 99999999999999985 5778889999999999999994 444555566678888888888877754
No 173
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.50 E-value=1.4e-06 Score=84.13 Aligned_cols=119 Identities=9% Similarity=-0.001 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
.+..+-..+.+.|.+++|...|+...+..+ .+...|..+..+|.+.|++++|.+.+++.- ..| +...|..+...+.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~ 505 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACR 505 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHH
Confidence 345555555566666666666665554221 122345666666677777777776665431 222 3456777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..|+++.|...+++.+++.|++...|..+..+|.+.|++++|.
T Consensus 506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 8888888888888888888887777888888888888888885
No 174
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.49 E-value=1.1e-05 Score=77.89 Aligned_cols=175 Identities=10% Similarity=-0.069 Sum_probs=112.5
Q ss_pred chhhcHHHHHHHHHHHcC--CCCCCCCCc-hhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 28 ESKEGIEVAVECLCKAYD--IPDNIDPAS-NVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~--~~p~~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
...|++++|++.|++..+ ..| +.. +..+...+...+..+ +........... .+.+...+..+...|.+.|
T Consensus 301 ~~~g~~~eA~~lf~~M~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g---~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 301 ALHGYSEEALCLYYEMRDSGVSI---DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG---FPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhccchHHHHHHHHHHHHhC---CCCCeeehHHHHHHHHHCC
Confidence 457889999999988754 344 221 112222333333221 111111111100 1123456777888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
++++|...|++..+ .+...|..+...|.+.|+.++|++.|++..+.... +...+..+-.++...|..++|...|+.
T Consensus 375 ~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 375 RMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 88888888887643 34567888888888888888888888887765421 355566677778888888888888888
Q ss_pred HHhhCCC--CHHHHHHHHHHHHHhcccccCC
Q psy4130 183 AAELDPN--DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 183 al~~~p~--~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..+..+- +...|..+..++.+.|+.++|.
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 7754322 3346777788888888888885
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.49 E-value=3.7e-07 Score=78.04 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC--Cc-
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--SN----PVYYCNRAASNNKL-KNYKLALRDCQIAIKIDP--HY- 156 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p--~~- 156 (314)
.-+..+...+.++.+. ++++|+.+|++++.+.- .. +.++..+|.+|... |++++|+.+|++|+.+.. +.
T Consensus 73 ~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 4456677777777665 99999999999998632 22 45788999999998 999999999999998732 11
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHhcccccCC
Q psy4130 157 ---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND-------PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 157 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~~~~~A~ 211 (314)
...+..+|.++..+|+|++|++.|++.....-++ ...+...+.|+...|+...|.
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~ 216 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAAR 216 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 3667889999999999999999999988754321 134566777888888887775
No 176
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.48 E-value=1.4e-05 Score=65.20 Aligned_cols=149 Identities=14% Similarity=0.077 Sum_probs=121.8
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
....|++++|++.|+.+....| .++. ...+...++.++++.++++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p---~s~~--------------------------------~~qa~l~l~yA~Yk~~~y~ 88 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHP---FSPY--------------------------------SEQAQLDLAYAYYKNGEYD 88 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCC---CCcc--------------------------------cHHHHHHHHHHHHhcccHH
Confidence 3458899999999999998888 4433 1357888999999999999
Q ss_pred HHHHHHHHHHHcCCCCHH---HHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCcHHH----------------
Q psy4130 107 QAVIEYSKAIDCDNSNPV---YYCNRAASNNKLK--------NYKLALRDCQIAIKIDPHYAKA---------------- 159 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~---------------- 159 (314)
+|+...++-+++.|.++. +++..|.+++..= --.+|+..++..+...|++..+
T Consensus 89 ~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~ 168 (254)
T COG4105 89 LALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAG 168 (254)
T ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHH
Confidence 999999999999998764 6777888876542 2457889999999999986411
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcccccC
Q psy4130 160 -YGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 160 -~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A 210 (314)
=..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..++..+|-.++|
T Consensus 169 ~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 169 HEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 2346888999999999999999999987764 46788888999999999999
No 177
>KOG4642|consensus
Probab=98.47 E-value=5e-07 Score=72.21 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=91.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 206 (314)
..-|..++..+.|..|+.+|.++|.++|..+..|.+.+.++++.++|+.+....+++++++|+.....+.+|.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34466777788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcchHHHHHHhccC-----ChHHHHHHHHh
Q psy4130 207 SSSASGSGGVFPGLSEMSTKVLS-----DPSIQQVFGEL 240 (314)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~-----~p~~~~~l~~~ 240 (314)
+++|+ +.+..+....-. -++++..+..+
T Consensus 94 ~~eaI------~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 94 YDEAI------KVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred ccHHH------HHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 99998 666655433322 23556555544
No 178
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.46 E-value=5.3e-07 Score=53.59 Aligned_cols=39 Identities=21% Similarity=0.240 Sum_probs=17.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
+..+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 444444444444444444444444444444444444443
No 179
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.44 E-value=1.7e-05 Score=78.89 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-PHYAKAYGRM 163 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 163 (314)
...|..+...+.+.|++++|.+.|++.... .|+ ...|..+..+|.+.|++++|...|++..+.+ +.+...|..+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 446677777777777777777777776542 333 4556667777777777777777777777765 3456677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAEL--DPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
...|.+.|++++|+..|++..+. .|+ ...+..+...+.+.|+.++|.
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHH
Confidence 77777777777777777777664 343 456677777777777777775
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.43 E-value=1.1e-06 Score=75.06 Aligned_cols=140 Identities=25% Similarity=0.246 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--S----NPVYYCNRAASNNKLKNYKLALRDCQIAIKID--PH- 155 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~- 155 (314)
...-++.+...|+.|...++|++|...|.++....- . -...+...+.+|.+. ++++|+.++++|+.+. .+
T Consensus 31 ~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 31 YEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 334467788999999999999999999999987532 1 134566777777666 9999999999999873 22
Q ss_pred ---cHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 156 ---YAKAYGRMGLAYTQM-NDYKAALEAYTKAAELDPN--D----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 156 ---~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
-+..+..+|.+|... |++++|+++|++|+++... . ...+..++.++..+|++++|+ ..+.+...
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~------~~~e~~~~ 183 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI------EIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHH
Confidence 246889999999998 9999999999999987432 2 357789999999999999998 77777777
Q ss_pred hccCCh
Q psy4130 226 KVLSDP 231 (314)
Q Consensus 226 ~~~~~p 231 (314)
....++
T Consensus 184 ~~l~~~ 189 (282)
T PF14938_consen 184 KCLENN 189 (282)
T ss_dssp TCCCHC
T ss_pred Hhhccc
Confidence 665543
No 181
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.43 E-value=6.7e-07 Score=53.14 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
.+++.+|.+|..+|++++|+..|+++++.+|+++.+|..++.+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 5789999999999999999999999999999999999998753
No 182
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.42 E-value=2.1e-05 Score=67.54 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 153 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
.|+++..++.||..+++.+.|.+|..+|+.+++..|+ ...+..++.++.++|+..+|
T Consensus 324 h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 324 HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence 4455555556666666666666666666666655554 23455556666666665555
No 183
>KOG1130|consensus
Probab=98.40 E-value=2.7e-07 Score=79.33 Aligned_cols=125 Identities=17% Similarity=0.211 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC-
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKID----PH- 155 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~- 155 (314)
...+++-++|+.|+-.|+|++|+..-+.-|.+... ...++.|+|.||.-+|+++.|+++|++++.+. ..
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 34567888888888899999998887776665432 23578889999999999999999888866553 22
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccCC
Q psy4130 156 -YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 156 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.+...|.||..|.-..+++.|+.++.+-+++... ...+.+.|+..+..+|..++|.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 3466788888898888999999988887766432 3457778888888888888874
No 184
>KOG4555|consensus
Probab=98.37 E-value=8.2e-06 Score=59.23 Aligned_cols=85 Identities=22% Similarity=0.144 Sum_probs=77.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHH
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP----LYANNMQAAMS 202 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~ 202 (314)
-..|.++...|+.+.|++.|.+++.+.|..+.+|.+.+.++.-+|+.++|+..+++++++..... .++...+.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 44577888899999999999999999999999999999999999999999999999999976543 46788999999
Q ss_pred HhcccccCC
Q psy4130 203 NLNNSSSAS 211 (314)
Q Consensus 203 ~~~~~~~A~ 211 (314)
.+|+-+.|.
T Consensus 127 l~g~dd~AR 135 (175)
T KOG4555|consen 127 LLGNDDAAR 135 (175)
T ss_pred HhCchHHHH
Confidence 999999997
No 185
>KOG0545|consensus
Probab=98.36 E-value=2.4e-05 Score=63.09 Aligned_cols=124 Identities=17% Similarity=0.104 Sum_probs=96.1
Q ss_pred CCCchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcC--------CCCCCCCCchhhHHHHHHHhchhhhhh
Q psy4130 1 MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYD--------IPDNIDPASNVDIESLFQLYYKDEVLQ 72 (314)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~--------~~p~~~~~~~~~l~~~~~~~~~~~~~~ 72 (314)
|++++|-.+.+.+.-=...+ ...|++.+|+.+|..|+. ..| .++.
T Consensus 169 lsddeKmkav~~l~q~GN~l-------fk~~~ykEA~~~YreAi~~l~~L~lkEkP---~e~e----------------- 221 (329)
T KOG0545|consen 169 LSDDEKMKAVPVLHQEGNRL-------FKLGRYKEASSKYREAIICLRNLQLKEKP---GEPE----------------- 221 (329)
T ss_pred CCchHhhhhhHHHHHhhhhh-------hhhccHHHHHHHHHHHHHHHHHHHhccCC---CChH-----------------
Confidence 45666666666655444443 346677777777766543 334 3322
Q ss_pred hhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 73 WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
| ...+......+.+...|+...++|-+++++....|..+|.+..+|+.+|.++...-+..+|..+|.+++++
T Consensus 222 W--------~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 222 W--------LELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred H--------HHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3 34555667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHH
Q psy4130 153 DPHYAKA 159 (314)
Q Consensus 153 ~p~~~~~ 159 (314)
+|.-..+
T Consensus 294 dpslasv 300 (329)
T KOG0545|consen 294 DPSLASV 300 (329)
T ss_pred ChhhHHH
Confidence 9975543
No 186
>KOG1070|consensus
Probab=98.35 E-value=2.6e-05 Score=76.47 Aligned_cols=200 Identities=12% Similarity=-0.041 Sum_probs=145.5
Q ss_pred hhhcHHHHHHHHHHHcC-CCCCCCCC-chhhHHHHH-HHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 29 SKEGIEVAVECLCKAYD-IPDNIDPA-SNVDIESLF-QLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~-~~p~~~~~-~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
..++++.|.+..++||. +++.-.+. ..+|++.+- ...+. .+.... ...++. ..-+-...|..+..+|...+.
T Consensus 1470 elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k---VFeRAc-qycd~~~V~~~L~~iy~k~ek 1545 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK---VFERAC-QYCDAYTVHLKLLGIYEKSEK 1545 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH---HHHHHH-HhcchHHHHHHHHHHHHHhhc
Confidence 37789999999999985 65633121 333444311 11111 111110 000000 011123467788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
+++|.++|+..++........|...|..+++..+-++|...+.+|++.-|. +.......+.+-++.|+.+.+...|+-
T Consensus 1546 ~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEg 1625 (1710)
T KOG1070|consen 1546 NDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEG 1625 (1710)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHH
Confidence 999999999999998888899999999999999999999999999999998 888889999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 183 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
.+..+|...+.|..+.....+.|+.+..+ .-|+.+...-..--.+...+.
T Consensus 1626 ll~ayPKRtDlW~VYid~eik~~~~~~vR------~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1626 LLSAYPKRTDLWSVYIDMEIKHGDIKYVR------DLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred HHhhCccchhHHHHHHHHHHccCCHHHHH------HHHHHHHhcCCChhHhHHHHH
Confidence 99999999999999999999988887775 445555444443333333333
No 187
>KOG4340|consensus
Probab=98.34 E-value=8.3e-06 Score=67.60 Aligned_cols=136 Identities=10% Similarity=0.013 Sum_probs=104.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
.+.+..+|.+||+++.--.+.+|.+...+..+|.||....+|..|..+|++.-.+.|......+..+..+++.+.+.+|+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 34678899999999999999999998899999999999999999999999999999999999889999999999999888
Q ss_pred HHHHHHHhh------------------------------CC--CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 178 EAYTKAAEL------------------------------DP--NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 178 ~~~~~al~~------------------------------~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
......... -| +..+...+.|.+..+.|++++|. ..+..+.+
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv------qkFqaAlq 172 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV------QKFQAALQ 172 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH------HHHHHHHh
Confidence 766543321 12 23445566666666667776666 66655555
Q ss_pred hccCChHHHHHHHH
Q psy4130 226 KVLSDPSIQQVFGE 239 (314)
Q Consensus 226 ~~~~~p~~~~~l~~ 239 (314)
..--+|-+...+.-
T Consensus 173 vsGyqpllAYniAL 186 (459)
T KOG4340|consen 173 VSGYQPLLAYNLAL 186 (459)
T ss_pred hcCCCchhHHHHHH
Confidence 55555655444443
No 188
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.34 E-value=5.8e-07 Score=49.96 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=15.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy4130 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA 176 (314)
Q Consensus 146 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 176 (314)
|+++|+++|+++.+|+++|.++...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444444444444
No 189
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.34 E-value=4.9e-06 Score=64.08 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN-----------YKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
-+++|+.-|+++|.++|+...+++++|.+|...+. |++|..+|++|+..+|++.....
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~k 118 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRK 118 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 47889999999999999999999999999988753 78999999999999999876443
No 190
>PLN03077 Protein ECB2; Provisional
Probab=98.33 E-value=8.3e-06 Score=80.69 Aligned_cols=173 Identities=11% Similarity=-0.001 Sum_probs=116.7
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
..|++++|.+.|+.. .|+. .. +..+-..|...+. .++.......... ...|+ ...+..+-..+.+.|.+++
T Consensus 536 k~G~~~~A~~~f~~~---~~d~-~s-~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd-~~T~~~ll~a~~~~g~v~e 607 (857)
T PLN03077 536 RCGRMNYAWNQFNSH---EKDV-VS-WNILLTGYVAHGKGSMAVELFNRMVES--GVNPD-EVTFISLLCACSRSGMVTQ 607 (857)
T ss_pred HcCCHHHHHHHHHhc---CCCh-hh-HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC-cccHHHHHHHHhhcChHHH
Confidence 367888888888875 3311 11 1122223433333 2222222111111 11122 2345555567888889999
Q ss_pred HHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 108 AVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 108 A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
|..+|+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ +..|..|-.++...++.+.+....++.++
T Consensus 608 a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 9999988774332 23467888888899999999999888875 24554 56677777777888899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 186 LDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++|++...+..++.+|...|++++|.
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999885
No 191
>PLN03077 Protein ECB2; Provisional
Probab=98.33 E-value=3.9e-05 Score=75.98 Aligned_cols=115 Identities=9% Similarity=-0.004 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 169 (314)
+..+-..|.+.|++++|...|+.. +.+...|..+...|.+.|+.++|+..|++..+. .|+.. .+..+-.++..
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~ 601 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSR 601 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhh
Confidence 344555666666677766666654 345556666666666667777777777666653 23332 33333345666
Q ss_pred cCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCC
Q psy4130 170 MNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.|.+++|..+|+...+..+- +...+..+..++.+.|+.++|.
T Consensus 602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 66667776666666533221 2345666666666666666664
No 192
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.30 E-value=7.3e-07 Score=49.56 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHH
Q psy4130 111 EYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR 144 (314)
Q Consensus 111 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 144 (314)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 193
>KOG2053|consensus
Probab=98.28 E-value=2.5e-05 Score=73.45 Aligned_cols=141 Identities=10% Similarity=0.039 Sum_probs=123.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 178 (314)
....++|.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678999999999999999999999999999999999999999988888888888888999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh-HHHHHHHHhhcCCCC
Q psy4130 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP-SIQQVFGELFANPGQ 246 (314)
Q Consensus 179 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p-~~~~~l~~~~~~~~~ 246 (314)
.|++++..+|+ ......+-.++.+.+.+.+=. ..-.+..+..|++| -+|..++.++....+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ------kaa~~LyK~~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQ------KAALQLYKNFPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhCCcccchHHHHHHHHHHhccC
Confidence 99999999999 788888888888888886654 45567888888888 469999888766543
No 194
>KOG1915|consensus
Probab=98.27 E-value=0.00012 Score=64.49 Aligned_cols=206 Identities=11% Similarity=-0.000 Sum_probs=140.0
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHH--------HHHhchhhh---hhhhccCCCCCChhhHHHHHHHHHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESL--------FQLYYKDEV---LQWYSNINFSPTEEVKIEAEKYKNLGN 97 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~--------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (314)
..|+.+.-.+.|++|+..-|...+. ..+-..+ |.....+.. ...++..+.-.....-..+..|...|.
T Consensus 334 ~~g~~~~Ire~yErAIanvpp~~ek-r~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~ 412 (677)
T KOG1915|consen 334 SVGDKDRIRETYERAIANVPPASEK-RYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQ 412 (677)
T ss_pred hcCCHHHHHHHHHHHHccCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3577888889999999888743222 1122222 221111110 011111111112334456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
...++.+...|.+.+-.|+..+|.+- +....-.+-.++++++.+...|++-+.-+|.+..+|...|.+-..+|+.+.|.
T Consensus 413 feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaR 491 (677)
T KOG1915|consen 413 FEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRAR 491 (677)
T ss_pred HHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHH
Confidence 88899999999999999999998764 33444455667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCH--HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 178 EAYTKAAELDPNDP--LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 178 ~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
..|+-|+....-+. ..|..+.......|+++.|. ..+...+.....- .+|..++.....
T Consensus 492 aifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR------~LYerlL~rt~h~-kvWisFA~fe~s 552 (677)
T KOG1915|consen 492 AIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR------ALYERLLDRTQHV-KVWISFAKFEAS 552 (677)
T ss_pred HHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH------HHHHHHHHhcccc-hHHHhHHHHhcc
Confidence 99998887654332 35666777777888888885 4444444444333 478888777443
No 195
>KOG2796|consensus
Probab=98.27 E-value=2.4e-05 Score=63.77 Aligned_cols=139 Identities=15% Similarity=0.112 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCcH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID------PHYA 157 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~ 157 (314)
.+......+.+..++...++|.-....+.+.++.+ |..+.....+|.+-.+.|+.+.|..+++++-+.. ....
T Consensus 173 ~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~ 252 (366)
T KOG2796|consen 173 RKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKI 252 (366)
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhH
Confidence 44556677888999999999999999999999998 6778888999999999999999999999655432 2244
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS 229 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 229 (314)
....+.+.++.-.+++.+|...|.+++..||.++.+..+.+.|+.-+|+..+|+ ..+..+....|.
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi------K~~e~~~~~~P~ 318 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL------KQLEAMVQQDPR 318 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH------HHHHHHhccCCc
Confidence 667788888999999999999999999999999999999999999999999998 777777766665
No 196
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.26 E-value=1.8e-05 Score=67.47 Aligned_cols=143 Identities=13% Similarity=0.012 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK-LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
+|..+.+...+.+..+.|...|.+|++..+....+|...|.+-.. .++.+.|...|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566677777777889999999999986666678888888888666 5666779999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHH
Q psy4130 170 MNDYKAALEAYTKAAELDPNDP---LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE 239 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 239 (314)
.++.+.|...|++++..-|... .+|..........|+.+... .....+.+..+.++.+......
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~------~v~~R~~~~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVR------KVEKRAEELFPEDNSLELFSDR 149 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHH------HHHHHHHHHTTTS-HHHHHHCC
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999999877654 68888888888999887775 4445566666666766655553
No 197
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.24 E-value=2.8e-06 Score=47.32 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
+|+++|.+|..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4444555555555555555555555554443
No 198
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.22 E-value=0.00025 Score=57.38 Aligned_cols=203 Identities=21% Similarity=0.131 Sum_probs=143.0
Q ss_pred hhcHHHHHHHHHHHcCCCCCC-CCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNI-DPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~-~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
.+.+..++..+...+...+.. ...........+....... ........... ...+.....+...+......+++..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEE 113 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhhHHH
Confidence 467778888888888887732 0011112222222222111 11110000000 2345667788899999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAA-SNNKLKNYKLALRDCQIAIKIDP---HYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
++..+.+++...+.........+. ++...++++.|...+.+++..+| .....+..++..+...++++.|+..+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 114 ALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999999999988877665666666 89999999999999999999877 45677777777888999999999999999
Q ss_pred HhhCCC-CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 184 AELDPN-DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 184 l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+...+. ....+..++.++...++++.|. ..+.......+.....+..+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEAL------EYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHH------HHHHHHHhhCcccHHHHhhHHHH
Confidence 999999 6899999999999999888886 55555555555433334444433
No 199
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.19 E-value=0.00016 Score=58.60 Aligned_cols=114 Identities=29% Similarity=0.351 Sum_probs=99.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDN---SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDY 173 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~ 173 (314)
++...++++.|+..|.+++..+| .....+..++..+...+++..|+..+.+++...+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 88999999999999999988777 45666777777788899999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.|+..+.+++...|.....+..++..+...+..+++.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 99999999999999987777777777777666566664
No 200
>KOG1130|consensus
Probab=98.17 E-value=1.7e-05 Score=68.48 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------Cc
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP------HY 156 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~ 156 (314)
-+++.++|+++.-.|+|+.|+++|+..+.+. ...+...|.+|..|.-.+++++|+.+..+-+.+.. ..
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4689999999999999999999999887652 12355678999999999999999999999777642 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHhccccc
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELD-----PN-DPLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~l~~~~~~~~~~~~ 209 (314)
..+++.||.++..+|..++|+.+.++.+++. |. ...+..++......+|..+.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 5889999999999999999999888877652 22 34577888888888887765
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.16 E-value=0.00015 Score=55.44 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN----------------------PVYYCNRAASNNKLKNYKLALRDCQ 147 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~ 147 (314)
..+...|......++.+.++..+++++.+.... ..+...++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344555666777889999999999999875321 1234456666777788888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 148 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
+++..+|.+..+|..+-.++...|+..+|+..|++...
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888877776543
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.16 E-value=4.6e-06 Score=46.41 Aligned_cols=34 Identities=53% Similarity=0.861 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 203
>KOG2796|consensus
Probab=98.14 E-value=5e-05 Score=61.95 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID----CD--NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA 159 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 159 (314)
+..+.....+|.+.++.|+.+.|..+|+..-+ ++ .....+..+.+.+|.-.++|..|...+.+++..||.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence 44566778899999999999999999995443 22 2234567788899999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q psy4130 160 YGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNMQAAM 201 (314)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~ 201 (314)
..+.+.|+..+|+..+|++..+.++...|.. ....++|..++
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999974 33455555544
No 204
>KOG2376|consensus
Probab=98.14 E-value=4.2e-05 Score=68.86 Aligned_cols=117 Identities=15% Similarity=0.029 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
.++.--+.+...++|++|+....+.+...|++..+....-.|+.+.++|++|+...++-......+. ..+..+-|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHc
Confidence 3444445566778888888888888888888888877777788888888888744433332222222 226777788888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+..++|+.+++ -+++.+..+....+.++.++++|++|.
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydeal 130 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEAL 130 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHH
Confidence 88888888777 445666667777788888888888886
No 205
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.13 E-value=7.8e-06 Score=45.38 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=10.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
|+.+|.++..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33333333333333333333333333333
No 206
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.13 E-value=8.3e-06 Score=45.28 Aligned_cols=34 Identities=47% Similarity=0.778 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
+.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 207
>KOG0376|consensus
Probab=98.12 E-value=2.1e-06 Score=75.51 Aligned_cols=107 Identities=25% Similarity=0.249 Sum_probs=99.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 206 (314)
-+-+.-.+.-++|+.|+..|.+||+++|+.+..+-+.+.++.+.+++..|+..+.++++++|....+|+..|.+...+++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 44566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcchHHHHHHhccCChHHHHHHHH
Q psy4130 207 SSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE 239 (314)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~ 239 (314)
+.+|. ..+.......|++|.+...+..
T Consensus 88 ~~~A~------~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 88 FKKAL------LDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHH------HHHHHhhhcCcCcHHHHHHHHH
Confidence 99999 8999999999999988777663
No 208
>KOG1070|consensus
Probab=98.10 E-value=0.00058 Score=67.44 Aligned_cols=199 Identities=10% Similarity=-0.033 Sum_probs=148.1
Q ss_pred HHHHHHHHcCCCCCCCCCchhhHHHH--HHHhchhhhhhh--hccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy4130 36 AVECLCKAYDIPDNIDPASNVDIESL--FQLYYKDEVLQW--YSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIE 111 (314)
Q Consensus 36 Ai~~~~~al~~~p~~~~~~~~~l~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 111 (314)
..+-|++.+.-+| .+...|+..+ +....+.+.+.. ...+-.....+..+....|..+-+....-|.-+.-.+.
T Consensus 1443 saeDferlvrssP---NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kV 1519 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP---NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKV 1519 (1710)
T ss_pred CHHHHHHHHhcCC---CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHH
Confidence 4566788888889 6655566552 222222221111 00011100112223334455544555555677777888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--
Q psy4130 112 YSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN-- 189 (314)
Q Consensus 112 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 189 (314)
|++|.+.+. -...|..|..+|.+.+.+++|.+.++..++........|..++..++...+-+.|...+.+|++.-|.
T Consensus 1520 FeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1520 FERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 999988763 34578899999999999999999999999998888999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
+.......+.+..+.|+.+.+. ..+.......|..-++|..+-...-..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGR------tlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGR------TLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhH------HHHHHHHhhCccchhHHHHHHHHHHcc
Confidence 7788899999999999999998 788888889999999999888775553
No 209
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.09 E-value=0.00037 Score=59.46 Aligned_cols=127 Identities=19% Similarity=0.159 Sum_probs=102.2
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh-cCCHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ-QDKPEQA 108 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A 108 (314)
.+.++.|...|.+|.+..+ ... ..|...|..-+. .++.+.|
T Consensus 14 ~~g~~~aR~vF~~a~~~~~---~~~-----------------------------------~vy~~~A~~E~~~~~d~~~A 55 (280)
T PF05843_consen 14 TEGIEAARKVFKRARKDKR---CTY-----------------------------------HVYVAYALMEYYCNKDPKRA 55 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCC---S-T-----------------------------------HHHHHHHHHHHHTCS-HHHH
T ss_pred hCChHHHHHHHHHHHcCCC---CCH-----------------------------------HHHHHHHHHHHHhCCCHHHH
Confidence 5569999999999985444 222 356667777555 6777779
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
...|+.+++..|.+..+|......+...++.+.|...|++++..-|... ..|......-...|+.+...+..+++.+
T Consensus 56 ~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 56 RKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877655 6788888888899999999999999999
Q ss_pred hCCCCHHHH
Q psy4130 186 LDPNDPLYA 194 (314)
Q Consensus 186 ~~p~~~~~~ 194 (314)
..|++....
T Consensus 136 ~~~~~~~~~ 144 (280)
T PF05843_consen 136 LFPEDNSLE 144 (280)
T ss_dssp HTTTS-HHH
T ss_pred HhhhhhHHH
Confidence 999865433
No 210
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.08 E-value=0.00016 Score=72.15 Aligned_cols=122 Identities=8% Similarity=-0.072 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-------- 155 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------- 155 (314)
..+..+|.++...|++++|...+++++...... ..++.++|.++...|++++|...+++++.+...
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 345667777778888888888888877653221 234566777788888888888888887775211
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhcccccCC
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
....+..+|.++...|++++|...+.+++.+... ...++..++.++...|++++|.
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 632 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNAR 632 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 1234556777777788888888888877765321 2344556777777777777775
No 211
>KOG1308|consensus
Probab=98.06 E-value=2.1e-06 Score=72.31 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=92.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCC
Q psy4130 133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASG 212 (314)
Q Consensus 133 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 212 (314)
.+..|.++.|++.|..+|.++|.....|...+.++.+++++..|+..|..+++++|+...-+...+.+...+|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a-- 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA-- 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH--
Confidence 345788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 213 SGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
......+..+--|+..-..+.....+.+
T Consensus 202 -----a~dl~~a~kld~dE~~~a~lKeV~p~a~ 229 (377)
T KOG1308|consen 202 -----AHDLALACKLDYDEANSATLKEVFPNAG 229 (377)
T ss_pred -----HHHHHHHHhccccHHHHHHHHHhccchh
Confidence 4555666666677877777777655543
No 212
>KOG3081|consensus
Probab=98.04 E-value=0.00035 Score=57.22 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL-EAYTK 182 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~ 182 (314)
.+.+|.-+|++.-...|..+......+.|+..+++|++|...++.++..++++++.+.++-.+-..+|...++. ..+.+
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 45555555555555444555555555555555555555555555555555555555555555555555544432 23333
Q ss_pred HHhhCCCC
Q psy4130 183 AAELDPND 190 (314)
Q Consensus 183 al~~~p~~ 190 (314)
....+|+.
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 44444444
No 213
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.93 E-value=0.0012 Score=57.02 Aligned_cols=125 Identities=17% Similarity=0.041 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-AKAYGRMGL 165 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~ 165 (314)
..+.....-|..-+..|+|.+|.....+.-+..+....++..-+.+-..+|+++.|-.++.++-+..+++ ......++.
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrar 161 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 3455666778888889999999999999888777777777777888899999999999999999995554 467788899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++...|+++.|.....++++..|.++.+......+|...|++.+..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999998875
No 214
>KOG3785|consensus
Probab=97.91 E-value=0.0037 Score=53.52 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=60.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
...+|.++...-.|.+|++.|.+++.-+|.....-..++.||+++.=++-+.+.+.--+...|+.+-+....+..+.++=
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence 44566666666677778888888877777777777777777887777777777777777777777776666666666654
Q ss_pred ccccC
Q psy4130 206 NSSSA 210 (314)
Q Consensus 206 ~~~~A 210 (314)
+-..|
T Consensus 234 ngr~a 238 (557)
T KOG3785|consen 234 NGRTA 238 (557)
T ss_pred ccchh
Confidence 44444
No 215
>KOG2471|consensus
Probab=97.91 E-value=2.6e-05 Score=68.71 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-h----
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKA-IDCDNS--------NPVYYCNRAASNNKLKNYKLALRDCQIAIK-I---- 152 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~---- 152 (314)
+.+.++...++.++-.|+|.+|.+.+... +...|. ...+|.|+|.++++++.|.-+..+|.+|++ .
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 55778888999999999999999887532 223333 234678999999999999999999999996 1
Q ss_pred ----CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 153 ----DP---------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 153 ----~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
.| +.....|+.|..+...|++-.|.++|.+++.....+|..|..++.|.+..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 24578999999999999999999999999999999999999999997754
No 216
>KOG1941|consensus
Probab=97.86 E-value=9.3e-05 Score=63.09 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----c---
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----Y--- 156 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~--- 156 (314)
.....+|+++...+.|+++++.|+.+++..-.+ ..++..+|..+...+|+++|+.+..+|..+... +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 456679999999999999999999999874332 246889999999999999999999999987432 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHhcccccCC
Q psy4130 157 ---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDP------NDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 157 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.-+++.++.++..+|+.-+|.++++++.++.- -......-++.+|...|+.+.|.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af 266 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAF 266 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHH
Confidence 25678899999999999999999999887632 23456677889999999988876
No 217
>KOG1586|consensus
Probab=97.86 E-value=0.00071 Score=54.43 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----
Q psy4130 89 AEKYKNLGNTAMQQ-DKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---- 157 (314)
Q Consensus 89 ~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---- 157 (314)
+..+..+|.+|... .++++|+.+|+++-+..... ..++...+..-..+++|.+|+..|++.....-++.
T Consensus 113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 34577888888775 89999999999998865432 12445556666778999999999999998876654
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130 158 ---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192 (314)
Q Consensus 158 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 192 (314)
..++.-|.|++...+.-.+...+++...++|....
T Consensus 193 s~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 193 SAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 34556678888889999999999999999998654
No 218
>KOG3081|consensus
Probab=97.83 E-value=0.0016 Score=53.47 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=66.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL----KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
.++.+..+++-|...+++....+.+ .....||.++.+. +.+.+|.-+|+..-...|..+......+.|+..+++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 3444444444444444444443322 2233344444432 345666666666666555566666666777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 173 YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
|++|...++.++..++++++.+.|+..+-..+|.-.++.
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 777777777777777777777777777766776665554
No 219
>KOG1915|consensus
Probab=97.81 E-value=0.0013 Score=58.29 Aligned_cols=127 Identities=13% Similarity=0.106 Sum_probs=113.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.+.-+...|...|.--..++++..|...|++||..+-.+..+|...+.+-++.+....|...+.+|+.+-|.-...|+..
T Consensus 68 rnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY 147 (677)
T KOG1915|consen 68 RNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence 34445667888898889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
...-..+|+...|.+.|++-+...|+ ..+|........+.++.+.|.
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR 194 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERAR 194 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHH
Confidence 88888999999999999999999996 457777778888888888885
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0017 Score=54.24 Aligned_cols=143 Identities=13% Similarity=0.024 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG--LAY 167 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg--~~~ 167 (314)
+.-+..+......+++.+|...|..++...|.+..+...++.||...|+.+.|...+...-....+.. .....+ ..+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ll 213 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIELL 213 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHHH
Confidence 34555667788999999999999999999999999999999999999999999888766433222211 111111 222
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc--cCChHHHHHHHHh
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV--LSDPSIQQVFGEL 240 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~p~~~~~l~~~ 240 (314)
.......+. ..+.+.+..+|++..+.+.++..+...|+.++|. ..+....++- .+|...+..+-.+
T Consensus 214 ~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al------e~Ll~~l~~d~~~~d~~~Rk~lle~ 281 (304)
T COG3118 214 EQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAAL------EHLLALLRRDRGFEDGEARKTLLEL 281 (304)
T ss_pred HHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhcccccCcHHHHHHHHH
Confidence 222222221 2355667789999999999999999999999997 6555555543 2355444333333
No 221
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.81 E-value=0.00095 Score=66.69 Aligned_cols=124 Identities=15% Similarity=-0.041 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------ 156 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 156 (314)
.......+|.++...|++++|...+++++...+... .++..+|.++...|++++|...+++++......
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 345556688899999999999999999998654422 356778999999999999999999999764321
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhcccccCC
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--------DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..++..+|.++...|++++|...+++++.+... ....+..++.++...|++++|.
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 593 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE 593 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 246678899999999999999999999886321 1234567788899999999885
No 222
>KOG2610|consensus
Probab=97.70 E-value=0.00048 Score=58.28 Aligned_cols=117 Identities=11% Similarity=0.033 Sum_probs=80.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHc
Q psy4130 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-DPHY---AKAYGRMGLAYTQM 170 (314)
Q Consensus 95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~lg~~~~~~ 170 (314)
.+.+.+.+|++.+|...+++.|...|.+.-++..--.+++.+|+...-...+++.+-. +|+- ....-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3445566777777777788888877777766666666677777777777777777765 4443 34444556666677
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
|-|++|.+.-+++++++|.+..+...++-++...+++.++.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence 77777777777777777777766677777776666666654
No 223
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.69 E-value=8.4e-05 Score=41.13 Aligned_cols=29 Identities=28% Similarity=0.476 Sum_probs=12.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34444444444444444444444444443
No 224
>KOG1310|consensus
Probab=97.67 E-value=0.00022 Score=63.68 Aligned_cols=108 Identities=31% Similarity=0.370 Sum_probs=96.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL---KNYKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~ 160 (314)
.-+...+.+...|+-.+....+..|+..|.+++...|....++.+++.++++. |+.-.|+.++..|++++|...++|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 34566777788888888888999999999999999999999999999999886 578889999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (314)
++|+.++..++++.+|+.+...+....|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999999887777788554
No 225
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.66 E-value=0.0001 Score=40.75 Aligned_cols=33 Identities=45% Similarity=0.813 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 579999999999999999999999999999953
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.63 E-value=0.00076 Score=61.77 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
+.+.|.+.++......|+.+-..+..|.++...|+.++|+..+++++..... ..-.++.+|.++..+.+|++|..+
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 3344444444444444444444444444444444444444444444422111 112344444444444444444444
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHhccc
Q psy4130 180 YTKAAELDPND-PLYANNMQAAMSNLNNS 207 (314)
Q Consensus 180 ~~~al~~~p~~-~~~~~~l~~~~~~~~~~ 207 (314)
|.+..+.+.-. .-+.+..|.|+..+++.
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 44444433221 22233344444444444
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.62 E-value=0.0026 Score=56.84 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------------
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH------------------ 155 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------ 155 (314)
.+-....+..+.+.-++.-++||+++|+.+.+|..+|.= ......+|...++++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 344556778999999999999999999999999887652 223456666667666654210
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCC
Q psy4130 156 -------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 156 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
...+..++|.|..++|+.++|++.++..++..|. +..++.+|..++..++.+.++.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q 315 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ 315 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence 1245678999999999999999999999998875 5678999999999999999984
No 228
>KOG0551|consensus
Probab=97.61 E-value=0.00048 Score=58.16 Aligned_cols=89 Identities=20% Similarity=0.171 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
+.-|-.-|.-|++.++|..|+..|.+.|+..-. ++..|.+++-+.+.+|+|..|+..+.+++.++|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445667799999999999999999999998543 4578999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCC
Q psy4130 199 AAMSNLNNSSSAS 211 (314)
Q Consensus 199 ~~~~~~~~~~~A~ 211 (314)
.|+..+.++.+|.
T Consensus 161 kc~~eLe~~~~a~ 173 (390)
T KOG0551|consen 161 KCLLELERFAEAV 173 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988886
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.59 E-value=0.0032 Score=49.42 Aligned_cols=101 Identities=17% Similarity=0.082 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
-....++..+...+++++|+..++.++....+. +-+-..+|.+...+|.+++|+..+......+- .+..-...|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence 456778899999999999999999998653332 23557899999999999999998876554221 22345678999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~ 191 (314)
+...|+-++|+..|.+++..+++..
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCChH
Confidence 9999999999999999999985543
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.58 E-value=0.002 Score=49.09 Aligned_cols=108 Identities=15% Similarity=0.072 Sum_probs=74.4
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
..++.+.+++.+++++.+.. .+.-..+. ...|.. ............++..++..+...|++++|
T Consensus 18 ~~~~~~~~~~~~~~al~ly~---G~~l~~~~----------~~~W~~---~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 18 RAGDPEEAIELLEEALALYR---GDFLPDLD----------DEEWVE---PERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HTT-HHHHHHHHHHHHTT-----SSTTGGGT----------TSTTHH---HHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HCCCHHHHHHHHHHHHHHhC---CCCCCCCC----------ccHHHH---HHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 35688899999999998876 33110000 001100 000112233456778888899999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
+..+++++..+|.+..+|..+-.+|...|++.+|+..|+++...
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987653
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.57 E-value=0.0036 Score=55.97 Aligned_cols=109 Identities=19% Similarity=0.121 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKLKNYKLALRDCQIAIKI-DPHYAKAYGRMGL 165 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 165 (314)
..+-..+|.+..+.|+.++|++.++..++.+|. +..++.++..++..++.|.++...+.+.-.+ -|+++...+..+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 445677999999999999999999999998875 4668999999999999999999999986544 2666766666655
Q ss_pred HHHH-cCC---------------HHHHHHHHHHHHhhCCCCHHHHHHH
Q psy4130 166 AYTQ-MND---------------YKAALEAYTKAAELDPNDPLYANNM 197 (314)
Q Consensus 166 ~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~l 197 (314)
+..+ .++ -..|++.+.+|++.||.-+..+..+
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 4432 222 2347789999999999887765544
No 232
>KOG1586|consensus
Probab=97.56 E-value=0.0043 Score=50.04 Aligned_cols=141 Identities=19% Similarity=0.159 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-----NS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-- 157 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-- 157 (314)
.+-++.+..-|+.|.-.++|..|-..|.++-.+. .+ -+..|..-+.||.+ .+..+|+.++++++.+..+-.
T Consensus 31 eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 31 EEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHH
Confidence 3445677778888888889999999988887653 12 23455556666654 599999999999999876543
Q ss_pred ----HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 158 ----KAYGRMGLAYTQM-NDYKAALEAYTKAAELDPNDP------LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 158 ----~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
..+..+|.+|... .+++.|+.+|+++-+...... ..+...+..-..+++|.+|+ ..+.++++.
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai------~iyeqva~~ 183 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAI------DIYEQVARS 183 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 4556889988765 899999999999988654421 24455566667889999999 888899998
Q ss_pred ccCChHH
Q psy4130 227 VLSDPSI 233 (314)
Q Consensus 227 ~~~~p~~ 233 (314)
.+.|+-+
T Consensus 184 s~~n~LL 190 (288)
T KOG1586|consen 184 SLDNNLL 190 (288)
T ss_pred hccchHH
Confidence 8888865
No 233
>KOG0530|consensus
Probab=97.56 E-value=0.0026 Score=52.10 Aligned_cols=139 Identities=14% Similarity=0.053 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK-LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
+..+-++++.+.+.-+|.+-.+|..+-.+....|++. .-+..++.++..+.++--+|...-.+....+.++.-+.+..+
T Consensus 93 dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~ 172 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE 172 (318)
T ss_pred HHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3555566666666666666666666666666666665 566666666666666666666666666666666666666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhccccc-CCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 183 AAELDPNDPLYANNMQAAMSNLNNSSS-ASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 183 al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.++.+-.|-.+|...-.+......... +. -...+.-..+.+...|+|...|+.+..++..
T Consensus 173 Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~-le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 173 LLEEDIRNNSAWNQRYFVITNTKGVISKAE-LERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHhhhccchhheeeEEEEeccCCccHHH-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 666665554454433222222111111 10 0000022234555566666666666666553
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.0015 Score=59.83 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=103.3
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HHHHhc-------hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIES--LFQLYY-------KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
.|+=+.++.++.++.+ .++. ..+...+.. +|.... ..........++.......|+.+-.++..|..+.
T Consensus 201 ~gdR~~GL~~L~~~~~-~~~i-~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 201 SGDRELGLRLLWEASK-SENI-RSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CCcHHHHHHHHHHHhc-cCCc-chHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5677888999998876 3322 222222222 111100 0111111222233334455777888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKA 175 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~ 175 (314)
..|+.++|++.|++++..... ..-+++.++.++..+.+|++|..++.+.++.+.- .+...|..|.++...++.+.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence 999999999999998853322 2346889999999999999999999999997543 34556677888999998866
Q ss_pred HHHHHHHHHhh
Q psy4130 176 ALEAYTKAAEL 186 (314)
Q Consensus 176 A~~~~~~al~~ 186 (314)
+...-+++.++
T Consensus 359 ~~~~~~~a~~l 369 (468)
T PF10300_consen 359 AKEHKKEAEEL 369 (468)
T ss_pred hhhhHHHHHHH
Confidence 66666666544
No 235
>PRK10941 hypothetical protein; Provisional
Probab=97.52 E-value=0.0017 Score=54.68 Aligned_cols=77 Identities=23% Similarity=0.243 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
....++=.+|.+.++++.|+.+.+..+.++|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..-...+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34667888899999999999999999999999999999999999999999999999999999999998876554444
No 236
>KOG1585|consensus
Probab=97.52 E-value=0.0039 Score=50.63 Aligned_cols=124 Identities=17% Similarity=0.063 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCc
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKID-----PHY 156 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~ 156 (314)
-+..|..-+.+|...++|++|..++.++.+....+. .++-..+.....+..+.+++..+++|..+. |+-
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 355677888889999999999999999997654432 355667788888999999999999999874 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCC
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+..-...+--.....++++|++.|++++.+-..+ .+.+...+.++.++.++.+|.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 4444444555667789999999999998875443 345677788899999999885
No 237
>KOG2396|consensus
Probab=97.51 E-value=0.0023 Score=57.07 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND-YKAALEAYTKAAE 185 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~ 185 (314)
.-...|+.++...+.+...|.+......+.+.+.+--..|.+++..+|+++..|..-|...+.-+. .+.|...+.++++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 345678999999999999999988777777889999999999999999999999999998887776 9999999999999
Q ss_pred hCCCCHHHHHHHHHH
Q psy4130 186 LDPNDPLYANNMQAA 200 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~ 200 (314)
.+|+++..|...-..
T Consensus 169 ~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRM 183 (568)
T ss_pred cCCCChHHHHHHHHH
Confidence 999999887655443
No 238
>PRK10941 hypothetical protein; Provisional
Probab=97.49 E-value=0.0028 Score=53.31 Aligned_cols=79 Identities=15% Similarity=0.092 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..+.+.++=.++.+.++++.|+.+.+..+.++|+++.-+..+|.+|.++|.+..|..+++..++..|+++.+-.....+
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 3556777888899999999999999999999999999999999999999999999999999999999999876655443
No 239
>KOG1941|consensus
Probab=97.48 E-value=0.00062 Score=58.21 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----------NPVYYCNRAASNNKLKNYKLALRDCQIAIKID----- 153 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----- 153 (314)
..++..+|..+-...|+++|+.+..++.++... ...+.+.++..+..+|....|.++++++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 357888999999999999999999999886432 12467788999999999999999999988874
Q ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhccc
Q psy4130 154 -PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 154 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~ 207 (314)
|..+....-+|.+|...|+.+.|..-|+.+...-.. ...+....+.+.....-.
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~ 302 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQ 302 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 334566778899999999999999999988876432 123445555555444333
No 240
>KOG4507|consensus
Probab=97.47 E-value=0.00056 Score=61.92 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV-YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
..|....-.|+...|+.++..|+-..|.... ...++|.++.+-+-..+|-..+.+++.++...+-.++.+|..+..+++
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~ 691 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN 691 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh
Confidence 3444556689999999999999998886543 478999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130 173 YKAALEAYTKAAELDPNDPLYANNMQAAMS 202 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 202 (314)
.+.|++.|+.|++++|+++.+...|-.+.+
T Consensus 692 i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 692 ISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999999988777766655
No 241
>KOG2053|consensus
Probab=97.43 E-value=0.012 Score=56.08 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=91.1
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
.+++.+|.....+.++..| ...+ +....|..+++.|..++|.
T Consensus 22 ~~qfkkal~~~~kllkk~P---n~~~-----------------------------------a~vLkaLsl~r~gk~~ea~ 63 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHP---NALY-----------------------------------AKVLKALSLFRLGKGDEAL 63 (932)
T ss_pred hHHHHHHHHHHHHHHHHCC---CcHH-----------------------------------HHHHHHHHHHHhcCchhHH
Confidence 4578888888888888888 3322 3444556677777777777
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
.+++..-...+++...+-.+-.||..++++++|+.+|++++..+|. -+..+.+-.+|.+.+.|.+=-+.--+.-+..|+
T Consensus 64 ~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 64 KLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 6666655566666666777777777777777777777777777777 666666666677766665544443344445566
Q ss_pred CHH-HHHHHHHHHHHhcccccC
Q psy4130 190 DPL-YANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 190 ~~~-~~~~l~~~~~~~~~~~~A 210 (314)
++- .|..+..+.......++.
T Consensus 143 ~~yyfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 143 RAYYFWSVISLILQSIFSENEL 164 (932)
T ss_pred ccchHHHHHHHHHHhccCCccc
Confidence 543 334444444444444443
No 242
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.36 E-value=0.093 Score=46.68 Aligned_cols=192 Identities=11% Similarity=0.005 Sum_probs=119.4
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH-----HHH-Hhchhh-----hhhhhccCCCCCChhhHHHHHHHHHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIES-----LFQ-LYYKDE-----VLQWYSNINFSPTEEVKIEAEKYKNLGN 97 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~-----~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (314)
.+++..+|-.++.-...++|+..-...+.++. ++. ...... ..-| ...+....+....+..+..-|.
T Consensus 310 k~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw--e~~qs~DiDrqQLvh~L~~~Ak 387 (549)
T PF07079_consen 310 KQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW--EEIQSYDIDRQQLVHYLVFGAK 387 (549)
T ss_pred HHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH--HHHHhhcccHHHHHHHHHHHHH
Confidence 36777888888888888889442111111110 111 000000 0111 1111123334455677888888
Q ss_pred HHHhcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHh---------CC---CcHHHHHH
Q psy4130 98 TAMQQDK-PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR--DCQIAIKI---------DP---HYAKAYGR 162 (314)
Q Consensus 98 ~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~---------~p---~~~~~~~~ 162 (314)
-+.+.|. -++|++.++.+++..|.+..+-.. ...+-...|.+|+. .+-+.+.+ .| .+.+.-..
T Consensus 388 ~lW~~g~~dekalnLLk~il~ft~yD~ec~n~--v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQFTNYDIECENI--VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 9999888 889999999999988887643221 12222333444432 22222222 22 23344444
Q ss_pred HH--HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHH
Q psy4130 163 MG--LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ 235 (314)
Q Consensus 163 lg--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~ 235 (314)
|+ ..++..|+|.++.-+-.-..++.| .+.++..+|.|.....+|++|. +....+|.+.+++.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~----------~~l~~LP~n~~~~d 529 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAW----------EYLQKLPPNERMRD 529 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHH----------HHHHhCCCchhhHH
Confidence 54 457889999999999999999999 8999999999999999999996 88888888776543
No 243
>KOG4507|consensus
Probab=97.35 E-value=0.0015 Score=59.22 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=90.2
Q ss_pred cccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130 21 LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 21 ~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
...|+.-..+|+...|+.|+..++...| .... -...+++++..
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p---~~~~----------------------------------v~~v~la~~~~ 653 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAP---LQQD----------------------------------VPLVNLANLLI 653 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccCh---hhhc----------------------------------ccHHHHHHHHH
Confidence 4467777889999999999999999888 3211 13566777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
+.+-.-.|-..+.+++.+....+-.++.+|..+..+.+.+.|++.++.|++++|+++.....|-.+.+
T Consensus 654 ~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 654 HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888889999999999987788889999999999999999999999999999999877665554443
No 244
>KOG2610|consensus
Probab=97.34 E-value=0.0041 Score=52.88 Aligned_cols=157 Identities=11% Similarity=-0.121 Sum_probs=98.7
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
...|++.+|....++.++-.|++.-...+.-...+..............++.+-....|-..-..-.++..+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34677778888888888888843222111111122222111111111112221122333334455566777788889999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY----AKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
|.+.-+++++++|.+..+....+.++.-.+++.++.+...+.-...... .--|..-+.++..-+.|+.|++.|.+-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 9999999999999988888888888888899999988887654432221 133556677888888999999888864
Q ss_pred H
Q psy4130 184 A 184 (314)
Q Consensus 184 l 184 (314)
+
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 4
No 245
>KOG3824|consensus
Probab=97.33 E-value=0.0013 Score=55.10 Aligned_cols=81 Identities=16% Similarity=0.071 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
...+..-...+.-..+.|+.++|...|+.++.++|+++.++...|......++.-+|-++|-+|+.++|.+.+++.+.+.
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34455566667777889999999999999999999999999999999999999999999999999999999999887764
Q ss_pred H
Q psy4130 166 A 166 (314)
Q Consensus 166 ~ 166 (314)
.
T Consensus 193 T 193 (472)
T KOG3824|consen 193 T 193 (472)
T ss_pred c
Confidence 3
No 246
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.33 E-value=0.0082 Score=43.08 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=72.4
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q psy4130 90 EKYKNL--GNTAMQQDKPEQAVIEYSKAIDCDNS------------NPVYYCNRAASNNKLKNYKLALRDCQIAIKI--- 152 (314)
Q Consensus 90 ~~~~~~--g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 152 (314)
.+|..+ |.-.+..|.|++|...+++++....+ ++-++..|+.++..+|+|++++....+++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 344444 44456679999999999999986432 2457888999999999999998888888754
Q ss_pred ----CCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 153 ----DPHYA----KAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 153 ----~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+.+.. .+.+..+.++..+|+.++|+..|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44433 45678899999999999999999988764
No 247
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.33 E-value=0.0017 Score=39.86 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
.++.+|..++++|+|++|..+.+.+++++|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 345555566666666666666666666666665554444443
No 248
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.32 E-value=0.016 Score=50.39 Aligned_cols=155 Identities=12% Similarity=-0.018 Sum_probs=103.6
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh---hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD---EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
...|+++.|.+.|+..+. +| +.-...+..+|...... +....+ .......-|..++++...-...+..|+
T Consensus 131 l~eG~~~~Ar~kfeAMl~-dP---EtRllGLRgLyleAqr~GareaAr~y---Ae~Aa~~Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD-DP---ETRLLGLRGLYLEAQRLGAREAARHY---AERAAEKAPQLPWAARATLEARCAAGD 203 (531)
T ss_pred HhcCchHHHHHHHHHHhc-Ch---HHHHHhHHHHHHHHHhcccHHHHHHH---HHHHHhhccCCchHHHHHHHHHHhcCC
Confidence 357899999999988755 66 55555565666544422 222221 122233445556677777777888999
Q ss_pred HHHHHHHHHHHHHc---CCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 105 PEQAVIEYSKAIDC---DNSNPV---YYCNRAASNN-KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 105 ~~~A~~~~~~al~~---~p~~~~---~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
|+.|++..+..... .++-.+ +-..-+.+.. -.-+...|..+..+++++.|+...+-..-+.+++..|+..++-
T Consensus 204 Wd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 204 WDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred hHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhh
Confidence 99999998876653 222211 1111122111 2246888899999999999998888888888888999888888
Q ss_pred HHHHHHHhhCCC
Q psy4130 178 EAYTKAAELDPN 189 (314)
Q Consensus 178 ~~~~~al~~~p~ 189 (314)
..++.+.+..|.
T Consensus 284 ~ilE~aWK~ePH 295 (531)
T COG3898 284 KILETAWKAEPH 295 (531)
T ss_pred hHHHHHHhcCCC
Confidence 888888888774
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.30 E-value=0.00056 Score=37.32 Aligned_cols=28 Identities=32% Similarity=0.254 Sum_probs=11.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
+.+|.++...|++++|+..|+++++..|
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3334444444444444444444444333
No 250
>KOG2471|consensus
Probab=97.27 E-value=0.0013 Score=58.42 Aligned_cols=141 Identities=12% Similarity=0.037 Sum_probs=115.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------cHHHHHHHH
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA-IKIDPH--------YAKAYGRMG 164 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg 164 (314)
.....+....+...+....+-++....+.+.+....+..++-.|+|.+|.+.+... +...|. ....|.++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 33445567777888888888888777888899999999999999999999887653 222333 235678999
Q ss_pred HHHHHcCCHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 165 LAYTQMNDYKAALEAYTKAAE-L--------DP---------NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
.+++.++.|.-+..+|.++++ . .| ..-++.+++|..+...|+.-.|. .-+....+.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Af------qCf~~av~v 364 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAF------QCFQKAVHV 364 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHH------HHHHHHHHH
Confidence 999999999999999999996 1 12 23468999999999999999998 999999999
Q ss_pred ccCChHHHHHHHHh
Q psy4130 227 VLSDPSIQQVFGEL 240 (314)
Q Consensus 227 ~~~~p~~~~~l~~~ 240 (314)
.-.+|.+|-.++..
T Consensus 365 fh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 365 FHRNPRLWLRLAEC 378 (696)
T ss_pred HhcCcHHHHHHHHH
Confidence 99999999988854
No 251
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.26 E-value=0.00063 Score=37.10 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 252
>KOG3824|consensus
Probab=97.25 E-value=0.0014 Score=54.97 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 128 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
+.|.-..+.|+.++|...|+.|+.++|++++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3444556789999999999999999999999999999999999999999999999999999999988777654
No 253
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.19 E-value=0.0082 Score=42.68 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=73.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHHhCCCcHHHH
Q psy4130 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKN-----------YKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 160 (314)
++..++.+|++-+|++..+..+...+++. ..+..-|.++.++.. .-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778999999999999999999887766 455666777765532 3468899999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+.+|.-+-....|+++..-.++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777777788888888887764
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.19 E-value=0.015 Score=44.45 Aligned_cols=109 Identities=13% Similarity=-0.006 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
....+.....+....++.+++...+.-.--+.|..+.+-..-|.++...|+|.+|+..++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34567777788888889999999888888889999999999999999999999999999999888899998888899999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
..+++..-=.. -.++++..+ ++.+.....
T Consensus 89 ~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv~ 117 (160)
T PF09613_consen 89 YALGDPSWRRY-ADEVLESGA-DPDARALVR 117 (160)
T ss_pred HHcCChHHHHH-HHHHHhcCC-ChHHHHHHH
Confidence 99888765432 233455444 444444333
No 255
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.17 E-value=0.0009 Score=37.53 Aligned_cols=21 Identities=14% Similarity=0.139 Sum_probs=7.7
Q ss_pred HHHHHHHHccCHHHHHHHHHH
Q psy4130 128 NRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 128 ~la~~~~~~~~~~~A~~~~~~ 148 (314)
++|.+|...|+|++|+.+|++
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 333333333333333333333
No 256
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.16 E-value=0.093 Score=45.00 Aligned_cols=169 Identities=20% Similarity=0.129 Sum_probs=119.3
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-----hhhhhhhccCCCCCChhhHHHHHHHHHHHH
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-----DEVLQWYSNINFSPTEEVKIEAEKYKNLGN 97 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 97 (314)
.+........+..|+..+..+-.... ......++.+|..... ..+..|+. .......+...+.+|.
T Consensus 47 ~~~~~~~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~------~~a~~g~~~a~~~lg~ 117 (292)
T COG0790 47 NGAGSAYPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYR------CAAADGLAEALFNLGL 117 (292)
T ss_pred ccccccccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHH------HHhhcccHHHHHhHHH
Confidence 33444567888999999998876333 2334455555554442 22333322 2223345667888999
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 98 TAMQ----QDKPEQAVIEYSKAIDCDNSN-PVYYCNRAASNNKLK-------NYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 98 ~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
.+.. ..++.+|..+|+++....-.. ..+.+.+|.+|..-. +...|...|.++-... ++.+.+.+|.
T Consensus 118 ~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~ 195 (292)
T COG0790 118 MYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGR 195 (292)
T ss_pred HHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHH
Confidence 9887 559999999999999874333 234788888887642 3347999999988876 8899999998
Q ss_pred HHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 166 AYTQ----MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 166 ~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
+|.. ..++.+|..+|.++.+... ....+.++ ++...|
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 8765 3489999999999998876 78888888 666666
No 257
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.16 E-value=0.0032 Score=43.56 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcc
Q psy4130 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNN 206 (314)
Q Consensus 143 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 206 (314)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++++ ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 445555566666666666666666666666666666666666655543 3344444444444443
No 258
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.12 E-value=0.0033 Score=38.54 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
.++.+|..+.++|+|++|..+++.+++++|++..+.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4566777777777777777777777777777766654443
No 259
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.08 E-value=0.0075 Score=41.71 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY--AKAYGRMGLAYTQMND 172 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~ 172 (314)
.+..+++.+..+|++..+.+.+|.++...|++++|++.+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667899999999999999999999999999999999999999999876 3444444444444444
No 260
>KOG2047|consensus
Probab=97.07 E-value=0.016 Score=53.43 Aligned_cols=167 Identities=11% Similarity=0.073 Sum_probs=100.0
Q ss_pred hhcHHHHHHHHHHHc-CCCCCCCCC----chhhHHHHHHHhchhhhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 30 KEGIEVAVECLCKAY-DIPDNIDPA----SNVDIESLFQLYYKDEVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al-~~~p~~~~~----~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
.++..+-+..|..|+ ..+|..... ..+.++.+|...+....+.. ......-.-....+.+..|...|..-.+..
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 455666677776665 466643221 12223345555554322211 001111112233455677777777777777
Q ss_pred CHHHHHHHHHHHHHcCCC-------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNS-------------------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
+++.|..+.+.|+.. |. +..+|...+......|-++.....|++.+.+.--.+....+.|
T Consensus 440 ~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYA 518 (835)
T ss_pred hHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 777777777777653 21 2245666677777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDP--NDPLYANNM 197 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 197 (314)
..+....-+++|.+.|++.+.+.+ .-.++|..+
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tY 553 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTY 553 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHH
Confidence 777777777888888887777653 334444433
No 261
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.05 E-value=0.18 Score=44.16 Aligned_cols=139 Identities=16% Similarity=0.027 Sum_probs=106.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcH---HHHHHHHHHHHH-c
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID---PHYA---KAYGRMGLAYTQ-M 170 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~---~~~~~lg~~~~~-~ 170 (314)
.....|+.+.|+.+-+.+-...|.-+.++...-......|+|+.|++..+...... ++.. .+-..-+.+... .
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 34568899999999999999999888877776667778899999998887765442 3222 222222332222 3
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
-+...|...-.+++++.|+...+-..-+..+.+.|+..++ ..+.+...+...+|+++.++..+.++
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg-------~~ilE~aWK~ePHP~ia~lY~~ar~g 308 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG-------SKILETAWKAEPHPDIALLYVRARSG 308 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh-------hhHHHHHHhcCCChHHHHHHHHhcCC
Confidence 3678888888999999999988888889999999999999 67778888888999999988877443
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.04 E-value=0.0015 Score=36.67 Aligned_cols=28 Identities=39% Similarity=0.637 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+|.+||.++...|+|++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999996654
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.01 E-value=0.027 Score=49.45 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHH-HHHhCCCcHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC----DNSNPVYYCNRAASNNK---LKNYKLALRDCQI-AIKIDPHYAK 158 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~ 158 (314)
-.++....+=..|....+|+.-+...+..-.+ -+..+.+....|.++.+ .|+.++|+..+.. .....+.+++
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34555666777788899999998888876555 44566777888999998 8999999999999 4455677899
Q ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 159 AYGRMGLAYTQM---------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 159 ~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.+..+|.+|... ...++|+.+|.++.+++|+. -.-.|++.++...|...+..
T Consensus 219 ~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 219 TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccch
Confidence 999999988652 24789999999999999753 45577778888888765554
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.98 E-value=0.0016 Score=34.65 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
+..+|.++..++++++|+.+++++++++|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44444444444444444444444444444
No 265
>KOG3364|consensus
Probab=96.96 E-value=0.025 Score=41.64 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130 122 NPVYYCNRAASNNKLK---NYKLALRDCQIAIK-IDPHY-AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (314)
.....+++|.++.+.. +..+.+.+++..++ -+|.. -+..+.|+..++++++|+.++.+++..++..|+|..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4556788888888765 46678889999886 44443 3678889999999999999999999999999999887766
Q ss_pred HHHHHHHh
Q psy4130 197 MQAAMSNL 204 (314)
Q Consensus 197 l~~~~~~~ 204 (314)
--.+..+.
T Consensus 111 k~~ied~i 118 (149)
T KOG3364|consen 111 KETIEDKI 118 (149)
T ss_pred HHHHHHHH
Confidence 65555544
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.95 E-value=0.045 Score=48.16 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C---
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKID---P--- 154 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p--- 154 (314)
.......|...+.+..+.|.++.|...+.++...++. .+.+.+..+.++...|+..+|+..++..+... +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4566778999999999999999999999998886522 46677888999999999999999999888811 0
Q ss_pred ----------------------------CcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 155 ----------------------------HYAKAYGRMGLAYTQM------NDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 155 ----------------------------~~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
..+.++..+|...... +..++++..|.+++.++|+...+|+.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0125677788887777 889999999999999999999999999999
Q ss_pred HHHhccccc
Q psy4130 201 MSNLNNSSS 209 (314)
Q Consensus 201 ~~~~~~~~~ 209 (314)
+...-+.+.
T Consensus 302 ~~~~~~~~~ 310 (352)
T PF02259_consen 302 NDKLLESDP 310 (352)
T ss_pred HHHHHHhhh
Confidence 887655544
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.94 E-value=0.073 Score=46.86 Aligned_cols=141 Identities=12% Similarity=0.018 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQ---QDKPEQAVIEYSKA-IDCDNSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIK 151 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~ 151 (314)
.......-+..|.++.+ .|+.++|+..+..+ ....+.+++.+..+|.+|... ...++|+.+|.++..
T Consensus 175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 45566778888888988 99999999999994 455678899999999998754 347899999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh-----------CCCCHHHHHHHHHHHHHhcccccCCCCCCCcch
Q psy4130 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA-EL-----------DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPG 219 (314)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~-----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (314)
++|+. ..=.+++.++...|...+....+++.. .+ .-.+-...-.+..+..-.|++++|. ..
T Consensus 255 ~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~------~a 327 (374)
T PF13281_consen 255 IEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAI------QA 327 (374)
T ss_pred CCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHH------HH
Confidence 99653 444566677777665333322222211 11 1123344556677777788888886 55
Q ss_pred HHHHHHhccCChHHHH
Q psy4130 220 LSEMSTKVLSDPSIQQ 235 (314)
Q Consensus 220 ~~~~~~~~~~~p~~~~ 235 (314)
...+.+. +|..|.
T Consensus 328 ~e~~~~l---~~~~W~ 340 (374)
T PF13281_consen 328 AEKAFKL---KPPAWE 340 (374)
T ss_pred HHHHhhc---CCcchh
Confidence 5454433 355554
No 268
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.92 E-value=0.0016 Score=52.31 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=47.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130 132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 132 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (314)
...+.++.+.|.+.|.+++.+.|.+...|+++|....+.|+++.|...|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345667788888888888888888888888888888888888888888888888888754
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.86 E-value=0.081 Score=40.52 Aligned_cols=113 Identities=14% Similarity=0.073 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
..+..+..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..++.+..-.|..+.+.-.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 34555666677788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 204 LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 204 ~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
+++.+= ..+...+.....||+...++..+....
T Consensus 91 ~~D~~W--------r~~A~evle~~~d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 91 LGDPSW--------RRYADEVLESGADPDARALVRALLARA 123 (160)
T ss_pred cCChHH--------HHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 876521 111122223334777777777665553
No 270
>KOG3617|consensus
Probab=96.80 E-value=0.2 Score=47.96 Aligned_cols=123 Identities=17% Similarity=0.115 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC---------------------DNSNPVYYCNRAASNNKLKNYKLALRDCQ 147 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 147 (314)
...|...|..+...|+.+.|+.+|..|-.. ...+..+.|.+|.-|...|++.+|+..|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345667777788888888888888776543 12345678889999999999999999888
Q ss_pred HHHHh------CCCcH--HHH------------HHHHHHHHHcC-CHHHHHHHHHHH------H----------------
Q psy4130 148 IAIKI------DPHYA--KAY------------GRMGLAYTQMN-DYKAALEAYTKA------A---------------- 184 (314)
Q Consensus 148 ~al~~------~p~~~--~~~------------~~lg~~~~~~g-~~~~A~~~~~~a------l---------------- 184 (314)
+|-.. ...+. +-+ ..-+..|...| ....|...|.+| +
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 75433 22111 111 11122233333 344444433321 1
Q ss_pred -hhCC-CCHHHHHHHHHHHHHhcccccCC
Q psy4130 185 -ELDP-NDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 185 -~~~p-~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.++| .++......+.......+|++|.
T Consensus 1072 ~DLd~~sDp~ll~RcadFF~~~~qyekAV 1100 (1416)
T KOG3617|consen 1072 KDLDAGSDPKLLRRCADFFENNQQYEKAV 1100 (1416)
T ss_pred HhcCCCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 2344 36778888888888888898885
No 271
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.79 E-value=0.0024 Score=33.89 Aligned_cols=33 Identities=52% Similarity=0.795 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
.+++.+|.++...+++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999998863
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.12 Score=40.77 Aligned_cols=129 Identities=15% Similarity=0.125 Sum_probs=91.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCH
Q psy4130 100 MQQDKPEQAVIEYSKAIDCDNSNPV---YYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDY 173 (314)
Q Consensus 100 ~~~~~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~ 173 (314)
...+.. +.+...++....+|.... +-..++..+...+++++|+..++.++....+. ..+-.+|+.++..+|.+
T Consensus 64 ~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~ 142 (207)
T COG2976 64 VQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA 142 (207)
T ss_pred HhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH
Confidence 334444 555666666666655543 34567888999999999999999999765443 35678999999999999
Q ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 174 KAALEAYTKAAELDPN-DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
++|+..+..... ++ .+..-...|.++...|+.++|+ ..+....... .+|..+.++.
T Consensus 143 D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar------~ay~kAl~~~-~s~~~~~~lq 199 (207)
T COG2976 143 DAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEAR------AAYEKALESD-ASPAAREILQ 199 (207)
T ss_pred HHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHH------HHHHHHHHcc-CChHHHHHHH
Confidence 999988874432 22 1234567899999999999998 7776666665 4444444433
No 273
>KOG1550|consensus
Probab=96.72 E-value=0.089 Score=49.51 Aligned_cols=170 Identities=19% Similarity=0.146 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHh-ch-h----hhhhhhccCCCC-CChhhHHHHHHHHHHHHHHHhcC-
Q psy4130 32 GIEVAVECLCKAYDIPDNIDPASNVDIESLFQLY-YK-D----EVLQWYSNINFS-PTEEVKIEAEKYKNLGNTAMQQD- 103 (314)
Q Consensus 32 ~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~-~~-~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~- 103 (314)
+...|..+|+.+.+..- -.....++.+|... .. . .+..+....... ........+.+.+.+|.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 46788888888877665 45556666666554 11 1 111121111000 00001113446778899998743
Q ss_pred ----CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q psy4130 104 ----KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MND 172 (314)
Q Consensus 104 ----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 172 (314)
++..|..+|.++-+.. ++.+.+.+|.++..-. ++..|..+|..|... .++.+.++++.++.. .-+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCC
Confidence 7788999999998874 5667788999988655 678999999999876 578999999998875 347
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cccccC
Q psy4130 173 YKAALEAYTKAAELDPNDPLYANNMQAAMSNL-NNSSSA 210 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A 210 (314)
...|..++.++.+.+ ++.+.+.++.++..- +.++.+
T Consensus 380 ~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred HHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence 899999999999987 344455555554432 444444
No 274
>KOG2047|consensus
Probab=96.64 E-value=0.072 Score=49.38 Aligned_cols=185 Identities=11% Similarity=0.004 Sum_probs=119.6
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCC-chhhHHH--HHHHhc-hhhhhhh-hcc-CCCC------------CChhhHH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPA-SNVDIES--LFQLYY-KDEVLQW-YSN-INFS------------PTEEVKI 87 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~-~~~~l~~--~~~~~~-~~~~~~~-~~~-~~~~------------~~~~~~~ 87 (314)
.++..|+++.|...|+++++.+-...++ ..+++.. .-.... .+++... ... .... .-..--.
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr 475 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR 475 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence 3456889999999999998876522222 2222222 100000 0111000 000 0000 0011123
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcHHHHHH---
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP--HYAKAYGR--- 162 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~--- 162 (314)
....|...++.....|-++.....|++.+.+.--.|....|.|..+....-++++.+.|++.+.+.+ .-.+.|..
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 4567888888888999999999999999999888899999999999999999999999999999863 43444433
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccccC
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A 210 (314)
....-+.-.+.+.|...|++|++..|.. ..++..++.+..+.|-...|
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~a 605 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHA 605 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333444558899999999999988842 23455555555555544444
No 275
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.63 E-value=0.0062 Score=51.24 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 111 EYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR-MGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 111 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
.|.++....|.++..|...+....+.|-|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+++.++|+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555667777777777766667777777777777777777777777765 333456677777777777777777777
Q ss_pred CHHHHHHH
Q psy4130 190 DPLYANNM 197 (314)
Q Consensus 190 ~~~~~~~l 197 (314)
++..|...
T Consensus 175 ~p~iw~ey 182 (435)
T COG5191 175 SPRIWIEY 182 (435)
T ss_pred CchHHHHH
Confidence 77766544
No 276
>KOG4814|consensus
Probab=96.62 E-value=0.031 Score=51.54 Aligned_cols=98 Identities=14% Similarity=0.012 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
...+++-|.-+++..+|..+++.|...+..-|.+ +....+++.||..+.+.+.|++++++|-+.+|.++-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3457778888999999999999999999876654 4567889999999999999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
.-.+....+.-++|+.+..+....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 888889999999999888776554
No 277
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.60 E-value=0.077 Score=46.96 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=93.3
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CC------------CCH---HHHHHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------------DN------------SNP---VYYCNRAAS 132 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la~~ 132 (314)
....|.+.+.+..++.++..+|++..|.+..++||-. ++ .|. .+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 3566778899999999999999999999999998732 11 122 244556677
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC-cHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhc
Q psy4130 133 NNKLKNYKLALRDCQIAIKIDPH-YAKA-YGRMGLAYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLN 205 (314)
Q Consensus 133 ~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~ 205 (314)
+.+.|.+..|.++++-.+.++|. ++-. .+.+=....+.++++--+..++........ -|..-+.++.++..++
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 88899999999999999999999 7744 444444556778888777777765542111 2346677788888888
Q ss_pred cc
Q psy4130 206 NS 207 (314)
Q Consensus 206 ~~ 207 (314)
+.
T Consensus 193 ~~ 194 (360)
T PF04910_consen 193 KE 194 (360)
T ss_pred Cc
Confidence 77
No 278
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.58 E-value=0.05 Score=44.33 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=71.3
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCC---CHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCCC------cHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDC----DNS---NPVYYCNRAASNNKLKNYK-------LALRDCQIAIKIDPH------YAK 158 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~-------~A~~~~~~al~~~p~------~~~ 158 (314)
+.....+++|++.|.-|+-. ... -+.++..+|.+|..+++.+ .|+..|.+++..... ...
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 33456788888888877753 111 2567888999999999854 566666666655422 347
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHH
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-LYANNMQA 199 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~ 199 (314)
..+.+|.+..+.|++++|..+|.+++.....+. .....++.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 888999999999999999999999998644332 34444443
No 279
>KOG0530|consensus
Probab=96.51 E-value=0.073 Score=43.96 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=100.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-H
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK-A 175 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~ 175 (314)
++.+...-..|+..-+.+|.++|.+-.+|..+-.|+..+ .+..+-+.++.+.+.-+|++-..|...-.+...+|++. .
T Consensus 52 I~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 52 IIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccc
Confidence 345566778899999999999999999998888888765 46788899999999999999999999999999999988 8
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
-++..+.++..+.++-.+|.....+....+.++.-.
T Consensus 132 ELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred hHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 889999999999999999999999999888887653
No 280
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.086 Score=48.34 Aligned_cols=114 Identities=19% Similarity=0.087 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH-HHHhCCCcHHHHHHH------HHHH
Q psy4130 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI-AIKIDPHYAKAYGRM------GLAY 167 (314)
Q Consensus 95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------g~~~ 167 (314)
+...+...++...+......++..+|.+..++.+++.+....|....++..+.. +....|++......+ +...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 566677788888999999999999999999999999998887776666655555 999999988766665 8899
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 208 (314)
..+|+..++.....++..+.|.++.+...+.....+.-++.
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~ 193 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP 193 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch
Confidence 99999999999999999999999887777776655555544
No 281
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.50 E-value=0.0051 Score=49.49 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=56.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA 157 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 157 (314)
.....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456789999999999999999999999999999999999999999999999999999864
No 282
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.49 E-value=0.17 Score=44.56 Aligned_cols=128 Identities=17% Similarity=0.269 Sum_probs=89.0
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
...|.++.|...+.++...++..... .+......+..+...|+..+
T Consensus 157 Rk~g~~~~A~~~l~~~~~~~~~~~~~----------------------------------~~~v~~e~akllw~~g~~~~ 202 (352)
T PF02259_consen 157 RKAGNFQLALSALNRLFQLNPSSESL----------------------------------LPRVFLEYAKLLWAQGEQEE 202 (352)
T ss_pred HHCCCcHHHHHHHHHHhccCCcccCC----------------------------------CcchHHHHHHHHHHcCCHHH
Confidence 34678888888888887766522110 23456666777777777777
Q ss_pred HHHHHHHHHHc-CC---------------------------------CCHHHHHHHHHHHHHc------cCHHHHHHHHH
Q psy4130 108 AVIEYSKAIDC-DN---------------------------------SNPVYYCNRAASNNKL------KNYKLALRDCQ 147 (314)
Q Consensus 108 A~~~~~~al~~-~p---------------------------------~~~~~~~~la~~~~~~------~~~~~A~~~~~ 147 (314)
|+..++..+.. .. ..+.++..+|...... +..++++..|.
T Consensus 203 Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~ 282 (352)
T PF02259_consen 203 AIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYK 282 (352)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 77777766661 00 0124556666666666 88899999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhhCCC
Q psy4130 148 IAIKIDPHYAKAYGRMGLAYTQMND-----------------YKAALEAYTKAAELDPN 189 (314)
Q Consensus 148 ~al~~~p~~~~~~~~lg~~~~~~g~-----------------~~~A~~~~~~al~~~p~ 189 (314)
++++++|....+|+..|..+...=+ ...|+..|-+++...++
T Consensus 283 ~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 283 EATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999887765422 13477788888888776
No 283
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.35 Score=40.84 Aligned_cols=65 Identities=17% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccccc
Q psy4130 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 145 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~ 209 (314)
.+++.+..+|++..+-+.++..+...|+.++|.+.+-..++.+-. +..+...+-.++...|..+.
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 344455555666666666666666666666665555555554332 34455555555555554443
No 284
>KOG3617|consensus
Probab=96.40 E-value=0.052 Score=51.70 Aligned_cols=97 Identities=18% Similarity=0.106 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HcCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAI----------DCDNS----------NPVYYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al----------~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
-..|++.+..+...++.+.|+++|+++= .-+|. ++..|..-|..+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 4568899999999999999999998752 22343 345677788888899999999999988
Q ss_pred HHHh---------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 149 AIKI---------------------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 149 al~~---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
|-.. ...+-.+.|.||.-|...|++.+|+..|.+|-.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 6533 345667889999999999999999988877543
No 285
>KOG1585|consensus
Probab=96.36 E-value=0.18 Score=41.31 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHH
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCD-----NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGR 162 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 162 (314)
..+........+.++..+|+++..+. |+-+..-...+.=.....++++|++.|++++.+-..+ .+.+..
T Consensus 76 qaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 76 QAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 33344444455555555555555442 2222222223333344455566666666655543221 133344
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy4130 163 MGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~ 182 (314)
.+.++.+..++.+|-..+.+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHH
Confidence 45555555566555544444
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.29 E-value=0.11 Score=45.19 Aligned_cols=87 Identities=10% Similarity=0.042 Sum_probs=48.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130 111 EYSKAIDCDNSNPVYYCNRAASNNKLKN------------YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178 (314)
Q Consensus 111 ~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 178 (314)
.|++.++.+|.+..+|..+.......-. .+..+..|++|++.+|++...+..+-.+..+..+.++..+
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555555566666666555444333211 3445556666666666666555555555555555566566
Q ss_pred HHHHHHhhCCCCHHHHHHH
Q psy4130 179 AYTKAAELDPNDPLYANNM 197 (314)
Q Consensus 179 ~~~~al~~~p~~~~~~~~l 197 (314)
-+++++..+|++...|..+
T Consensus 87 ~we~~l~~~~~~~~LW~~y 105 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREY 105 (321)
T ss_pred HHHHHHHHCCCChHHHHHH
Confidence 6666666666655555443
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.23 E-value=0.35 Score=36.52 Aligned_cols=87 Identities=10% Similarity=-0.113 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
..+...........+++++...+...--+.|..+.+-..-|.++...|+|.+|+..++....-.+..+.+--.++.|+..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 44555566666689999999998887788999999999999999999999999999999999988889888899999999
Q ss_pred cCCHHHH
Q psy4130 170 MNDYKAA 176 (314)
Q Consensus 170 ~g~~~~A 176 (314)
+|+.+-=
T Consensus 91 l~Dp~Wr 97 (153)
T TIGR02561 91 KGDAEWH 97 (153)
T ss_pred cCChHHH
Confidence 9987643
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.15 E-value=0.17 Score=39.94 Aligned_cols=101 Identities=17% Similarity=0.050 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHH---
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAK--- 158 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~--- 158 (314)
....++..+|..|.+.|+++.|++.|.++....... .+.+.++-.+.+..++|.....++.++-.+-.. +..
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 345689999999999999999999999988765332 356777888888899999999999998876432 232
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130 159 -AYGRMGLAYTQMNDYKAALEAYTKAAELD 187 (314)
Q Consensus 159 -~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (314)
....-|..+...++|..|-..|-.+....
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 23345777888899999998887766544
No 289
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.054 Score=45.11 Aligned_cols=75 Identities=25% Similarity=0.310 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 199 (314)
...++=.++...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++..|+.+.+-.....
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 445666678888999999999999999999999999999999999999999999999999999998776544433
No 290
>KOG0546|consensus
Probab=96.09 E-value=0.0086 Score=51.28 Aligned_cols=118 Identities=27% Similarity=0.296 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN-----------S--------NPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----------~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
......|...++.++|..|..-|.++++.-. + -...+.+++.+-.+.+.+..|+.....++
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~ 302 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL 302 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence 4455667788999999999999998886421 1 12356678899999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 207 (314)
..++....++++++..+....++++|++.+..+....|++..+...+..+.....++
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999998877777666555444
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.08 E-value=0.78 Score=39.11 Aligned_cols=130 Identities=15% Similarity=0.044 Sum_probs=94.8
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC-CHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD-KPEQ 107 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~ 107 (314)
..|+++.|..+|.++-...+. .+ .......++.+++.|......+ +++.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~--~~----------------------------~~~~~~La~~~yn~G~~l~~~~~~~~~ 54 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNS--LD----------------------------PDMAEELARVCYNIGKSLLSKKDKYEE 54 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhc--CC----------------------------cHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 578999999999997554420 11 1223355788999999999999 9999
Q ss_pred HHHHHHHHHHcC----C---CC-------HHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 108 AVIEYSKAIDCD----N---SN-------PVYYCNRAASNNKLKNYK---LALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 108 A~~~~~~al~~~----p---~~-------~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
|+.++++++++- + .. ..++..++.+|...+.++ +|....+.+-.-.|+.+..+...-.++...
T Consensus 55 a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~ 134 (278)
T PF08631_consen 55 AVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKS 134 (278)
T ss_pred HHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhcc
Confidence 999999999872 1 11 245677888998877654 455555556666788777775555555558
Q ss_pred CCHHHHHHHHHHHHhhCC
Q psy4130 171 NDYKAALEAYTKAAELDP 188 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p 188 (314)
++.+++.+.+.+++..-+
T Consensus 135 ~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 135 FDEEEYEEILMRMIRSVD 152 (278)
T ss_pred CChhHHHHHHHHHHHhcc
Confidence 999999999999888644
No 292
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.96 E-value=0.085 Score=46.44 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CH----------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS--------NP----------VYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~----------~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
.+-..-|..++++++|..|+.-|..+|++... .+ .+-..+..||.++++.+-|+....+.|.
T Consensus 177 ~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ 256 (569)
T PF15015_consen 177 QVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSIN 256 (569)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhh
Confidence 34445566778888888888888888876322 11 2345689999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
++|.+..-+.+.+.+...+.+|.+|-..+--+.
T Consensus 257 lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 257 LNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876554433
No 293
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.08 Score=44.11 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
..++=.++...++++.|..+.++.+.++|+++.-+...|.+|.++|-+..|+ ..+.-.....|++|.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl------~dl~~~~~~~P~~~~ 250 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVAL------EDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhH------HHHHHHHHhCCCchH
Confidence 3344445666777777777777777777777777777777777777777777 777777777777764
No 294
>KOG1550|consensus
Probab=95.90 E-value=0.17 Score=47.66 Aligned_cols=115 Identities=19% Similarity=0.130 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQ-----QDKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLK-----NYKLALRDCQIAI 150 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al 150 (314)
..+..+...+|.++.. ..+.+.|+.+|+.+.+. .-..+.+.+.+|.+|.+.. ++..|+..+.++.
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA 320 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH
Confidence 3456667778877764 46899999999999771 1125567889999999853 7888999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 151 KIDPHYAKAYGRMGLAYTQMN---DYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 151 ~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
... ++.+.+.+|.++..-. ++..|.++|..|... .+..+.++++.|+..=
T Consensus 321 ~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G 373 (552)
T KOG1550|consen 321 ELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG 373 (552)
T ss_pred hcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence 874 6788899999988655 678999999988764 4678999999997753
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.83 E-value=0.41 Score=40.81 Aligned_cols=124 Identities=22% Similarity=0.066 Sum_probs=86.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---Cc------
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCD----NSN----PVYYCNRAASNNKLK-NYKLALRDCQIAIKI----DP---HY------ 156 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p---~~------ 156 (314)
..++|+++.|...|.++-... |+. ...+++.|.-....+ +++.|+.+++++..+ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999998887654 332 356888999999999 999999999999988 22 11
Q ss_pred -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc
Q psy4130 157 -AKAYGRMGLAYTQMNDYK---AALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL 228 (314)
Q Consensus 157 -~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 228 (314)
...+..++.++...+.++ +|....+.+-.-.|+.+..+...-.+..+.++.+++. ..+..++....
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~------~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE------EILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH------HHHHHHHHhcc
Confidence 246778899998888765 4555555666667877776644444444466666665 55555555544
No 296
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.19 Score=46.20 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=96.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCN--RAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
+.-.-++..+...+..+|.++..+.. +...+...++...+......++..+|.+..++.+|+.+....|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344777788888888888886443 4777778899999999999999999999999999999998888777776666
Q ss_pred HH-HHhhCCCCHHHHHHH------HHHHHHhcccccCCCCCCCcchHHHHHHhccCChHH
Q psy4130 181 TK-AAELDPNDPLYANNM------QAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSI 233 (314)
Q Consensus 181 ~~-al~~~p~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~ 233 (314)
.. +....|++......+ +.....+++..++. ..+.......+.+|++
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAE------LALERAVDLLPKYPRV 178 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHH------HHHHHHHHhhhhhhhh
Confidence 65 888999998877777 66666666666665 5666666666777654
No 297
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.79 E-value=0.027 Score=32.26 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
.++.++|.+|...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34556666666666666666666666554
No 298
>KOG3364|consensus
Probab=95.78 E-value=0.16 Score=37.52 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQD---KPEQAVIEYSKAID-CDNS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
....++++.++.+.. +..+.+..++..++ ..|. ..++.+.++..+.+.++|++++.+++..++..|++..+....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 345777888887654 57788999999997 4444 346788899999999999999999999999999998876544
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.72 E-value=0.2 Score=37.76 Aligned_cols=105 Identities=8% Similarity=-0.032 Sum_probs=82.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
+.....+-....++.++...+...--+.|+.+..-..-|.++...|+|.+|+..++...+-.+..+...-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34444455558999999999999999999999999999999999999999999999999988888888899999999888
Q ss_pred ccccCCCCCCCcchHHHHHH---hccCChHHHHHHHHhh
Q psy4130 206 NSSSASGSGGVFPGLSEMST---KVLSDPSIQQVFGELF 241 (314)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~---~~~~~p~~~~~l~~~~ 241 (314)
+.+ ....+. ..-.+|+...+...+.
T Consensus 93 Dp~-----------Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 93 DAE-----------WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ChH-----------HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 652 222222 2234566666666654
No 300
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.62 E-value=0.13 Score=37.07 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=70.6
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
.-|.+++|...+.++++..-+.|.... -+.+..++-.+..++.++...|+|+++
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEa--------------------------FDh~GFDA~chA~Ls~A~~~Lgry~e~ 74 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEA--------------------------FDHDGFDAFCHAGLSGALAGLGRYDEC 74 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS-----------------------------HHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhh--------------------------cccccHHHHHHHHHHHHHHhhccHHHH
Confidence 357788999999998877664433311 233455677788899999999999999
Q ss_pred HHHHHHHHHc-------CCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 109 VIEYSKAIDC-------DNSNPV----YYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 109 ~~~~~~al~~-------~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
+..-.++|.. +.+... +.+++|.++...|+.++|+..|+.+.++
T Consensus 75 L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 75 LQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 9888888864 333333 4568999999999999999999998764
No 301
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.41 E-value=0.019 Score=48.43 Aligned_cols=86 Identities=5% Similarity=0.030 Sum_probs=73.5
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy4130 78 NFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCN-RAASNNKLKNYKLALRDCQIAIKIDPHY 156 (314)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~ 156 (314)
..+.+..-+.++..|...+....+.+.|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++++|++
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 345566677888899999988889999999999999999999999999876 3445677899999999999999999999
Q ss_pred HHHHHHH
Q psy4130 157 AKAYGRM 163 (314)
Q Consensus 157 ~~~~~~l 163 (314)
+..|+..
T Consensus 176 p~iw~ey 182 (435)
T COG5191 176 PRIWIEY 182 (435)
T ss_pred chHHHHH
Confidence 9877643
No 302
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.37 E-value=0.68 Score=40.39 Aligned_cols=107 Identities=7% Similarity=-0.022 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ---MNDYKAALEAYT 181 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~ 181 (314)
.+.-+..|++||+.+|++..++..+-.+..+..+.++..+-+++++..+|++...|...-..... .-.+......|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45667889999999999999988888888888899999999999999999999888765444332 335777777777
Q ss_pred HHHhhCCC------------------CHHHHHHHHHHHHHhcccccCC
Q psy4130 182 KAAELDPN------------------DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 182 ~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+++..-.. -..+...+.......|-.+.|+
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Av 174 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAV 174 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHH
Confidence 77764211 1235566777788889998886
No 303
>KOG2300|consensus
Probab=95.31 E-value=0.51 Score=42.56 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-N--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY----- 156 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----- 156 (314)
....+..++.+|......+.|+.|...|..++++-.. + +.+..|+|..|...++-+.--+.++. +.|.+
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~s 439 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLS 439 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcch
Confidence 3445778889999999999999999999999987432 2 33557899999998876554444433 34442
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 157 -----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN-D-----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 157 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
..+++..|...+.++++.||...+.+.++...- + ...+..|+.+....|+..++.... .--...++
T Consensus 440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmv---rpamqlAk 516 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMV---RPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhcc---chHHHHHh
Confidence 256788899999999999999999999987621 1 235667788888888888875111 12224455
Q ss_pred hccCCh-HHH--HHHHHhhcC
Q psy4130 226 KVLSDP-SIQ--QVFGELFAN 243 (314)
Q Consensus 226 ~~~~~p-~~~--~~l~~~~~~ 243 (314)
+++.-| .+| ..+..++..
T Consensus 517 Ki~Di~vqLws~si~~~L~~a 537 (629)
T KOG2300|consen 517 KIPDIPVQLWSSSILTDLYQA 537 (629)
T ss_pred cCCCchHHHHHHHHHHHHHHH
Confidence 555544 233 344445444
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.29 E-value=0.053 Score=30.96 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
..++.++|.+|...|++++|+.++++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 357889999999999999999999999876
No 305
>KOG1258|consensus
Probab=95.27 E-value=0.95 Score=41.87 Aligned_cols=132 Identities=8% Similarity=-0.078 Sum_probs=113.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHH
Q psy4130 80 SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-PHYAK 158 (314)
Q Consensus 80 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 158 (314)
-....++.....|......-...|+++...-.|++++--.......|...+.-....|+..-|-..+.++.+.. |..+.
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~ 367 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPI 367 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcH
Confidence 34556677778888888888999999999999999999999999999999999999999999998888888875 66677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
....-+..-...|++..|...+++...--|+...+-.....+..+.|+.+.+.
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 77777788888999999999999999988998888777778888888888774
No 306
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.24 E-value=2 Score=38.13 Aligned_cols=94 Identities=14% Similarity=-0.024 Sum_probs=71.4
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CCC------------c---HHHHHHHH
Q psy4130 114 KAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------------DPH------------Y---AKAYGRMG 164 (314)
Q Consensus 114 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~lg 164 (314)
..+..+|.+.+.+..++.++..+|+++.|.+.+++|+-. ++. | -.+.++..
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 446789999999999999999999999999999998633 111 1 13566777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH-HHHhccc
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDPN-DPLYANNMQAA-MSNLNNS 207 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~-~~~~~~~ 207 (314)
..+.+.|.+.-|.++++-.+.++|. |+-.-...-.. ..+.+++
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y 155 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY 155 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH
Confidence 8888999999999999999999998 66543333333 3344444
No 307
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.22 E-value=1.7 Score=37.11 Aligned_cols=152 Identities=20% Similarity=0.102 Sum_probs=102.8
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc-----hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY-----KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
...+..+|+++|+.+.+..- ....+.++.+|.... ...+..|+........... ....+.+|..+..-.
T Consensus 89 v~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~ 162 (292)
T COG0790 89 VSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGL 162 (292)
T ss_pred ccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcCh
Confidence 35568899999997766544 445667777666532 1122333222211111100 233677777776531
Q ss_pred -------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-
Q psy4130 104 -------KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN- 171 (314)
Q Consensus 104 -------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g- 171 (314)
+...|+..|.++.... ++.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ +++..|
T Consensus 163 ~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 163 QALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 3347999999988775 78889999988865 3589999999999999887 88999999 777666
Q ss_pred --------------CHHHHHHHHHHHHhhCCCCH
Q psy4130 172 --------------DYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 172 --------------~~~~A~~~~~~al~~~p~~~ 191 (314)
+...|...+.++....+...
T Consensus 238 g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 271 (292)
T COG0790 238 GVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA 271 (292)
T ss_pred CchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence 77788888888777665543
No 308
>KOG2300|consensus
Probab=95.17 E-value=0.57 Score=42.26 Aligned_cols=123 Identities=19% Similarity=0.082 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhC---CCc---
Q psy4130 89 AEKYKNLGNTAMQQD--KPEQAVIEYSKAIDCDNSN---PVYYCNRAASN-NKLKNYKLALRDCQIAIKID---PHY--- 156 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~---p~~--- 156 (314)
+.++..+|..+...+ +...++.+++..+...|.+ +..+..+|.++ ...++++.|..++++|..+. |..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 346677777777777 7888888888777766553 34556666654 46788888888888888764 332
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcccccCC
Q psy4130 157 -AKAYGRMGLAYTQMN-DYKAALEAYTKAAELDPNDPL----YANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 157 -~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~A~ 211 (314)
..++..|+.+|.... .+..|...+++++++..+.+. ..+.|+.++.-..++..|.
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~ 147 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSAL 147 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHH
Confidence 256677788877766 777888888888888776653 3456666666667776664
No 309
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.13 E-value=0.14 Score=35.63 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 100 MQQDKPEQAVIEYSKAIDCDNSN---------PVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 100 ~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
.+.++|.+|++.+.+.+...... ..+..++|.++...|++++|+..+++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45566666666665555432111 223444555555555555555555555544
No 310
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.01 E-value=0.17 Score=36.16 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=64.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q psy4130 129 RAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMND-----------YKAALEAYTKAAELDPNDPLYA 194 (314)
Q Consensus 129 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 194 (314)
+|.-++..|++-+|++..+..+..++++. ..+..-|.++..+.. .-.++++|.++..+.|.....+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999998876 455566777765442 3468999999999999998888
Q ss_pred HHHHHHHHHhcccccCC
Q psy4130 195 NNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 195 ~~l~~~~~~~~~~~~A~ 211 (314)
+.++.-+.....|+++.
T Consensus 82 ~~la~~l~s~~~Ykk~v 98 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAV 98 (111)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 88777655555555553
No 311
>KOG1310|consensus
Probab=94.98 E-value=0.089 Score=47.70 Aligned_cols=77 Identities=18% Similarity=0.060 Sum_probs=68.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
....+..|+..|.+++...|.....+.+.+.++++.+ +.-.|+..+..+++++|....+++.|+.++..++++.+|.
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 3456788999999999999999999999999988754 6667788888899999999999999999999999999997
No 312
>KOG1914|consensus
Probab=94.96 E-value=3 Score=38.43 Aligned_cols=97 Identities=9% Similarity=0.020 Sum_probs=69.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130 79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK 158 (314)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 158 (314)
.+.++.+|.+..+|+.+-.-+..+ .+++..+.|++.+...|..+.+|.....-....++|+.....|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 344567788888888888777766 8899999999999999999999888888888888999999888888865322 34
Q ss_pred HHHH-HHHHHHHcCCHHHHH
Q psy4130 159 AYGR-MGLAYTQMNDYKAAL 177 (314)
Q Consensus 159 ~~~~-lg~~~~~~g~~~~A~ 177 (314)
.|.. |.-+-...++...+.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r 107 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYR 107 (656)
T ss_pred HHHHHHHHHHHHccCcchHH
Confidence 4332 233333344444433
No 313
>KOG4814|consensus
Probab=94.94 E-value=0.24 Score=45.98 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
++.+-|.-+++..+|..++++|...+.--|.+ ++....++.||..+.+.+.|.+++.+|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45567888899999999999999999876654 477889999999999999999999999999999988888877
Q ss_pred HHHHHhcccccCC
Q psy4130 199 AAMSNLNNSSSAS 211 (314)
Q Consensus 199 ~~~~~~~~~~~A~ 211 (314)
.+...-+..++|.
T Consensus 436 ~~~~~E~~Se~AL 448 (872)
T KOG4814|consen 436 QSFLAEDKSEEAL 448 (872)
T ss_pred HHHHHhcchHHHH
Confidence 7778888888886
No 314
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.90 E-value=0.13 Score=43.58 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 142 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
|+.+|.+|+.+.|.+...|..+|.++...|+.=.|+.+|-+++......+.+..+|..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34444445555555555555555544444444445444444444333334444444444444
No 315
>KOG2396|consensus
Probab=94.82 E-value=0.21 Score=45.10 Aligned_cols=95 Identities=11% Similarity=-0.056 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-cccCCCCCCCcc
Q psy4130 140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN-SSSASGSGGVFP 218 (314)
Q Consensus 140 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~ 218 (314)
..-+..|++|....+.++..|........+.+.+.+-...|.+++..+|++++.|...+.-....+. .+.|. .
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saR------a 161 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESAR------A 161 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHH------H
Confidence 4456788999999999999999988888888889999999999999999999999999988887776 66676 7
Q ss_pred hHHHHHHhccCChHHHHHHHHh
Q psy4130 219 GLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 219 ~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
-+...++..+.+|.+|.-+-.+
T Consensus 162 lflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 162 LFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred HHHHHhhcCCCChHHHHHHHHH
Confidence 7778888889999887654433
No 316
>KOG0529|consensus
Probab=94.77 E-value=0.5 Score=41.70 Aligned_cols=139 Identities=17% Similarity=0.046 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN----DYKAAL 177 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~ 177 (314)
-+++-+.+...+++.+|++..+|+.+..++.+.+ ++..=++.++++++.+|.+-.+|...=.+..... ...+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 5677788899999999999999999999999776 4788999999999999999877766555444322 367778
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCc-------chHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVF-------PGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
++..+++..++.|-.+|.....++..+-..+ +.+....- ....+++-.-+.|+..|....-++.+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~-~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKE-ADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhcccc-ccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 8999999999999999999988877543322 22110000 22223334445566677665555554
No 317
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.75 E-value=1.5 Score=34.12 Aligned_cols=114 Identities=14% Similarity=0.075 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCcHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN----PVYYCNRAASNNKLKNYKLALRDCQIAI-KIDPHYAKAYGRM 163 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l 163 (314)
.-+.+..|.+....|+-..|+..|.++-...|-- -.+...-+.++...|-|++-..-.+..- ..+|-...+.-.|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 3456777888888999999999998876544321 1234455667778888887666554422 2234455677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
|.+.++.|++.+|.++|..... +...+....+.+.+...
T Consensus 174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 9999999999999999988766 55555555666655443
No 318
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.68 E-value=0.23 Score=34.61 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=46.6
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 133 NNKLKNYKLALRDCQIAIKIDPH---------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 133 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..+.++|.+|++.+.+.+..... ...+..++|.++...|++++|+..+++++.+...
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45789999999888888876432 2367788999999999999999999999987543
No 319
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.65 E-value=0.63 Score=30.96 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHccCHHHHHHHHHHHHHh
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---AASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~~~~~~A~~~~~~al~~ 152 (314)
......|.-++...+.++|+..++++++..++.+..+..+ ..+|...|+|.+.+.+..+-+.+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888888888888777666554444 44566777777777766554443
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.40 E-value=0.54 Score=39.76 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
...++..++..+...++++.++..+++.+..+|.+-..|..+-.+|...|+...|+..|++.-.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3456777788888888888888888888888888888888888888888888888888877655
No 321
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.29 E-value=0.2 Score=27.94 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHHHcCC
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIE--YSKAIDCDN 120 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p 120 (314)
.++.+|..+..+|++++|+.. |+-+..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555 324444444
No 322
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.24 E-value=0.22 Score=42.30 Aligned_cols=62 Identities=18% Similarity=0.040 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
|+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++....-.+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999998765568888888888877
No 323
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.21 E-value=0.79 Score=37.38 Aligned_cols=78 Identities=17% Similarity=0.069 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130 87 IEAEKYKNLGNTAMQQDKP-------EQAVIEYSKAIDCDN--S----NPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 153 (314)
..+..+..+|..|...++- ..|++.|.+++.... . ...+.+.+|.++.+.|++++|+.+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4567788888888888874 455566666665432 2 24678899999999999999999999999865
Q ss_pred CCcH-HHHHHHH
Q psy4130 154 PHYA-KAYGRMG 164 (314)
Q Consensus 154 p~~~-~~~~~lg 164 (314)
..+. .....++
T Consensus 196 ~~s~~~~l~~~A 207 (214)
T PF09986_consen 196 KASKEPKLKDMA 207 (214)
T ss_pred CCCCcHHHHHHH
Confidence 4333 3444444
No 324
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.08 E-value=0.24 Score=27.62 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHccCHHHHHHH--HHHHHHhCC
Q psy4130 125 YYCNRAASNNKLKNYKLALRD--CQIAIKIDP 154 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~--~~~al~~~p 154 (314)
.++.+|..+..+|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 344555555555555555555 224444443
No 325
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.99 E-value=1.8 Score=38.87 Aligned_cols=134 Identities=16% Similarity=0.036 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
-.+...|.++.+++++.+|...|.+........+ +++.++-.-.+-+.+.+.=...+...-+..|..+......|
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~ 86 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKA 86 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4577889999999999999999999887654443 33444444444556666666666666677888888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDPND---------------PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS 229 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 229 (314)
...++.+++.+|++.+..-...-... ...-...+.++...|++.+++ ..+......++.
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR------~iLn~i~~~llk 160 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGR------AILNRIIERLLK 160 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHH------HHHHHHHHHHhh
Confidence 99999999999999887655441111 112245678899999999997 555555555555
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.96 E-value=6.1 Score=37.87 Aligned_cols=107 Identities=23% Similarity=0.076 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----
Q psy4130 87 IEAEKYKNLGNTAM-QQDKPEQAVIEYSKAIDCDNS--NP----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---- 155 (314)
Q Consensus 87 ~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---- 155 (314)
..+...+.+|.+++ ...+++.|..++++++.+... .. .+.+.++.++.+.+... |...++++++....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 45678999999998 688999999999999887643 22 23456788888888777 99999999987654
Q ss_pred cHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Q psy4130 156 YAKAYGRMG--LAYTQMNDYKAALEAYTKAAELD--PNDPLYA 194 (314)
Q Consensus 156 ~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 194 (314)
.....+++- ..+...+++..|++.++...... +.++.+.
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 223333333 22323479999999999988876 3555443
No 327
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.92 E-value=0.14 Score=28.93 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=11.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
+..+|.+-...++|++|+.+|++++.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 328
>KOG0985|consensus
Probab=93.72 E-value=2.8 Score=41.60 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C----------
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID--P---------- 154 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p---------- 154 (314)
+.+..|..+|.+..+.+...+|++.|-++ +++..|...-.+..+.|.|++-+.++.-|-+.- |
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAY 1176 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHH
Confidence 34678999999999999999999999665 667778888888888999999888887765542 1
Q ss_pred ----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 155 ----------------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 155 ----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.+. .-..|.-++..|.|+.|.-.|. +..-|..|+..+..+|++..|.
T Consensus 1177 Akt~rl~elE~fi~gpN~A~-i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIAGPNVAN-IQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HHhchHHHHHHHhcCCCchh-HHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHH
Confidence 1111 1233444444555555554443 2334566777777777777665
No 329
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.69 E-value=0.14 Score=28.92 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELD 187 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (314)
+.+..||.+-...++|++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999863
No 330
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.57 E-value=0.12 Score=26.34 Aligned_cols=17 Identities=18% Similarity=-0.146 Sum_probs=6.6
Q ss_pred HHHHHHHHccCHHHHHH
Q psy4130 128 NRAASNNKLKNYKLALR 144 (314)
Q Consensus 128 ~la~~~~~~~~~~~A~~ 144 (314)
.+|.++...|++++|..
T Consensus 6 ~la~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 6 ALARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 33333333333333333
No 331
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.46 E-value=0.85 Score=38.60 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
....++..++..+...++++.++..+++.+..+|.+-..|..+-..|...|+...|+..|++.-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345567788899999999999999999999999999999999999999999999999999988764
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.29 E-value=0.74 Score=36.32 Aligned_cols=89 Identities=13% Similarity=-0.059 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH----H
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPL----Y 193 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~ 193 (314)
..++..+|..|.+.|++++|+++|.++....... ...++.+-.+....+++.....++.++-.+-.. +.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3578899999999999999999999988865442 367788888899999999999999988775332 322 2
Q ss_pred HHHHHHHHHHhcccccCC
Q psy4130 194 ANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~ 211 (314)
...-|..+...+++.+|.
T Consensus 116 k~~~gL~~l~~r~f~~AA 133 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAA 133 (177)
T ss_pred HHHHHHHHHHhchHHHHH
Confidence 334455566677777775
No 333
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.12 E-value=0.14 Score=26.07 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
No 334
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.01 E-value=0.38 Score=38.37 Aligned_cols=78 Identities=8% Similarity=0.068 Sum_probs=57.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCC
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMND 172 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~ 172 (314)
+..+..-+.|...|-++- -.| +.+...+.+|..|. ..+.++++..+-+++++.+. +++.+..|+.++..+|+
T Consensus 116 ~Wsr~~d~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCcHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 444444456666665432 222 46778888887766 67899999999999998654 57899999999999999
Q ss_pred HHHHHH
Q psy4130 173 YKAALE 178 (314)
Q Consensus 173 ~~~A~~ 178 (314)
++.|.-
T Consensus 194 ~e~AYi 199 (203)
T PF11207_consen 194 YEQAYI 199 (203)
T ss_pred hhhhhh
Confidence 998853
No 335
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.92 E-value=0.86 Score=45.36 Aligned_cols=99 Identities=12% Similarity=0.108 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKL----K---NYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
...+++...+.|+.|+..|++.-.-.|... ++.+..|.....+ + .+++|+..|++.- -.|.-+--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 345677888999999999999999888754 5667777777654 2 4666666666543 345666777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
|.+|..+|++++-+++|.-|++..|..|.+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 889999999999999999999999988754
No 336
>KOG2422|consensus
Probab=92.79 E-value=3.8 Score=38.01 Aligned_cols=129 Identities=15% Similarity=0.132 Sum_probs=88.1
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
....+++|...|.-++...+ .+-. .......|.+.+.+..++.++..+|+.+-|
T Consensus 250 hs~sYeqaq~~F~~av~~~d---~n~v-----------------------~~lL~ssPYHvdsLLqva~~~r~qgD~e~a 303 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHD---PNNV-----------------------LILLISSPYHVDSLLQVADIFRFQGDREMA 303 (665)
T ss_pred cchHHHHHHHHHHHHHhhcC---Ccce-----------------------eeeeccCCcchhHHHHHHHHHHHhcchhhH
Confidence 35567788887777776655 2211 111334578889999999999999999999
Q ss_pred HHHHHHHHHc---------------------CCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHH
Q psy4130 109 VIEYSKAIDC---------------------DNSNPVYY---CNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRM 163 (314)
Q Consensus 109 ~~~~~~al~~---------------------~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 163 (314)
....+++|-. .|.+-..| +..-.-+.+.|.+..|..+++-.++++|. ++.+...+
T Consensus 304 adLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ 383 (665)
T KOG2422|consen 304 ADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYL 383 (665)
T ss_pred HHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHH
Confidence 8888887732 12232222 22233455679999999999999999998 87666555
Q ss_pred HHHH-HHcCCHHHHHHHHHHH
Q psy4130 164 GLAY-TQMNDYKAALEAYTKA 183 (314)
Q Consensus 164 g~~~-~~~g~~~~A~~~~~~a 183 (314)
-.+| ....+|+--+..++..
T Consensus 384 ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 384 IDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 5554 4566777766666654
No 337
>KOG0529|consensus
Probab=92.72 E-value=6.9 Score=34.83 Aligned_cols=149 Identities=11% Similarity=0.065 Sum_probs=101.4
Q ss_pred HHHHhcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 97 NTAMQQDKP-EQAVIEYSKAIDCDNSNPVYYCNRAASNNKL------------KNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 97 ~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
......+.+ .++++.=.+.+..+|+...+|..+=.++... .-+++-+.....+++.+|++..+|+.+
T Consensus 36 ~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR 115 (421)
T KOG0529|consen 36 QKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHR 115 (421)
T ss_pred HHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHH
Confidence 334445555 4556666677788888877776554444322 235667788889999999999999999
Q ss_pred HHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc-CCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 164 GLAYTQMND--YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS-ASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 164 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
..++.+.+. +..=++.++++++.+|.|-.+|...-.+......... +. +.+.--.+++...+.|-..|..-..+
T Consensus 116 ~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~---~El~ftt~~I~~nfSNYsaWhyRs~l 192 (421)
T KOG0529|consen 116 KWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEK---EELEFTTKLINDNFSNYSAWHYRSLL 192 (421)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccch---hHHHHHHHHHhccchhhhHHHHHHHH
Confidence 999998764 6888999999999999998888777666665544411 11 00022234445555666788887777
Q ss_pred hcCCCCCC
Q psy4130 241 FANPGQQA 248 (314)
Q Consensus 241 ~~~~~~~~ 248 (314)
+....+..
T Consensus 193 L~~l~~~~ 200 (421)
T KOG0529|consen 193 LSTLHPKE 200 (421)
T ss_pred HHHhcccc
Confidence 77655433
No 338
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.53 E-value=3.3 Score=41.38 Aligned_cols=126 Identities=17% Similarity=0.118 Sum_probs=84.3
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh-------c
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ-------Q 102 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------~ 102 (314)
-..++.|+..|++.-...|.-.+. .++.+..|.+... .
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~ 532 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEG-----------------------------------YEAQFRLGITLLEKASEQGDP 532 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccc-----------------------------------hHHHHHhhHHHHHHHHhcCCh
Confidence 345788888888877777733222 2244444444432 1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH-------HHHHHHHHHcCCHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY-------GRMGLAYTQMNDYKA 175 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~lg~~~~~~g~~~~ 175 (314)
..+++|+..|++. .-.|.-|--|...|.+|..+++|++-++++.-|++..|.++..- +++=.+.+. +-..
T Consensus 533 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 609 (932)
T PRK13184 533 RDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRRE 609 (932)
T ss_pred HHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHH
Confidence 3578888888764 44566677789999999999999999999999999999987543 333333332 2345
Q ss_pred HHHHHHHHHhhCCCCHHH
Q psy4130 176 ALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 176 A~~~~~~al~~~p~~~~~ 193 (314)
|....--++..-|.....
T Consensus 610 ~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 610 ALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHHHHHHHHhCcccccc
Confidence 556666677778875443
No 339
>KOG4151|consensus
Probab=92.33 E-value=0.97 Score=43.15 Aligned_cols=123 Identities=22% Similarity=0.293 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKL--KNYKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
.+.....-|+.++..+++..+-.-|..++.+-|. .+....+.+.|+..+ ++|.+++..+.-++...|....++.
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll 131 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALL 131 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHh
Confidence 3445667788999999999998888888888774 345677888887754 7999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
..+.+|...++++-|++.+.-....+|.+..+..-...++.-....+.+
T Consensus 132 ~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll~~~d~~ 180 (748)
T KOG4151|consen 132 KRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLLELKDLA 180 (748)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhcCCc
Confidence 9999999999999999998888889999866555444444444333333
No 340
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.24 E-value=0.48 Score=41.93 Aligned_cols=82 Identities=20% Similarity=0.180 Sum_probs=65.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCC--------C-----cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130 130 AASNNKLKNYKLALRDCQIAIKIDP--------H-----YA-----KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 130 a~~~~~~~~~~~A~~~~~~al~~~p--------~-----~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (314)
|..++++++|..|.--|..++++.. . +. .+-..|..||..+++.+-|+..-.+.+-++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4445566677777666666666532 1 11 2345789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCC
Q psy4130 192 LYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 192 ~~~~~l~~~~~~~~~~~~A~ 211 (314)
.-+..-+.|...+.+|.+|.
T Consensus 263 rnHLrqAavfR~LeRy~eAa 282 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAA 282 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986
No 341
>KOG1914|consensus
Probab=92.17 E-value=9.7 Score=35.25 Aligned_cols=80 Identities=16% Similarity=0.138 Sum_probs=36.5
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 132 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
.-.+..-...|...|.+|-+..-....++..-|.. |...++.+-|...|+-.++..++.+..-......+..+++-..+
T Consensus 375 ~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~ 454 (656)
T KOG1914|consen 375 FIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNA 454 (656)
T ss_pred HHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhH
Confidence 33333444445555555443322211222222221 33455555555555555555555555555555555555555555
Q ss_pred C
Q psy4130 211 S 211 (314)
Q Consensus 211 ~ 211 (314)
.
T Consensus 455 R 455 (656)
T KOG1914|consen 455 R 455 (656)
T ss_pred H
Confidence 3
No 342
>KOG2581|consensus
Probab=91.83 E-value=5.7 Score=35.28 Aligned_cols=127 Identities=16% Similarity=0.046 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DN-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKID---- 153 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---- 153 (314)
.+--.+..|+.+..++...++...-...+...+.. +. ..+...+.+=.+|...+.|+.|.....+..--+
T Consensus 164 lD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~sn 243 (493)
T KOG2581|consen 164 LDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASN 243 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcccccc
Confidence 34445677888888888888866555554444432 11 223445566678888899999998887776322
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcccccC
Q psy4130 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL------YANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 154 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A 210 (314)
...+...+.+|.+..-+++|..|.+++-.|+...|.+.. +...+..+..-+|++++-
T Consensus 244 ne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPer 306 (493)
T KOG2581|consen 244 NEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPER 306 (493)
T ss_pred HHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcch
Confidence 134577889999999999999999999999999997532 344455556667877753
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.59 E-value=1.6 Score=39.46 Aligned_cols=97 Identities=11% Similarity=0.054 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
...+.+....|+|+.+...+.-+-..-..-..+...+-.-...++++++|.....-.+.-.-.+++....-+.....+|-
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~ 406 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQL 406 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhH
Confidence 33445555555565555554333222111122222333344455566666655555555444455555444455555555
Q ss_pred HHHHHHHHHHHHhhCCC
Q psy4130 173 YKAALEAYTKAAELDPN 189 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~ 189 (314)
++++.-++++.+.++|.
T Consensus 407 ~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 407 FDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHHHHhccCCh
Confidence 66666666666666554
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.53 E-value=1.5 Score=35.56 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=31.8
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 133 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
+.+.+...+|+...+.-++.+|.+......+-.+++-.|+|++|...++-+-.+.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3344555555555555555555555555555555555555555555555555555544
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.33 E-value=0.93 Score=40.97 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=76.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 178 (314)
....|+.-.|-.-...+++..|..|......+.+...+|+|+.+.+.+.-+-..-..-..+...+-..+..+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34578999999999999999999999889999999999999999998877766544445556666677888999999998
Q ss_pred HHHHHHhhCCCCHHHH
Q psy4130 179 AYTKAAELDPNDPLYA 194 (314)
Q Consensus 179 ~~~~al~~~p~~~~~~ 194 (314)
.-.-.+.-.-+++++.
T Consensus 379 ~a~~~l~~eie~~ei~ 394 (831)
T PRK15180 379 TAEMMLSNEIEDEEVL 394 (831)
T ss_pred HHHHHhccccCChhhe
Confidence 8777766554555443
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.29 E-value=1 Score=38.10 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=24.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.+..|...|.+.+|++..++++.++|-+...+..+..++..+|+.-.+.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhh
Confidence 3444445555555555555555555555555555555555555544444
No 347
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.22 E-value=0.67 Score=24.39 Aligned_cols=28 Identities=21% Similarity=0.144 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130 172 DYKAALEAYTKAAELDPNDPLYANNMQA 199 (314)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 199 (314)
+++.|...|++++...|.++.+|..+..
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4555566666666666655555555443
No 348
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.10 E-value=4.1 Score=32.62 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcccccCC
Q psy4130 139 YKLALRDCQIAIKID-PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN----DPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 139 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
-++|...|-++-... -+++...+.||..|. ..+.++|+..+.+++++.+. ++++...|+.++..+++++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666665443322 246788888887766 67899999999999998654 5899999999999999999874
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.77 E-value=3 Score=27.82 Aligned_cols=56 Identities=11% Similarity=0.071 Sum_probs=41.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHcCCHHHHHHHHHH
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM---GLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l---g~~~~~~g~~~~A~~~~~~ 182 (314)
...|.=++...+..+|+..++++++..++....+..+ ..++...|+|++.+.+-.+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555677888999999999999988877655544 4567788888887766544
No 350
>KOG3807|consensus
Probab=90.13 E-value=6.6 Score=34.03 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----------------
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP----------------- 154 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p----------------- 154 (314)
-+.+-....+..+..+-++.-..+++++|..+.+|..++.- ..--..+|...+++|++...
T Consensus 187 e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~d 264 (556)
T KOG3807|consen 187 EDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHE 264 (556)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchh
Confidence 44455666777888888999999999999999988877642 23345566677776665411
Q ss_pred ------CcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 155 ------HYA--KAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 155 ------~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
.++ ..-.+|+.|..++|+..+|++.++...+-.|-
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPL 307 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccH
Confidence 111 33457899999999999999999988877663
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.78 E-value=22 Score=35.05 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY 156 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 156 (314)
..++......+.......++.+|.....++...-+. .+......|.+....+++++|++..+.++..-|.+
T Consensus 412 ~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 412 ASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred hhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 345666777788888999999999998887764332 12445567888889999999999999999987764
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHH--HHHHHHHHHHhc
Q psy4130 157 -----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN----DPLY--ANNMQAAMSNLN 205 (314)
Q Consensus 157 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~--~~~l~~~~~~~~ 205 (314)
..++..+|.+..-.|++++|..+...+.++... .-.+ ....+.++..+|
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 367888999999999999999999988887432 2223 333456666777
No 352
>KOG2041|consensus
Probab=89.42 E-value=2.7 Score=39.95 Aligned_cols=137 Identities=15% Similarity=0.208 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHH----------HHHHHHHHHccCHHHHHHHHHHHHH-----
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY----------CNRAASNNKLKNYKLALRDCQIAIK----- 151 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~~~~~~A~~~~~~al~----- 151 (314)
.+++.|..++......-.++.|...|-+.-.. |.- ... ...|.+-.--|+|++|.+.|-.+-+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLAi 767 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLAI 767 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhhH
Confidence 45778888888888777777776666443221 110 011 1233333334667777666543211
Q ss_pred -h-------------------CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130 152 -I-------------------DPH---YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208 (314)
Q Consensus 152 -~-------------------~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 208 (314)
+ +.+ -..++.++|..+..+-.|++|.++|.++-. ..++..|+..+..++
T Consensus 768 elr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~ 839 (1189)
T KOG2041|consen 768 ELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFG 839 (1189)
T ss_pred HHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhh
Confidence 1 111 236888899999999999999999886532 345667777777774
Q ss_pred cCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 209 SASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 209 ~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+ +...+..++.|.++...++.++..
T Consensus 840 ~----------LE~la~~Lpe~s~llp~~a~mf~s 864 (1189)
T KOG2041|consen 840 E----------LEVLARTLPEDSELLPVMADMFTS 864 (1189)
T ss_pred h----------HHHHHHhcCcccchHHHHHHHHHh
Confidence 4 357778888887776666666554
No 353
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.37 E-value=10 Score=37.22 Aligned_cols=65 Identities=18% Similarity=-0.022 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN-----PVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
.+...-..|.+....+++++|++..+.++..-|.+ ..++..+|.+..-.|++++|..+...+.+.
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 34445556667777777777777777777765543 235566777777777777777777776665
No 354
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.79 E-value=1.5 Score=22.91 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNR 129 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~l 129 (314)
+++.+...|++++...|.++.+|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 34555555555555555555555443
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.44 E-value=4.2 Score=34.54 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=38.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
....+..|...|.+.+|++..++++.++|-+...+..+-.++...|+--.+++.|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556666677777777777777777777777777777777777766666665553
No 356
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.22 E-value=1.1 Score=40.08 Aligned_cols=27 Identities=22% Similarity=0.531 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
..++.+|.+|..+++|.+|+..|...+
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555443
No 357
>KOG0890|consensus
Probab=88.11 E-value=8.8 Score=41.71 Aligned_cols=119 Identities=14% Similarity=-0.003 Sum_probs=93.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------ 156 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 156 (314)
..+....+.|...|.+....|.++.|....-+|.+.. -+.++..+|..+...|+...|+..+++.+..+-.+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 3455678899999999999999999999998888776 57788999999999999999999999999775222
Q ss_pred -----------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 157 -----------AKAYGRMGLAYTQMNDY--KAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 157 -----------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
..+...++......+++ .+-++.|..+.+..|....-++.+|.-+.+
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
Confidence 12445555666666664 355789999999999877777777755444
No 358
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.98 E-value=11 Score=29.50 Aligned_cols=120 Identities=10% Similarity=-0.023 Sum_probs=88.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN--PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY----AKAYGRMGL 165 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~ 165 (314)
-+..+.-+...+..++|+..|...-+..-.. .-+....|.+..+.|+-..|+..|..+-.-.|-- ..+..+-+.
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3444556677889999999998766654332 2345677888899999999999999987665431 245566677
Q ss_pred HHHHcCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 166 AYTQMNDYKAALEAYTKAA-ELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++...|.|++-..-.+..- .-+|-...+...|+....+.|++.+|.
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~ 187 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAK 187 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHH
Confidence 8889999998766555322 234545678899999999999999997
No 359
>KOG1839|consensus
Probab=87.90 E-value=2.5 Score=42.88 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--- 152 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--- 152 (314)
..+.....+..++..+...+++++|+..-.++.-. .|+....+.+++...+..++...|+..+.++..+
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L 1047 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL 1047 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc
Confidence 45667788889999999999999999887776643 2445567888888888888999999999988876
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhcccccC
Q psy4130 153 -----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--------DPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 153 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~A 210 (314)
.|.-+....+++.++...++++-|+.+.+.|++.+-. ....+..++.++...+++..|
T Consensus 1048 s~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839|consen 1048 SSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred ccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHH
Confidence 3555566778888888889999999999999885432 223444455555555444443
No 360
>KOG1839|consensus
Probab=87.77 E-value=2.3 Score=43.08 Aligned_cols=125 Identities=21% Similarity=0.226 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHH------HHHHH-HHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVI------EYSKA-IDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID------ 153 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------ 153 (314)
..+......|......+.+.+|.+ .+.+. -.+.|..+..|..++.++...+++++|+....++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 345556777878888888888877 44422 23578888999999999999999999999999887663
Q ss_pred --CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 154 --PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL--------DPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 154 --p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
|+....+.+++...+..+....|...+.++..+ .|.-.....++..++..+++++.|.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence 456688999999999999999999999888775 3444555678888888888888775
No 361
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.35 E-value=3.4 Score=31.18 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
+.....+...+..|++..|....+.++..+|++..+...++.++..+|...+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 33344444455555566666666666666666666655556655555544443
No 362
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=87.14 E-value=7 Score=28.83 Aligned_cols=44 Identities=18% Similarity=0.109 Sum_probs=26.5
Q ss_pred HHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 107 QAVIEYSKAID--CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 107 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
.+.+.|..... +.-..+..|...|..+...|++.+|...|+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 55555555544 234456666666777777777777777776654
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.10 E-value=1.6 Score=25.54 Aligned_cols=25 Identities=12% Similarity=-0.017 Sum_probs=15.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
+.+|.+|..+|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
No 364
>KOG2422|consensus
Probab=86.65 E-value=11 Score=35.22 Aligned_cols=94 Identities=20% Similarity=0.124 Sum_probs=70.6
Q ss_pred hcCCHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC---------
Q psy4130 101 QQDKPEQAVIEYSKAIDC------------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DP--------- 154 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p--------- 154 (314)
....|++|...|.-+... .|.+.+.+..++.+...+|+.+-|....++++-. .|
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 355688888888877764 3556778899999999999999988888887743 12
Q ss_pred -------CcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHH
Q psy4130 155 -------HYA---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPN-DPLYA 194 (314)
Q Consensus 155 -------~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 194 (314)
.+- .++++.-..+.+.|.+.-|.++++-.+.++|. +|-+.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 221 23444455667789999999999999999998 66443
No 365
>KOG1258|consensus
Probab=86.40 E-value=10 Score=35.42 Aligned_cols=126 Identities=9% Similarity=0.009 Sum_probs=97.0
Q ss_pred hcCCHHHHHHHHHHHHHc-----CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 101 QQDKPEQAVIEYSKAIDC-----DNS---NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
......+.+-.++..++. .|. +...|......-...|+++...-.+++++--.....+.|.+.+......|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 344455555556665542 222 234566666777789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 173 YKAALEAYTKAAEL-DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 173 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
..-|...+.++.++ .|..+.+...-+......|++..|. ..+.......|+.-+
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~------~~lq~i~~e~pg~v~ 401 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK------VILQRIESEYPGLVE 401 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH------HHHHHHHhhCCchhh
Confidence 99999999998886 4566777888888888899999997 666666666655433
No 366
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=86.17 E-value=4 Score=30.77 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK 137 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 137 (314)
.....+...+..|+|.-|....+.++..+|++..+...++.++..+|
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666555554
No 367
>KOG1464|consensus
Probab=85.93 E-value=19 Score=30.45 Aligned_cols=95 Identities=12% Similarity=0.019 Sum_probs=58.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCc------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHH
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHY------------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPL 192 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~ 192 (314)
..+|.+|+..++|.+-.+.+.+.-..+... .+.|-.--..|..+++-..-...|++++.+..- +|.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 358899999998888777777665543221 133444445666777777777788888876543 232
Q ss_pred HHHHH----HHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 193 YANNM----QAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 193 ~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
+.-.+ |..+.+-|++++|. ..+.++.+..
T Consensus 229 ImGvIRECGGKMHlreg~fe~Ah------TDFFEAFKNY 261 (440)
T KOG1464|consen 229 IMGVIRECGGKMHLREGEFEKAH------TDFFEAFKNY 261 (440)
T ss_pred HHhHHHHcCCccccccchHHHHH------hHHHHHHhcc
Confidence 22222 33455667777776 5555555544
No 368
>KOG2041|consensus
Probab=85.78 E-value=11 Score=36.15 Aligned_cols=87 Identities=20% Similarity=0.202 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.+.....++.++|..+.....|++|.++|.+.-. ..+...|+.....|++-. .....-|++...+-.+
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE----~la~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELE----VLARTLPEDSELLPVM 858 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHH----HHHHhcCcccchHHHH
Confidence 4455667899999999999999999999976522 234556666666665433 3333346666666666
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q psy4130 164 GLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~ 182 (314)
|..+...|--++|.++|-+
T Consensus 859 a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHhhchHHHHHHHHHh
Confidence 6666666666666665543
No 369
>KOG0546|consensus
Probab=85.73 E-value=0.87 Score=39.43 Aligned_cols=80 Identities=19% Similarity=0.166 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
....+++.+-++.+.+..|+..-..+++.++....+++.++..+....++++|++++..+....|.+....-.+..+-..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 34555888889999999999998888889999999999999999999999999999999999999988766555544433
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.37 E-value=2.3 Score=24.88 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
+.|+.+|...|+.+.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6789999999999999999999995
No 371
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=84.68 E-value=5.9 Score=28.93 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDC 118 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 118 (314)
-+..+|+..++.+++-.++-+|++|+.+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 3567888888999999999999998875
No 372
>KOG0985|consensus
Probab=84.68 E-value=29 Score=35.02 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------------CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDP-------------------------HYAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------------~~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
-|..++..+..+|+|..|+...++|-.... -+++-+-.+...|...|-|++-+..
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 456678888888888888888887654310 0122234556667778888888888
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
++.++.+..-+-.....|+.+|.+-
T Consensus 1302 ~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1302 LEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhhhchhHHHHHHHHHHHHHHHhc
Confidence 8888877766666666677766553
No 373
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=84.59 E-value=8.8 Score=28.28 Aligned_cols=26 Identities=23% Similarity=0.142 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQ 147 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~ 147 (314)
.+..|...|..+...|++.+|...|+
T Consensus 98 ~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 98 LALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34445555555666666666665554
No 374
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.35 E-value=21 Score=29.18 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=56.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130 97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA 157 (314)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 157 (314)
..+.+.+...+|+...+.-++..|.+......+-..+.-.|+|++|..-++-+-++.|.+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4567789999999999999999999999999999999999999999999999999999875
No 375
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=84.01 E-value=9.6 Score=25.21 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
+..+...|.-+-+.|++.+|+.+|+++++
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566666666666666666665554
No 376
>KOG3616|consensus
Probab=83.78 E-value=28 Score=33.74 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=57.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 100 MQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 100 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
....+|.+|+..++..-... .-...|-..+.-|...|+|+-|...|.++=.. ..--..|-+.|+|++|.+.
T Consensus 743 i~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHHH
Confidence 34455566655555433221 22234555667777778888887777654321 1112345567777777666
Q ss_pred HHHHHhhCCCC-HHHHHHHHHHHHHhcccccCC
Q psy4130 180 YTKAAELDPND-PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 180 ~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~ 211 (314)
-.++. .|.. ...|...+.-+...|++.+|.
T Consensus 814 a~e~~--~~e~t~~~yiakaedldehgkf~eae 844 (1636)
T KOG3616|consen 814 AEECH--GPEATISLYIAKAEDLDEHGKFAEAE 844 (1636)
T ss_pred HHHhc--CchhHHHHHHHhHHhHHhhcchhhhh
Confidence 55543 3333 234555566667788888875
No 377
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=83.72 E-value=13 Score=30.56 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhccccCC-----------CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH
Q psy4130 7 DIITSVITFLRKELLRDTL-----------NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES 60 (314)
Q Consensus 7 ~~~~~~~~~l~~~~~~~~~-----------~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~ 60 (314)
++.-.+..|+...+..+.- =..+.|+++.|++....+|+.+-.-|+.....+..
T Consensus 62 elLP~Y~p~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t 126 (230)
T PHA02537 62 DLLPKYLPWVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLAN 126 (230)
T ss_pred HHCcchHHHHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchH
Confidence 3445678888887654331 12348999999999999998775444543433333
No 378
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.55 E-value=13 Score=31.09 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
+...+|.-|+..|+|++|++.|+.+...... .......+-.|+...|+.+..+.+.-+
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445666667777777777777766544221 124455556666666666665554433
No 379
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=82.46 E-value=12 Score=32.50 Aligned_cols=94 Identities=17% Similarity=0.034 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
+|..-...|+-.....| ++.+-.|++.+.....-.+.++...+..... =..+..++...|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 44444444444444443 3455567777777766677777776665543 12344566778999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHH
Q psy4130 182 KAAELDPNDPLYANNMQ 198 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~ 198 (314)
+++.+.++..+..+...
T Consensus 390 rAi~La~~~aer~~l~~ 406 (415)
T COG4941 390 RAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHhcCChHHHHHHHH
Confidence 99999888766544443
No 380
>PF12854 PPR_1: PPR repeat
Probab=82.15 E-value=4.6 Score=21.87 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
...|..+-..+.+.|+.++|++.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44455555556666666666655543
No 381
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=81.52 E-value=5.5 Score=35.77 Aligned_cols=59 Identities=15% Similarity=0.049 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDN---------SNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
...+.+++.-.|||..|++.++.. .++. -+...++..|.+|+-+++|.+|+..|...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777899999999987642 3322 2345788999999999999999999999874
No 382
>KOG0686|consensus
Probab=81.47 E-value=13 Score=33.23 Aligned_cols=97 Identities=22% Similarity=0.141 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C----Cc
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---NPVYYCNRAASNNKLKNYKLALRDCQIAIKID----P----HY 156 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p----~~ 156 (314)
.-.++..+|..|..-|+++.|++.|-++-..+.. ....|.++-.+-..+++|..-..+..+|.+.- . -.
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 3567889999999999999999999996655433 23467777778888999999888888887652 0 12
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
+.....-|.+...+++|..|..+|-.+.
T Consensus 229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456667778888889999998887654
No 383
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.17 E-value=37 Score=30.99 Aligned_cols=121 Identities=9% Similarity=-0.049 Sum_probs=84.1
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
+.++|.+...|+.+-..+..++.+++-.+.|++...-.|-.+.+|...-.--...++|......|.+++...-. ...|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 55778889999999999999999999999999999988888888765544444568899999999999876433 44443
Q ss_pred HHHHHHHH-c----C----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 162 RMGLAYTQ-M----N----DYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 162 ~lg~~~~~-~----g----~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
..-..-.+ . | ..-+|.+..-.++-.+|.....|...+..+..
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~ 164 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEY 164 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 32221111 1 1 12233333333444678888888887776654
No 384
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=80.93 E-value=11 Score=31.42 Aligned_cols=62 Identities=6% Similarity=-0.050 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
......+|..|+..|+|++|+..|+.+...... ...+...+..|+...|+.+..+...-+.+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445668999999999999999999999765432 23466778889999999998888776554
No 385
>PF12854 PPR_1: PPR repeat
Probab=79.66 E-value=6 Score=21.40 Aligned_cols=26 Identities=15% Similarity=-0.047 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
...|..+-..|.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 44566666666667777777666654
No 386
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=79.52 E-value=11 Score=24.97 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al 150 (314)
...|.-+-+.|++.+|+.+|++++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334444445555555555554444
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=79.24 E-value=27 Score=31.30 Aligned_cols=63 Identities=10% Similarity=-0.074 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHH--HHccCHHHHHHHHHHHHHh
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP--VYYCNRAASN--NKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~--~~~~~~~~A~~~~~~al~~ 152 (314)
......+..++..++|..|...++..+..-|... ..+..++.+| -..-++.+|...++..+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456777888999999999999999988533333 3455554444 4678999999999988765
No 388
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.51 E-value=65 Score=30.97 Aligned_cols=86 Identities=10% Similarity=-0.106 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CC------CHHHHHHHHHHHHHccCHHHHHHHHH--------HHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---NS------NPVYYCNRAASNNKLKNYKLALRDCQ--------IAIK 151 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~ 151 (314)
.......+.+.+-.+++..|....+...... |. .+..++..|..+...|+.+.|+..|. .+..
T Consensus 361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~ 440 (608)
T PF10345_consen 361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANR 440 (608)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhcc
Confidence 3457778888889999999999988777653 22 46778999999999999999999998 4444
Q ss_pred hCCCcH---HHHHHHHHHHHHcCCHH
Q psy4130 152 IDPHYA---KAYGRMGLAYTQMNDYK 174 (314)
Q Consensus 152 ~~p~~~---~~~~~lg~~~~~~g~~~ 174 (314)
.++.+. -+..++..++...+...
T Consensus 441 ~~~~~El~ila~LNl~~I~~~~~~~~ 466 (608)
T PF10345_consen 441 KSKFRELYILAALNLAIILQYESSRD 466 (608)
T ss_pred CCcchHHHHHHHHHHHHHhHhhcccc
Confidence 444432 34456666666555433
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.12 E-value=11 Score=30.03 Aligned_cols=49 Identities=20% Similarity=0.267 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130 139 YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188 (314)
Q Consensus 139 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (314)
.+..++..++.++..| ++..+.+++.++..+|+.++|.....++..+.|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445556666666666 466777777888888888888888888877777
No 390
>KOG3783|consensus
Probab=77.46 E-value=62 Score=30.15 Aligned_cols=194 Identities=12% Similarity=0.044 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy4130 34 EVAVECLCKAYDIPDNIDPASNVDI--ESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIE 111 (314)
Q Consensus 34 ~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 111 (314)
+...+.+.......| +++-+.+ +.++...+..+.+......... .....-..-.++.+|.++..+.+|..|...
T Consensus 250 ~~~~~~Ll~~~~~~p---~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 250 EECEKALKKYRKRYP---KGALWLLMEARILSIKGNSEAAIDMESLSIP-IRMKQVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHHHHhHHHHHhCC---CCccHHHHHHHHHHHcccHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444445555555666 4434333 3344433333322221111111 333344556678888888888899999888
Q ss_pred HHHHHHcCCCCHHHHHHHH-HHHHHc--------cCHHHHHHHHHHHHH---h---------------------C-----
Q psy4130 112 YSKAIDCDNSNPVYYCNRA-ASNNKL--------KNYKLALRDCQIAIK---I---------------------D----- 153 (314)
Q Consensus 112 ~~~al~~~p~~~~~~~~la-~~~~~~--------~~~~~A~~~~~~al~---~---------------------~----- 153 (314)
+......+..+.-.|..++ .|++.. |+-++|-..++.... . .
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 8888777666555554444 444322 122222211111110 0 0
Q ss_pred ----------------------------------C-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC-
Q psy4130 154 ----------------------------------P-----HY-AKAYGRMGLAYTQMNDYKAALEAYTKAAEL---DPN- 189 (314)
Q Consensus 154 ----------------------------------p-----~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~- 189 (314)
| ++ .-.++.+|.++..+|+...|..+|..+++. ..+
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d 485 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTED 485 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccc
Confidence 0 00 122556789999999999999999888743 122
Q ss_pred ---CHHHHHHHHHHHHHhcc-cccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 190 ---DPLYANNMQAAMSNLNN-SSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 190 ---~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
-|-+++.+|.++..++. ..++ ..+..-++....|-++.+.+.
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~e~-------~~~L~kAr~~~~dY~lenRLh 531 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLKEA-------RALLLKAREYASDYELENRLH 531 (546)
T ss_pred cccccHHHHHHHHHHHhcccChHHH-------HHHHHHHHhhccccchhhHHH
Confidence 25688999999999888 6666 566666777666666555444
No 391
>KOG4014|consensus
Probab=77.16 E-value=35 Score=27.12 Aligned_cols=64 Identities=14% Similarity=-0.002 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----c--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-----K--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
.++...|++.|..+... +.+.+..++|.++..- + +.++|+.++.++-.++ +..+.++|+..+..
T Consensus 86 ~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred ccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 44667777777766553 4555566666665432 1 3567777777776553 44555555554443
No 392
>KOG2581|consensus
Probab=77.08 E-value=56 Score=29.41 Aligned_cols=105 Identities=12% Similarity=0.030 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY------YCNRAASNNKLKNYKLALRDCQIAIKIDPHYA 157 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 157 (314)
.+...++.++.+|.+..-+.+|..|.+++-+|+...|.+..+ ......+-.-+|++.+-....+..++ ..-
T Consensus 242 snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---ksL 318 (493)
T KOG2581|consen 242 SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---KSL 318 (493)
T ss_pred ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---HHH
Confidence 344778899999999999999999999999999999974321 11222233345665543333222221 123
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130 158 KAYGRMGLA--YTQMNDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 158 ~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~ 191 (314)
..|+.|..+ .-.+.+|.+-++-|..-+..+....
T Consensus 319 ~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~ 354 (493)
T KOG2581|consen 319 RPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYT 354 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcch
Confidence 456666544 2334556666666666666665543
No 393
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.08 E-value=8.7 Score=31.60 Aligned_cols=105 Identities=16% Similarity=0.077 Sum_probs=59.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCCH---------HHHHHHHHHHHHccCHH-HH-HHHHHHHHHh-C-CCc--HHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCD---NSNP---------VYYCNRAASNNKLKNYK-LA-LRDCQIAIKI-D-PHY--AKAY 160 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~---p~~~---------~~~~~la~~~~~~~~~~-~A-~~~~~~al~~-~-p~~--~~~~ 160 (314)
++..|+|+.|++..+.+|+.+ |+.. +-...-+......|+.- -. ...+.....- + |+. ++.|
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 457799999999999999975 3221 11222333334444421 11 1112222111 1 232 2455
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 161 GRMGLAYT---------QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 161 ~~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
-..|..+. ..++...|+..+++|+.++|+.. +...+..+...+
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G-VK~~i~~l~~~l 224 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG-VKKDIERLERRL 224 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHH
Confidence 56677663 45678899999999999999753 334444444444
No 394
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.58 E-value=66 Score=29.98 Aligned_cols=115 Identities=14% Similarity=0.065 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID------------- 153 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------- 153 (314)
++-.+++.++.+|... ..++-...+++.++.+-++...-..++..|.+ .+-.++...|.+++..-
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evW 174 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVW 174 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHH
Confidence 4456788888888887 56667788888888888877777777777766 77778888888776542
Q ss_pred -------CCcHHHHHH------------HH--------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 154 -------PHYAKAYGR------------MG--------LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 154 -------p~~~~~~~~------------lg--------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
|++.+..+. +| .-|....++.+|+..+.-.++++..+..+..++..-+..
T Consensus 175 eKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 175 EKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred HHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 222222211 11 223346789999999999999999988887777655443
No 395
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=76.36 E-value=6.6 Score=26.06 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=7.2
Q ss_pred HcCCHHHHHHHHHHHH
Q psy4130 169 QMNDYKAALEAYTKAA 184 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al 184 (314)
..|++++|+.+|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 18 QEGRYSEAVFYYKEAA 33 (76)
T ss_pred HccCHHHHHHHHHHHH
Confidence 3444444444444443
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=76.21 E-value=64 Score=29.66 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=51.2
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
.++++.+.++.+.. ++-|+.+.+....+..++...+..+.+.. .. . +++.-+. ...+.|+++.|.
T Consensus 274 ~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~---~~-----~---D~~~rFe---LAl~lg~L~~A~ 338 (443)
T PF04053_consen 274 RGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQ---FV-----T---DPDHRFE---LALQLGNLDIAL 338 (443)
T ss_dssp TT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHH---HS-----S----HHHHHH---HHHHCT-HHHHH
T ss_pred cCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHh---hc-----C---ChHHHhH---HHHhcCCHHHHH
Confidence 45666666665421 22243334444444445555554433332 00 1 1222332 345667777765
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
+..+ ..+++..|..+|.....+|+++-|..+|.++-
T Consensus 339 ~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 339 EIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 5432 23467789999999999999999998888754
No 397
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.61 E-value=39 Score=28.45 Aligned_cols=69 Identities=13% Similarity=-0.079 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------HHcCCCCHHHHHHHHHH-HHHccCHHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKA----------------IDCDNSNPVYYCNRAAS-NNKLKNYKLALRDC 146 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~ 146 (314)
....++..+..+|..+++.+++.+|..+|-.+ .+-.|...+.+..+|.+ |...++...|...+
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~ 164 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELF 164 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 44467889999999999999999998876211 12245566666666654 55678888777766
Q ss_pred HHHHHh
Q psy4130 147 QIAIKI 152 (314)
Q Consensus 147 ~~al~~ 152 (314)
..-++.
T Consensus 165 ~~f~~~ 170 (260)
T PF04190_consen 165 DTFTSK 170 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666555
No 398
>KOG3783|consensus
Probab=75.15 E-value=55 Score=30.46 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKI---DPH----YAKAYGRMGLAYTQMND-YKAALEAYTKAAELDPND 190 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~ 190 (314)
-+..+|.++..+|+...|..+|..++.. ... .|.++|.+|..+..++. ..++..++.+|-....++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 3567899999999999999999999843 222 35799999999999998 999999999998877554
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.28 E-value=17 Score=28.99 Aligned_cols=50 Identities=16% Similarity=0.024 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
.+..++..++.++..| ++..+.+++.++...|+.++|.+...++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455566677777777 5788999999999999999999999999999993
No 400
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=73.98 E-value=55 Score=27.88 Aligned_cols=111 Identities=15% Similarity=0.072 Sum_probs=67.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH---HHHccC----HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 97 NTAMQQDKPEQAVIEYSKAIDCDNS--NPVYYCNRAAS---NNKLKN----YKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~---~~~~~~----~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
..+...++|++=-..|.+....... ..+..+..+.. ...+.. ...-.+.++.=++..|++..++..+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 3456677777766666666543211 11111111111 111111 12356666777778888888887777776
Q ss_pred HHc----------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130 168 TQM----------------------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 168 ~~~----------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 207 (314)
... .-.+.|...+.++++++|....+...+-.+-...|+.
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 652 1346788899999999999988888887776666654
No 401
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=73.15 E-value=12 Score=24.11 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
..+...|..+-..|++++|+.+|.+++.
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555555666666666666666654
No 402
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=72.90 E-value=9 Score=25.64 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=7.4
Q ss_pred CCHHHHHHHHHHHHh
Q psy4130 171 NDYKAALEAYTKAAE 185 (314)
Q Consensus 171 g~~~~A~~~~~~al~ 185 (314)
|+.++|+.+|++++.
T Consensus 22 g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 22 GDKEQALAHYRKGLR 36 (79)
T ss_pred CCHHHHHHHHHHHHH
Confidence 455555555554443
No 403
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=72.62 E-value=78 Score=29.02 Aligned_cols=119 Identities=13% Similarity=-0.019 Sum_probs=81.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAAS-NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
|+..-+.-.+..-.+.|...|-++-+.--..+.+|..-|.+ |...|++.-|-..|+-.+...|+++......-..+...
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 33344444556667888888888765442334444443443 56789999999999999999999988777777778889
Q ss_pred CCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccccC
Q psy4130 171 NDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A 210 (314)
++-..|...|++++..-... ..+|..+-.-....|+...+
T Consensus 480 nde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 480 NDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred CcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 99999999999887653332 34444444444455555444
No 404
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=72.39 E-value=80 Score=29.04 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 171 (314)
....+..+.++|-++.|+..- .++...+.|| .+.|+.+.|.+..+ ..+++..|..||......|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence 444455555566555554332 2344444444 35677777766542 3347889999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 207 (314)
+++-|.++|.++-. +..|..++...|+.
T Consensus 362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 362 NIELAEECYQKAKD--------FSGLLLLYSSTGDR 389 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-H
T ss_pred CHHHHHHHHHhhcC--------ccccHHHHHHhCCH
Confidence 99999999987532 33455555666655
No 405
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.51 E-value=94 Score=29.56 Aligned_cols=79 Identities=14% Similarity=0.013 Sum_probs=47.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
+....+.+....+.-+......+......+..+...+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-..+|...+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 97 (578)
T PRK15490 20 QEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLIL 97 (578)
T ss_pred HHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHH
Confidence 3444555555555444433444445555666666667777777777777777766 55556666666666666666655
Q ss_pred H
Q psy4130 181 T 181 (314)
Q Consensus 181 ~ 181 (314)
.
T Consensus 98 ~ 98 (578)
T PRK15490 98 K 98 (578)
T ss_pred H
Confidence 5
No 406
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.31 E-value=7.8 Score=19.76 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=5.2
Q ss_pred HHHccCHHHHHHHH
Q psy4130 133 NNKLKNYKLALRDC 146 (314)
Q Consensus 133 ~~~~~~~~~A~~~~ 146 (314)
|.+.|++++|...+
T Consensus 10 ~~~~~~~~~a~~~~ 23 (31)
T PF01535_consen 10 YCKMGQFEEALEVF 23 (31)
T ss_pred HHccchHHHHHHHH
Confidence 33333333333333
No 407
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=71.23 E-value=28 Score=30.95 Aligned_cols=46 Identities=17% Similarity=-0.014 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
...-+|+..++.++..+|.+......+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3456777778888888888888888888888888888888887754
No 408
>PF13041 PPR_2: PPR repeat family
Probab=71.02 E-value=19 Score=21.20 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDC 118 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 118 (314)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444555555555555555555555543
No 409
>KOG0276|consensus
Probab=70.55 E-value=72 Score=30.35 Aligned_cols=48 Identities=15% Similarity=-0.004 Sum_probs=26.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
..+.|+++.|.....++ ++..=|..||.+....+++..|.+++.++-.
T Consensus 647 al~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34455555554433322 3444566666666666666666666666543
No 410
>KOG3616|consensus
Probab=70.06 E-value=15 Score=35.43 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-KAYGRMGLAY 167 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~ 167 (314)
...|-.++..|...|+|+-|.+.|.++=. ...--..|-+.|+|++|.+..+++.. |... ..|...+.-+
T Consensus 765 s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedl 834 (1636)
T KOG3616|consen 765 SGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDL 834 (1636)
T ss_pred cccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhH
Confidence 34566788889999999999999976522 12223556778899888877766543 3332 3444455555
Q ss_pred HHcCCHHHH-------------HHHHHHH------H----hhCCCC-HHHHHHHHHHHHHhcccccCC
Q psy4130 168 TQMNDYKAA-------------LEAYTKA------A----ELDPND-PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 168 ~~~g~~~~A-------------~~~~~~a------l----~~~p~~-~~~~~~l~~~~~~~~~~~~A~ 211 (314)
-..|+|.+| +..|.+. + +.+|+. .+.+..++.-+...|+...|.
T Consensus 835 dehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred HhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHH
Confidence 566665554 4444431 1 112322 345677777777778777775
No 411
>KOG3807|consensus
Probab=69.37 E-value=79 Score=27.72 Aligned_cols=108 Identities=19% Similarity=0.080 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP--VYYCNRAASNNKLKNYKLALRDCQIAIKID-PHYAKAYGRMGLAY 167 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 167 (314)
.-..++.|..+.|+..+|++.++...+..|-.. .++-|+-.++....-|.+....+-+.-.+. |+++...+.-+.+-
T Consensus 277 IKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK 356 (556)
T KOG3807|consen 277 IKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLK 356 (556)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHH
Confidence 445789999999999999999999888777332 345566666666665655544444433332 44433332222111
Q ss_pred H-------------HcC---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 168 T-------------QMN---DYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 168 ~-------------~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
. +.| --..|++.+.++++.+|.-+..+..+.
T Consensus 357 ~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 357 TRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred HHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 1 111 123588899999999998776655443
No 412
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.83 E-value=15 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
+..+...|.-+=+.|+|++|+.+|..+++
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33455556666666777777777766665
No 413
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=68.68 E-value=39 Score=24.04 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK 137 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 137 (314)
.......|...+..|++..|.+...++-+..+...-.+..-+.+-..+|
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 4445556666666677777777776665554333333333344444433
No 414
>KOG2561|consensus
Probab=68.34 E-value=53 Score=29.83 Aligned_cols=98 Identities=13% Similarity=0.062 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----------DNSNPVYYCNRAASNNKLKNY----------KLALRDCQ 147 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~ 147 (314)
...++..|.+++....|.+|+.++-.|=+. -.+.+..-..+-+||+.+++. ..|.+.|.
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 445778889999999999998877554332 223444445567888887653 22333333
Q ss_pred HHHH--------h-CCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 148 IAIK--------I-DPHYA------KAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 148 ~al~--------~-~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
++.- + .|..+ ..+..-|.+.+.+|+-++|.++++.+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3221 1 12222 23445699999999999999999987653
No 415
>KOG0276|consensus
Probab=67.75 E-value=65 Score=30.60 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKA 115 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~a 115 (314)
.-|..+|++....+++..|.+++.++
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34555555555555555555555544
No 416
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=67.51 E-value=50 Score=24.77 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=13.4
Q ss_pred hhcHHHHHHHHHHHcCCCC
Q psy4130 30 KEGIEVAVECLCKAYDIPD 48 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p 48 (314)
-|..++.++...+.+..++
T Consensus 15 dG~V~qGveii~k~v~Ssn 33 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSN 33 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-
T ss_pred hchHHHHHHHHHHHcCcCC
Confidence 4677888888888877666
No 417
>KOG4014|consensus
Probab=66.86 E-value=64 Score=25.71 Aligned_cols=111 Identities=21% Similarity=0.142 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 88 EAEKYKNLGNTAMQ-QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK-----LKNYKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 88 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
.++....+|..+.. +.+|++|...|..-..-+ ..+...+.+|.-++. .++...|+..+..+-. .+.+.+..
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 45678888887754 678999999988766544 345555666665542 3578899999998876 46788888
Q ss_pred HHHHHHHHc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 162 RMGLAYTQM-----N--DYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 162 ~lg~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
.+|.++..- + +.++|+.++.++-.++ +..+-++|...+..
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~ 156 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMG 156 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhc
Confidence 999887752 2 3789999999998765 45666666666554
No 418
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.80 E-value=15 Score=24.25 Aligned_cols=17 Identities=18% Similarity=0.063 Sum_probs=8.0
Q ss_pred HccCHHHHHHHHHHHHH
Q psy4130 135 KLKNYKLALRDCQIAIK 151 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al~ 151 (314)
..|+|++|+..|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34444444444444443
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.54 E-value=97 Score=27.81 Aligned_cols=88 Identities=16% Similarity=0.053 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--HHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA--KAYGRMGLA 166 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~ 166 (314)
....|..+....++.+|.+.++..+...-. ....+..+..+. ++...+........... ..+..++.+
T Consensus 172 ~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dL 244 (379)
T PF09670_consen 172 DLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADL 244 (379)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHH
Confidence 444566678899999999999998775321 112222222222 22222222222211100 022233332
Q ss_pred ------HHHcCCHHHHHHHHHHHHhh
Q psy4130 167 ------YTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 167 ------~~~~g~~~~A~~~~~~al~~ 186 (314)
-...|+|+.|+..+-+++++
T Consensus 245 l~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 245 LANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 23478999999988888875
No 420
>PF13041 PPR_2: PPR repeat family
Probab=65.91 E-value=25 Score=20.65 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=13.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
|..+-..|.+.|++++|.+.|++..+.
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 444444445555555555555554443
No 421
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.89 E-value=17 Score=18.85 Aligned_cols=19 Identities=16% Similarity=-0.104 Sum_probs=8.4
Q ss_pred HHHHHccCHHHHHHHHHHH
Q psy4130 131 ASNNKLKNYKLALRDCQIA 149 (314)
Q Consensus 131 ~~~~~~~~~~~A~~~~~~a 149 (314)
.+|.+.|++++|...|.+.
T Consensus 8 ~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 8 DGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444443
No 422
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.12 E-value=1.3e+02 Score=29.28 Aligned_cols=55 Identities=4% Similarity=-0.297 Sum_probs=36.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 131 ASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 131 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
.+....++++.+...+...-..........|.+|.++...|+.++|...|+++..
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3444666776666666554333334567777888887778888888888887643
No 423
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.78 E-value=1.1e+02 Score=29.74 Aligned_cols=52 Identities=6% Similarity=-0.185 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
....++++.....+...-..........|-+|.++...|+.++|...|+++.
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3355555555555444322222344455666666666666666666666653
No 424
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.72 E-value=47 Score=28.29 Aligned_cols=68 Identities=9% Similarity=-0.144 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLK----------------------NYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
-...++.-++.+|++..++..+|.++.... -.+.|+.++.+|+.++|+.+.++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 455566677788888888877777766542 3578999999999999999999998888
Q ss_pred HHHHcCCHHH
Q psy4130 166 AYTQMNDYKA 175 (314)
Q Consensus 166 ~~~~~g~~~~ 175 (314)
+-...|.+.-
T Consensus 142 ~s~~fgeP~W 151 (277)
T PF13226_consen 142 ISAYFGEPDW 151 (277)
T ss_pred HHhhcCCchH
Confidence 8888887653
No 425
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=64.63 E-value=18 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
.+...|..+-..|+|++|+.+|.+++.
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555666666665555554
No 426
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=63.94 E-value=49 Score=23.53 Aligned_cols=45 Identities=13% Similarity=-0.040 Sum_probs=25.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 171 (314)
...|.+....||+..|.+.+.++-+..+...-.+..-+.+...+|
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 445555666677777777777776554444444444455444444
No 427
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=63.93 E-value=56 Score=24.04 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=66.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH----Hhh
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPH---------------YAKAYGRMGLAYTQMNDYKAALEAYTKA----AEL 186 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~ 186 (314)
+..+|...++.+++-.++-+|++|+.+..+ .+....+||..+...|+.+=.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888888999999999999999877422 1245678999999999999999988754 445
Q ss_pred CCCCH-----HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 187 DPNDP-----LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 187 ~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
-|..+ .....+|.|... +.+..++. .||.+.+.+..+
T Consensus 84 iPQCp~~~C~afi~sLGCCk~A----------------Ll~F~KRH-PNP~iA~~vq~i 125 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCKKA----------------LLDFMKRH-PNPEIARLVQHI 125 (140)
T ss_pred ccCCCCcchHHHHHhhhccHHH----------------HHHHHHhC-CCHHHHHHHHhc
Confidence 55533 334555555332 23444433 467776666655
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.77 E-value=56 Score=27.08 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC--
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK-- 104 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-- 104 (314)
.+..+++++.++++.+++..+|.....-...++..|.+........|..............+......+-..-.+..+
T Consensus 11 aeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie~EL 90 (236)
T PF00244_consen 11 AEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIEDEL 90 (236)
T ss_dssp HHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHc----------cCHHHHHHHHHHHHHh-----CCCcH---HH
Q psy4130 105 ---PEQAVIEYSKAIDCDNSNPV----YYCNRAASNNKL----------KNYKLALRDCQIAIKI-----DPHYA---KA 159 (314)
Q Consensus 105 ---~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~----------~~~~~A~~~~~~al~~-----~p~~~---~~ 159 (314)
-.+.+...+..|--...+.. .+-..|..|... .-.+.|...|++|+.+ .|.+| ..
T Consensus 91 ~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl 170 (236)
T PF00244_consen 91 IDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGL 170 (236)
T ss_dssp HHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHH
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHh
Q psy4130 160 YGRMGLAYTQ-MNDYKAALEAYTKAAE 185 (314)
Q Consensus 160 ~~~lg~~~~~-~g~~~~A~~~~~~al~ 185 (314)
..+.+..++. +|+.++|+...++++.
T Consensus 171 ~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 171 ALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
No 429
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=63.41 E-value=70 Score=30.09 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC
Q psy4130 122 NPVYYCNRAASNNKL--KNYKLALRDCQIAIKI-----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL------DP 188 (314)
Q Consensus 122 ~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 188 (314)
+|.++.+||.+-.-. ..-..++..|.+||.. +-.+...|..+|-.+++.+++.+|+..+-.+-.. ..
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~r 355 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSR 355 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--G
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCc
Confidence 344445555443321 2234456666666654 2346678888999999999999999988877553 22
Q ss_pred CCHHHHHHHHHH
Q psy4130 189 NDPLYANNMQAA 200 (314)
Q Consensus 189 ~~~~~~~~l~~~ 200 (314)
++.++|..+-.+
T Consensus 356 eDeEiYKEfleI 367 (618)
T PF05053_consen 356 EDEEIYKEFLEI 367 (618)
T ss_dssp GGHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 345566555443
No 430
>KOG1497|consensus
Probab=63.10 E-value=81 Score=27.47 Aligned_cols=85 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHH--HHhhCCCCHHH
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-------KAYGRMGLAYTQMNDYKAALEAYTK--AAELDPNDPLY 193 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~--al~~~p~~~~~ 193 (314)
..+...+|.+|.+.++|..|.+.+.-.-.-..... ..+.++|.+|...++..+|..+..+ .+..+..|...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred HHHHHHHHHHhccc
Q psy4130 194 ANNMQAAMSNLNNS 207 (314)
Q Consensus 194 ~~~l~~~~~~~~~~ 207 (314)
...+..|+.+.-++
T Consensus 183 qie~kvc~ARvlD~ 196 (399)
T KOG1497|consen 183 QIEYKVCYARVLDY 196 (399)
T ss_pred HHHHHHHHHHHHHH
No 431
>KOG4279|consensus
Probab=61.79 E-value=1.2e+02 Score=29.77 Aligned_cols=112 Identities=13% Similarity=0.114 Sum_probs=59.5
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
+.+.+..+.|+++|+++++..|+.... ++++.+....+..-. ...+....-..++..+-+.|..+
T Consensus 297 ytDa~s~~~a~~WyrkaFeveP~~~sG--IN~atLL~aaG~~Fe-------------ns~Elq~IgmkLn~LlgrKG~le 361 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFEVEPLEYSG--INLATLLRAAGEHFE-------------NSLELQQIGMKLNSLLGRKGALE 361 (1226)
T ss_pred CcchhhHHHHHHHHHHHhccCchhhcc--ccHHHHHHHhhhhcc-------------chHHHHHHHHHHHHHhhccchHH
Confidence 446788999999999999999944322 233333333332200 00111223344455555666665
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
+-..+++-+ .|+.. -.-.++|.+|++..+..+++.|-....-..++.
T Consensus 362 klq~YWdV~---------~y~~a---sVLAnd~~kaiqAae~mfKLk~P~WYLkS~men 408 (1226)
T KOG4279|consen 362 KLQEYWDVA---------TYFEA---SVLANDYQKAIQAAEMMFKLKPPVWYLKSTMEN 408 (1226)
T ss_pred HHHHHHhHH---------Hhhhh---hhhccCHHHHHHHHHHHhccCCceehHHHHHHH
Confidence 544444322 12211 112467777777777777777654443333333
No 432
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=61.62 E-value=64 Score=27.48 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH------HHcCCHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL--KNYKLALRDCQIAIKIDPHYAKAYGRMGLAY------TQMNDYKAA 176 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~~A 176 (314)
++.-+.....+++-+|.+-..|..+-.++..- .++..-....++.+..||.+--.|...-.+. ..-.++...
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45667778899999999999999888887665 6788888899999999999876665443333 333344455
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 177 LEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
.++-...+..++.|..+|...-.....
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~ 196 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIER 196 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHH
Confidence 666677888999999998887544443
No 433
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.54 E-value=70 Score=24.04 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=21.3
Q ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 136 LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 136 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
.|+-++-.+.+....+-+..++..+..+|.+|.+.|+..+|-+.+++|-+
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33333333333333333334455555555566666655555555555544
No 434
>KOG0292|consensus
Probab=60.35 E-value=69 Score=31.91 Aligned_cols=31 Identities=26% Similarity=0.133 Sum_probs=23.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 131 ASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 131 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
.++++++++..|.....+.+++.|..+.+-.
T Consensus 1092 n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1092 NVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 4567888888888888888888877665543
No 435
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=60.08 E-value=26 Score=18.99 Aligned_cols=9 Identities=33% Similarity=0.508 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy4130 174 KAALEAYTK 182 (314)
Q Consensus 174 ~~A~~~~~~ 182 (314)
++|+.+|++
T Consensus 25 ~~A~~~~~~ 33 (39)
T PF08238_consen 25 EKAFKWYEK 33 (39)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHHHH
Confidence 333333333
No 436
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=59.93 E-value=27 Score=22.36 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=11.8
Q ss_pred HHHHHHHccCHHHHHHHHHHHHH
Q psy4130 129 RAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 129 la~~~~~~~~~~~A~~~~~~al~ 151 (314)
.|.-.-..|++++|+.+|.+++.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33334445566666655555543
No 437
>PF15469 Sec5: Exocyst complex component Sec5
Probab=59.91 E-value=83 Score=24.70 Aligned_cols=27 Identities=15% Similarity=0.059 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy4130 171 NDYKAALEAYTKAAELDPNDPLYANNM 197 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (314)
...++........++++|...++|..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 456667777777888888665666554
No 438
>KOG1463|consensus
Probab=59.75 E-value=42 Score=29.38 Aligned_cols=152 Identities=17% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcHHHHH
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDC------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHYAKAYG 161 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 161 (314)
..+...|+..++|.+|+......++- .+.-.+++..-..+|+...+..+|...+..|-.. .|.-..+-.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Q ss_pred HH--HHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcccccCC----------------------
Q psy4130 162 RM--GLAYTQMNDYKAALEAYTKAAEL------DPNDPLYANNMQAAMSNLNNSSSAS---------------------- 211 (314)
Q Consensus 162 ~l--g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~A~---------------------- 211 (314)
-+ |..+....+|.-|..+|-++++- +++-...+..+-.|...++..++-.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Q ss_pred ------CCCCCc-chHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 212 ------GSGGVF-PGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 212 ------~~~~~~-~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
.++..| ..+.++-..+..||-++..++.++.++
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~l 331 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNL 331 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHH
No 439
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=59.47 E-value=16 Score=24.11 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=5.6
Q ss_pred cCHHHHHHHHHHHH
Q psy4130 137 KNYKLALRDCQIAI 150 (314)
Q Consensus 137 ~~~~~A~~~~~~al 150 (314)
|+|++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444443333
No 440
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.57 E-value=26 Score=23.16 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 118 (314)
.+..+...|...=..|+|++|+.+|.++++.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3445666666667789999999999999875
No 441
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=56.75 E-value=27 Score=18.16 Aligned_cols=26 Identities=31% Similarity=0.181 Sum_probs=14.0
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130 177 LEAYTKAAELDPNDPLYANNMQAAMS 202 (314)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~l~~~~~ 202 (314)
++...+++..+|.+..+|..+-.+..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 34445555566666555555554443
No 442
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=56.72 E-value=78 Score=23.36 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=47.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 178 (314)
+...+.+...+.+++..+..++.++..+..+..+|.+. +..+.+..+.. ..+.-+. -..+..+...+-++++..
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~--~~~~yd~---~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN--KSNHYDI---EKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh--ccccCCH---HHHHHHHHHcCcHHHHHH
Confidence 34567888999999999988887788888888888754 44555666552 1111111 123334445555666665
Q ss_pred HHHH
Q psy4130 179 AYTK 182 (314)
Q Consensus 179 ~~~~ 182 (314)
.+.+
T Consensus 91 l~~k 94 (140)
T smart00299 91 LYKK 94 (140)
T ss_pred HHHh
Confidence 5544
No 443
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=56.52 E-value=1.6e+02 Score=26.88 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----C-H---HH--------HHHHHHHHH-HccC-----HHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS----N-P---VY--------YCNRAASNN-KLKN-----YKLALRD 145 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~-~---~~--------~~~la~~~~-~~~~-----~~~A~~~ 145 (314)
........|.-++..|+|.+|+..|+.+|..-|- + . .+ -|.+|.-.. ..+. .++....
T Consensus 203 ~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~ 282 (422)
T PF06957_consen 203 SLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN 282 (422)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 3344566788889999999999999999975221 1 1 11 122333221 1111 1222222
Q ss_pred HHHHHH-----hCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 146 CQIAIK-----IDPHYAKAYGRMGL-AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 146 ~~~al~-----~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
++-+.- +.|.+-..-.+.|. ..++.++|.-|-...++.|++.|....+-.....+.....+..+|
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa 353 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNPTDA 353 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BS
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 222222 22333322233333 456789999999999999999998765544443333333333334
No 444
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=56.16 E-value=35 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
.+...|.-.-..|++++|+.+|.+++.
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555556666666666655554
No 445
>KOG1118|consensus
Probab=55.75 E-value=1.4e+02 Score=25.84 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188 (314)
Q Consensus 143 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (314)
..-+-+.+--+.++..++...|..+...|+....+...-+--=++|
T Consensus 92 mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~Fldp 137 (366)
T KOG1118|consen 92 MIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDP 137 (366)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3334455555666667777777777777777666665554443443
No 446
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=55.60 E-value=29 Score=18.00 Aligned_cols=20 Identities=15% Similarity=-0.071 Sum_probs=8.5
Q ss_pred HHHHHHHccCHHHHHHHHHH
Q psy4130 129 RAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 129 la~~~~~~~~~~~A~~~~~~ 148 (314)
+-.++.+.|+++.|...++.
T Consensus 7 ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33344444444444444443
No 447
>KOG4279|consensus
Probab=55.54 E-value=1e+02 Score=30.23 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=55.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHH---HH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPH--------YAKAYGRMGLAY---TQ 169 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~---~~ 169 (314)
.+..+.|+.+|+++++..|.... =.|++.++...| +|+...+.-.-.++++.- ....|+..|..+ .-
T Consensus 300 a~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVL 378 (1226)
T KOG4279|consen 300 AESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVL 378 (1226)
T ss_pred hhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhh
Confidence 34567789999999999886432 355666666555 455555555555554321 112233333322 23
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPL 192 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~ 192 (314)
.+++.+|+..-+..+++.|-..-
T Consensus 379 And~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 379 ANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred ccCHHHHHHHHHHHhccCCceeh
Confidence 57899999999999999886543
No 448
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.48 E-value=28 Score=18.77 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 172 DYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
.++.|...|++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 355666666666666554 33444333
No 449
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=55.30 E-value=36 Score=22.30 Aligned_cols=26 Identities=27% Similarity=0.218 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
+...|..+-..|++++|+.+|.++++
T Consensus 11 li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 11 LISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444455555555555555544
No 450
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=55.06 E-value=1.7e+02 Score=26.67 Aligned_cols=97 Identities=10% Similarity=-0.126 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCH-------HHHHHHHHHHHHh----
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNY-------KLALRDCQIAIKI---- 152 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~---- 152 (314)
.....+|+.++-.++|+.|...|+.+.+-.-.+ +.+.-..|.+++..+.. +....+++.|+..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 457789999999999999999999887754322 22333455555555422 1333333333221
Q ss_pred -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 153 -------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 153 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
...-.......+.++...+.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1123356666777788888887777766665544
No 451
>KOG4521|consensus
Probab=54.33 E-value=2.8e+02 Score=28.98 Aligned_cols=187 Identities=13% Similarity=0.052 Sum_probs=108.1
Q ss_pred ccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHH-HHHHHHHHHHHH
Q psy4130 22 RDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIE-AEKYKNLGNTAM 100 (314)
Q Consensus 22 ~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 100 (314)
-.|..+...|...+|++||.+|..-.. +.- +.-..++......-.. ..-.+...+.. ..+|...-..+.
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~g---e~~-aL~~lv~~~~p~~~sv------~dG~t~s~e~t~lhYYlkv~rlle 994 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFG---EGN-ALRKLVYFLLPKRFSV------ADGKTPSEELTALHYYLKVVRLLE 994 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccc---cHH-HHHHHHHHhcCCCCch------hcCCCCCchHHHHHHHHHHHHHHH
Confidence 466778889999999999999987555 331 1112233322211111 11111111222 344445555666
Q ss_pred hcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMNDY 173 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~ 173 (314)
..+-.+.+++.-..|++.-|+ .+..+.+.=.-+..+|.+-+|.. ||-.+|+.. ..+..+-.++++.|++
T Consensus 995 ~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~----ai~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 995 EHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYK----AILRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHH----HHHcCCcHHHHHHHHHHHHHHHHhccch
Confidence 778888999998899885433 23345555555667788877764 444566643 4566777778887765
Q ss_pred H------------HHHH-HHHHHHhhCCCC-HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc
Q psy4130 174 K------------AALE-AYTKAAELDPND-PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL 228 (314)
Q Consensus 174 ~------------~A~~-~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 228 (314)
+ +-.. .++.+-+-.|-. +..+..|-..+...+++.+|. ..|.+.+..+-
T Consensus 1071 ~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaa------tvMYEyamrl~ 1133 (1480)
T KOG4521|consen 1071 EALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAA------TVMYEYAMRLE 1133 (1480)
T ss_pred HHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHH------HHHHHHHHHhc
Confidence 4 2333 344444545543 345555666677888888886 45555444443
No 452
>KOG0890|consensus
Probab=54.18 E-value=3.6e+02 Score=30.47 Aligned_cols=81 Identities=9% Similarity=-0.016 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHH---cC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 105 PEQAVIEYSKAID---CD----NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 105 ~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
..+-+-.+++++- .+ ..-...|...|.+....|+++-|-..+-.|.+.. -+.++...|..++..|+...|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4445555555543 23 3346799999999999999999999999999876 5788999999999999999999
Q ss_pred HHHHHHHhhC
Q psy4130 178 EAYTKAAELD 187 (314)
Q Consensus 178 ~~~~~al~~~ 187 (314)
..+++.+..+
T Consensus 1723 ~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1723 SVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHhh
Confidence 9999999664
No 453
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=53.38 E-value=38 Score=24.82 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP 123 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 123 (314)
..+|..+...|++++|..+|-+|+..+|.-.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 3577777777888888888888887777543
No 454
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=52.81 E-value=29 Score=30.97 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHhh
Q psy4130 139 YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN------------DYKAALEAYTKAAEL 186 (314)
Q Consensus 139 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~ 186 (314)
...|+.++++|.. .++|..|..+|.++..+| -|.+|...+.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4556666666554 234444555555444443 245666666666543
No 455
>KOG0889|consensus
Probab=51.89 E-value=4.8e+02 Score=31.00 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC----HHHHHHHHHHHHhhCCCCHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MND----YKAALEAYTKAAELDPNDPLYAN 195 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~----~~~A~~~~~~al~~~p~~~~~~~ 195 (314)
..+...|..+.+.|+.++|-+.|..|++++-.-+++|..=|..... ... -..|+.+|-+|....- +..+..
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~-~skaRk 2891 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYN-SSKARK 2891 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhcccc-chhhHH
Confidence 4455667777777777888888888877777777777666654433 111 2345566666655432 234556
Q ss_pred HHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 196 NMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
.++.++.-+. +++|. ..+.++..+...+-.+|
T Consensus 2892 ~iakvLwLls-~dda~------~~l~~~~~k~l~~ip~~ 2923 (3550)
T KOG0889|consen 2892 LIAKVLWLLS-FDDSL------GTLGDVFDKFLGEIPVW 2923 (3550)
T ss_pred HHHHHHHHHH-hcccc------chHHHHHHHhhccCCch
Confidence 6666655543 33443 44555666655554433
No 456
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.74 E-value=45 Score=21.75 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
+...|...-..|++++|+.+|..++.
T Consensus 9 l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 9 LIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555666666666665554
No 457
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=51.59 E-value=4.9 Score=37.81 Aligned_cols=59 Identities=17% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCC-CHHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAI--DCDNS-NPVYYCNRAASNNKLKNYKLALRDCQ 147 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al--~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~ 147 (314)
......-+..+...|++..|...+.+.- .+.|. ........|.+....|++++|+..+.
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~ 85 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLN 85 (536)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhc
Confidence 3344444455555555555555554433 11111 12233334444555555555555554
No 458
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=51.33 E-value=46 Score=19.18 Aligned_cols=32 Identities=16% Similarity=-0.084 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy4130 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA 176 (314)
Q Consensus 145 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 176 (314)
.|.++|-.+|++...+...+..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 35566666666666666666666666666444
No 459
>KOG1464|consensus
Probab=50.86 E-value=60 Score=27.57 Aligned_cols=51 Identities=18% Similarity=0.315 Sum_probs=43.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNP----VYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
+..+.++|+..|++++++.+... .++-.+-.+++++++|++-...|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34589999999999999988754 3566778899999999999999998885
No 460
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=50.48 E-value=58 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=13.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 128 NRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 128 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
.+|..+...|++++|..+|-+|+...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3455555555555555555555555443
No 461
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.22 E-value=43 Score=22.25 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=7.5
Q ss_pred HccCHHHHHHHHHHHH
Q psy4130 135 KLKNYKLALRDCQIAI 150 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al 150 (314)
..|+|++|+.+|..+|
T Consensus 18 ~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 18 QEGRFQEALVCYQEGI 33 (77)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3445555544444443
No 462
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=50.19 E-value=2.2e+02 Score=26.72 Aligned_cols=86 Identities=8% Similarity=-0.041 Sum_probs=64.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
++-..-.+.--.-...+.+... .+-.+++.++.||... ..++=...+++.++.+-+++..-..|+..|.. ++-..+.
T Consensus 75 ~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a 151 (711)
T COG1747 75 IFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAA 151 (711)
T ss_pred HhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHH
Confidence 3333334444444556666654 5667889999999988 66778889999999999998888888888777 7888888
Q ss_pred HHHHHHHhh
Q psy4130 178 EAYTKAAEL 186 (314)
Q Consensus 178 ~~~~~al~~ 186 (314)
.+|.+++..
T Consensus 152 ~~f~Ka~yr 160 (711)
T COG1747 152 EFFGKALYR 160 (711)
T ss_pred HHHHHHHHH
Confidence 888887753
No 463
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=49.11 E-value=58 Score=21.81 Aligned_cols=13 Identities=46% Similarity=0.355 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAID 117 (314)
Q Consensus 105 ~~~A~~~~~~al~ 117 (314)
|+.|..+..++|.
T Consensus 5 ~~~A~~~I~kaL~ 17 (79)
T cd02679 5 YKQAFEEISKALR 17 (79)
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444443
No 464
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.08 E-value=45 Score=26.43 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=25.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q psy4130 131 ASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKA 175 (314)
Q Consensus 131 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 175 (314)
.++.+.|.+++|.+.+++... +|++......|..+-.....+..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 455666777777777777666 66665555555555444444433
No 465
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=48.97 E-value=1.4e+02 Score=24.04 Aligned_cols=119 Identities=12% Similarity=0.042 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCCc-------
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAA-SNNKLKNYKLALRDCQIAIKIDPHY------- 156 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~p~~------- 156 (314)
...+...+..+=.....+|+|+.|-++|--.++..+-+......+|. ++...+.-....+.++......|..
T Consensus 37 r~~Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~ 116 (199)
T PF04090_consen 37 RKQHLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYY 116 (199)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchh
Confidence 34455666666677788999999999999999887777766666665 4555554444445555544332211
Q ss_pred ----------------HHHHHHHHHH--HHHcCC--------HHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHh
Q psy4130 157 ----------------AKAYGRMGLA--YTQMND--------YKAALEAYTKAAELDP--NDPLYANNMQAAMSNL 204 (314)
Q Consensus 157 ----------------~~~~~~lg~~--~~~~g~--------~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~ 204 (314)
...+ .+..+ +.-... +++.++-.++.+...| ++++.|+..|.|+.-.
T Consensus 117 ~~~~~~pvfrsGs~t~tp~y-~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~~ 191 (199)
T PF04090_consen 117 NRRIIAPVFRSGSRTHTPLY-AITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHLWI 191 (199)
T ss_pred hhhcccccccCCCcccchHH-HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence 1111 11111 111222 5566666666666666 5788899888887654
No 466
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=48.78 E-value=1e+02 Score=29.32 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=61.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 131 ASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 131 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
..+.+.+..+.+....+.-+.-........+..+..+...+..+.|-.+|++.+..+|+ ..++..+.-+.+.|-...|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 93 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDA 93 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHH
Confidence 34456667777887777777666667778888899999999999999999999999998 5566666666666655555
Q ss_pred C
Q psy4130 211 S 211 (314)
Q Consensus 211 ~ 211 (314)
.
T Consensus 94 ~ 94 (578)
T PRK15490 94 Q 94 (578)
T ss_pred H
Confidence 3
No 467
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=48.73 E-value=1.3e+02 Score=26.40 Aligned_cols=72 Identities=14% Similarity=0.031 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
+.+.+.....-...++...+-.... -..+..++..+|..+.++|+.++|...|++++.+.++..+..+.+..
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r 407 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR 407 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 4444555555566666666544432 12355677889999999999999999999999999988876665543
No 468
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=48.26 E-value=1.7e+02 Score=24.69 Aligned_cols=95 Identities=7% Similarity=-0.106 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhC------C
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYK-LALRDCQIAIKID------P 154 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~------p 154 (314)
.-.+.++.-+..+.+.+++.-|.+...-.++. .+.+.....++..++.....-+ +-.+..+++++-. -
T Consensus 8 eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~ 87 (260)
T PF04190_consen 8 EAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKF 87 (260)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT
T ss_pred HHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCC
Confidence 34456777777888888887776665444432 2344444566776666654322 2334444444322 2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 155 HYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.++..+..+|..+++.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 477899999999999999999988764
No 469
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=47.73 E-value=57 Score=28.97 Aligned_cols=46 Identities=22% Similarity=0.159 Sum_probs=42.1
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 137 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
...-+|+-.++.++..+|.+......+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999864
No 470
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=47.07 E-value=3.1e+02 Score=28.99 Aligned_cols=151 Identities=18% Similarity=0.140 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHH-------------------------
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS--N----PVYYCNRAASNNK------------------------- 135 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~------------------------- 135 (314)
...+....+|+.+...|.|.+|+..|..++..-.. + +.++-+++.|..-
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 45677889999999999999999999999975321 1 1222222222111
Q ss_pred --------------------------------------ccCHHHHHHHHHHHHHhC----CC--cHHHHHHHHHHHHHcC
Q psy4130 136 --------------------------------------LKNYKLALRDCQIAIKID----PH--YAKAYGRMGLAYTQMN 171 (314)
Q Consensus 136 --------------------------------------~~~~~~A~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g 171 (314)
...+++++.+|.++.... |. ..++..+++..+....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 113567888888886332 33 3467778888887777
Q ss_pred --------------------CHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 172 --------------------DYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 172 --------------------~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
.-.++...+.+++.+... ....+..++.+|..+|-..+.. --++.++.
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~A------FvlR~l~~ 473 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKA------FVLRELAV 473 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHH------HHHHHHHH
Confidence 778888888888876543 2457889999999999888875 55555555
Q ss_pred hccC-----ChHHHHHHHHhhcC
Q psy4130 226 KVLS-----DPSIQQVFGELFAN 243 (314)
Q Consensus 226 ~~~~-----~p~~~~~l~~~~~~ 243 (314)
.+.. .+.+..++..+...
T Consensus 474 ~~~~~l~~~~~s~~~lL~~~~~~ 496 (1185)
T PF08626_consen 474 QLVPGLIHWHQSYRSLLEELCKG 496 (1185)
T ss_pred HhccccCCcchHHHHHHHHHhcc
Confidence 5543 34445555555333
No 471
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.24 E-value=57 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
+...|...-..|+|++|+.+|.++++
T Consensus 9 lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 9 LVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444455555555555555554
No 472
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=44.49 E-value=55 Score=21.59 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 118 (314)
..+...|...-..|+|++|..+|..++..
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34455555556667777777777777653
No 473
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.01 E-value=2.1e+02 Score=24.69 Aligned_cols=28 Identities=7% Similarity=-0.088 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
++|.++|..|.+.++.+.+.+++.+.++
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 3445555555555555555544444433
No 474
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=43.54 E-value=39 Score=28.46 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=61.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----------HccCHHHHHHHHHHHHHhCCCc------HHHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN----------KLKNYKLALRDCQIAIKIDPHY------AKAYG 161 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~----------~~~~~~~A~~~~~~al~~~p~~------~~~~~ 161 (314)
.++..++.-.|+..|...+.-.|.+..+...-+.|.. ..-....|.+.+.+|+-..... ....+
T Consensus 4 ~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~ 83 (368)
T COG5091 4 ALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNF 83 (368)
T ss_pred chhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehh
Confidence 3455566667777777777777776433222222221 1234567888888888764332 24567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
+.+..++...+|+.|..+|.+|..+.-+
T Consensus 84 ~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 84 RYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 7788899999999999999999987544
No 475
>KOG1114|consensus
Probab=43.17 E-value=3.8e+02 Score=27.39 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=42.0
Q ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhccc
Q psy4130 144 RDCQIAIK-IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 144 ~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~ 207 (314)
+.|.+.++ ++-++.++|..-..-+..+|+|-.|.+++.++++-+.+ ..+.+..++.++..+|-.
T Consensus 1217 e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1217 ENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred HHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 34444443 34556666666666677889999999999999985443 244566677777666643
No 476
>KOG2114|consensus
Probab=43.05 E-value=2.6e+02 Score=27.95 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 118 (314)
.....+...|..++.+|+|++|...|-+.+..
T Consensus 366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 45677888999999999999999999988864
No 477
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.81 E-value=2.2e+02 Score=24.55 Aligned_cols=141 Identities=14% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCH-------------------HHHHHH
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNY-------------------KLALRD 145 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~-------------------~~A~~~ 145 (314)
..+++-..+.+++++|+..|.+.+.. -........+++.+|...|++ .+..+.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Q ss_pred HHHHHHhCCCcHHHHH---------------------------HHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Q psy4130 146 CQIAIKIDPHYAKAYG---------------------------RMGLAYTQMNDYKAALEAYTKAAEL------DPNDPL 192 (314)
Q Consensus 146 ~~~al~~~p~~~~~~~---------------------------~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 192 (314)
.+..++.-|..++.+- .+..+++..|+|.+|+....-.+.- .|+-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Q ss_pred HHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC----ChHHHHHHHHh
Q psy4130 193 YANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS----DPSIQQVFGEL 240 (314)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~p~~~~~l~~~ 240 (314)
++..-..+|....+..++ ..-..+++...+ -|.++..+.-+
T Consensus 167 vhllESKvyh~irnv~Ks-------kaSLTaArt~Ans~YCPpqlqa~lDL~ 211 (421)
T COG5159 167 VHLLESKVYHEIRNVSKS-------KASLTAARTLANSAYCPPQLQAQLDLL 211 (421)
T ss_pred hhhhhHHHHHHHHhhhhh-------hhHHHHHHHHhhccCCCHHHHHHHHHh
No 478
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=42.71 E-value=1.2e+02 Score=21.51 Aligned_cols=67 Identities=13% Similarity=-0.048 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 138 NYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 138 ~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
..++|..+.+- +...+. ...+.......+...|+|++|....+.. + .++.--.++.|..++|-.++.
T Consensus 20 cHqEA~tIAdw-L~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl~s~l 87 (115)
T TIGR02508 20 CHQEANTIADW-LHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGLGSAL 87 (115)
T ss_pred HHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhccHHHH
Confidence 34555444332 333333 2233344456678888888888765543 2 556666777777777766554
No 479
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=42.67 E-value=1.4e+02 Score=22.22 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAAS 132 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 132 (314)
.+.+..+-..++..-+.+.|...|++.++.+|++..++..+-..
T Consensus 76 ~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 76 SEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 34444444455555666666777777777777666655544433
No 480
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.03 E-value=2.3e+02 Score=24.50 Aligned_cols=104 Identities=10% Similarity=-0.062 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-- 157 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-- 157 (314)
....+++.++|..|.+.++.+.+.+...+.++..-. -.-....+|.+|..+.-.++.++.....++...+..
T Consensus 112 ~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 112 TEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 456789999999999999999999998887764321 122345678888888878888888888888765543
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 158 -KAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 158 -~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..-...|...+...+|.+|-..+...+.....
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 23334577777788899998888887765443
No 481
>KOG1538|consensus
Probab=41.96 E-value=1.1e+02 Score=29.48 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
..|+-.|..+....+|++|.+.|-+|
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 45666677777777777777777654
No 482
>KOG4563|consensus
Probab=41.70 E-value=97 Score=27.46 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHccCHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--------SNPVYYCNRAASNNKLKNYKLALRDC 146 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~ 146 (314)
......-+...|+-++..+++++|...|..|..+.. .+..+++..|..++..++.+..+-..
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344566788899999999999999999999998642 24567788888888888777665444
No 483
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.56 E-value=1.3e+02 Score=21.34 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA 159 (314)
Q Consensus 121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 159 (314)
--+.++..+|.+|...|+-+.|++.|+.--.+.|.+...
T Consensus 70 vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 70 VPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 345567777888888888888888877777777776543
No 484
>KOG0011|consensus
Probab=41.03 E-value=1.1e+02 Score=26.59 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=13.9
Q ss_pred HHHHHHHhhChHHHHHHHHHh
Q psy4130 267 QIAAQLEQRNPELVEQIFQQF 287 (314)
Q Consensus 267 ~~~~~~~~~~p~~~~~l~~~~ 287 (314)
.+.+++.+.+|.+++.+.+.-
T Consensus 241 ~~Lqqlg~~nP~L~q~Iq~nq 261 (340)
T KOG0011|consen 241 PLLQQLGKQNPQLLQLIQENQ 261 (340)
T ss_pred HHHHHHhhhCHHHHHHHHHHH
Confidence 456677777887777665543
No 485
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=40.49 E-value=76 Score=20.71 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=7.3
Q ss_pred ccCHHHHHHHHHHHH
Q psy4130 136 LKNYKLALRDCQIAI 150 (314)
Q Consensus 136 ~~~~~~A~~~~~~al 150 (314)
.|++++|+.+|..++
T Consensus 21 ~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 21 AGDYEEALELYKKAI 35 (77)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555544444
No 486
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=1.3e+02 Score=25.75 Aligned_cols=121 Identities=13% Similarity=0.015 Sum_probs=82.7
Q ss_pred ChhhHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH------HHccCHHHHHHHHHHHHHhC
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQ--DKPEQAVIEYSKAIDCDNSNPVYYCNRAASN------NKLKNYKLALRDCQIAIKID 153 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~~------~~~~~~~~A~~~~~~al~~~ 153 (314)
....|.....|.-.-.++... ..|..-....++.+..|+.+.-.|..+-.|. ....++..-.++-..+|..|
T Consensus 101 lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~td 180 (328)
T COG5536 101 LKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETD 180 (328)
T ss_pred HhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhC
Confidence 344566666666665555443 6677778888899999998877666554444 33445556677778889999
Q ss_pred CCcHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130 154 PHYAKAYGRM---GLAYTQMND------YKAALEAYTKAAELDPNDPLYANNMQAAMS 202 (314)
Q Consensus 154 p~~~~~~~~l---g~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 202 (314)
+.+..+|... -...+..|+ +++-+++.-.++-.+|++..+|..+-.+..
T Consensus 181 i~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 181 IYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred CCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 9999988877 333444554 455566677777789999888876655543
No 487
>KOG4151|consensus
Probab=40.34 E-value=51 Score=32.10 Aligned_cols=112 Identities=19% Similarity=0.159 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHH--HcCCHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY----AKAYGRMGLAYT--QMNDYKAALEA 179 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~--~~g~~~~A~~~ 179 (314)
+++.....+++... .-+..++..+++..|.--|..++.+-|.+ .....+.+.++. ..++|..++..
T Consensus 44 ~di~v~l~ra~~~~--------~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E 115 (748)
T KOG4151|consen 44 EDIEVFLSRALELK--------EEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPE 115 (748)
T ss_pred cchHHHHHHHHHHH--------hhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCc
Confidence 34555555555432 23556677888888888888888887742 344556666655 46799999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
..-++...|....++...+.+|..+++.+-|. ..+.-.....|.++
T Consensus 116 ~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~------rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 116 CELALESQPRISKALLKRARKYEALNKLDLAV------RDLRIVEKMDPSNV 161 (748)
T ss_pred hhhhhhccchHHHHHhhhhhHHHHHHHHHHHH------HHHHHHhcCCCCcc
Confidence 99999999999889988999999999887776 44434444445553
No 488
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.18 E-value=2.4e+02 Score=24.20 Aligned_cols=122 Identities=11% Similarity=0.107 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C--CCHHH---HHHHH-HHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD--------N--SNPVY---YCNRA-ASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p--~~~~~---~~~la-~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
...+-.-++.+.-..||..|++..+++++.- | ...+. ++.+| .++..+++|.+++.+.-+-...-.
T Consensus 35 ~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pE 114 (309)
T PF07163_consen 35 VSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPE 114 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcc
Confidence 3455566777788899999999999998742 1 11122 22223 367789999999999888776655
Q ss_pred CcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhcccccCC
Q psy4130 155 HYAKAYGRMGLA-YTQMNDYKAALEAYTKAAELDPNDP-------LYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 155 ~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~ 211 (314)
+-+.-...+..+ |.+.+++....+.-..- -.+|+|. .+-..+-.++.-+|.+.+|.
T Consensus 115 klPpkIleLCILLysKv~Ep~amlev~~~W-L~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAe 178 (309)
T PF07163_consen 115 KLPPKILELCILLYSKVQEPAAMLEVASAW-LQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAE 178 (309)
T ss_pred cCCHHHHHHHHHHHHHhcCHHHHHHHHHHH-HhCcccCCchhhHHHHHHHHHHHHhccccHHHHH
Confidence 555555666665 55778877766655444 4466652 24455566667789999995
No 489
>KOG0687|consensus
Probab=39.88 E-value=2.6e+02 Score=24.57 Aligned_cols=104 Identities=12% Similarity=0.032 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH--
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-- 157 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-- 157 (314)
..-.+++...|..|.+.|+-+.|.+.+++..+..-. -.-....+|..|....-..+.++-....++...++.
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
Confidence 445778999999999999999999998887764321 122345677777776666666766666776655433
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 158 -KAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 158 -~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..-..-|.......+|.+|-..|..++.....
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 22233466677788999999988888765543
No 490
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.17 E-value=99 Score=28.60 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
....++.-.+..|+|.-+.+.+++++-.+|++..+....+.++.++|-..|+.
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 34567777788999999999999999999999999999999999998777764
No 491
>KOG2758|consensus
Probab=38.66 E-value=2.7e+02 Score=24.42 Aligned_cols=154 Identities=12% Similarity=0.015 Sum_probs=88.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCc
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSK--AIDCDNS--NPVYYCNRAASNNKLKNYKLALRDCQIAIKI---DPHY 156 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~--al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~ 156 (314)
..|+..+.++..+...+.-|+|..|..++-. ++..+|+ +..+.++.-..-.-+.+|+-|++.+.+.-+. ++-.
T Consensus 124 f~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~f~ 203 (432)
T KOG2758|consen 124 FTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKSFS 203 (432)
T ss_pred CCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccccc
Confidence 4577788999999999999999999887543 3333332 3333333333344567899999888775443 1111
Q ss_pred H------------------------------------------------HHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Q psy4130 157 A------------------------------------------------KAYGRMGLAYTQM-NDYKAALEAYTKAAELD 187 (314)
Q Consensus 157 ~------------------------------------------------~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 187 (314)
. ..+..|+.+-.-. .+...+++.+-+++...
T Consensus 204 ~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIqqE 283 (432)
T KOG2758|consen 204 TSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQQE 283 (432)
T ss_pred cHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHHHh
Confidence 1 1111223332222 34455555555555543
Q ss_pred CC-CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 188 PN-DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 188 p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.- ..+.....-.|+.-.=++++|. ..+.+.-..+.+|+-+-..++.+..+
T Consensus 284 ~ysYkDPiteFl~clyvn~DFdgAq------~kl~eCeeVl~nDfFLva~l~~F~E~ 334 (432)
T KOG2758|consen 284 SYSYKDPITEFLECLYVNYDFDGAQ------KKLRECEEVLVNDFFLVALLDEFLEN 334 (432)
T ss_pred ccccCCcHHHHHHHHhhccchHHHH------HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 21 1122223334444445677776 77777777888888777666666444
No 492
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.31 E-value=99 Score=24.62 Aligned_cols=34 Identities=9% Similarity=0.018 Sum_probs=18.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAAS 132 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 132 (314)
++.+.|.|++|.+.+++... +|++......|..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 44556666666666666555 55555444444433
No 493
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=37.88 E-value=1.6e+02 Score=21.57 Aligned_cols=80 Identities=13% Similarity=0.030 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNP-----VYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKA 175 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~ 175 (314)
+.-..-...+++++....++. .-+..+-..|...-+ .+...|...... .-..+..|..-|..+...|++++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~ 117 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKK 117 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHH
Confidence 334444556666666543322 113333333444443 677777776664 56688999999999999999999
Q ss_pred HHHHHHHHH
Q psy4130 176 ALEAYTKAA 184 (314)
Q Consensus 176 A~~~~~~al 184 (314)
|.+.|++++
T Consensus 118 A~~I~~~Gi 126 (126)
T PF08311_consen 118 ADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999875
No 494
>KOG2114|consensus
Probab=37.73 E-value=1.4e+02 Score=29.66 Aligned_cols=56 Identities=7% Similarity=-0.076 Sum_probs=41.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNSN-PVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
-..+++..-|+-|+..-+. ...+++. ..++...|.-++..|++++|...|-+++..
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3456777888888877654 2333332 356777888999999999999999998864
No 495
>KOG0739|consensus
Probab=37.40 E-value=2.5e+02 Score=24.51 Aligned_cols=15 Identities=40% Similarity=0.330 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHcC
Q psy4130 105 PEQAVIEYSKAIDCD 119 (314)
Q Consensus 105 ~~~A~~~~~~al~~~ 119 (314)
.++||++..+|+..+
T Consensus 7 l~kaI~lv~kA~~eD 21 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDED 21 (439)
T ss_pred HHHHHHHHHHHhhhc
Confidence 356666666666543
No 496
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=37.28 E-value=1.1e+02 Score=28.37 Aligned_cols=47 Identities=17% Similarity=0.059 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN 138 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 138 (314)
...+|...+.+|+|.-+.+.+++++-.+|.+..+....+.++.++|-
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgY 501 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGY 501 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhh
Confidence 34455555555666666666666655566655555555555555553
No 497
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.14 E-value=3.1e+02 Score=24.66 Aligned_cols=64 Identities=9% Similarity=-0.200 Sum_probs=45.0
Q ss_pred hHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHH--HHccCHHHHHHHHHH
Q psy4130 85 VKIEAEKYKN--LGNTAMQQDKPEQAVIEYSKAIDCDNS-----NPVYYCNRAASN--NKLKNYKLALRDCQI 148 (314)
Q Consensus 85 ~~~~~~~~~~--~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~--~~~~~~~~A~~~~~~ 148 (314)
+|........ .+..+++.++|..|...|++++...+. ....+..++.+| ...=++++|.+.+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4444444333 555789999999999999999987542 233455555555 467789999999984
No 498
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.56 E-value=1.4e+02 Score=26.34 Aligned_cols=50 Identities=16% Similarity=0.082 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 140 KLALRDCQIAIKIDPH---YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 140 ~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
++....+...+..=|+ .+.+|.-++.+....|.+++.+..|++|+.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 3555566666665554 4567777777777778877788888887776654
No 499
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=36.48 E-value=2.2e+02 Score=26.94 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 89 AEKYKNLGNTAMQ--QDKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 89 ~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
+.++-.+|..--- ...-..++..|.+++.. +..+...|..+|-.|.+.++|.+|+..+..|-..
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677765543 23345668888888863 3445567888999999999999999998887653
No 500
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=36.47 E-value=2.8e+02 Score=23.98 Aligned_cols=124 Identities=8% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------CCCcH
Q psy4130 97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-------------------DPHYA 157 (314)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------------------~p~~~ 157 (314)
...+..+++.+.++..++.+..+|.-.+.++..+.++.++| ++.+.......+.. -+...
T Consensus 107 ~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T 185 (301)
T TIGR03362 107 QELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDET 185 (301)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHH
Q ss_pred HHHHHH----------------------------HHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcc
Q psy4130 158 KAYGRM----------------------------GLAYTQMNDYKAALEAYTKAAELDPN---DPLYANNMQAAMSNLNN 206 (314)
Q Consensus 158 ~~~~~l----------------------------g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~ 206 (314)
..|..- +..+...+..+.|+..++..+...++ .......++.++...|.
T Consensus 186 ~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~ 265 (301)
T TIGR03362 186 RAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGK 265 (301)
T ss_pred HHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCC
Q ss_pred cccCCCCCCCcchHHHHHHhc
Q psy4130 207 SSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~ 227 (314)
.+-|. ..+....+..
T Consensus 266 ~~lA~------~ll~~L~~~~ 280 (301)
T TIGR03362 266 AELAQ------QLYAALDQQI 280 (301)
T ss_pred HHHHH------HHHHHHHHHH
Done!