Query psy4130
Match_columns 314
No_of_seqs 397 out of 3222
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 17:42:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pl2_A Hypothetical conserved 99.9 1.1E-23 3.8E-28 172.1 19.2 174 26-244 14-198 (217)
2 4ga2_A E3 SUMO-protein ligase 99.9 6.8E-23 2.3E-27 157.6 15.6 146 23-206 3-149 (150)
3 4gco_A Protein STI-1; structur 99.9 2.1E-22 7.2E-27 150.1 17.0 119 83-201 7-125 (126)
4 3vtx_A MAMA; tetratricopeptide 99.9 2.3E-22 7.7E-27 159.5 15.8 163 24-230 12-174 (184)
5 4gyw_A UDP-N-acetylglucosamine 99.9 2.3E-22 8E-27 190.7 17.7 163 20-226 12-174 (723)
6 2h6f_A Protein farnesyltransfe 99.9 3.3E-22 1.1E-26 176.7 17.0 173 28-244 108-287 (382)
7 4gyw_A UDP-N-acetylglucosamine 99.9 3.8E-21 1.3E-25 182.5 22.0 156 84-245 4-159 (723)
8 1w3b_A UDP-N-acetylglucosamine 99.9 3.9E-22 1.3E-26 176.6 13.6 149 86-240 234-382 (388)
9 4ga2_A E3 SUMO-protein ligase 99.9 2.2E-22 7.5E-27 154.7 10.0 146 94-245 2-148 (150)
10 2q7f_A YRRB protein; TPR, prot 99.9 9.1E-22 3.1E-26 162.3 14.3 215 17-242 23-238 (243)
11 2pl2_A Hypothetical conserved 99.9 3.5E-21 1.2E-25 157.2 17.6 152 86-244 2-164 (217)
12 4i17_A Hypothetical protein; T 99.9 1.5E-21 5.1E-26 160.2 15.4 176 24-242 14-225 (228)
13 1w3b_A UDP-N-acetylglucosamine 99.9 6.6E-22 2.3E-26 175.1 14.2 208 24-242 74-282 (388)
14 3uq3_A Heat shock protein STI1 99.9 1.6E-21 5.3E-26 162.1 14.8 203 26-240 14-256 (258)
15 2h6f_A Protein farnesyltransfe 99.9 1.6E-20 5.5E-25 165.9 20.5 157 82-244 90-247 (382)
16 3vtx_A MAMA; tetratricopeptide 99.9 3.4E-20 1.2E-24 146.9 19.7 153 87-245 3-155 (184)
17 4eqf_A PEX5-related protein; a 99.9 1.9E-21 6.6E-26 170.6 12.1 128 96-229 184-313 (365)
18 4eqf_A PEX5-related protein; a 99.9 9.9E-22 3.4E-26 172.5 9.0 210 25-245 73-295 (365)
19 3hym_B Cell division cycle pro 99.8 8.2E-21 2.8E-25 163.5 13.5 202 29-241 102-314 (330)
20 1fch_A Peroxisomal targeting s 99.8 1.4E-20 4.9E-25 164.8 14.9 206 27-243 74-342 (368)
21 3u4t_A TPR repeat-containing p 99.8 3.6E-20 1.2E-24 155.6 16.7 210 26-243 12-233 (272)
22 3hym_B Cell division cycle pro 99.8 4.2E-20 1.4E-24 159.1 16.2 207 28-245 33-250 (330)
23 2ho1_A Type 4 fimbrial biogene 99.8 9.8E-21 3.3E-25 157.3 11.7 201 27-238 47-250 (252)
24 3gyz_A Chaperone protein IPGC; 99.8 9.8E-20 3.3E-24 139.7 16.2 113 79-191 26-138 (151)
25 4abn_A Tetratricopeptide repea 99.8 2.6E-20 8.7E-25 169.7 14.7 203 29-243 80-304 (474)
26 2vq2_A PILW, putative fimbrial 99.8 2.9E-20 9.8E-25 151.2 12.9 201 27-238 18-223 (225)
27 3qky_A Outer membrane assembly 99.8 1.5E-19 5.3E-24 151.4 16.1 173 25-238 23-236 (261)
28 3ieg_A DNAJ homolog subfamily 99.8 5E-20 1.7E-24 160.2 13.5 201 26-237 12-228 (359)
29 4i17_A Hypothetical protein; T 99.8 5.2E-19 1.8E-23 145.0 18.6 149 89-243 7-165 (228)
30 4abn_A Tetratricopeptide repea 99.8 1.1E-20 3.6E-25 172.2 8.3 183 23-211 108-312 (474)
31 1fch_A Peroxisomal targeting s 99.8 3.3E-19 1.1E-23 156.1 17.1 209 26-244 34-298 (368)
32 3upv_A Heat shock protein STI1 99.8 7.3E-19 2.5E-23 130.4 16.2 118 87-204 2-125 (126)
33 3as5_A MAMA; tetratricopeptide 99.8 7.5E-19 2.6E-23 138.2 16.7 162 27-232 18-179 (186)
34 3ieg_A DNAJ homolog subfamily 99.8 3.9E-19 1.3E-23 154.5 16.2 205 26-241 129-350 (359)
35 2y4t_A DNAJ homolog subfamily 99.8 2.6E-19 8.9E-24 161.2 15.4 206 24-240 150-372 (450)
36 1p5q_A FKBP52, FK506-binding p 99.8 5.4E-20 1.9E-24 160.2 10.5 180 29-211 77-284 (336)
37 2pzi_A Probable serine/threoni 99.8 1.5E-19 5.1E-24 171.7 13.9 150 87-243 431-580 (681)
38 2xpi_A Anaphase-promoting comp 99.8 3.6E-19 1.2E-23 166.0 15.8 206 26-242 382-595 (597)
39 4gco_A Protein STI-1; structur 99.8 2.7E-19 9.4E-24 133.1 12.0 122 114-241 4-125 (126)
40 2xcb_A PCRH, regulatory protei 99.8 6.9E-19 2.4E-23 133.6 14.5 127 79-205 8-134 (142)
41 2vgx_A Chaperone SYCD; alterna 99.8 1.5E-18 5.2E-23 132.8 15.6 126 82-207 14-139 (148)
42 3urz_A Uncharacterized protein 99.8 2.3E-19 7.7E-24 145.4 11.4 183 26-238 13-197 (208)
43 2y4t_A DNAJ homolog subfamily 99.8 2.7E-19 9.2E-24 161.1 12.6 201 26-237 35-251 (450)
44 3mkr_A Coatomer subunit epsilo 99.8 3.9E-18 1.3E-22 145.4 19.1 193 29-237 77-275 (291)
45 3cv0_A Peroxisome targeting si 99.8 7.4E-20 2.5E-24 157.3 8.2 122 102-229 151-272 (327)
46 3cv0_A Peroxisome targeting si 99.8 1.3E-19 4.5E-24 155.7 9.5 207 27-244 31-253 (327)
47 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.6E-17 5.4E-22 139.3 21.8 175 26-241 14-188 (275)
48 3u4t_A TPR repeat-containing p 99.8 1.8E-19 6E-24 151.3 9.5 208 25-243 45-267 (272)
49 4gcn_A Protein STI-1; structur 99.8 4.7E-18 1.6E-22 126.6 16.0 114 85-199 4-124 (127)
50 2vyi_A SGTA protein; chaperone 99.8 1.7E-17 5.8E-22 122.8 18.9 127 82-208 5-131 (131)
51 3sz7_A HSC70 cochaperone (SGT) 99.8 3.1E-18 1.1E-22 133.2 15.3 124 84-207 6-131 (164)
52 3gyz_A Chaperone protein IPGC; 99.8 1.2E-19 4.2E-24 139.2 6.6 117 109-231 22-138 (151)
53 3rkv_A Putative peptidylprolyl 99.8 3.2E-18 1.1E-22 132.8 14.8 125 87-211 9-152 (162)
54 2xpi_A Anaphase-promoting comp 99.8 3.3E-18 1.1E-22 159.5 16.8 181 26-211 314-495 (597)
55 2vsy_A XCC0866; transferase, g 99.8 4.2E-18 1.5E-22 158.5 17.1 157 30-230 2-161 (568)
56 2hr2_A Hypothetical protein; a 99.8 1.1E-18 3.6E-23 132.9 10.6 118 86-203 8-148 (159)
57 2q7f_A YRRB protein; TPR, prot 99.8 1E-17 3.5E-22 137.9 17.5 156 84-245 52-207 (243)
58 3urz_A Uncharacterized protein 99.8 5.4E-18 1.8E-22 137.3 15.5 122 88-209 3-140 (208)
59 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.5E-18 8.4E-23 141.0 12.9 151 26-211 13-204 (225)
60 3fp2_A TPR repeat-containing p 99.8 6.2E-19 2.1E-23 162.1 10.1 211 23-245 249-476 (537)
61 3uq3_A Heat shock protein STI1 99.8 1.2E-18 4.2E-23 144.5 10.8 177 25-201 46-257 (258)
62 2gw1_A Mitochondrial precursor 99.8 7.3E-19 2.5E-23 160.6 10.1 211 23-245 243-463 (514)
63 2gw1_A Mitochondrial precursor 99.8 4.4E-19 1.5E-23 162.0 7.3 205 25-240 278-492 (514)
64 2lni_A Stress-induced-phosphop 99.8 1.5E-17 5.1E-22 123.8 14.2 124 83-206 10-133 (133)
65 2fbn_A 70 kDa peptidylprolyl i 99.8 3.6E-17 1.2E-21 131.2 17.3 130 82-211 31-176 (198)
66 3qky_A Outer membrane assembly 99.8 2.4E-17 8.3E-22 137.9 16.8 154 84-243 10-197 (261)
67 2ho1_A Type 4 fimbrial biogene 99.8 1.8E-17 6.1E-22 137.5 15.8 154 84-243 66-221 (252)
68 2vgx_A Chaperone SYCD; alterna 99.8 2.5E-18 8.7E-23 131.5 9.2 124 109-238 7-130 (148)
69 2vq2_A PILW, putative fimbrial 99.8 6E-17 2.1E-21 131.4 17.7 156 82-243 35-194 (225)
70 1a17_A Serine/threonine protei 99.7 1.1E-16 3.8E-21 123.8 18.0 128 84-211 8-137 (166)
71 3fp2_A TPR repeat-containing p 99.7 3.3E-17 1.1E-21 150.5 17.5 195 29-234 214-415 (537)
72 3as5_A MAMA; tetratricopeptide 99.7 3.4E-17 1.1E-21 128.6 15.1 152 87-244 6-157 (186)
73 3q49_B STIP1 homology and U bo 99.7 2.4E-17 8E-22 123.8 12.8 124 86-209 6-134 (137)
74 2ond_A Cleavage stimulation fa 99.7 2E-17 6.8E-22 142.1 13.9 197 34-243 33-253 (308)
75 3mkr_A Coatomer subunit epsilo 99.7 9E-17 3.1E-21 137.0 17.6 148 86-244 98-247 (291)
76 2r5s_A Uncharacterized protein 99.7 1.5E-17 5E-22 131.0 11.4 132 87-225 38-172 (176)
77 1kt0_A FKBP51, 51 kDa FK506-bi 99.7 2.8E-17 9.7E-22 148.9 14.6 133 79-211 258-405 (457)
78 1elw_A TPR1-domain of HOP; HOP 99.7 2.9E-16 9.9E-21 113.9 17.3 115 88-202 3-117 (118)
79 1hxi_A PEX5, peroxisome target 99.7 4.3E-17 1.5E-21 120.2 12.8 102 91-192 19-120 (121)
80 2fo7_A Synthetic consensus TPR 99.7 2.5E-16 8.7E-21 116.8 16.4 131 90-226 2-132 (136)
81 1na0_A Designed protein CTPR3; 99.7 5.1E-16 1.8E-20 113.7 17.6 117 89-205 9-125 (125)
82 2xcb_A PCRH, regulatory protei 99.7 1.5E-17 5.2E-22 126.2 9.4 125 110-240 5-129 (142)
83 3qou_A Protein YBBN; thioredox 99.7 5E-17 1.7E-21 138.3 12.9 131 89-225 151-283 (287)
84 1qqe_A Vesicular transport pro 99.7 5.3E-17 1.8E-21 138.4 12.7 138 86-229 74-231 (292)
85 2e2e_A Formate-dependent nitri 99.7 1.3E-16 4.4E-21 125.4 13.4 134 26-197 19-155 (177)
86 2dba_A Smooth muscle cell asso 99.7 2.5E-16 8.5E-21 119.4 14.2 121 83-203 22-145 (148)
87 3qou_A Protein YBBN; thioredox 99.7 1.4E-16 4.8E-21 135.5 13.8 154 86-245 114-269 (287)
88 2e2e_A Formate-dependent nitri 99.7 8E-17 2.7E-21 126.6 11.4 136 99-240 20-158 (177)
89 2ond_A Cleavage stimulation fa 99.7 8.1E-17 2.8E-21 138.3 12.4 189 31-232 78-276 (308)
90 2yhc_A BAMD, UPF0169 lipoprote 99.7 2.7E-16 9.2E-21 128.8 14.7 151 88-244 3-197 (225)
91 1ouv_A Conserved hypothetical 99.7 1.2E-15 4.1E-20 128.3 18.6 194 27-243 16-230 (273)
92 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.3E-16 2.1E-20 129.5 16.8 197 23-232 49-250 (275)
93 1elr_A TPR2A-domain of HOP; HO 99.7 7.4E-16 2.5E-20 113.9 15.1 121 87-208 2-129 (131)
94 4g1t_A Interferon-induced prot 99.7 2.7E-16 9.1E-21 142.5 15.0 213 23-241 57-291 (472)
95 4g1t_A Interferon-induced prot 99.7 5.1E-17 1.7E-21 147.2 10.1 191 30-231 151-368 (472)
96 2xev_A YBGF; tetratricopeptide 99.7 1.2E-15 4.1E-20 113.1 15.8 117 90-206 3-125 (129)
97 1hh8_A P67PHOX, NCF-2, neutrop 99.7 5.1E-16 1.7E-20 125.4 14.8 144 88-240 5-166 (213)
98 2pzi_A Probable serine/threoni 99.7 4.6E-16 1.6E-20 147.7 15.6 149 87-245 392-548 (681)
99 3upv_A Heat shock protein STI1 99.7 4.8E-16 1.6E-20 115.1 12.3 116 120-241 1-122 (126)
100 1ihg_A Cyclophilin 40; ppiase 99.7 4.7E-16 1.6E-20 136.9 14.3 129 83-211 217-361 (370)
101 2r5s_A Uncharacterized protein 99.7 1.3E-16 4.6E-21 125.4 9.4 150 89-245 6-158 (176)
102 2if4_A ATFKBP42; FKBP-like, al 99.7 1.2E-16 4E-21 139.1 9.7 145 81-231 171-333 (338)
103 1hh8_A P67PHOX, NCF-2, neutrop 99.7 1.1E-15 3.8E-20 123.4 14.5 134 26-200 15-164 (213)
104 1zu2_A Mitochondrial import re 99.7 4.1E-16 1.4E-20 118.4 10.4 100 101-200 14-134 (158)
105 1ouv_A Conserved hypothetical 99.7 1.3E-15 4.5E-20 128.0 14.0 188 30-240 55-263 (273)
106 3nf1_A KLC 1, kinesin light ch 99.7 5.5E-17 1.9E-21 138.3 5.5 193 27-226 37-307 (311)
107 3dra_A Protein farnesyltransfe 99.7 6.1E-15 2.1E-19 125.7 17.6 213 11-243 34-270 (306)
108 1wao_1 Serine/threonine protei 99.6 2.8E-16 9.6E-21 143.0 9.7 125 87-211 4-130 (477)
109 3edt_B KLC 2, kinesin light ch 99.6 3.3E-16 1.1E-20 131.4 9.1 184 28-211 19-272 (283)
110 2fo7_A Synthetic consensus TPR 99.6 3.8E-15 1.3E-19 110.3 13.6 125 28-190 12-136 (136)
111 3k9i_A BH0479 protein; putativ 99.6 6.2E-16 2.1E-20 113.1 9.1 110 101-210 2-114 (117)
112 1qqe_A Vesicular transport pro 99.6 1.2E-15 4.2E-20 129.9 12.0 168 26-193 46-235 (292)
113 4a1s_A PINS, partner of inscut 99.6 7.8E-17 2.7E-21 143.3 4.6 214 25-244 56-316 (411)
114 3dss_A Geranylgeranyl transfer 99.6 5.6E-14 1.9E-18 120.5 22.2 164 105-278 90-270 (331)
115 2c2l_A CHIP, carboxy terminus 99.6 6.5E-16 2.2E-20 131.0 9.9 103 88-190 3-105 (281)
116 3edt_B KLC 2, kinesin light ch 99.6 2.2E-16 7.5E-21 132.4 6.4 163 28-226 12-198 (283)
117 1dce_A Protein (RAB geranylger 99.6 6E-15 2E-19 136.7 16.4 171 31-245 43-240 (567)
118 3ulq_A Response regulator aspa 99.6 1.7E-15 5.9E-20 133.8 12.3 182 24-243 110-315 (383)
119 2kck_A TPR repeat; tetratricop 99.6 1.6E-15 5.4E-20 109.0 9.5 104 88-191 5-111 (112)
120 2vsy_A XCC0866; transferase, g 99.6 6E-15 2.1E-19 137.2 16.0 137 102-244 2-138 (568)
121 4gcn_A Protein STI-1; structur 99.6 4.7E-15 1.6E-19 110.2 11.7 112 122-240 7-125 (127)
122 3sf4_A G-protein-signaling mod 99.6 2.7E-16 9.1E-21 139.1 5.0 215 23-243 93-359 (406)
123 3sf4_A G-protein-signaling mod 99.6 4.4E-16 1.5E-20 137.7 6.3 211 27-243 19-279 (406)
124 3sz7_A HSC70 cochaperone (SGT) 99.6 6.2E-15 2.1E-19 114.4 12.0 110 119-234 7-116 (164)
125 3q49_B STIP1 homology and U bo 99.6 1.3E-14 4.5E-19 108.6 13.4 118 117-240 3-125 (137)
126 4f3v_A ESX-1 secretion system 99.6 6.5E-16 2.2E-20 129.1 6.2 206 29-245 18-255 (282)
127 2ooe_A Cleavage stimulation fa 99.6 1E-14 3.5E-19 134.5 14.8 197 34-243 255-475 (530)
128 1p5q_A FKBP52, FK506-binding p 99.6 6.4E-16 2.2E-20 134.4 5.9 137 101-243 125-276 (336)
129 3ro2_A PINS homolog, G-protein 99.6 4.9E-16 1.7E-20 133.3 4.7 213 26-244 14-276 (338)
130 1hxi_A PEX5, peroxisome target 99.6 8.4E-15 2.9E-19 107.8 10.7 101 125-231 19-119 (121)
131 4a1s_A PINS, partner of inscut 99.6 4.3E-16 1.5E-20 138.5 4.3 215 24-244 93-356 (411)
132 3q15_A PSP28, response regulat 99.6 9.3E-15 3.2E-19 128.9 12.8 139 85-229 137-293 (378)
133 2fbn_A 70 kDa peptidylprolyl i 99.6 2.2E-15 7.4E-20 120.7 7.1 146 91-242 6-167 (198)
134 1a17_A Serine/threonine protei 99.6 2.9E-14 1E-18 110.0 13.3 123 26-186 22-146 (166)
135 3q7a_A Farnesyltransferase alp 99.6 4E-14 1.4E-18 122.0 15.1 169 31-243 68-254 (349)
136 2qfc_A PLCR protein; TPR, HTH, 99.6 8.5E-14 2.9E-18 118.4 16.9 152 27-210 85-255 (293)
137 3rjv_A Putative SEL1 repeat pr 99.6 2.9E-14 1E-18 115.6 12.6 185 35-240 4-209 (212)
138 2hr2_A Hypothetical protein; a 99.6 7.6E-15 2.6E-19 111.7 8.2 104 123-232 11-137 (159)
139 2ifu_A Gamma-SNAP; membrane fu 99.6 7.4E-15 2.5E-19 126.0 9.0 136 86-229 73-226 (307)
140 3ulq_A Response regulator aspa 99.5 9.7E-15 3.3E-19 128.9 9.2 123 85-207 180-319 (383)
141 1wao_1 Serine/threonine protei 99.5 1E-14 3.5E-19 132.7 9.5 134 19-190 8-154 (477)
142 1elw_A TPR1-domain of HOP; HOP 99.5 1E-13 3.5E-18 100.2 13.1 114 122-241 3-116 (118)
143 2dba_A Smooth muscle cell asso 99.5 1.1E-13 3.9E-18 104.5 13.9 120 118-243 23-145 (148)
144 2lni_A Stress-induced-phosphop 99.5 4.7E-14 1.6E-18 104.5 11.4 118 119-242 12-129 (133)
145 3ro2_A PINS homolog, G-protein 99.5 4.6E-15 1.6E-19 127.2 6.6 189 23-211 89-323 (338)
146 3u3w_A Transcriptional activat 99.5 7.2E-14 2.5E-18 118.9 13.8 159 29-225 87-265 (293)
147 2kck_A TPR repeat; tetratricop 99.5 2.1E-14 7.3E-19 103.0 8.8 108 118-231 1-111 (112)
148 3rkv_A Putative peptidylprolyl 99.5 4.6E-14 1.6E-18 109.1 11.3 112 123-240 11-141 (162)
149 3dra_A Protein farnesyltransfe 99.5 3.2E-13 1.1E-17 115.0 17.4 198 31-241 83-303 (306)
150 1zu2_A Mitochondrial import re 99.5 3.3E-14 1.1E-18 107.9 9.4 94 26-157 11-125 (158)
151 1na0_A Designed protein CTPR3; 99.5 1.9E-13 6.6E-18 99.7 13.2 118 118-241 3-121 (125)
152 3k9i_A BH0479 protein; putativ 99.5 6.7E-14 2.3E-18 102.1 10.5 102 30-166 3-104 (117)
153 2vyi_A SGTA protein; chaperone 99.5 1.1E-13 3.8E-18 101.9 11.8 120 118-243 7-126 (131)
154 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.2E-15 1.5E-19 134.6 4.2 137 101-243 246-397 (457)
155 3nf1_A KLC 1, kinesin light ch 99.5 5.7E-14 1.9E-18 119.5 10.9 159 79-243 17-207 (311)
156 2xev_A YBGF; tetratricopeptide 99.5 1.8E-13 6.1E-18 101.2 11.7 111 124-240 3-119 (129)
157 2kat_A Uncharacterized protein 99.5 1.9E-13 6.6E-18 99.2 11.6 102 106-207 2-105 (115)
158 3rjv_A Putative SEL1 repeat pr 99.5 8.2E-13 2.8E-17 107.0 15.4 145 87-243 16-174 (212)
159 2l6j_A TPR repeat-containing p 99.5 2.6E-14 9E-19 102.7 5.4 91 123-213 4-100 (111)
160 2l6j_A TPR repeat-containing p 99.5 6.1E-13 2.1E-17 95.4 12.5 95 88-182 3-103 (111)
161 2if4_A ATFKBP42; FKBP-like, al 99.5 3.6E-14 1.2E-18 123.4 6.5 149 23-192 185-334 (338)
162 3q15_A PSP28, response regulat 99.5 1.9E-13 6.4E-18 120.5 11.2 182 25-206 109-315 (378)
163 3ro3_A PINS homolog, G-protein 99.5 3.5E-13 1.2E-17 102.9 10.6 135 85-225 5-157 (164)
164 3dss_A Geranylgeranyl transfer 99.5 3.5E-12 1.2E-16 109.4 17.3 179 89-285 108-314 (331)
165 2xm6_A Protein corresponding t 99.5 2.7E-12 9.4E-17 117.1 17.6 189 30-239 236-448 (490)
166 1elr_A TPR2A-domain of HOP; HO 99.4 5.9E-13 2E-17 98.0 10.6 113 121-240 2-121 (131)
167 3e4b_A ALGK; tetratricopeptide 99.4 3.7E-13 1.3E-17 121.6 11.0 195 31-243 88-330 (452)
168 3gw4_A Uncharacterized protein 99.4 6.6E-13 2.3E-17 105.9 11.2 133 89-227 26-177 (203)
169 2ifu_A Gamma-SNAP; membrane fu 99.4 3.1E-13 1.1E-17 115.8 9.6 167 30-230 4-188 (307)
170 2ooe_A Cleavage stimulation fa 99.4 1.8E-12 6.2E-17 119.4 15.4 157 83-245 266-439 (530)
171 1na3_A Designed protein CTPR2; 99.4 1.8E-12 6.2E-17 89.4 11.8 82 88-169 8-89 (91)
172 1na3_A Designed protein CTPR2; 99.4 2.3E-12 8E-17 88.9 12.3 85 121-205 7-91 (91)
173 1ihg_A Cyclophilin 40; ppiase 99.4 5.3E-13 1.8E-17 117.4 10.7 135 23-179 229-363 (370)
174 2qfc_A PLCR protein; TPR, HTH, 99.4 2.7E-11 9.4E-16 102.8 21.1 155 85-245 71-250 (293)
175 2xm6_A Protein corresponding t 99.4 5.1E-12 1.7E-16 115.3 17.5 191 30-243 200-411 (490)
176 3q7a_A Farnesyltransferase alp 99.4 3.4E-11 1.2E-15 103.7 20.2 181 84-278 49-240 (349)
177 1dce_A Protein (RAB geranylger 99.4 2.6E-11 8.8E-16 112.3 20.4 145 95-245 34-192 (567)
178 2c2l_A CHIP, carboxy terminus 99.4 2.8E-12 9.6E-17 108.5 12.6 105 120-230 1-105 (281)
179 3u3w_A Transcriptional activat 99.4 2E-12 6.9E-17 109.9 11.0 127 28-186 126-266 (293)
180 4f3v_A ESX-1 secretion system 99.4 1.6E-11 5.5E-16 102.5 16.1 131 29-199 114-249 (282)
181 1hz4_A MALT regulatory protein 99.4 4.1E-12 1.4E-16 111.4 13.0 151 28-211 25-194 (373)
182 3e4b_A ALGK; tetratricopeptide 99.4 4.6E-12 1.6E-16 114.5 13.5 187 32-243 160-366 (452)
183 3ma5_A Tetratricopeptide repea 99.4 6.4E-12 2.2E-16 88.9 11.2 91 118-208 2-94 (100)
184 3ro3_A PINS homolog, G-protein 99.4 2.3E-12 7.8E-17 98.3 8.9 131 27-189 19-161 (164)
185 2kc7_A BFR218_protein; tetratr 99.4 1.9E-12 6.4E-17 91.1 7.5 92 92-191 3-95 (99)
186 1hz4_A MALT regulatory protein 99.3 4E-11 1.4E-15 105.1 13.9 196 26-227 62-283 (373)
187 2kat_A Uncharacterized protein 99.3 5.4E-11 1.9E-15 86.1 12.1 98 35-170 3-102 (115)
188 3ma5_A Tetratricopeptide repea 99.3 2.6E-11 9E-16 85.6 9.2 85 85-169 3-89 (100)
189 1klx_A Cysteine rich protein B 99.2 3.1E-10 1.1E-14 85.1 14.2 122 29-198 7-136 (138)
190 3n71_A Histone lysine methyltr 99.2 1.1E-10 3.9E-15 105.8 11.0 137 92-234 312-472 (490)
191 3mv2_B Coatomer subunit epsilo 99.2 1.5E-09 5E-14 91.9 17.0 185 36-234 85-290 (310)
192 3gw4_A Uncharacterized protein 99.2 1.8E-10 6.1E-15 91.6 10.6 123 99-227 2-137 (203)
193 1xi4_A Clathrin heavy chain; a 99.2 1.3E-09 4.4E-14 107.3 18.0 158 24-211 1056-1241(1630)
194 2kc7_A BFR218_protein; tetratr 99.2 4.6E-10 1.6E-14 78.6 11.2 78 126-203 3-83 (99)
195 4b4t_Q 26S proteasome regulato 99.1 4.1E-10 1.4E-14 100.5 13.2 162 29-211 16-195 (434)
196 3n71_A Histone lysine methyltr 99.1 2.5E-10 8.7E-15 103.5 10.1 131 27-187 319-465 (490)
197 3mv2_B Coatomer subunit epsilo 99.1 9.3E-10 3.2E-14 93.1 12.8 139 89-236 100-260 (310)
198 1pc2_A Mitochondria fission pr 99.1 1.6E-09 5.4E-14 81.3 12.2 101 105-205 14-119 (152)
199 1xi4_A Clathrin heavy chain; a 99.1 5.6E-09 1.9E-13 102.9 18.0 157 28-203 1145-1326(1630)
200 1b89_A Protein (clathrin heavy 99.1 3.2E-10 1.1E-14 100.2 8.0 184 26-243 70-253 (449)
201 1klx_A Cysteine rich protein B 99.0 2.5E-09 8.5E-14 80.2 11.7 118 103-236 9-134 (138)
202 3bee_A Putative YFRE protein; 99.0 2.8E-09 9.7E-14 73.9 10.0 72 119-190 2-76 (93)
203 3ly7_A Transcriptional activat 99.0 6.5E-09 2.2E-13 89.5 12.7 77 115-192 269-345 (372)
204 3ly7_A Transcriptional activat 98.9 9.6E-09 3.3E-13 88.5 12.8 144 90-241 197-353 (372)
205 2v5f_A Prolyl 4-hydroxylase su 98.9 1.4E-08 4.7E-13 72.1 11.0 75 90-164 6-87 (104)
206 2v5f_A Prolyl 4-hydroxylase su 98.9 2.4E-08 8.1E-13 70.8 12.2 84 122-205 4-94 (104)
207 4e6h_A MRNA 3'-END-processing 98.9 1.2E-08 4.1E-13 96.0 11.3 202 32-244 324-554 (679)
208 3bee_A Putative YFRE protein; 98.8 1.2E-08 4.2E-13 70.7 7.8 72 86-157 3-77 (93)
209 3qwp_A SET and MYND domain-con 98.8 3.4E-08 1.1E-12 88.2 11.7 112 93-204 291-426 (429)
210 4b4t_Q 26S proteasome regulato 98.8 1.8E-08 6.1E-13 89.8 9.9 123 89-211 95-236 (434)
211 3qww_A SET and MYND domain-con 98.8 5.6E-08 1.9E-12 86.7 12.8 99 96-194 305-424 (433)
212 4e6h_A MRNA 3'-END-processing 98.8 3E-08 1E-12 93.3 11.5 202 30-240 356-584 (679)
213 1b89_A Protein (clathrin heavy 98.8 1.3E-08 4.6E-13 89.8 8.2 151 25-203 102-253 (449)
214 1pc2_A Mitochondria fission pr 98.7 1.4E-07 4.6E-12 70.8 10.8 78 89-166 32-114 (152)
215 3u64_A Protein TP_0956; tetrat 98.7 1.2E-07 4E-12 78.6 10.3 174 34-211 49-260 (301)
216 3u64_A Protein TP_0956; tetrat 98.6 1.2E-07 4.2E-12 78.5 9.6 104 86-189 149-272 (301)
217 3qwp_A SET and MYND domain-con 98.6 1.8E-07 6.3E-12 83.5 11.2 111 29-169 299-425 (429)
218 3qww_A SET and MYND domain-con 98.6 2E-07 6.9E-12 83.1 10.9 101 29-159 310-423 (433)
219 1nzn_A CGI-135 protein, fissio 98.6 6.7E-07 2.3E-11 64.6 11.3 102 103-204 15-121 (126)
220 4asv_A Small glutamine-rich te 98.4 4.1E-07 1.4E-11 60.2 4.7 52 1-55 15-66 (92)
221 4gof_A Small glutamine-rich te 98.3 5.2E-07 1.8E-11 53.4 3.9 45 5-49 2-46 (52)
222 2lxb_A Small glutamine-rich te 98.2 2.1E-06 7E-11 54.9 5.1 47 2-48 4-50 (74)
223 2uy1_A Cleavage stimulation fa 98.2 8.3E-05 2.9E-09 67.6 16.6 143 89-243 213-396 (493)
224 2uy1_A Cleavage stimulation fa 98.1 0.00019 6.6E-09 65.2 18.2 172 29-211 225-404 (493)
225 4h7y_A Dual specificity protei 98.0 5.3E-05 1.8E-09 55.9 10.4 121 85-207 9-143 (161)
226 1y8m_A FIS1; mitochondria, unk 98.0 0.00033 1.1E-08 51.4 14.3 85 120-204 36-124 (144)
227 3ffl_A Anaphase-promoting comp 98.0 4.5E-05 1.5E-09 57.5 9.9 113 88-201 19-165 (167)
228 3o48_A Mitochondria fission 1 98.0 0.00011 3.9E-09 53.1 11.5 84 121-204 38-125 (134)
229 1nzn_A CGI-135 protein, fissio 97.9 5.5E-05 1.9E-09 54.6 8.5 78 89-166 35-117 (126)
230 3ffl_A Anaphase-promoting comp 97.7 0.00019 6.6E-09 54.1 9.1 108 125-242 22-166 (167)
231 3o48_A Mitochondria fission 1 97.7 0.00029 9.9E-09 51.0 9.6 79 89-167 40-122 (134)
232 4h7y_A Dual specificity protei 97.7 0.00039 1.3E-08 51.3 9.4 120 117-243 7-141 (161)
233 1y8m_A FIS1; mitochondria, unk 97.6 0.00079 2.7E-08 49.3 10.9 79 88-166 38-120 (144)
234 4gns_B Protein CSD3, chitin bi 97.5 0.0011 3.9E-08 62.6 12.3 59 125-183 339-397 (754)
235 4g26_A Pentatricopeptide repea 97.5 0.024 8.1E-07 51.5 20.8 114 89-203 105-222 (501)
236 4g26_A Pentatricopeptide repea 97.1 0.06 2.1E-06 48.8 19.5 146 92-243 29-187 (501)
237 2ff4_A Probable regulatory pro 97.1 0.017 5.7E-07 50.6 14.9 141 84-243 110-257 (388)
238 1ya0_A SMG-7 transcript varian 96.8 0.01 3.6E-07 53.5 11.3 80 125-204 154-233 (497)
239 1ya0_A SMG-7 transcript varian 96.6 0.018 6.1E-07 52.0 11.0 80 90-169 153-232 (497)
240 3kae_A CDC27, possible protein 96.5 0.063 2.2E-06 40.5 11.5 99 90-193 34-150 (242)
241 4gns_B Protein CSD3, chitin bi 96.4 0.016 5.4E-07 54.9 10.1 109 102-211 261-391 (754)
242 1zbp_A Hypothetical protein VP 96.4 0.093 3.2E-06 42.9 13.0 62 98-159 6-67 (273)
243 2ff4_A Probable regulatory pro 95.8 0.11 3.8E-06 45.3 11.9 48 193-246 173-220 (388)
244 3txn_A 26S proteasome regulato 95.6 0.2 6.8E-06 43.7 12.5 116 92-207 102-236 (394)
245 1zbp_A Hypothetical protein VP 95.3 0.099 3.4E-06 42.7 8.8 62 132-193 6-67 (273)
246 3mkq_A Coatomer beta'-subunit; 95.0 0.23 7.8E-06 47.4 12.2 100 99-211 662-769 (814)
247 4b4t_R RPN7, 26S proteasome re 94.8 0.21 7.1E-06 44.2 10.5 99 91-189 133-240 (429)
248 4b4t_P 26S proteasome regulato 94.7 2.1 7.2E-05 37.9 17.2 102 85-186 133-247 (445)
249 4fhn_B Nucleoporin NUP120; pro 94.7 0.42 1.4E-05 47.9 13.6 113 95-211 818-958 (1139)
250 3spa_A Mtrpol, DNA-directed RN 94.1 1.1 3.8E-05 43.9 14.1 99 89-187 127-231 (1134)
251 3kae_A CDC27, possible protein 92.7 2.5 8.6E-05 31.9 13.9 69 89-157 62-148 (242)
252 4b4t_S RPN3, 26S proteasome re 92.6 0.41 1.4E-05 43.0 8.2 123 85-209 177-329 (523)
253 3mkq_B Coatomer subunit alpha; 92.5 2.2 7.4E-05 32.5 11.0 48 98-150 14-61 (177)
254 3txn_A 26S proteasome regulato 92.2 1.8 6E-05 37.7 11.5 94 128-227 104-211 (394)
255 3mkq_A Coatomer beta'-subunit; 91.7 1.7 5.7E-05 41.3 12.1 27 89-115 681-707 (814)
256 4fhn_B Nucleoporin NUP120; pro 91.5 1 3.5E-05 45.1 10.5 119 89-208 842-988 (1139)
257 3spa_A Mtrpol, DNA-directed RN 90.2 2.9 0.0001 41.0 11.7 87 124-211 128-221 (1134)
258 3mkq_B Coatomer subunit alpha; 88.1 1.8 6.3E-05 32.9 7.1 55 121-183 6-60 (177)
259 3lpz_A GET4 (YOR164C homolog); 88.0 11 0.00039 31.8 17.0 26 155-180 134-159 (336)
260 1qsa_A Protein (soluble lytic 88.0 2.5 8.4E-05 39.2 9.3 50 135-184 297-346 (618)
261 1qsa_A Protein (soluble lytic 87.6 2.9 9.8E-05 38.8 9.6 49 102-150 298-346 (618)
262 4b4t_R RPN7, 26S proteasome re 87.4 0.73 2.5E-05 40.7 5.3 99 122-226 130-237 (429)
263 4gq2_M Nucleoporin NUP120; bet 86.8 12 0.00039 36.8 13.8 94 95-192 816-933 (950)
264 2wvi_A Mitotic checkpoint seri 85.9 5.6 0.00019 29.8 8.6 110 3-154 16-127 (164)
265 4b4t_S RPN3, 26S proteasome re 83.7 2.3 7.7E-05 38.3 6.6 69 86-156 228-303 (523)
266 4a1g_A Mitotic checkpoint seri 83.0 12 0.0004 27.7 9.1 46 108-153 84-131 (152)
267 4aez_C MAD3, mitotic spindle c 82.5 8.6 0.00029 30.3 8.7 65 85-155 116-182 (223)
268 4b4t_P 26S proteasome regulato 81.2 15 0.00051 32.4 11.0 104 123-232 137-255 (445)
269 3t5v_B Nuclear mRNA export pro 80.6 6.1 0.00021 35.1 8.1 108 103-210 140-284 (455)
270 3t5x_A PCI domain-containing p 79.1 7.3 0.00025 30.3 7.3 39 86-124 11-49 (203)
271 2crb_A Nuclear receptor bindin 77.5 5.3 0.00018 26.5 5.0 31 87-117 13-43 (97)
272 3ax2_A Mitochondrial import re 76.7 7.9 0.00027 24.5 5.6 34 92-125 20-53 (73)
273 1wy6_A Hypothetical protein ST 74.7 18 0.00063 26.3 7.6 52 135-186 103-154 (172)
274 3ax2_A Mitochondrial import re 74.7 13 0.00046 23.5 6.3 32 162-193 22-53 (73)
275 3esl_A Checkpoint serine/threo 74.6 28 0.00094 27.0 12.2 69 85-154 76-146 (202)
276 3re2_A Predicted protein; meni 74.4 24 0.00082 30.0 9.3 80 122-201 254-346 (472)
277 3t5x_A PCI domain-containing p 72.4 9.8 0.00033 29.6 6.5 52 123-174 14-70 (203)
278 1wy6_A Hypothetical protein ST 70.2 27 0.00094 25.4 7.6 62 92-153 93-155 (172)
279 3u84_A Menin; MLL, JUND, ledgf 69.2 34 0.0012 29.7 9.3 59 142-200 298-367 (550)
280 2w2u_A Hypothetical P60 katani 69.1 7.9 0.00027 25.2 4.4 17 134-150 30-46 (83)
281 2crb_A Nuclear receptor bindin 67.9 11 0.00038 25.0 4.8 27 158-184 16-42 (97)
282 2v6y_A AAA family ATPase, P60 67.4 8.9 0.0003 25.0 4.4 15 169-183 23-37 (83)
283 3esl_A Checkpoint serine/threo 67.3 41 0.0014 26.0 9.1 65 124-189 81-147 (202)
284 1pve_A HHR23B, UV excision rep 66.2 5.2 0.00018 25.3 2.9 21 266-286 30-50 (72)
285 4gq4_A Menin; tumor suppressor 65.7 65 0.0022 28.0 10.3 81 122-202 261-354 (489)
286 2w2u_A Hypothetical P60 katani 65.6 13 0.00046 24.1 5.0 32 87-118 17-48 (83)
287 4ady_A RPN2, 26S proteasome re 64.2 1.1E+02 0.0038 29.9 13.3 137 86-235 410-560 (963)
288 2ijq_A Hypothetical protein; s 64.1 42 0.0014 24.9 9.1 61 91-151 34-103 (161)
289 3t5v_B Nuclear mRNA export pro 64.0 34 0.0012 30.3 8.8 65 92-156 179-254 (455)
290 2wpv_A GET4, UPF0363 protein Y 63.0 66 0.0022 26.8 11.3 93 89-181 53-158 (312)
291 2cfu_A SDSA1; SDS-hydrolase, l 62.9 19 0.00065 33.6 7.4 53 158-210 450-502 (658)
292 2v6y_A AAA family ATPase, P60 62.3 17 0.00057 23.6 5.0 27 91-117 13-39 (83)
293 4gq2_M Nucleoporin NUP120; bet 60.7 17 0.0006 35.5 7.0 69 89-157 840-932 (950)
294 4a5x_A MITD1, MIT domain-conta 60.6 20 0.00068 23.5 5.1 30 88-117 15-44 (86)
295 1om2_A Protein (mitochondrial 57.8 13 0.00045 24.9 3.9 32 92-123 23-54 (95)
296 1om2_A Protein (mitochondrial 56.3 21 0.00072 23.9 4.7 28 162-189 25-52 (95)
297 2cfu_A SDSA1; SDS-hydrolase, l 56.1 27 0.00093 32.6 7.2 50 123-172 449-498 (658)
298 2v6x_A Vacuolar protein sortin 54.5 26 0.00089 22.7 5.0 30 88-117 12-41 (85)
299 4aez_C MAD3, mitotic spindle c 54.2 78 0.0027 24.9 8.8 78 109-189 97-182 (223)
300 1wfd_A Hypothetical protein 15 53.7 27 0.00092 23.2 5.0 29 89-117 15-43 (93)
301 2llw_A Heat shock protein STI1 52.0 18 0.00062 22.7 3.6 14 276-289 51-64 (71)
302 2rpa_A Katanin P60 ATPase-cont 49.6 18 0.00063 23.2 3.4 27 91-117 14-40 (78)
303 2cpt_A SKD1 protein, vacuolar 48.8 28 0.00096 24.3 4.6 23 93-115 22-44 (117)
304 4ady_A RPN2, 26S proteasome re 48.8 1.5E+02 0.0051 29.0 10.9 60 91-151 457-518 (963)
305 3re2_A Predicted protein; meni 48.3 86 0.0029 26.8 8.0 118 89-211 255-395 (472)
306 2ijq_A Hypothetical protein; s 44.3 95 0.0032 23.0 8.2 59 127-185 36-103 (161)
307 3lpz_A GET4 (YOR164C homolog); 44.2 1.4E+02 0.0049 25.0 10.5 112 90-211 36-156 (336)
308 4a1g_A Mitotic checkpoint seri 43.3 95 0.0032 22.7 7.9 50 141-190 83-134 (152)
309 2uwj_G Type III export protein 43.1 37 0.0013 23.0 4.2 71 135-211 18-88 (115)
310 2p58_C Putative type III secre 42.1 79 0.0027 21.5 8.2 77 129-211 13-89 (116)
311 2cwy_A Hypothetical protein TT 41.7 74 0.0025 21.0 5.9 27 95-121 7-33 (94)
312 4a5x_A MITD1, MIT domain-conta 40.7 52 0.0018 21.4 4.7 18 134-151 27-44 (86)
313 2wvi_A Mitotic checkpoint seri 39.2 1.2E+02 0.004 22.6 9.2 48 142-189 79-128 (164)
314 3u84_A Menin; MLL, JUND, ledgf 39.0 1.4E+02 0.0046 26.1 8.0 64 89-152 277-347 (550)
315 2rpa_A Katanin P60 ATPase-cont 37.2 35 0.0012 21.8 3.3 27 126-152 15-41 (78)
316 2i9o_A MHB8A peptide; beta-hai 36.4 18 0.00063 18.3 1.4 9 305-313 13-21 (37)
317 2v6x_A Vacuolar protein sortin 35.4 69 0.0024 20.6 4.7 18 134-151 24-41 (85)
318 1wfd_A Hypothetical protein 15 35.3 69 0.0023 21.1 4.7 16 135-150 27-42 (93)
319 3myv_A SUSD superfamily protei 34.9 92 0.0032 27.3 6.9 28 158-185 191-218 (454)
320 3lew_A SUSD-like carbohydrate 34.2 1.1E+02 0.0036 27.3 7.2 27 125-151 205-231 (495)
321 3myv_A SUSD superfamily protei 32.9 1E+02 0.0034 27.1 6.8 47 105-151 164-218 (454)
322 2cpt_A SKD1 protein, vacuolar 32.5 70 0.0024 22.2 4.5 15 136-150 31-45 (117)
323 4b4t_O 26S proteasome regulato 32.2 2.4E+02 0.0082 24.1 10.7 89 97-185 84-197 (393)
324 3kez_A Putative sugar binding 32.0 1.2E+02 0.004 26.7 7.1 28 158-185 197-224 (461)
325 2vkj_A TM1634; membrane protei 31.7 1.1E+02 0.0038 20.1 5.8 35 85-119 49-83 (106)
326 3lew_A SUSD-like carbohydrate 31.6 1.4E+02 0.0046 26.6 7.5 48 140-187 175-233 (495)
327 3k6g_A Telomeric repeat-bindin 31.6 15 0.00053 24.6 0.9 19 272-290 69-87 (111)
328 2e2a_A Protein (enzyme IIA); h 31.4 97 0.0033 21.0 5.0 33 85-117 16-48 (105)
329 1wcr_A PTS system, N, N'-diace 30.8 1E+02 0.0035 20.9 5.0 33 85-117 14-46 (103)
330 3kez_A Putative sugar binding 29.8 1.4E+02 0.0049 26.1 7.3 46 106-151 171-224 (461)
331 3mcx_A SUSD superfamily protei 29.3 1.2E+02 0.0041 26.7 6.7 27 125-151 204-230 (477)
332 2lnm_A Protein TIC 40, chlorop 29.2 95 0.0033 18.6 4.5 18 226-243 16-33 (62)
333 2qsf_X RAD23, UV excision repa 27.9 56 0.0019 24.5 3.5 43 225-285 26-69 (171)
334 2f4m_B UV excision repair prot 27.8 1E+02 0.0036 18.5 4.8 19 267-285 29-47 (61)
335 3k1s_A PTS system, cellobiose- 27.6 1.2E+02 0.0042 20.7 5.0 33 85-117 18-50 (109)
336 3mcx_A SUSD superfamily protei 26.6 1.3E+02 0.0045 26.5 6.5 49 139-187 176-232 (477)
337 3l8r_A PTCA, putative PTS syst 25.5 1.4E+02 0.0047 20.9 5.0 34 84-117 32-65 (120)
338 4gq4_A Menin; tumor suppressor 25.3 3.4E+02 0.012 23.7 10.6 78 89-166 262-352 (489)
339 2lqh_B Forkhead box O3, FOXO3A 30.6 15 0.00053 20.0 0.0 9 304-312 23-31 (52)
340 2yhe_A SEC-alkyl sulfatase; hy 30.0 16 0.00055 34.2 0.0 53 159-211 463-515 (668)
341 3bu8_A Telomeric repeat-bindin 23.6 60 0.0021 25.4 3.0 51 131-181 122-172 (235)
342 3hdx_A SUSD homolog, SUSD supe 22.4 2E+02 0.0069 25.3 6.8 29 124-152 198-226 (478)
343 2dl1_A Spartin; SPG20, MIT, st 21.0 89 0.003 21.7 3.2 33 137-184 17-49 (116)
344 3bqo_A Telomeric repeat-bindin 20.9 53 0.0018 25.3 2.2 36 97-132 125-160 (211)
345 2yhe_A SEC-alkyl sulfatase; hy 26.1 21 0.00072 33.4 0.0 51 90-140 462-512 (668)
346 3snx_A SUSD homolog, putative 20.3 2.1E+02 0.0072 25.1 6.4 31 156-186 190-220 (460)
No 1
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=1.1e-23 Score=172.13 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=130.5
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+.+|+++++.+| .+ +.+++.+|.++...|++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p---~~-----------------------------------~~a~~~lg~~~~~~g~~ 55 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENP---QD-----------------------------------PEALYWLARTQLKLGLV 55 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSS---SC-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHHHHcCCH
Confidence 34468899999999999999999 44 33567777777777777
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-----------KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK 174 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 174 (314)
++|+..|+++++++|+++.++.++|.++... |++++|+..|+++++++|+++.+++.+|.++...|+++
T Consensus 56 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 7777777777777777777777777777777 77777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 175 AALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
+|+..|+++++++ +++.++.++|.++...|++++|+ ..+..+.+..|.++.++..++.++...
T Consensus 136 ~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~P~~~~~~~~la~~~~~~ 198 (217)
T 2pl2_A 136 KAEASLKQALALE-DTPEIRSALAELYLSMGRLDEAL------AQYAKALEQAPKDLDLRVRYASALLLK 198 (217)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 7777777777777 77777777777777777777776 677777777777777777776665554
No 2
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.90 E-value=6.8e-23 Score=157.58 Aligned_cols=146 Identities=11% Similarity=0.025 Sum_probs=131.8
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
.|.....+|++++|+..|++++..+| + .+..++.+|.+|+..
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p---~-----------------------------------~~~~~~~la~~y~~~ 44 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPR---Q-----------------------------------KSIKGFYFAKLYYEA 44 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHH---H-----------------------------------HHTTHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCc---c-----------------------------------cHHHHHHHHHHHHHc
Confidence 45566789999999999999988877 2 244688999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA-YT 181 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-~~ 181 (314)
|+|++|+.+|+++++++|+++.+|+++|.+|...|++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++
T Consensus 45 ~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 45 KEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887765 59
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNLNN 206 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~~~ 206 (314)
++++++|+++.++..++.++...|+
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999888775
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.90 E-value=2.1e-22 Score=150.08 Aligned_cols=119 Identities=28% Similarity=0.441 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
..+|..+..+..+|+.+++.|+|++|+..|+++++++|.++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 201 (314)
+|.++..+|++++|+..|+++++++|++..++..++.|+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999998874
No 4
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.89 E-value=2.3e-22 Score=159.51 Aligned_cols=163 Identities=21% Similarity=0.242 Sum_probs=148.2
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
|..+..+|++++|+++|+++++++| .+ +.++..+|.++...|
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p---~~-----------------------------------~~~~~~la~~~~~~~ 53 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADP---NN-----------------------------------VETLLKLGKTYMDIG 53 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHHHHCC
Confidence 4445679999999999999999999 33 347899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
++++|+..+++++..+|.++.++..+|.++...++++.|+..+.+++.++|.+..++..+|.++..+|++++|+..|+++
T Consensus 54 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 54 LPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD 230 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 230 (314)
++++|+++.++.++|.++..+|++++|+ ..+..+++.-|.+
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~p~~ 174 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAV------KYFKKALEKEEKK 174 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTHHH
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHH------HHHHHHHhCCccC
Confidence 9999999999999999999999999998 7776666654443
No 5
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.89 E-value=2.3e-22 Score=190.73 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=150.3
Q ss_pred ccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHH
Q psy4130 20 LLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTA 99 (314)
Q Consensus 20 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 99 (314)
+.+.|..+..+|++++|+++|+++++++| +. +.++.++|.++
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P---~~-----------------------------------~~a~~nLg~~l 53 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVFP---EF-----------------------------------AAAHSNLASVL 53 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CC-----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHH
Confidence 33445556679999999999999999999 33 34799999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 100 MQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 100 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
...|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++|.++..+|++++|+..
T Consensus 54 ~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 54 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
|+++++++|++..++.+++.++..+|++++|. ..+..+.+.
T Consensus 134 ~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~------~~~~kal~l 174 (723)
T 4gyw_A 134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD------ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH------HHHHHHHHH
T ss_pred HHHHHHhCCCChHHHhhhhhHHHhcccHHHHH------HHHHHHHHh
Confidence 99999999999999999999999999999997 655555543
No 6
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=3.3e-22 Score=176.69 Aligned_cols=173 Identities=13% Similarity=0.035 Sum_probs=150.0
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC-HH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK-PE 106 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~ 106 (314)
...|++++|+.+|++++.++| .+ ..+|+.+|.++...|+ ++
T Consensus 108 ~~~g~~~~Al~~~~~al~l~P---~~-----------------------------------~~a~~~~g~~l~~~g~d~~ 149 (382)
T 2h6f_A 108 QRDERSERAFKLTRDAIELNA---AN-----------------------------------YTVWHFRRVLLKSLQKDLH 149 (382)
T ss_dssp HHTCCCHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHTTCCHH
T ss_pred HHCCChHHHHHHHHHHHHhCc---cC-----------------------------------HHHHHHHHHHHHHcccCHH
Confidence 457888999999999999999 33 3478889999999996 99
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++..+|++++|+.+|++++++
T Consensus 150 eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH-hcccccC-----CCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 187 DPNDPLYANNMQAAMSN-LNNSSSA-----SGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 187 ~p~~~~~~~~l~~~~~~-~~~~~~A-----~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
+|++..+|.+++.++.. .|..++| + ..+..++...+.++..|..++.++...
T Consensus 230 ~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el------~~~~~Al~l~P~~~~a~~~l~~ll~~~ 287 (382)
T 2h6f_A 230 DVRNNSVWNQRYFVISNTTGYNDRAVLEREV------QYTLEMIKLVPHNESAWNYLKGILQDR 287 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhcCcchHHHHHHHH------HHHHHHHHHCCCCHHHHHHHHHHHHcc
Confidence 99999999999999998 4544666 3 556777888888888998888887763
No 7
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.88 E-value=3.8e-21 Score=182.46 Aligned_cols=156 Identities=23% Similarity=0.248 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
..|++++++.++|.++..+|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+|+++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
|.++..+|++++|++.|+++++++|++..++.++|.++..+|++++|+ ..+..+++..+.+++.+..++.++..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi------~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAI------ASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 999999999999999999999999999999999999999999999999 99999999999999999999988777
Q ss_pred CC
Q psy4130 244 PG 245 (314)
Q Consensus 244 ~~ 245 (314)
.+
T Consensus 158 ~g 159 (723)
T 4gyw_A 158 VC 159 (723)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=3.9e-22 Score=176.63 Aligned_cols=149 Identities=18% Similarity=0.151 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
|.++..+..+|.++...|++++|+..|+++++.+|.++.++.++|.++...|++++|+..|+++++++|.++.++..+|.
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 33344444555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
++...|++++|+..|+++++++|++..++..++.++...|++++|. ..+..+.+..|.+++.+..++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL------MHYKEAIRISPTFADAYSNMGNT 382 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH------HHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCCCCHHHHHhHHHH
Confidence 5555555555555555555555555555555555555555555554 44444444444444444444443
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=2.2e-22 Score=154.70 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=133.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 173 (314)
.+|.++..+|++++|+..|++++..+|.++..++.+|.+|...|+|++|+.+|+++++++|+++.+|+.+|.++...|++
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 36888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchH-HHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGL-SEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
++|+..|+++++++|+++.++.++|.++...|++++|. ..+ ..+.+..|.+|.++.+...++...|
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa------~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA------KYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHH------HHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH------HHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999876 665 5788889999999999998877654
No 10
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=9.1e-22 Score=162.33 Aligned_cols=215 Identities=18% Similarity=0.099 Sum_probs=167.9
Q ss_pred HHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHH
Q psy4130 17 RKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNL 95 (314)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (314)
.......|......|++++|+.+|+++++.+|+. ......++.++...+... +.... .+.....|.....+..+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSSVNELERALAFY----DKALELDSSAATAYYGA 97 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCcchHHHHHH
Confidence 3344556667778999999999999999999944 223344455665555432 22221 22233455678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKA 175 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 175 (314)
|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130 176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA 242 (314)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 242 (314)
|+..|++++..+|++..++..++.++...|++++|. ..+..+.+..+.++..+..+..+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL------EMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH------HHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH------HHHHHHHccCcchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998 8888999999999998888776643
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=3.5e-21 Score=157.23 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
|.++..++.+|.++...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..|+++++++|+++.+++.+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 166 AYTQM-----------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 166 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
++... |++++|+..|+++++++|+++.++.++|.++...|++++|+ ..+..+++.. .++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~-~~~~~~ 154 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE------ASLKQALALE-DTPEIR 154 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHC-CCHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH------HHHHHHHhcc-cchHHH
Confidence 99999 99999999999999999999999999999999999999999 8888888888 999999
Q ss_pred HHHHHhhcCC
Q psy4130 235 QVFGELFANP 244 (314)
Q Consensus 235 ~~l~~~~~~~ 244 (314)
..++.++...
T Consensus 155 ~~la~~~~~~ 164 (217)
T 2pl2_A 155 SALAELYLSM 164 (217)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999887664
No 12
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.87 E-value=1.5e-21 Score=160.23 Aligned_cols=176 Identities=19% Similarity=0.155 Sum_probs=159.0
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
|......|++++|+++|+++++++| .. +...++.+|.++...|
T Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~~---~~----------------------------------~~~~~~~~~~~~~~~~ 56 (228)
T 4i17_A 14 GNDALNAKNYAVAFEKYSEYLKLTN---NQ----------------------------------DSVTAYNCGVCADNIK 56 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTT---TC----------------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHhccC---CC----------------------------------CcHHHHHHHHHHHHhh
Confidence 3445568999999999999999987 11 1236777999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA-------KAYGRMGLAYTQMNDYKAA 176 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A 176 (314)
++++|+..|++++..+|.++.++..+|.+|..+|++++|+..++++++++|+++ .+|+.+|.++...|++++|
T Consensus 57 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 136 (228)
T 4i17_A 57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKA 136 (228)
T ss_dssp CHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHH
Confidence 999999999999999999999999999999999999999999999999999998 6799999999999999999
Q ss_pred HHHHHHHHhhCCC--CHHHHHHHHHHHHHhccc---------------------------ccCCCCCCCcchHHHHHHhc
Q psy4130 177 LEAYTKAAELDPN--DPLYANNMQAAMSNLNNS---------------------------SSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 177 ~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~---------------------------~~A~~~~~~~~~~~~~~~~~ 227 (314)
+..|+++++++|+ +..++.++|.++...|+. ++|. ..+..+.+..
T Consensus 137 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~------~~~~~a~~l~ 210 (228)
T 4i17_A 137 EENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAV------DYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHC
T ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH------HHHHHHhhcC
Confidence 9999999999999 999999999999999988 7787 8888888888
Q ss_pred cCChHHHHHHHHhhc
Q psy4130 228 LSDPSIQQVFGELFA 242 (314)
Q Consensus 228 ~~~p~~~~~l~~~~~ 242 (314)
|.++++...+..+..
T Consensus 211 p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 211 PNRTEIKQMQDQVKA 225 (228)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999998888877643
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.87 E-value=6.6e-22 Score=175.13 Aligned_cols=208 Identities=18% Similarity=0.166 Sum_probs=118.3
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
|..+...|++++|+++|++++.++|++ ...+..++.++...++.+ +.... .+.....|+....+..+|.++...
T Consensus 74 g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 74 GNVYKERGQLQEAIEHYRHALRLKPDF-IDGYINLAAALVAAGDMEGAVQAY----VSALQYNPDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHSCSSHHHHHH----HHHHHHCTTCTHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCcch-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 334455777888888888888877733 122334444444444321 11111 111223444455556666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
|++++|+..|++++..+|.++.+|.++|.++...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|++
T Consensus 149 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130 183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA 242 (314)
Q Consensus 183 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 242 (314)
++.++|++..++..++.++...|++++|. ..+..+....+.+++.+..++.++.
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAI------DTYRRAIELQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 66666666556666666666666666655 5555555555555555555554443
No 14
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.6e-21 Score=162.12 Aligned_cols=203 Identities=16% Similarity=0.122 Sum_probs=171.8
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHH-------HHHHHHHHH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIE-------AEKYKNLGN 97 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~ 97 (314)
.....|++++|+.+|+++++.+ ++ ......++.++...++.. +.... .+.....|.. +..+..+|.
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~-~~-~~~~~~~~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH-KD-ITYLNNRAAAEYEKGEYETAISTL----NDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-CC-THHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh-cc-HHHHHHHHHHHHHcccHHHHHHHH----HHHHHhCcccccchHHHHHHHHHHHH
Confidence 3456899999999999999888 33 445556666666665432 22221 1223334443 789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH--------------------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAID--------------------------CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
++...|++++|+..|++++. .+|.++.++..+|.++...|++++|+.++++++.
T Consensus 88 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 88 AYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999999999 6677788999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc----
Q psy4130 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV---- 227 (314)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---- 227 (314)
.+|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|. ..+..+.+..
T Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL------ETLDAARTKDAEVN 241 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHhChhhc
Confidence 999999999999999999999999999999999999999999999999999999999998 8888888887
Q ss_pred --cCChHHHHHHHHh
Q psy4130 228 --LSDPSIQQVFGEL 240 (314)
Q Consensus 228 --~~~p~~~~~l~~~ 240 (314)
+.+++++..+...
T Consensus 242 ~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 242 NGSSAREIDQLYYKA 256 (258)
T ss_dssp TTTTHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHh
Confidence 7778887777654
No 15
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.86 E-value=1.6e-20 Score=165.88 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=151.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN-YKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~ 160 (314)
+...|..+.+|..+|.++...|++++|+..|++++.++|.+..+|+++|.++..+|+ +++|+.+|++++.++|++..+|
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 456789999999999999999999999999999999999999999999999999997 9999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+++|.++..+|++++|+..|+++++++|++..+|.++|.++..+|++++|+ ..+..+++.-+.++..|..++.+
T Consensus 170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl------~~~~~al~l~P~~~~a~~~lg~~ 243 (382)
T 2h6f_A 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL------QYVDQLLKEDVRNNSVWNQRYFV 243 (382)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH------HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH------HHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred hcCC
Q psy4130 241 FANP 244 (314)
Q Consensus 241 ~~~~ 244 (314)
+...
T Consensus 244 l~~l 247 (382)
T 2h6f_A 244 ISNT 247 (382)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7773
No 16
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=3.4e-20 Score=146.89 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
+++.+|+.+|.++...|+|++|+..|+++++++|+++.++..+|.+|...|++++|+..+.+++..+|.++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
+...++++.|+..+.+++.++|++..++..+|.++..+|++++|+ ..+..+.+..|.++.++..++.++...+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAI------EAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHH------HHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999877743
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.86 E-value=1.9e-21 Score=170.64 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=89.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 173 (314)
|.++...|++++|+..|++++..+|. ++.++.++|.++...|++++|+..|+++++++|+++.+|..+|.++...|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 55555556666666666666666666 6777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130 174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS 229 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 229 (314)
++|+..|+++++++|++..++.+++.++..+|++++|. ..+..+....+.
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~~~ 313 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV------SNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH------HHHHHHHHhCcc
Confidence 77777777777777777777777777777777777776 666666655554
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=9.9e-22 Score=172.49 Aligned_cols=210 Identities=11% Similarity=0.011 Sum_probs=171.9
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
......|++++|+.+|+++++.+|++ ......++.++...+... +.... .+.....|.++.++..+|.++...|
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAENENEQAAIVAL----QRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHCCCHHHHHHHH----HHHHhcCCCCHHHHHHHHHHHHccc
Confidence 34456889999999999999999954 233445566666665432 22221 2234456677889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHH----------HHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcC
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNR----------AASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLAYTQMN 171 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~l----------a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g 171 (314)
++++|+..|+++++.+|.+..++..+ |.++...|++++|+..+++++.++|. ++.++..+|.++...|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 99999999999999998876666555 99999999999999999999999999 8999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
++++|+..|+++++++|+++.++..++.++...|++++|. ..+..+....+.++..+..++.++...+
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAV------EAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999 8899999999999999999998877643
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=163.51 Aligned_cols=202 Identities=14% Similarity=0.088 Sum_probs=117.5
Q ss_pred hhh-cHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 29 SKE-GIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 29 ~~~-~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
..| ++++|+.+|+++++.+|++ ......++.++...+... +.... .+.....|.....+..+|.++...|+++
T Consensus 102 ~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 102 MVGHKNEHARRYLSKATTLEKTY-GPAWIAYGHSFAVESEHDQAMAAY----FTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HSCSCHHHHHHHHHHHHTTCTTC-THHHHHHHHHHHHHTCHHHHHHHH----HHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HhhhhHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHccCHHHHHHHH----HHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 344 5666666666666666633 122333344444333221 11111 1112223334455566666666666666
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID---------PHYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
+|+..|++++..+|.++.++..+|.++...|++++|+..+++++... |.++.++..+|.++...|++++|+
T Consensus 177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66666666666666666666666666666666666666666666664 445566666666666666666666
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
..|+++++++|++..++..++.++...|++++|. ..+..+.+..+.++..+..++..+
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV------DYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH------HHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH------HHHHHHHccCCCchHHHHHHHHHH
Confidence 6666666666666666666666666666666665 555555555556666666666554
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.4e-20 Score=164.82 Aligned_cols=206 Identities=14% Similarity=0.060 Sum_probs=129.1
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
....|++++|+.+|+++++.+|++ ......++.++...+... +.... .+.....|.++.++..+|.++...|++
T Consensus 74 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 74 RLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAENEQELLAISAL----RRCLELKPDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCcCHHHHHHHH----HHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 344677777777777777777733 222334445555444322 22211 122234455666777777777777777
Q ss_pred HHHHHHHHHHHHcCCC---------------------------------------------------CHHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNS---------------------------------------------------NPVYYCNRAASNN 134 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~---------------------------------------------------~~~~~~~la~~~~ 134 (314)
++|+..|++++..+|. ++.++.++|.++.
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 7776666666554443 4556666677777
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCC
Q psy4130 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSG 214 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (314)
..|++++|+..+++++.++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++...|++++|.
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~--- 305 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV--- 305 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH---
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH---
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777776
Q ss_pred CCcchHHHHHHhccCC-----------hHHHHHHHHhhcC
Q psy4130 215 GVFPGLSEMSTKVLSD-----------PSIQQVFGELFAN 243 (314)
Q Consensus 215 ~~~~~~~~~~~~~~~~-----------p~~~~~l~~~~~~ 243 (314)
..+..+....+.+ +.+|..++.++..
T Consensus 306 ---~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 306 ---EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp ---HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 6666666655555 4555555555444
No 21
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.85 E-value=3.6e-20 Score=155.55 Aligned_cols=210 Identities=15% Similarity=0.104 Sum_probs=168.1
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.....|++++|+.+|+++++.+|++.. ....++.++...+.. .+.......... .......+.++..+|.++...|+
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKKYNSPY-IYNRRAVCYYELAKYDLAQKDIETYFSK-VNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTTCCCST-THHHHHHHHHHTTCHHHHHHHHHHHHTT-SCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHccc
Confidence 344689999999999999999996633 355666666665543 333332222221 11222236679999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
+++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++++|.++.+++.+|...+..+++++|+..|++++
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999955556669999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhcc---cccCCCCCCCcchHHHHHHhccCCh--------HHHHHHHHhhcC
Q psy4130 185 ELDPNDPLYANNMQAAMSNLNN---SSSASGSGGVFPGLSEMSTKVLSDP--------SIQQVFGELFAN 243 (314)
Q Consensus 185 ~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~p--------~~~~~l~~~~~~ 243 (314)
+++|++..++..++.++..+++ +++|. ..+..+.+.....| +++..++.++..
T Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 233 (272)
T 3u4t_A 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAK------PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI 233 (272)
T ss_dssp HHSTTCHHHHHHHHHHHHHHSTTCSSCTTH------HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHcCcchhhHHHH------HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 88887 77777777664433 345555555444
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.2e-20 Score=159.07 Aligned_cols=207 Identities=12% Similarity=0.033 Sum_probs=174.3
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC-CH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD-KP 105 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~ 105 (314)
...|++++|++.|+++++.+|..... ...++.++...+. .++.... .+.....|.++..+..+|.++...| ++
T Consensus 33 ~~~g~~~~A~~~~~~~l~~~p~~~~~-~~~~~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (330)
T 3hym_B 33 YYNCDFKMCYKLTSVVMEKDPFHASC-LPVHIGTLVELNKANELFYLS----HKLVDLYPSNPVSWFAVGCYYLMVGHKN 107 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTTT-HHHHHHHHHHHTCHHHHHHHH----HHHHHHCTTSTHHHHHHHHHHHHSCSCH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCChhh-HHHHHHHHHHhhhHHHHHHHH----HHHHHhCcCCHHHHHHHHHHHHHhhhhH
Confidence 34789999999999999999965333 2233444433333 3333221 2223456677889999999999999 99
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
++|+..|++++..+|.++.+|..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++
T Consensus 108 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc---------cCChHHHHHHHHhhcCCC
Q psy4130 186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV---------LSDPSIQQVFGELFANPG 245 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~~~p~~~~~l~~~~~~~~ 245 (314)
.+|+++.++..++.++...|++++|. ..+..+.... +.++.++..++.++...+
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAE------KWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHH------HHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998 7777777765 556678888887766543
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=9.8e-21 Score=157.31 Aligned_cols=201 Identities=13% Similarity=0.033 Sum_probs=170.9
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
....|++++|+++|+++++.+|.. ......++.++...++.. +.... .+.....|.....+..+|.++...|++
T Consensus 47 ~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 47 YLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQTEMEPKLADEEY----RKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 445889999999999999999944 223445555666555432 22221 122334556678999999999999999
Q ss_pred HHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAID--CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 106 ~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
++|+.+|++++. .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999 888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
++.+|.+..++..++.++...|++++|. ..+..+....+.++..+..+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~~l~ 250 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAA------SYGLQLKRLYPGSLEYQEFQA 250 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTSHHHHHHHT
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHH------HHHHHHHHHCCCCHHHHHHHh
Confidence 9999999999999999999999999998 888888888888988776553
No 24
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.84 E-value=9.8e-20 Score=139.70 Aligned_cols=113 Identities=11% Similarity=0.003 Sum_probs=108.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130 79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK 158 (314)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 158 (314)
.+....+|.++.+++.+|.+++..|++++|+..|++++.++|.++.+|+++|.++..+|++++|+.+|+++++++|+++.
T Consensus 26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~ 105 (151)
T 3gyz_A 26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105 (151)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence 44466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (314)
+|+++|.++..+|++++|+.+|++++++.|+.+
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999865
No 25
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.84 E-value=2.6e-20 Score=169.72 Aligned_cols=203 Identities=16% Similarity=0.134 Sum_probs=173.5
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh--hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD--EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
..+.+++++..++++....|+. ......++.++...++. ++.... .++...+|.++.+|+.+|.++...|+++
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~-a~~~~~lg~~~~~~g~~~~~A~~~~----~~al~~~p~~~~a~~~lg~~~~~~g~~~ 154 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVE-AQALMLKGKALNVTPDYSPEAEVLL----SKAVKLEPELVEAWNQLGEVYWKKGDVT 154 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSSSSCCHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHhccccHHHHHHHH----HHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4556889999999998888833 22334455566554433 222221 3335567788899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM------- 170 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------- 170 (314)
+|+.+|+++++++|+ ..++.++|.++... |++++|+..|+++++++|+++.+|+.+|.++...
T Consensus 155 ~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 155 SAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp HHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999 79999999999999 9999999999999999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 171 -NDYKAALEAYTKAAELDP---NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 171 -g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
|++++|+.+|+++++++| +++.++.++|.++..+|++++|. ..+..+.+..+.++..+..++.++..
T Consensus 234 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~l~p~~~~a~~~l~~~~~~ 304 (474)
T 4abn_A 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL------EGFSQAAALDPAWPEPQQREQQLLEF 304 (474)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999 89999999999999888888877544
No 26
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=2.9e-20 Score=151.21 Aligned_cols=201 Identities=11% Similarity=0.054 Sum_probs=165.2
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc-CC
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ-DK 104 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 104 (314)
....|++++|+++|+++++.+|+. ......++.++...+... +.... .+.....|.....+..+|.++... |+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQYLKVNDKAQESF----RQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHcCChHHHHHHH----HHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 345889999999999999999944 223445555666555432 22221 222334556678899999999999 99
Q ss_pred HHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAID--CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 105 ~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
+++|+..|++++. .+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999 66777899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCC-CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 183 AAELDP-NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 183 al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
++..+| .+..++..++.++...|+.++|. ..+..+....+.++..+..+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 173 YQSRVEVLQADDLLLGWKIAKALGNAQAAY------EYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHhCCCCCHHHHHHHHHHHHhcCcHHHHH------HHHHHHHHhCCCCHHHHHHhc
Confidence 999999 99999999999999999999985 555555667788888776654
No 27
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.83 E-value=1.5e-19 Score=151.39 Aligned_cols=173 Identities=15% Similarity=0.087 Sum_probs=151.7
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
......|++++|+..|+++++.+| .++. .+.+++.+|.+++..|+
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p---~~~~--------------------------------~~~a~~~lg~~~~~~~~ 67 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGR---THEW--------------------------------AADAQFYLARAYYQNKE 67 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCS---CSTT--------------------------------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCC---CCcc--------------------------------hHHHHHHHHHHHHHhCc
Confidence 344568999999999999999999 3321 24689999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCcHHHH-------------
Q psy4130 105 PEQAVIEYSKAIDCDNSN---PVYYCNRAASNNK--------LKNYKLALRDCQIAIKIDPHYAKAY------------- 160 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~------------- 160 (314)
+++|+..|+++++.+|++ +.+++.+|.++.. .|++++|+..|+++++.+|++..++
T Consensus 68 ~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~ 147 (261)
T 3qky_A 68 YLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL 147 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH
Confidence 999999999999998854 5789999999999 9999999999999999999987655
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHh----------cccccCCCCCCCcchHHHH
Q psy4130 161 ----GRMGLAYTQMNDYKAALEAYTKAAELDPN---DPLYANNMQAAMSNL----------NNSSSASGSGGVFPGLSEM 223 (314)
Q Consensus 161 ----~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~ 223 (314)
+.+|.++...|++++|+..|+++++..|+ .+.++..++.++..+ |++++|. ..+..+
T Consensus 148 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~------~~~~~~ 221 (261)
T 3qky_A 148 ARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV------ELYERL 221 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH------HHHHHH
Confidence 88999999999999999999999999998 567999999999988 8888998 888889
Q ss_pred HHhccCChHHHHHHH
Q psy4130 224 STKVLSDPSIQQVFG 238 (314)
Q Consensus 224 ~~~~~~~p~~~~~l~ 238 (314)
.+..|.+|.......
T Consensus 222 ~~~~p~~~~~~~a~~ 236 (261)
T 3qky_A 222 LQIFPDSPLLRTAEE 236 (261)
T ss_dssp HHHCTTCTHHHHHHH
T ss_pred HHHCCCChHHHHHHH
Confidence 999999886544433
No 28
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=5e-20 Score=160.15 Aligned_cols=201 Identities=10% Similarity=0.008 Sum_probs=172.0
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.....|++++|+.+|+++++.+|++ ......++.++...+.. .+.... .+.....|....++..+|.++...|+
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPDL----TKVIALKMDFTAARLQRGHLLLKQGK 86 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCccc-HHHHHHHHHHHHHccCHHHHHHHH----HHHHHhCCCcchHHHHHHHHHHHcCC
Confidence 3446899999999999999999944 22344555566655543 222221 22234566777899999999999999
Q ss_pred HHHHHHHHHHHHHcCC---CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDN---SNPVYYCNR------------AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
+++|+..|+++++.+| .+..++..+ |.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 87 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (359)
T 3ieg_A 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166 (359)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999999999 888888877 7999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHH
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVF 237 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l 237 (314)
.|++++|+..++++++.+|+++.++..++.++...|++++|. ..+..+....+.++..+..+
T Consensus 167 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~~ 228 (359)
T 3ieg_A 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSL------SEVRECLKLDQDHKRCFAHY 228 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhhCccchHHHHHH
Confidence 999999999999999999999999999999999999999998 88888888888888876544
No 29
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.83 E-value=5.2e-19 Score=145.00 Aligned_cols=149 Identities=23% Similarity=0.281 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
+..++.+|.+++..|+|++|+..|+++++.+| .+..+++++|.++...|++++|+.+|+++++.+|+++.++..+|.++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 47899999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC--ChHHHHHHH
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDP-------LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS--DPSIQQVFG 238 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~p~~~~~l~ 238 (314)
..+|++++|+..|+++++++|+++ .++..+|.++...|++++|+ ..+..+++..+. ++..+..++
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE------ENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH------HHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999999999999 67999999999999999998 777777777777 777777777
Q ss_pred HhhcC
Q psy4130 239 ELFAN 243 (314)
Q Consensus 239 ~~~~~ 243 (314)
.++..
T Consensus 161 ~~~~~ 165 (228)
T 4i17_A 161 VLFYN 165 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77554
No 30
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=1.1e-20 Score=172.25 Aligned_cols=183 Identities=17% Similarity=0.075 Sum_probs=157.6
Q ss_pred cCCCcchhhcH-HHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130 23 DTLNAESKEGI-EVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 23 ~~~~~~~~~~~-~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
.|..+...+++ ++|+++|+++++++|++ ...+..++.+|...++. ++...+.... ...|. ..++..+|.++.
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~-~~~~~~lg~~~~ 181 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWKKGDVTSAHTCFSGAL----THCKN-KVSLQNLSMVLR 181 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHH----TTCCC-HHHHHHHHHHHT
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhCCC-HHHHHHHHHHHH
Confidence 44455668899 99999999999999955 23455667677666643 3333322221 22333 488999999999
Q ss_pred hc---------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCC---CcHHHH
Q psy4130 101 QQ---------DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL--------KNYKLALRDCQIAIKIDP---HYAKAY 160 (314)
Q Consensus 101 ~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~ 160 (314)
.. |++++|+..|+++++++|.++.+|+++|.+|... |++++|+.+|+++++++| .++.+|
T Consensus 182 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 261 (474)
T 4abn_A 182 QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLH 261 (474)
T ss_dssp TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHH
T ss_pred HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHH
Confidence 99 9999999999999999999999999999999999 999999999999999999 999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+++|.++...|++++|+..|+++++++|++..++..++.++..+|++++|+
T Consensus 262 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999886
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=3.3e-19 Score=156.11 Aligned_cols=209 Identities=14% Similarity=0.101 Sum_probs=163.9
Q ss_pred CcchhhcHHHHHH-HHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130 26 NAESKEGIEVAVE-CLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 26 ~~~~~~~~~~Ai~-~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
.....+++++|++ +|++++.+.|+++. ...+.++..+...+.. .+.... .+.....|.++.++..+|.++.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF----EAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH----HHHHHSCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHH
Confidence 4456789999999 99999999996642 2344566666655543 333322 2223345667889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------------------------
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP-------------------------- 154 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------------- 154 (314)
..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTH
T ss_pred HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHH
Confidence 999999999999999999999999999999999999999888888877766554
Q ss_pred -----------------------C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130 155 -----------------------H--YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 155 -----------------------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 209 (314)
. ++.++..+|.++...|++++|+..|++++.++|+++.++..++.++...|++++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 4 678889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 210 ASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 210 A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
|. ..+..+....+.++..+..++.++...
T Consensus 270 A~------~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 270 AV------AAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HH------HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HH------HHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 98 888888888888898888888887654
No 32
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=7.3e-19 Score=130.44 Aligned_cols=118 Identities=27% Similarity=0.348 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..+..+..+|..++..|+|++|+..|+++++.+|.++.+|.++|.++..+|++++|+.+++++++++|+++.+|+.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHh
Q psy4130 167 YTQMNDYKAALEAYTKAAELD------PNDPLYANNMQAAMSNL 204 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~ 204 (314)
+..+|++++|+..|+++++++ |++..++..+..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999 99999999999887654
No 33
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=7.5e-19 Score=138.19 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=148.8
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
....|++++|+.+|+++++.+| .+ +..+..+|.++...|+++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~---~~-----------------------------------~~~~~~~~~~~~~~~~~~ 59 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADA---FD-----------------------------------VDVALHLGIAYVKTGAVD 59 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTS---CC-----------------------------------HHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCc---cC-----------------------------------hHHHHHHHHHHHHcCCHH
Confidence 3457899999999999999888 33 346889999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
+|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..
T Consensus 60 ~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 60 RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 187 DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 187 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
+|.++.++..++.++...|++++|. ..+..+....+.++.
T Consensus 140 ~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 140 RPNEGKVHRAIAFSYEQMGRHEEAL------PHFKKANELDEGASV 179 (186)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHCCCG
T ss_pred CccchHHHHHHHHHHHHcCCHHHHH------HHHHHHHHcCCCchh
Confidence 9999999999999999999999998 777777776666553
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=3.9e-19 Score=154.52 Aligned_cols=205 Identities=11% Similarity=0.074 Sum_probs=171.6
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.....|++++|+++|+++++.+|+. ......++.++...+... +..... +.....|.++..+..+|.++...|+
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDLK----AASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHH----HHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHHCCCHHHHHHHHH----HHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4456899999999999999999944 223445555666655432 222211 1122345667899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHH------------HHHHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYC------------NRAASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRMGLAYT 168 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~ 168 (314)
+++|+..|+++++.+|.+..++. .+|.++...|++++|+..+++++..+|+++ .++..+|.++.
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 283 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999988655 448889999999999999999999999987 44677999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
..|++++|+..|+++++.+|+++.++..+|.++...|++++|. ..+..+.+..|.++.++..+..+.
T Consensus 284 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~------~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI------QDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 888899999899999888877663
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.81 E-value=2.6e-19 Score=161.15 Aligned_cols=206 Identities=12% Similarity=0.084 Sum_probs=175.3
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
+......|++++|+.+|+++++.+|++ ......++.+|...+... +.... .+.....|.++..+..+|.++...
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCVWD-AELRELRAECFIKEGEPRKAISDL----KAASKLKNDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCGGGGHHHH----HHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHH----HHHHHhCCCCHHHHHHHHHHHHHc
Confidence 334556899999999999999999943 223445556666665433 22221 222344566788999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNR------------AASNNKLKNYKLALRDCQIAIKIDPHYA----KAYGRMGLA 166 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~ 166 (314)
|++++|+..|++++..+|.+..++..+ |.++...|++++|+..|++++.++|.++ ..+..+|.+
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 999999999999999999999888766 9999999999999999999999999985 488999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+...|++++|+..++++++++|+++.++..++.++...|++++|. ..+..+.+..|.++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI------QDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHhCcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 88888999889999998888844
No 36
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.81 E-value=5.4e-20 Score=160.16 Aligned_cols=180 Identities=18% Similarity=0.191 Sum_probs=149.3
Q ss_pred hhhcHHHHHHHHHH----HcCCCCCCCCCchhhHHHHHHHhch-------hhhhhh--hccCCCCCChhhHHHHHHHHHH
Q psy4130 29 SKEGIEVAVECLCK----AYDIPDNIDPASNVDIESLFQLYYK-------DEVLQW--YSNINFSPTEEVKIEAEKYKNL 95 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~----al~~~p~~~~~~~~~l~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 95 (314)
..+.+++|+..++. ++.+.|.+ .+...+........ .+...+ ............|..+..+..+
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~---ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~ 153 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY---AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKER 153 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT---TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc---ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHH
Confidence 36689999999999 99999944 22111111100000 000000 1112234456788999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNSN---------------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY 160 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 160 (314)
|.+++..|+|++|+..|++++.++|.+ ..+|.++|.||..+|++++|+.+|+++++++|+++.++
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 233 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGL 233 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999999999999999999998 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+++|.++..+|++++|+.+|+++++++|++..++..++.++..+|++++|.
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999884
No 37
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.81 E-value=1.5e-19 Score=171.65 Aligned_cols=150 Identities=9% Similarity=-0.063 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
.++.+++.+|.++...|++++|+..|+++++.+|+++.+|+++|.++..+|++++|+..|+++++++|+++.+++++|.+
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAAT 510 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 33457888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+..+|++++ +..|+++++++|++..+++++|.++..+|++++|+ ..+..+.+..+.++..+..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~------~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV------RTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH------HHHHhhcccCcccHHHHHHHHHHHHc
Confidence 888888888 88888888888888888888888888888888887 66665555566666777777766543
No 38
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.81 E-value=3.6e-19 Score=166.00 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=162.1
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.+...|++++|+++|+++++.+|++ ......++.+|...+.. ++..... +.....|.+...+..+|.++...|+
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMDPQF-GPAWIGFAHSFAIEGEHDQAISAYT----TAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHTCHHHHHHHHH----HHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH----HHHHhCccchHHHHHHHHHHHHcCC
Confidence 3455788888999998888888833 11233444455555433 2222211 1122344566788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCc-HHHHHHHHHHHHHcCCHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI------DPHY-AKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~~g~~~~A~ 177 (314)
+++|+..|+++++.+|.++.+|..+|.+|...|++++|+..|+++++. +|++ ..+|..+|.++...|++++|+
T Consensus 457 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999999998999999999999999999999999999888 6664 788899999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130 178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA 242 (314)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 242 (314)
..|+++++++|+++.++..++.++...|++++|. ..+..+.+..|.++..+..++.++.
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI------THLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH------HHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 8888888888888888888887764
No 39
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=2.7e-19 Score=133.10 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=114.9
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 114 KAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 114 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
++..++|+.+..+.++|.++++.|+|++|+.+|+++++++|.++.+|+++|.++..+|++++|+..|+++++++|+++.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 194 ANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
+.++|.++..+|++++|+ ..+..+++.-|.+++++..++.++
T Consensus 84 ~~~lg~~~~~~~~~~~A~------~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQ------RAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHH------HHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999 999999999999999998887763
No 40
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.81 E-value=6.9e-19 Score=133.64 Aligned_cols=127 Identities=17% Similarity=0.103 Sum_probs=116.6
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130 79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK 158 (314)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 158 (314)
.+....+|.+...++.+|..++..|++++|+..|++++..+|.++.+|+++|.++...|++++|+.+|++++.++|+++.
T Consensus 8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 45566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
+++.+|.++..+|++++|+.+|+++++++|+++........+...++
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776666665555443
No 41
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.80 E-value=1.5e-18 Score=132.82 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=114.4
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
...+|.+...++.+|.+++..|++++|+..|++++..+|.++.+|+++|.++...|++++|+.+|++++.++|+++.+++
T Consensus 14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 207 (314)
.+|.++..+|++++|+.+|+++++++|+++........+...+...
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877655555555544443
No 42
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.80 E-value=2.3e-19 Score=145.45 Aligned_cols=183 Identities=13% Similarity=0.014 Sum_probs=141.9
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+.+|+++++.+| +++..+.. . .. .......+...+.+|.++...|++
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~---~-~~---------------~~~~~~~~~~~~~lg~~~~~~g~~ 70 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNI---DRTEMYYW---T-NV---------------DKNSEISSKLATELALAYKKNRNY 70 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHH---H-HS---------------CTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC---CChHHHHH---h-hh---------------cchhhhhHHHHHHHHHHHHHCCCH
Confidence 34468999999999999999999 44332211 0 00 011223345677899999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND--YKAALEAYTKA 183 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~a 183 (314)
++|+..|+++++++|+++.+++++|.++...|++++|+.+|+++++++|+++.+|+.+|.+++..|+ ...+...+.++
T Consensus 71 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 71 DKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987764 55677888887
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
+..+|. ..+++.+|.++...|++++|+ ..+..+++..|. ++....+.
T Consensus 151 ~~~~~~-~~a~~~~g~~~~~~~~~~~A~------~~~~~al~l~P~-~~~~~~l~ 197 (208)
T 3urz_A 151 SSPTKM-QYARYRDGLSKLFTTRYEKAR------NSLQKVILRFPS-TEAQKTLD 197 (208)
T ss_dssp -CCCHH-HHHHHHHHHHHHHHHTHHHHH------HHHHHHTTTSCC-HHHHHHHH
T ss_pred hCCCch-hHHHHHHHHHHHHccCHHHHH------HHHHHHHHhCCC-HHHHHHHH
Confidence 654332 346788999999999999998 777666666554 33333333
No 43
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.80 E-value=2.7e-19 Score=161.06 Aligned_cols=201 Identities=10% Similarity=0.013 Sum_probs=169.6
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.....|++++|+.+|+++++.+|++ ......++.++...+.. .+.... .+.....|..+.++..+|.++...|+
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDN-YIAYYRRATVFLAMGKSKAALPDL----TKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHCCCHHHHHHHH----HHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 3456899999999999999999944 22334455566655543 222221 22234556778899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCH---HHHHHH------------HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNP---VYYCNR------------AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
+++|+..|++++..+|.+. .++..+ |.++...|++++|+..|++++..+|.++.++..+|.++..
T Consensus 110 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189 (450)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999999999999988 776655 6779999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHH
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVF 237 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l 237 (314)
.|++++|+..|+++++.+|+++.++..++.++...|++++|. ..+..+....+.++..+..+
T Consensus 190 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~~~ 251 (450)
T 2y4t_A 190 EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL------SEVRECLKLDQDHKRCFAHY 251 (450)
T ss_dssp TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCChHHHHHHH
Confidence 999999999999999999999999999999999999999998 88888888888888877665
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=3.9e-18 Score=145.42 Aligned_cols=193 Identities=14% Similarity=0.006 Sum_probs=155.2
Q ss_pred hhhcHHHHHHHHHHHcCC--CCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 29 SKEGIEVAVECLCKAYDI--PDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~--~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
..++.++|++.|++++.. +|++ ....+.++.++...++. ++.... .+ +.+..++..+|.++...|++
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~-~~~~~~la~~~~~~g~~~~Al~~l----~~-----~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTN-TTFLLMAASIYFYDQNPDAALRTL----HQ-----GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSC-HHHHHHHHHHHHHTTCHHHHHHHH----TT-----CCSHHHHHHHHHHHHHTTCH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCC-HHHHHHHHHHHHHCCCHHHHHHHH----hC-----CCCHHHHHHHHHHHHHCCCH
Confidence 367889999999998864 6844 22345556677666654 333332 11 45678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAA--SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
++|+..|+++++.+|++.......+. ++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++
T Consensus 147 ~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999998654443332 2334589999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhcccccC-CCCCCCcchHHHHHHhccCChHHHHHH
Q psy4130 184 AELDPNDPLYANNMQAAMSNLNNSSSA-SGSGGVFPGLSEMSTKVLSDPSIQQVF 237 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~p~~~~~l 237 (314)
++++|+++.++.+++.++...|+.+++ . ..+..+.+..|.+|.+..+.
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~------~~~~~~~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTN------RYLSQLKDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHH------HHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHH------HHHHHHHHhCCCChHHHHHH
Confidence 999999999999999999999999764 3 44567777888898776543
No 45
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=7.4e-20 Score=157.28 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 151 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33344444444444445555566666666666666777777777777777666666666677777777777777777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS 229 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 229 (314)
++++.+|++..++..++.++...|++++|. ..+..+....+.
T Consensus 231 ~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~~~ 272 (327)
T 3cv0_A 231 RALDINPGYVRVMYNMAVSYSNMSQYDLAA------KQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHTT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHhccHHHHH------HHHHHHHHhCCc
Confidence 777666666666667777777777766666 555555555555
No 46
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.3e-19 Score=155.74 Aligned_cols=207 Identities=12% Similarity=0.059 Sum_probs=171.6
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
....|++++|+.+|+++++.+|+. ......++.++...+... +.... .+.....|.....+..+|.++...|++
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPER-EEAWRSLGLTQAENEKDGLAIIAL----NHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 345889999999999999999943 223334555665555432 22221 222344566788999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNR--------------AA-SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
++|+..|++++..+|.+...+..+ +. ++...|++++|+..++++++.+|.++.++..+|.++...
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998887777 66 788999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
|++++|+..++++++.+|++..++..++.++...|++++|. ..+..+.+..+.++..+..++.++...
T Consensus 186 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL------DAYNRALDINPGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998 888888888889999998888887664
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=1.6e-17 Score=139.33 Aligned_cols=175 Identities=15% Similarity=0.064 Sum_probs=154.1
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....+++++|+..|+++++..| .+ .+..+..+..+|.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~---~~-------------------------------~~~~~~~~~~l~~~~~~~~~~ 59 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRA---LT-------------------------------DDERAQLLYERGVLYDSLGLR 59 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSC---CC-------------------------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhccc---cc-------------------------------CchhHHHHHHHHHHHHHcccH
Confidence 44567999999999999999866 21 345678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.++|.++.++..+|.++...|++++|+..|+++++
T Consensus 60 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 60 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
++|++......++.+ ...|++++|. ..+.......+.++..+......+
T Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~~ 188 (275)
T 1xnf_A 140 DDPNDPFRSLWLYLA-EQKLDEKQAK------EVLKQHFEKSDKEQWGWNIVEFYL 188 (275)
T ss_dssp HCTTCHHHHHHHHHH-HHHHCHHHHH------HHHHHHHHHSCCCSTHHHHHHHHT
T ss_pred hCCCChHHHHHHHHH-HHhcCHHHHH------HHHHHHHhcCCcchHHHHHHHHHH
Confidence 999998777766655 6679999998 777788888887777666555443
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=1.8e-19 Score=151.29 Aligned_cols=208 Identities=11% Similarity=0.033 Sum_probs=169.4
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCC---chhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPA---SNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~---~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
......|++++|+++|+++++ .|..+.. ....++.++...+... +.... .+.....|..+..+..+|.++.
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~----~~a~~~~~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQY----QAAVDRDTTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHH----HHHHhcCcccHHHHHHHHHHHH
Confidence 345568999999999999999 5533222 1346666776666433 22221 2234456667789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND---YKAAL 177 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~ 177 (314)
..|++++|+..|+++++.+|.++.+++++|......+++++|+..++++++++|+++.+++.+|.++...++ +++|+
T Consensus 120 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 199 (272)
T 3u4t_A 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAK 199 (272)
T ss_dssp HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTH
T ss_pred HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHH
Confidence 999999999999999999999999999999444455699999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhhC---CC-----CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 178 EAYTKAAELD---PN-----DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 178 ~~~~~al~~~---p~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
..|++++++. |+ ...++..+|.++...|++++|. ..+..+....|.++..+..+..+...
T Consensus 200 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 200 PYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD------AAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 9999999986 54 2368999999999999999999 99999999999999999988877554
No 49
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.79 E-value=4.7e-18 Score=126.56 Aligned_cols=114 Identities=29% Similarity=0.404 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------H
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-------A 157 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~ 157 (314)
.++.+.++..+|+.+++.|+|++|+.+|+++++++|.++.+|.++|.+|..+|+|++|+.+++++++++|++ +
T Consensus 4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999999998865 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 199 (314)
.+++++|.++..+|++++|+.+|++++..+|+ ++....+..
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 68999999999999999999999999999885 555555443
No 50
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.79 E-value=1.7e-17 Score=122.78 Aligned_cols=127 Identities=46% Similarity=0.709 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 161 (314)
....+..+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++..+|+++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 208 (314)
.+|.++...|++++|+..|+++++++|++..++..++.++..+|+++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999998864
No 51
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.79 E-value=3.1e-18 Score=133.18 Aligned_cols=124 Identities=33% Similarity=0.474 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
..+..+..++.+|.+++..|+|++|+.+|+++++++|.++.+|+++|.+|...|++++|+.+|+++++++|+++.+|+.+
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH--HHHHhccc
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA--AMSNLNNS 207 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~--~~~~~~~~ 207 (314)
|.++..+|++++|+.+|+++++++|++..++...+. +..++++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999885555444 44444444
No 52
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=1.2e-19 Score=139.17 Aligned_cols=117 Identities=10% Similarity=-0.064 Sum_probs=108.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188 (314)
Q Consensus 109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (314)
-..|++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
+++.+++++|.++..+|++++|+ ..+..+.+..+.++
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~------~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAK------ECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCHH
Confidence 99999999999999999999998 77777777665544
No 53
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.79 E-value=3.2e-18 Score=132.84 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------------------DNSNPVYYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
..+..+...|..++..|+|++|+..|++++.+ +|.+..+|+++|.||..+|+|++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45788999999999999999999999999999 777778999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcccccCC
Q psy4130 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-LYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 149 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~ 211 (314)
++.++|+++.+|+++|.++..+|++++|+..|+++++++|+++ .+...+..+....++..+..
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~ 152 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADS 152 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 78899999998888877764
No 54
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.78 E-value=3.3e-18 Score=159.46 Aligned_cols=181 Identities=14% Similarity=0.000 Sum_probs=95.7
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 104 (314)
.+...|++++|++.|+++++.+|++... ...++.++...+.. ++.... .......|.+...+..+|.++.+.|+
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~~g~ 388 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDV-YPLHLASLHESGEKNKLYLIS----NDLVDRHPEKAVTWLAVGIYYLCVNK 388 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTT-HHHHHHHHHHHTCHHHHHHHH----HHHHHHCTTSHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHH-HHHHHHHHHHhCCHHHHHHHH----HHHHhhCcccHHHHHHHHHHHHHhcc
Confidence 3456788888888888888877754222 22333333333322 111111 01112233344455555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
+++|+..|+++++.+|.+..+|..++.+|...|++++|+..|++++...|++..+|..+|.++...|++++|+..|++++
T Consensus 389 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 185 ELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.+|.++.++..++.++...|++++|.
T Consensus 469 ~~~~~~~~~~~~l~~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 469 ALFQYDPLLLNELGVVAFNKSDMQTAI 495 (597)
T ss_dssp HHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 555555555555555555555555554
No 55
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.78 E-value=4.2e-18 Score=158.49 Aligned_cols=157 Identities=13% Similarity=0.064 Sum_probs=121.7
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
.|++++|+++|+++++.+| .+ +.++..+|.++...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p---~~-----------------------------------~~~~~~lg~~~~~~g~~~~A~ 43 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP---QD-----------------------------------FVAWLMLADAELGMGDTTAGE 43 (568)
T ss_dssp ----------------------CC-----------------------------------HHHHHHHHHHHHHHTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC---CC-----------------------------------HHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999999999988 33 346888999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..|+++++++|+++.++.++|.+|..+|++++|+.+++++++++|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 44 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 44 MAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHh---cccccCCCCCCCcchHHHHHHhccCC
Q psy4130 190 DPLYANNMQAAMSNL---NNSSSASGSGGVFPGLSEMSTKVLSD 230 (314)
Q Consensus 190 ~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~ 230 (314)
+..++.+++.++..+ |++++|. ..+....+..+.+
T Consensus 124 ~~~~~~~l~~~~~~~~~~g~~~~A~------~~~~~al~~~p~~ 161 (568)
T 2vsy_A 124 EPYITAQLLNWRRRLCDWRALDVLS------AQVRAAVAQGVGA 161 (568)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHH------HHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhhccccHHHHH------HHHHHHHhcCCcc
Confidence 999999999999999 8888887 6666666665553
No 56
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.78 E-value=1.1e-18 Score=132.94 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-------NPV-----YYCNRAASNNKLKNYKLALRDCQIAIKI- 152 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~~- 152 (314)
...+..+...|+.++..|+|++|+..|+++|+++|+ +.. +|.++|.++..+|+|++|+.+|+++|++
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 346778999999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ------CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 153 ------DPHYAKAY----GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 153 ------~p~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
+|+++.+| +++|.++..+|++++|+.+|+++++++|++..+...+..+...
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~ 148 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEV 148 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999999987666555555443
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=1e-17 Score=137.88 Aligned_cols=156 Identities=20% Similarity=0.183 Sum_probs=147.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
..|.....+..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus 52 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 2q7f_A 52 ENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYML 131 (243)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 44556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
|.++...|++++|+..++++++.+|++..++..++.++...|++++|. ..+..+....+.++..+..++.++..
T Consensus 132 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~la~~~~~ 205 (243)
T 2q7f_A 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL------SQFAAVTEQDPGHADAFYNAGVTYAY 205 (243)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 88888888888999999999888766
Q ss_pred CC
Q psy4130 244 PG 245 (314)
Q Consensus 244 ~~ 245 (314)
.+
T Consensus 206 ~~ 207 (243)
T 2q7f_A 206 KE 207 (243)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 58
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.78 E-value=5.4e-18 Score=137.29 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCN----------------RAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~ 151 (314)
.++.+...|..++..|++++|+..|+++++.+|+++.+|+. +|.+|...|++++|+.+|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccccc
Q psy4130 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 152 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 209 (314)
++|+++.+++.+|.++...|++++|+.+|+++++++|+++.++.++|.++...++.+.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999999999999999999999999999999999988776543
No 59
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.77 E-value=2.5e-18 Score=141.00 Aligned_cols=151 Identities=12% Similarity=0.029 Sum_probs=134.8
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+..|+++++..| .++. ...+++.+|.+++..|+|
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p---~~~~--------------------------------~~~a~~~lg~~~~~~~~~ 57 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYP---FGPY--------------------------------SQQVQLDLIYAYYKNADL 57 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT---TSTT--------------------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CChH--------------------------------HHHHHHHHHHHHHhcCCH
Confidence 34568999999999999999999 3321 245799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHH---HHHHHHHHHHH------------------ccCHHHHHHHHHHHHHhCCCcHHHH----
Q psy4130 106 EQAVIEYSKAIDCDNSNPV---YYCNRAASNNK------------------LKNYKLALRDCQIAIKIDPHYAKAY---- 160 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~~~~~al~~~p~~~~~~---- 160 (314)
++|+..|+++++.+|+++. +++.+|.++.. .|++++|+..|+++++..|+++.++
T Consensus 58 ~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~ 137 (225)
T 2yhc_A 58 PLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK 137 (225)
T ss_dssp HHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence 9999999999999999864 78999999886 5799999999999999999987554
Q ss_pred -------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcccccCC
Q psy4130 161 -------------GRMGLAYTQMNDYKAALEAYTKAAELDPNDP---LYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 161 -------------~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.+|.++...|++++|+..|+++++..|+++ .++..++.++..+|++++|.
T Consensus 138 ~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~ 204 (225)
T 2yhc_A 138 RLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAE 204 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHH
Confidence 6789999999999999999999999999986 68999999999999999996
No 60
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=6.2e-19 Score=162.11 Aligned_cols=211 Identities=12% Similarity=0.034 Sum_probs=175.2
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
.|......|++++|+.+|+++++.+|+ ......++.++...+.. .+.... .+.....|..+.++..+|.++..
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFF----QKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHH----HHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHH----HHHhccCCCCHHHHHHHHHHHHh
Confidence 344556688999999999999999994 22333444455444432 222221 22234556678899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHH------HHHHHHHHHHHh----------cccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 182 KAAELDPNDPL------YANNMQAAMSNL----------NNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 182 ~al~~~p~~~~------~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
++++++|++.. .+..++.++... |++++|. ..+..+....+.++.++..++.++...+
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~------~~~~~a~~~~p~~~~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI------KLLTKACELDPRSEQAKIGLAQLKLQME 476 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 99999886543 356678889988 9999998 8888999999999999999998877654
No 61
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-18 Score=144.49 Aligned_cols=177 Identities=23% Similarity=0.254 Sum_probs=141.2
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCC------CchhhHHHHHHHhchh-hhhhhhccCCC------------------
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDP------ASNVDIESLFQLYYKD-EVLQWYSNINF------------------ 79 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~------~~~~~l~~~~~~~~~~-~~~~~~~~~~~------------------ 79 (314)
......|++++|+++|+++++++|+... .....++.++...+.. .+.........
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHH
Confidence 3445578888888888888888874421 1223344455444432 22221111110
Q ss_pred ----CCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 80 ----SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 80 ----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
+.....|..+..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 0111567888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELD------PNDPLYANNMQAAM 201 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~ 201 (314)
++.++..+|.++...|++++|+..|+++++++ |++..++..++.++
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999 99988888887653
No 62
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=7.3e-19 Score=160.55 Aligned_cols=211 Identities=15% Similarity=0.064 Sum_probs=177.8
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhh-hhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDE-VLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
.|......|++++|+.+|+++++.+|+ ......++.++...+... +..... +.....|.+...+..+|.++..
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFD----KALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHH----HHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHH----HHhhcCcCCHHHHHHHHHHHHH
Confidence 344556689999999999999999995 233344455665555432 222211 1122345567789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHH------HHHHHHHHHHH---hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCC
Q psy4130 182 KAAELDPNDPL------YANNMQAAMSN---LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 182 ~al~~~p~~~~------~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~ 245 (314)
+++..+|+++. ++..++.++.. .|++++|. ..+..+....+.++..+..++.++...+
T Consensus 397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~------~~~~~a~~~~~~~~~~~~~la~~~~~~g 463 (514)
T 2gw1_A 397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT------NLLEKASKLDPRSEQAKIGLAQMKLQQE 463 (514)
T ss_dssp HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH------HHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 99999998855 99999999999 99999998 8888888888899999988888877643
No 63
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.4e-19 Score=162.04 Aligned_cols=205 Identities=13% Similarity=0.059 Sum_probs=173.4
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
......|++++|+.+|++++..+|++ ......++.++...+.. .+..... +.....|.+...+..+|.++...|
T Consensus 278 ~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 278 LIMADRNDSTEYYNYFDKALKLDSNN-SSVYYHRGQMNFILQNYDQAGKDFD----KAKELDPENIFPYIQLACLAYREN 352 (514)
T ss_dssp HHHHTSSCCTTGGGHHHHHHTTCTTC-THHHHHHHHHHHHTTCTTHHHHHHH----HHHHTCSSCSHHHHHHHHHTTTTT
T ss_pred HHHHHCCCHHHHHHHHHHHhhcCcCC-HHHHHHHHHHHHHhCCHHHHHHHHH----HHHHhChhhHHHHHHHHHHHHHcC
Confidence 34455789999999999999999955 23344556666665543 2222211 112234445678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHH---cCCHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK------AYGRMGLAYTQ---MNDYK 174 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~---~g~~~ 174 (314)
++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.+.. +++.+|.++.. .|+++
T Consensus 353 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 9999999999999999999999999999999999999999999999999998855 99999999999 99999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 175 AALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 175 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+|+..|++++..+|++..++..++.++...|++++|. ..+..+....+.+++++..+...
T Consensus 433 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI------TLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH------HHHHHHHHhccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 88889999988888887766543
No 64
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-17 Score=123.75 Aligned_cols=124 Identities=34% Similarity=0.481 Sum_probs=118.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
...+.....++.+|.++...|++++|+..|++++..+|.+..++.++|.++...|++++|+.+++++++.+|.++.+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 206 (314)
+|.++...|++++|+..|++++.++|.+..++..++.++...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988764
No 65
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.76 E-value=3.6e-17 Score=131.19 Aligned_cols=130 Identities=26% Similarity=0.310 Sum_probs=123.2
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHccCHHHHHHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------VYYCNRAASNNKLKNYKLALRD 145 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~ 145 (314)
....+..+..+..+|..++..|+|++|+..|++++.+.|.++ .++.++|.++..+|++++|+.+
T Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 110 (198)
T 2fbn_A 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 456677889999999999999999999999999999999887 8999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 146 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus 111 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998875
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.76 E-value=2.4e-17 Score=137.94 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=138.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---H
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---A 157 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~ 157 (314)
..+..+..++.+|..++..|+|++|+..|++++..+|.+ +.+++.+|.+|..+|++++|+..|+++++.+|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 344567899999999999999999999999999999999 8999999999999999999999999999998854 6
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcccccCCC
Q psy4130 158 KAYGRMGLAYTQ--------MNDYKAALEAYTKAAELDPNDPLYA-----------------NNMQAAMSNLNNSSSASG 212 (314)
Q Consensus 158 ~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~A~~ 212 (314)
.+++.+|.++.. .|++++|+..|+++++.+|+++.+. +.+|.++...|++++|+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~- 168 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA- 168 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH-
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH-
Confidence 899999999999 9999999999999999999986665 88899999999999999
Q ss_pred CCCCcchHHHHHHhccCCh---HHHHHHHHhhcC
Q psy4130 213 SGGVFPGLSEMSTKVLSDP---SIQQVFGELFAN 243 (314)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~p---~~~~~l~~~~~~ 243 (314)
..+..++...|.++ +.+..++.++..
T Consensus 169 -----~~~~~~l~~~p~~~~~~~a~~~l~~~~~~ 197 (261)
T 3qky_A 169 -----VTYEAVFDAYPDTPWADDALVGAMRAYIA 197 (261)
T ss_dssp -----HHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 88889888888854 566777766554
No 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.8e-17 Score=137.49 Aligned_cols=154 Identities=19% Similarity=0.130 Sum_probs=137.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK--IDPHYAKAYG 161 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~ 161 (314)
..|..+.++..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++. .+|.+..++.
T Consensus 66 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 145 (252)
T 2ho1_A 66 IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFE 145 (252)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHH
Confidence 44566788999999999999999999999999999999999999999999999999999999999999 8888899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
.+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|. ..+..+....+.++..+..+..++
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~~~~~~~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR------QYYDLFAQGGGQNARSLLLGIRLA 219 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 777787777788888877777776
Q ss_pred cC
Q psy4130 242 AN 243 (314)
Q Consensus 242 ~~ 243 (314)
..
T Consensus 220 ~~ 221 (252)
T 2ho1_A 220 KV 221 (252)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 68
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.75 E-value=2.5e-18 Score=131.55 Aligned_cols=124 Identities=14% Similarity=0.143 Sum_probs=115.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy4130 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188 (314)
Q Consensus 109 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (314)
...|++++.++|.+..+++.+|.++...|++++|+..|++++.++|.++.+|+.+|.++...|++++|+.+|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
+++.+++++|.++..+|++++|. ..+..+....+.+|+......
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~ 130 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAE------SGLFLAQELIANXPEFXELST 130 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHTTCGGGHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHH------HHHHHHHHHCcCCCcchHHHH
Confidence 99999999999999999999998 888888888888886544333
No 69
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=6e-17 Score=131.40 Aligned_cols=156 Identities=8% Similarity=-0.053 Sum_probs=129.6
Q ss_pred ChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCcHH
Q psy4130 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQIAIK--IDPHYAK 158 (314)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--~~p~~~~ 158 (314)
....|..+..+..+|.++...|++++|+..|++++..+|.+..++..+|.++... |++++|+..+++++. .+|.+..
T Consensus 35 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 114 (225)
T 2vq2_A 35 LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI 114 (225)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHH
T ss_pred HHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHH
Confidence 3455666778888888888888888888888888888888888888888888888 888888888888888 6677788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc-CChHHHHHH
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL-SDPSIQQVF 237 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~p~~~~~l 237 (314)
+++.+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|. ..+..+....+ .++..+..+
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~~~ 188 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD------YYFKKYQSRVEVLQADDLLLG 188 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCCHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888887 77777777777 777777666
Q ss_pred HHhhcC
Q psy4130 238 GELFAN 243 (314)
Q Consensus 238 ~~~~~~ 243 (314)
..++..
T Consensus 189 ~~~~~~ 194 (225)
T 2vq2_A 189 WKIAKA 194 (225)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655443
No 70
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.75 E-value=1.1e-16 Score=123.81 Aligned_cols=128 Identities=27% Similarity=0.380 Sum_probs=120.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.....+..+..+|.+++..|++++|+..|++++..+|.++.++.++|.++...|++++|+.++++++.++|.++.+++.+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhcccccCC
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA--MSNLNNSSSAS 211 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~ 211 (314)
|.++...|++++|+.+|+++++++|++..++..++.+ +...|++++|.
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988665555 77889998886
No 71
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.75 E-value=3.3e-17 Score=150.55 Aligned_cols=195 Identities=13% Similarity=0.106 Sum_probs=156.7
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCC------chhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPA------SNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~------~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
..+++++|+.+|+++++.+|++... ....++.++...+.. .+.... .+.....|. ...+..+|.++..
T Consensus 214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~----~~~~~~~~~-~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL----QESINLHPT-PNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCCC-HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH----HHHHhcCCC-chHHHHHHHHHHH
Confidence 4578999999999999999943211 111222333333322 222221 112233444 6789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|+
T Consensus 289 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
++++.+|+++.++..++.++...|++++|. ..+..+....+.++..+
T Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 369 ETKLKFPTLPEVPTFFAEILTDRGDFDTAI------KQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHHHHCTTCTHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHCSSCS
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHH------HHHHHHHHcCCcchhhH
Confidence 999999999999999999999999999998 77777777766665543
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.75 E-value=3.4e-17 Score=128.63 Aligned_cols=152 Identities=16% Similarity=0.152 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
.....+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
+...|++++|+..+++++..+|.+..++..++.++...|++++|. ..+..+....+.++..+..++.++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI------DSFKIALGLRPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH------HHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999998 888888888888999888888886653
No 73
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.74 E-value=2.4e-17 Score=123.75 Aligned_cols=124 Identities=27% Similarity=0.310 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
+..+..++.+|.+++..|+|++|+..|++++..+|.++.+++++|.++...|++++|+.+++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhccccc
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~ 209 (314)
++...|++++|+..|+++++++|+ +..++..+..+........+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e 134 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 134 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 77888888888776654443
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=2e-17 Score=142.11 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=160.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCchhhH--HHHHHHh-------ch--------hhhhhhhccCCCCCCh-hhHHHHHHHHHH
Q psy4130 34 EVAVECLCKAYDIPDNIDPASNVDI--ESLFQLY-------YK--------DEVLQWYSNINFSPTE-EVKIEAEKYKNL 95 (314)
Q Consensus 34 ~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~~-------~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 95 (314)
++|+..|++++..+| .++..++ +.++... +. .++... +.+++. ..|.....|..+
T Consensus 33 ~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~----~~rAl~~~~p~~~~~~~~~ 105 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI----YERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH----HHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH----HHHHHHHhCcccHHHHHHH
Confidence 799999999999999 5544444 3344321 22 122222 122333 366778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNSNPV-YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ-MNDY 173 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~ 173 (314)
|..+...|++++|+..|+++++.+|.++. +|.++|.++...|++++|+..|+++++.+|.+..+|...+..... .|++
T Consensus 106 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999987 999999999999999999999999999999998888877666443 7999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc--c--CChHHHHHHHHhhcC
Q psy4130 174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV--L--SDPSIQQVFGELFAN 243 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~--~~p~~~~~l~~~~~~ 243 (314)
++|+..|+++++.+|+++.+|..++.++...|++++|. ..+..+.... + ..+.+|..+..+...
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~------~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR------VLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHH------HHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH------HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 7777777742 2 356788888777654
No 75
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=9e-17 Score=136.96 Aligned_cols=148 Identities=12% Similarity=-0.007 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH-
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG- 164 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg- 164 (314)
|.++.+++.+|.++...|++++|+..|++ |.++.++..+|.++..+|++++|+..++++++.+|++.......+
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~ 172 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAW 172 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHH
Confidence 55677788888888888888888888877 788888899999999999999999999999999998865444333
Q ss_pred -HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 165 -LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 165 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.++...|++++|+..|+++++.+|+++.++.++|.++..+|++++|. ..+..+....|.+|+.+..++.++..
T Consensus 173 ~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~------~~l~~al~~~p~~~~~l~~l~~~~~~ 246 (291)
T 3mkr_A 173 VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE------GVLQEALDKDSGHPETLINLVVLSQH 246 (291)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 23334588999999999999999999999999999999999999998 88999999999999998888877665
Q ss_pred C
Q psy4130 244 P 244 (314)
Q Consensus 244 ~ 244 (314)
.
T Consensus 247 ~ 247 (291)
T 3mkr_A 247 L 247 (291)
T ss_dssp T
T ss_pred c
Confidence 3
No 76
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.74 E-value=1.5e-17 Score=130.98 Aligned_cols=132 Identities=10% Similarity=0.028 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN-KLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
.++.+++.+|.++...|++++|+..|++++..+| ++..+..++.+.. ..++..+|+..++++++++|+++.+++.+|.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~ 116 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV 116 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456899999999999999999999999999999 8877766665533 3345556899999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
++...|++++|+..|+++++.+|+. ..++..++.++..+|+.++|. ..+...+.
T Consensus 117 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~------~~y~~al~ 172 (176)
T 2r5s_A 117 QYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA------SKYRRQLY 172 (176)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH------HHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH------HHHHHHHH
Confidence 9999999999999999999999975 569999999999999999997 66655544
No 77
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.73 E-value=2.8e-17 Score=148.87 Aligned_cols=133 Identities=23% Similarity=0.269 Sum_probs=122.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHH
Q psy4130 79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---------------PVYYCNRAASNNKLKNYKLAL 143 (314)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~ 143 (314)
.......+..+..+..+|..++..|+|++|+..|++++.++|.+ ..+|+++|.||.++|+|++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34456778899999999999999999999999999999999998 689999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 144 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.+|++++.++|+++.+|+++|.++..+|++++|+..|+++++++|++..++..++.++..+++++++.
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998874
No 78
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.73 E-value=2.9e-16 Score=113.91 Aligned_cols=115 Identities=27% Similarity=0.444 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
.+..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 202 (314)
...|++++|+..|+++++.+|+++.++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999988753
No 79
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.73 E-value=4.3e-17 Score=120.21 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++++|+++.+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH
Q psy4130 171 NDYKAALEAYTKAAELDPNDPL 192 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~ 192 (314)
|++++|+..|+++++++|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999998754
No 80
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.73 E-value=2.5e-16 Score=116.77 Aligned_cols=131 Identities=29% Similarity=0.369 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
.|++++|+..+++++...|.+..++..++.++...|++++|. ..+..+...
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~------~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI------EYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH------HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH------HHHHHHHcc
Confidence 999999999999999999999999999999999999999997 555555443
No 81
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.72 E-value=5.1e-16 Score=113.69 Aligned_cols=117 Identities=34% Similarity=0.485 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
+..++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
..|++++|+..|++++..+|+++.++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987754
No 82
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.72 E-value=1.5e-17 Score=126.15 Aligned_cols=125 Identities=14% Similarity=0.145 Sum_probs=114.0
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..|++++..+|.+...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 190 DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
++.+++++|.++..+|++++|. ..+..+....+.+|+.+.....+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAE------SGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHTCGGGHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCcchHHHHHHH
Confidence 9999999999999999999998 88888888888888766554444
No 83
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.72 E-value=5e-17 Score=138.29 Aligned_cols=131 Identities=13% Similarity=0.026 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
+.+++.+|.++...|++++|+..|++++..+|+....+...+..+...++.++|+..+++++..+|+++.+++.+|.++.
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 55788888888888888888888888888888766666777777888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 169 QMNDYKAALEAYTKAAELDPND--PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
..|++++|+..|+++++.+|++ ..++.+++.++..+|+.++|. ..++....
T Consensus 231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~------~~~r~al~ 283 (287)
T 3qou_A 231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA------SXYRRQLY 283 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH------HHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH------HHHHHHHH
Confidence 8888888888888888888887 778888888888888888886 55555444
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=5.3e-17 Score=138.43 Aligned_cols=138 Identities=13% Similarity=0.059 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCc--
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKL-KNYKLALRDCQIAIKIDPHY-- 156 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~-- 156 (314)
+..+.++..+|.++...|++++|+.+|++++.+.|.. ..++.++|.+|... |++++|+.+|++++.+.|..
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 3457889999999999999999999999999987653 46899999999996 99999999999999998754
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 157 ----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL-------YANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 157 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
..++.++|.++..+|++++|+.+|++++++.|++.. ++.+++.++..+|++++|. ..+..+..
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~ 227 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA------RTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH------HHHHGGGC
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHh
Confidence 567999999999999999999999999999987643 6789999999999999997 55554444
Q ss_pred hccC
Q psy4130 226 KVLS 229 (314)
Q Consensus 226 ~~~~ 229 (314)
..+.
T Consensus 228 l~p~ 231 (292)
T 1qqe_A 228 EDPN 231 (292)
T ss_dssp C---
T ss_pred hCCC
Confidence 4443
No 85
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.71 E-value=1.3e-16 Score=125.41 Aligned_cols=134 Identities=15% Similarity=0.167 Sum_probs=111.6
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+..|+++++.+| .+ +.++..+|.++...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p---~~-----------------------------------~~~~~~lg~~~~~~~~~ 60 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANP---QN-----------------------------------SEQWALLGEYYLWQNDY 60 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCC---SC-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred hhhhccCHHHHHHHHHHHHHhCC---Cc-----------------------------------HHHHHHHHHHHHHcCCH
Confidence 34557888888888888888888 33 34688899999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAAS-NNKLKNY--KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
++|+.+|++++..+|.++.++..+|.+ +...|++ ++|+..+++++..+|+++.+++.+|.++...|++++|+..|++
T Consensus 61 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 61 SNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK 140 (177)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999999999999999999999999 7888998 9999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHH
Q psy4130 183 AAELDPNDPLYANNM 197 (314)
Q Consensus 183 al~~~p~~~~~~~~l 197 (314)
+++++|++......+
T Consensus 141 al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 141 VMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHTCCTTSCHHHHH
T ss_pred HHhhCCCCccHHHHH
Confidence 999999876544333
No 86
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-16 Score=119.39 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=113.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA 159 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 159 (314)
...+..+..++.+|..++..|++++|+..|+++++.+|++ ..++.++|.++...|++++|+.++++++.++|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3445678899999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
++.+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988887543
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.70 E-value=1.4e-16 Score=135.50 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
|.....+..+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..+++++..+|+....+...+.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC--hHHHHHHHHhhcC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD--PSIQQVFGELFAN 243 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--p~~~~~l~~~~~~ 243 (314)
.+...++.++|+..|+++++.+|+++.++++++.++...|++++|. ..+..+.+..|.+ +..+..+..++..
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~------~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEAL------ELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH------HHHHHHHhcccccccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999 9999999998887 7788888888766
Q ss_pred CC
Q psy4130 244 PG 245 (314)
Q Consensus 244 ~~ 245 (314)
.+
T Consensus 268 ~g 269 (287)
T 3qou_A 268 LG 269 (287)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 88
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.70 E-value=8e-17 Score=126.59 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=121.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDY--KA 175 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~--~~ 175 (314)
+...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|+++++++|.++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
|+..|+++++.+|+++.++..++.++...|++++|. ..+..+....+.++....++..+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~~~~i 158 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAI------ELWQKVMDLNSPRINRTQLVESI 158 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTCCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHH------HHHHHHHhhCCCCccHHHHHHHH
Confidence 999999999999999999999999999999999998 88888888888877665555443
No 89
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=8.1e-17 Score=138.27 Aligned_cols=189 Identities=12% Similarity=0.020 Sum_probs=151.8
Q ss_pred hcHHHHHHHHHHHcC-CCCCCCCCchh--hHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHH-HHHHHHHHHHhcCCH
Q psy4130 31 EGIEVAVECLCKAYD-IPDNIDPASNV--DIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAE-KYKNLGNTAMQQDKP 105 (314)
Q Consensus 31 ~~~~~Ai~~~~~al~-~~p~~~~~~~~--~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~ 105 (314)
+.+++|+.+|+++++ ++| .+..+ .++.++...+.. .+...+... ....|.++. +|..+|.++...|++
T Consensus 78 ~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~~~~~~~~~~~~~ 150 (308)
T 2ond_A 78 LFSDEAANIYERAISTLLK---KNMLLYFAYADYEESRMKYEKVHSIYNRL----LAIEDIDPTLVYIQYMKFARRAEGI 150 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTSSSSCTHHHHHHHHHHHHHHHCH
T ss_pred cchHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhccccCccHHHHHHHHHHHHhcCH
Confidence 335999999999999 799 55433 444455554432 222222111 222333444 899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNK-LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
++|+..|+++++.+|.+..+|...+.+... .|++++|+..|+++++.+|+++.+|..++.++...|++++|+..|++++
T Consensus 151 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999888877766543 7999999999999999999999999999999999999999999999999
Q ss_pred hh---CC-CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 185 EL---DP-NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 185 ~~---~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
.. +| +...+|..++..+...|+.++|. ..+..+.+..|.+++
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~------~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASIL------KVEKRRFTAFREEYE 276 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH------HHHHHHHHHTTTTTS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHcccccc
Confidence 95 55 37889999999999999999997 777777777787654
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=2.7e-16 Score=128.77 Aligned_cols=151 Identities=11% Similarity=0.071 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---HHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK---AYG 161 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~ 161 (314)
.+..++.+|..++..|+|++|+..|++++..+|.++ .+++.+|.+|...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 356799999999999999999999999999998864 68999999999999999999999999999999864 899
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhcc
Q psy4130 162 RMGLAYTQ------------------MNDYKAALEAYTKAAELDPNDPLYA-----------------NNMQAAMSNLNN 206 (314)
Q Consensus 162 ~lg~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~ 206 (314)
.+|.++.. .|++++|+..|+++++.+|+++.++ ..+|.++...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999886 5799999999999999999987554 578889999999
Q ss_pred cccCCCCCCCcchHHHHHHhccCCh---HHHHHHHHhhcCC
Q psy4130 207 SSSASGSGGVFPGLSEMSTKVLSDP---SIQQVFGELFANP 244 (314)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~~~~~p---~~~~~l~~~~~~~ 244 (314)
+++|+ ..+..+++..|.+| +.+..++.++...
T Consensus 163 ~~~A~------~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 197 (225)
T 2yhc_A 163 WVAVV------NRVEGMLRDYPDTQATRDALPLMENAYRQM 197 (225)
T ss_dssp HHHHH------HHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHH------HHHHHHHHHCcCCCccHHHHHHHHHHHHHc
Confidence 99999 99999999999887 4566666666554
No 91
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.70 E-value=1.2e-15 Score=128.30 Aligned_cols=194 Identities=18% Similarity=0.171 Sum_probs=159.5
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHH----hch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQL----YYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
....+++++|+++|+++++.++ ......++.++.. ..+ ..+..+...... ..++.+++.+|.++..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD------LNYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHhC
Confidence 3457899999999999998444 4556677777776 443 233333222211 1267899999999999
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----
Q psy4130 102 ----QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ---- 169 (314)
Q Consensus 102 ----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---- 169 (314)
.+++++|+.+|+++++.+ ++.+++++|.+|.. .+++++|+.+|+++++.+ ++.+++.+|.++..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred CCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCC
Confidence 999999999999999974 88999999999999 999999999999999986 68899999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.+++++|+.+|+++++.+ ++.++..++.++.. .+++++|. ..+..++.. .++.....++.++..
T Consensus 163 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~------~~~~~a~~~--~~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 163 PKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEAL------ARYSKACEL--ENGGGCFNLGAMQYN 230 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHH------HHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHH------HHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 999999999999999874 68899999999999 99999997 666666654 457788888888776
No 92
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.70 E-value=6.3e-16 Score=129.51 Aligned_cols=197 Identities=10% Similarity=-0.074 Sum_probs=120.3
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 101 (314)
.|......|++++|+.+|+++++.+|++ ......++.++...+.. .+.... .+.....|.++.++..+|.++..
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~----~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIRPDM-PEVFNYLGIYLTQAGNFDAAYEAF----DSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHccCHHHHHHHH----HHHHhcCccccHHHHHHHHHHHH
Confidence 3445566899999999999999999943 12233344444444332 111111 11122344445666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.|++++|+..|+++++.+|.+...+...+.+ ...|++++|+..+.+++...|.+...+. ++.++...++.++|+..++
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLK 201 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHH
Confidence 6666666666666666666666544444433 4446666666666666666666544433 5555555666666666666
Q ss_pred HHHhhCCCC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 182 KAAELDPND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 182 ~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
+++...|.. ..++..+|.++...|++++|. ..+..+....+.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT------ALFKLAVANNVHNFV 250 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCCTTCH
T ss_pred HHhcccccccccccHHHHHHHHHHHHcCCHHHHH------HHHHHHHhCCchhHH
Confidence 666555532 577888888888888888887 666666665554443
No 93
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.69 E-value=7.4e-16 Score=113.92 Aligned_cols=121 Identities=31% Similarity=0.396 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-------AKA 159 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~ 159 (314)
..+..++.+|..+...|++++|+..|++++..+|.++.++.++|.++...|++++|+.++++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999877 899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130 160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208 (314)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 208 (314)
++.+|.++...|++++|+.+|++++..+| ++..+..++.+...+++..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 129 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQE 129 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 6889999999988776543
No 94
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=142.46 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=160.9
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCC------CCC--chhhHHHHHHHhchhhhh-hhhccCC---C-CCChhhHHHH
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNI------DPA--SNVDIESLFQLYYKDEVL-QWYSNIN---F-SPTEEVKIEA 89 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~------~~~--~~~~l~~~~~~~~~~~~~-~~~~~~~---~-~~~~~~~~~~ 89 (314)
.|.....+|++++|+++|++++++.+.. +.. .+.+++.+|...++...+ ....... . ......+..+
T Consensus 57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~ 136 (472)
T 4g1t_A 57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP 136 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence 3455567899999999999998762211 122 123456666666543222 2111000 0 0011122345
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQ--QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK---LKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 90 ~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
..+..+|.++.. .++|++|+.+|+++++++|+++.++.+++.++.. .+++++|+..++++++++|+++.++..+|
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 678888877765 5679999999999999999999999999988655 46778999999999999999999999999
Q ss_pred HHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 165 LAYTQM----NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 165 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
..+... +++++|+..|++++.++|.+..++.++|.++...|++++|. ..+..+.+..|.++.++..++.+
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAI------ELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHH------HHHHHHHHhCCChHHHHHHHHHH
Confidence 877654 57889999999999999999999999999999999999999 88999999999999888777655
Q ss_pred h
Q psy4130 241 F 241 (314)
Q Consensus 241 ~ 241 (314)
+
T Consensus 291 y 291 (472)
T 4g1t_A 291 Y 291 (472)
T ss_dssp H
T ss_pred H
Confidence 3
No 95
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=5.1e-17 Score=147.19 Aligned_cols=191 Identities=12% Similarity=-0.038 Sum_probs=147.4
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc---h-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh----
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY---K-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ---- 101 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---- 101 (314)
.+++++|+++|+++++++|+++ .....++.++.... . ..+... +.++...+|.++.++..+|..+..
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~-~~~~~~~~~~~~l~~~~~~~~al~~----~~~al~l~p~~~~~~~~l~~~~~~~~~~ 225 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNP-EFTSGLAIASYRLDNWPPSQNAIDP----LRQAIRLNPDNQYLKVLLALKLHKMREE 225 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHSCCCCCTHHH----HHHHHHHCSSCHHHHHHHHHHHHHCC--
T ss_pred cccHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCchHHHHHHHH----HHHHhhcCCcchHHHHHHHHHHHHHHhh
Confidence 4679999999999999999442 12223333332221 1 111111 122344566677788888876654
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----------
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM----------- 170 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------- 170 (314)
.+++++|+.+|++++..+|.++.++.++|.+|...|++++|+..++++++.+|+++.++..+|.+|...
T Consensus 226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999999988653
Q ss_pred --------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 171 --------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 171 --------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
+.+++|+..|+++++++|.+..++..+|.++...|++++|. ..+..++...+.+.
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~------~~~~kaL~~~~~~~ 368 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE------YYFQKEFSKELTPV 368 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH------HHHHHHHHSCCCHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH------HHHHHHHhcCCCCh
Confidence 34788999999999999999999999999999999999998 77777766555443
No 96
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.69 E-value=1.2e-15 Score=113.05 Aligned_cols=117 Identities=14% Similarity=0.045 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRM 163 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 163 (314)
..++.+|.+++..|+|++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578899999999999999999999999999988 799999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 206 (314)
|.++..+|++++|+..|++++...|+++.+...+..+....++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999887777666554443
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.69 E-value=5.1e-16 Score=125.44 Aligned_cols=144 Identities=20% Similarity=0.145 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
....++.+|..++..|++++|+..|++++ +| ++.+++++|.++...|++++|+..|++++.++|.++.+++.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 45568899999999999999999999985 34 7889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 168 TQMNDYKAALEAYTKAAELDPNDP----------------LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
...|++++|+..|++++++.|++. .++.++|.++...|++++|. ..+..+....+.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE------EQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH------HHHHHHHHcCcccc
Confidence 999999999999999999888876 89999999999999999998 77777777666543
Q ss_pred --HHHHHHHHh
Q psy4130 232 --SIQQVFGEL 240 (314)
Q Consensus 232 --~~~~~l~~~ 240 (314)
.+...+..+
T Consensus 156 ~~~~~~a~~~~ 166 (213)
T 1hh8_A 156 HSKIDKAMECV 166 (213)
T ss_dssp GGHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 344444444
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.68 E-value=4.6e-16 Score=147.69 Aligned_cols=149 Identities=11% Similarity=-0.069 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAI--------DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK 158 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 158 (314)
.++..++..| ...+++++|+..|++++ ..+|++..+++.+|.++..+|++++|+..|+++++++|+++.
T Consensus 392 ~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 392 TDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp TSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred CCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 3344455544 78899999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHH
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFG 238 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 238 (314)
+|+.+|.++..+|++++|+..|+++++++|++..++.++|.++..+|++++ + ..+..+.+..+.++..+..++
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~------~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-H------KFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-T------CHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-H------HHHHHHHHhCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 9 999999999999999999999
Q ss_pred HhhcCCC
Q psy4130 239 ELFANPG 245 (314)
Q Consensus 239 ~~~~~~~ 245 (314)
.++...+
T Consensus 542 ~~~~~~g 548 (681)
T 2pzi_A 542 RARSAEG 548 (681)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 8876654
No 99
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.8e-16 Score=115.07 Aligned_cols=116 Identities=20% Similarity=0.137 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130 120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199 (314)
Q Consensus 120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 199 (314)
|..+..+..+|.++...|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCCCcchHHHHHHhc------cCChHHHHHHHHhh
Q psy4130 200 AMSNLNNSSSASGSGGVFPGLSEMSTKV------LSDPSIQQVFGELF 241 (314)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~p~~~~~l~~~~ 241 (314)
++..+|++++|. ..+..+.... +.++.++..+..+.
T Consensus 81 ~~~~~~~~~~A~------~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 81 AQIAVKEYASAL------ETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHTTCHHHHH------HHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHH------HHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999999999998 8888888888 88888887777654
No 100
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.68 E-value=4.7e-16 Score=136.88 Aligned_cols=129 Identities=23% Similarity=0.372 Sum_probs=121.6
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID----------------CDNSNPVYYCNRAASNNKLKNYKLALRDC 146 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 146 (314)
......+..+..+|..++..|+|++|+..|+++++ .+|.+..+|.++|.+|..+|++++|+.++
T Consensus 217 ~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 34456678899999999999999999999999999 77888899999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 147 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++.+++.
T Consensus 297 ~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 297 LEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887764
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.68 E-value=1.3e-16 Score=125.44 Aligned_cols=150 Identities=13% Similarity=0.041 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYT 168 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 168 (314)
...+..+|..+...|++++|+..|+++++.+|+++.+++++|.++...|++++|+..+++++..+| ++..+..++.+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 346888999999999999999999999999999999999999999999999999999999999999 8877766665533
Q ss_pred -HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC--hHHHHHHHHhhcCCC
Q psy4130 169 -QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD--PSIQQVFGELFANPG 245 (314)
Q Consensus 169 -~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--p~~~~~l~~~~~~~~ 245 (314)
..++..+|+..|+++++++|+++.+++.++.++...|++++|. ..+..+.+..|.. +..+..++.++...+
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~------~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEAL------ELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHH------HHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 3344456899999999999999999999999999999999998 8888888777654 568888887766543
No 102
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.67 E-value=1.2e-16 Score=139.15 Aligned_cols=145 Identities=23% Similarity=0.231 Sum_probs=100.0
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHccCHHHHH
Q psy4130 81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP-----------------VYYCNRAASNNKLKNYKLAL 143 (314)
Q Consensus 81 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~ 143 (314)
.....+..+..++.+|..++..|+|++|+..|++++.+.|.+. .+|+++|.||..+|+|++|+
T Consensus 171 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~ 250 (338)
T 2if4_A 171 TVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAI 250 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456678899999999999999999999999999999999877 48999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcccccCCCCCCCcchHHH
Q psy4130 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN-LNNSSSASGSGGVFPGLSE 222 (314)
Q Consensus 144 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~ 222 (314)
.+|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+... .+..+++. ..+..
T Consensus 251 ~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~------~~~~~ 324 (338)
T 2if4_A 251 GHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK------EMYKG 324 (338)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 999999999999999999999999999999999999999999999999999999998554 45555555 44445
Q ss_pred HHHhccCCh
Q psy4130 223 MSTKVLSDP 231 (314)
Q Consensus 223 ~~~~~~~~p 231 (314)
++...+.++
T Consensus 325 ~l~~~p~~~ 333 (338)
T 2if4_A 325 IFKGKDEGG 333 (338)
T ss_dssp ---------
T ss_pred hhCCCCCCC
Confidence 555444444
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.67 E-value=1.1e-15 Score=123.41 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=118.1
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+++|++++ +| + +.+++.+|.++...|++
T Consensus 15 ~~~~~~~~~~A~~~~~~a~--~~----~-----------------------------------~~~~~~lg~~~~~~g~~ 53 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQ--DP----H-----------------------------------SRICFNIGCMYTILKNM 53 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSS--SC----C-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHhCCHHHHHHHHHHHc--CC----C-----------------------------------hHHHHHHHHHHHHcCCH
Confidence 3446889999999999885 33 1 24799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH----------------HHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA----------------KAYGRMGLAYTQ 169 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~ 169 (314)
++|+..|++++..+|.++.+++++|.++...|++++|+.+|++++++.|.+. .+++.+|.++..
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 54 TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888766 999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 170 MNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
.|++++|+..|+++++++|++.......+..
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 164 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEPRHSKIDKAME 164 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCcccccchHHHHHH
Confidence 9999999999999999999875544444333
No 104
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.66 E-value=4.1e-16 Score=118.37 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=91.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY----------KLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
+.+.|++|+..|+++++++|.++.+|+++|.++...+++ ++|+..|++|++++|++..+|+++|.+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 456799999999999999999999999999999999875 5999999999999999999999999999988
Q ss_pred C-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 171 N-----------DYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 171 g-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
| ++++|+.+|++|++++|++..++..+..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5 89999999999999999987766665544
No 105
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.3e-15 Score=128.04 Aligned_cols=188 Identities=21% Similarity=0.181 Sum_probs=152.7
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHH----hch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh---
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQL----YYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ--- 101 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 101 (314)
.+++++|+.+|+++++.+. ......++.+|.. ..+ ..+..+...... ..++.+++.+|.++..
T Consensus 55 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD------LKYAEGCASLGGIYHDGKV 125 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH------cCCccHHHHHHHHHHcCCC
Confidence 8899999999999998864 5666777887776 443 233333222111 1367899999999999
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q psy4130 102 -QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MND 172 (314)
Q Consensus 102 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 172 (314)
.+++++|+.+|+++++.+ ++.+++++|.+|.. .+++++|+.+|+++++. .++.+++.+|.++.. .++
T Consensus 126 ~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~ 201 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN 201 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC
T ss_pred cccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999976 68889999999999 99999999999999988 468999999999999 999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 173 YKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+++|+.+|+++++.+| +.++..++.++.. .+++++|. ..+..+...-+ +.....+..+
T Consensus 202 ~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~------~~~~~a~~~~~--~~a~~~l~~~ 263 (273)
T 1ouv_A 202 FKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAI------ENFKKGCKLGA--KGACDILKQL 263 (273)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHH------HHHHHHHHHTC--HHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHH------HHHHHHHHcCC--HHHHHHHHHH
Confidence 9999999999999876 8899999999999 99999997 66666655533 3334444433
No 106
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.5e-17 Score=138.26 Aligned_cols=193 Identities=16% Similarity=0.087 Sum_probs=147.5
Q ss_pred cchhhcHHHHHHHHHHHcCC--------CCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCC----ChhhHHHHHHHH
Q psy4130 27 AESKEGIEVAVECLCKAYDI--------PDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSP----TEEVKIEAEKYK 93 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~--------~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~ 93 (314)
....|++++|+.+|++++++ .|.. ......++.++...+.. .+........... ....+.....+.
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDV-ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34588999999999999985 3311 11233445565555533 2222211111100 022477888999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcH
Q psy4130 94 NLGNTAMQQDKPEQAVIEYSKAIDCD--------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------DPHYA 157 (314)
Q Consensus 94 ~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~ 157 (314)
.+|.++...|++++|+.+|++++... |....++.++|.++...|++++|+.++++++.+ +|...
T Consensus 116 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 195 (311)
T 3nf1_A 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVA 195 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999874 556678999999999999999999999999998 77778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------------------------------------CC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAEL-------------------------------------------------DP 188 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p 188 (314)
.++..+|.++...|++++|+..|++++++ +|
T Consensus 196 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 275 (311)
T 3nf1_A 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP 275 (311)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc
Confidence 89999999999999999999999999985 35
Q ss_pred CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 189 NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
....++..++.++...|++++|. ..+..+.+.
T Consensus 276 ~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~l 307 (311)
T 3nf1_A 276 TVTTTLKNLGALYRRQGKFEAAE------TLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHH
Confidence 56678888899999999998886 555555443
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.65 E-value=6.1e-15 Score=125.71 Aligned_cols=213 Identities=10% Similarity=0.035 Sum_probs=154.5
Q ss_pred HHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HHHHhc--h-hhhhhhhccCCCCCChhh
Q psy4130 11 SVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIES--LFQLYY--K-DEVLQWYSNINFSPTEEV 85 (314)
Q Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~~~~~--~-~~~~~~~~~~~~~~~~~~ 85 (314)
.+++++...+.. .+..++|+.++.++|.++| +...++..+ ++...+ . .+...+ ....+..+
T Consensus 34 ~~~~~~~a~~~~-------~e~s~~aL~~t~~~L~~nP---~~~taWn~R~~~L~~l~~~~~~eeL~~----~~~~L~~n 99 (306)
T 3dra_A 34 QIMGLLLALMKA-------EEYSERALHITELGINELA---SHYTIWIYRFNILKNLPNRNLYDELDW----CEEIALDN 99 (306)
T ss_dssp HHHHHHHHHHHT-------TCCSHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTCTTSCHHHHHHH----HHHHHHHC
T ss_pred HHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCc---HHHHHHHHHHHHHHHcccccHHHHHHH----HHHHHHHC
Confidence 445555554332 3444789999999999999 443333322 333322 1 111111 12234567
Q ss_pred HHHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCc
Q psy4130 86 KIEAEKYKNLGNTA----MQQ---DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK--LALRDCQIAIKIDPHY 156 (314)
Q Consensus 86 ~~~~~~~~~~g~~~----~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~ 156 (314)
|.+..+|+.++.++ ... +++++++..++++++.+|.+..+|..++.++...+.++ +++.++.++++.+|.+
T Consensus 100 Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N 179 (306)
T 3dra_A 100 EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKN 179 (306)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCC
Confidence 77888888888888 666 78889999999999999999999999999988888888 8899999999999999
Q ss_pred HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc---
Q psy4130 157 AKAYGRMGLAYTQMND------YKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV--- 227 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 227 (314)
..+|..++.++...++ ++++++++.+++..+|+|..+|..++.++...|+..++. ..+..-+-.+
T Consensus 180 ~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~------~~~~~~~~~~~~~ 253 (306)
T 3dra_A 180 NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL------EEFSLQFVDLEKD 253 (306)
T ss_dssp HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG------HHHHHTTEEGGGT
T ss_pred HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH------HHHHHHHHhccCC
Confidence 9999999988888887 888999999999999999999999999988888765554 3333322211
Q ss_pred -cCChHHHHHHHHhhcC
Q psy4130 228 -LSDPSIQQVFGELFAN 243 (314)
Q Consensus 228 -~~~p~~~~~l~~~~~~ 243 (314)
+.++..+..+..++..
T Consensus 254 ~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQ 270 (306)
T ss_dssp EESCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 4566777777777664
No 108
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.65 E-value=2.8e-16 Score=142.99 Aligned_cols=125 Identities=28% Similarity=0.396 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..+..+..+|..++..|+|++|+..|+++++.+|.++.+|.++|.+|..+|++++|+.+++++++++|+++.+++++|.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 83 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhcccccCC
Q psy4130 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA--MSNLNNSSSAS 211 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~A~ 211 (314)
+..+|++++|+..|+++++++|++..++..++.+ +...|++++|+
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 88899999997
No 109
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.65 E-value=3.3e-16 Score=131.36 Aligned_cols=184 Identities=15% Similarity=0.044 Sum_probs=135.3
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCC----CChhhHHHHHHHHHHHHHHHhc
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFS----PTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
.....+++|++.+++++..++.........++.++...+.. .+.......... .....+.....+..+|.++...
T Consensus 19 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (283)
T 3edt_B 19 SAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98 (283)
T ss_dssp SHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 33444555555555555434211012233445566555543 222221111110 0123577889999999999999
Q ss_pred CCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------DPHYAKAYGRMGLA 166 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~ 166 (314)
|++++|+.+|++++.. +|....++.++|.++...|++++|+.++++++.+ +|....++..+|.+
T Consensus 99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999998 4667789999999999999999999999999999 77788999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-------------------------------------------------CCCHHHHHHH
Q psy4130 167 YTQMNDYKAALEAYTKAAELD-------------------------------------------------PNDPLYANNM 197 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~-------------------------------------------------p~~~~~~~~l 197 (314)
+...|++++|+..|++++++. |....++..+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999862 3445678888
Q ss_pred HHHHHHhcccccCC
Q psy4130 198 QAAMSNLNNSSSAS 211 (314)
Q Consensus 198 ~~~~~~~~~~~~A~ 211 (314)
+.++...|++++|.
T Consensus 259 a~~~~~~g~~~~A~ 272 (283)
T 3edt_B 259 GALYRRQGKLEAAH 272 (283)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 88888888888886
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.64 E-value=3.8e-15 Score=110.34 Aligned_cols=125 Identities=32% Similarity=0.461 Sum_probs=115.9
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
...|++++|+..|+++++.+| .+ ...+..+|.++...|++++
T Consensus 12 ~~~~~~~~A~~~~~~~~~~~~---~~-----------------------------------~~~~~~~a~~~~~~~~~~~ 53 (136)
T 2fo7_A 12 YKQGDYDEAIEYYQKALELDP---RS-----------------------------------AEAWYNLGNAYYKQGDYDE 53 (136)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHHTCHHH
T ss_pred HHcCcHHHHHHHHHHHHHcCC---cc-----------------------------------hhHHHHHHHHHHHhcCHHH
Confidence 457899999999999998877 33 2367888999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (314)
|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+
T Consensus 54 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy4130 188 PND 190 (314)
Q Consensus 188 p~~ 190 (314)
|++
T Consensus 134 ~~~ 136 (136)
T 2fo7_A 134 PRS 136 (136)
T ss_dssp TTC
T ss_pred CCC
Confidence 863
No 111
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.64 E-value=6.2e-16 Score=113.11 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=97.1
Q ss_pred hcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDC---DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
..|++++|+..|+++++. +|.++.++.++|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 178 EAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
..|++++...|+++.+......+....+..++.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l~~~ 114 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKLDET 114 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCTTCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877777766666665543
No 112
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.64 E-value=1.2e-15 Score=129.90 Aligned_cols=168 Identities=15% Similarity=0.048 Sum_probs=122.8
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCC-----CchhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHHHH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDP-----ASNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNLGN 97 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~-----~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~ 97 (314)
.+...|++++|+++|++++++.+...+ .....++.+|...+.. ++...+..... .........+..+..+|.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356689999999999999988653311 1233455566665433 22222111100 001112234678999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH-------HHHHH
Q psy4130 98 TAMQQ-DKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK-------AYGRM 163 (314)
Q Consensus 98 ~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~l 163 (314)
++... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|++++.+.|++.. ++.++
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 99999999999999998754 467899999999999999999999999999987643 68899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
|.++..+|++++|+.+|+++++++|+....
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 999999999999999999999999987653
No 113
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.64 E-value=7.8e-17 Score=143.28 Aligned_cols=214 Identities=14% Similarity=0.062 Sum_probs=162.3
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHHHHH
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNLGNT 98 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~ 98 (314)
......|++++|+.+|+++++..|++.. .....++.++...++. .+......... ......+....++..+|.+
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3445689999999999999999994321 1233455555555433 22222111110 0122367888999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHHhC--
Q psy4130 99 AMQQDKPEQAVIEYSKAIDC------DNSNPVYYCNRAASNNKLKN-----------------YKLALRDCQIAIKID-- 153 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~-- 153 (314)
+...|++++|+.+|++++.. .|....++.++|.+|...|+ +++|+.++++++.+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 55667799999999999999 999999999999874
Q ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcccccCCCCCCCcchHHHH
Q psy4130 154 ----PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL------YANNMQAAMSNLNNSSSASGSGGVFPGLSEM 223 (314)
Q Consensus 154 ----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 223 (314)
+....++..+|.++...|++++|+.+|++++++.|.... ++..++.++...|++++|. ..+..+
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~a 289 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA------EHYKRT 289 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH------HHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH------HHHHHH
Confidence 334578999999999999999999999999998775433 8999999999999999998 777666
Q ss_pred HHhccCC------hHHHHHHHHhhcCC
Q psy4130 224 STKVLSD------PSIQQVFGELFANP 244 (314)
Q Consensus 224 ~~~~~~~------p~~~~~l~~~~~~~ 244 (314)
....+.. ...+..++.++...
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLL 316 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 6655533 34555666665543
No 114
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.64 E-value=5.6e-14 Score=120.50 Aligned_cols=164 Identities=10% Similarity=0.017 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND-YKAALEAYT 181 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~ 181 (314)
+++++.+++.++..+|.+..+|+.++.++...+ .+++++.++.++++.+|.+..+|...+.+....|. ++++++++.
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 788999999999999999999999999999998 48999999999999999999999999999999998 699999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHh--------------cccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCCCC
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNL--------------NNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQ 247 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~--------------~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~ 247 (314)
++++.+|.|..+|..++.++..+ +.++++. ..+..++...|.|...|..+..++....+.
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEl------e~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL------ELVQNAFFTDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHhccCc
Confidence 99999999999999999999887 3344555 677788888899999998887777664221
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHhhChH
Q psy4130 248 ATATDGSNTGIQALLNASQQIAAQLEQRNPE 278 (314)
Q Consensus 248 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 278 (314)
. .........++.......++...+|+
T Consensus 244 ~----~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 244 C----ELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp G----GCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred c----ccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 1 11123334455555566666677776
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.64 E-value=6.5e-16 Score=130.96 Aligned_cols=103 Identities=29% Similarity=0.385 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
.+..++.+|..++..|+|++|+..|++++..+|.++.+++++|.+|..+|++++|+..++++++++|+++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 168 TQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
..+|++++|+..|+++++++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999976
No 116
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.63 E-value=2.2e-16 Score=132.43 Aligned_cols=163 Identities=20% Similarity=0.146 Sum_probs=139.7
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
...+++++|+.+|++++++-. .. .....+..+.++..+|.++...|++++
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~---~~---------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 61 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLE---KT---------------------------SGHDHPDVATMLNILALVYRDQNKYKE 61 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHH---HH---------------------------HCSSSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH---Hh---------------------------cCCCCHHHHHHHHHHHHHHHHcccHHH
Confidence 346778888888888876543 10 012346778899999999999999999
Q ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcC
Q psy4130 108 AVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI--------DPHYAKAYGRMGLAYTQMN 171 (314)
Q Consensus 108 A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g 171 (314)
|+..|++++.. +|....++.++|.++...|++++|+..+++++.+ +|....++..+|.++...|
T Consensus 62 A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 62 AAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 99999999987 3566788999999999999999999999999998 5777899999999999999
Q ss_pred CHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 172 DYKAALEAYTKAAEL--------DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 172 ~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
++++|+.+|++++.+ +|....++..++.++...|++++|. ..+..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~~l~~ 198 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE------TLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHH
Confidence 999999999999999 7777889999999999999999997 666666654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=6e-15 Score=136.66 Aligned_cols=171 Identities=9% Similarity=-0.022 Sum_probs=140.9
Q ss_pred hcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC------
Q psy4130 31 EGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK------ 104 (314)
Q Consensus 31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------ 104 (314)
+.-++|++++++++.++| +. ..+|+.++.++...++
T Consensus 43 ~~~eeal~~~~~~l~~nP---~~-----------------------------------~taW~~R~~~l~~l~~~~~~~~ 84 (567)
T 1dce_A 43 ELDESVLELTSQILGANP---DF-----------------------------------ATLWNCRREVLQHLETEKSPEE 84 (567)
T ss_dssp CCSHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHCc---hh-----------------------------------HHHHHHHHHHHHhcccccchhh
Confidence 344788999999999999 44 2356666666666666
Q ss_pred ----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHH
Q psy4130 105 ----PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-DYKAAL 177 (314)
Q Consensus 105 ----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~ 177 (314)
+++++..++++++.+|.+..+|+.++.++...+ ++++++.++.++++++|.+..+|..++.++...| .+++++
T Consensus 85 ~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el 164 (567)
T 1dce_A 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL 164 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHH
Confidence 889999999999999999999999999999998 7799999999999999999999999999999998 889999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccc--------------ccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 178 EAYTKAAELDPNDPLYANNMQAAMSNLNNS--------------SSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--------------~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+++.++++.+|.+..+|..++.++..+++. +++. ..+..++...|.|+..|..++.++..
T Consensus 165 ~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel------~~~~~ai~~~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 165 AFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL------ELVQNAFFTDPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH------HHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHH------HHHHHHHhhCCCCccHHHHHHHHHhc
Confidence 999999999999999999999998886443 3333 55567777788888899988888766
Q ss_pred CC
Q psy4130 244 PG 245 (314)
Q Consensus 244 ~~ 245 (314)
.+
T Consensus 239 ~~ 240 (567)
T 1dce_A 239 AE 240 (567)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 118
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.63 E-value=1.7e-15 Score=133.77 Aligned_cols=182 Identities=14% Similarity=0.049 Sum_probs=138.0
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
|......|++++|+++|++++++.+. ....+..+.++..+|.++...|
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~--------------------------------~~~~~~~a~~~~~lg~~~~~~~ 157 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIF--------------------------------VKDRIEKAEFFFKMSESYYYMK 157 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGG--------------------------------CCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--------------------------------CCCHHHHHHHHHHHHHHHHHcC
Confidence 33445677888888888888776441 1123456778999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHc
Q psy4130 104 KPEQAVIEYSKAIDCDNSN-------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMGLAYTQM 170 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~ 170 (314)
++++|+.+|++++.+.+.. ..++.++|.+|..+|++++|+.++++++.+.+.. ..++.++|.++..+
T Consensus 158 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 158 QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 9999999999999874433 4578899999999999999999999999885432 25888999999999
Q ss_pred CCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhcc--CChHHH---HHHHH
Q psy4130 171 NDYKAALEAYTKAAE-----LD-PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVL--SDPSIQ---QVFGE 239 (314)
Q Consensus 171 g~~~~A~~~~~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~p~~~---~~l~~ 239 (314)
|++++|+.+|+++++ .+ |....++.++|.++..+|++++|. ..+..+..... .+|... ..++.
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~~al~~~~~~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH------EYHSKGMAYSQKAGDVIYLSEFEFLKS 311 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999998 46 777888999999999999999997 66666555443 355432 33444
Q ss_pred hhcC
Q psy4130 240 LFAN 243 (314)
Q Consensus 240 ~~~~ 243 (314)
++..
T Consensus 312 ~~~~ 315 (383)
T 3ulq_A 312 LYLS 315 (383)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 4444
No 119
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.62 E-value=1.6e-15 Score=109.00 Aligned_cols=104 Identities=15% Similarity=0.137 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGL 165 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~ 165 (314)
++..+..+|.++...|++++|+..|+++++.+|.+..++.++|.++...|++++|+.+++++++.+|. +..+++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34568889999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHhhCCCCH
Q psy4130 166 AYTQM-NDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 166 ~~~~~-g~~~~A~~~~~~al~~~p~~~ 191 (314)
++... |++++|++++++++..+|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999999753
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.62 E-value=6e-15 Score=137.19 Aligned_cols=137 Identities=12% Similarity=0.118 Sum_probs=113.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.|++++|+..|+++++.+|.+..+++++|.++...|++++|+..|+++++++|++..+++.+|.++..+|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCC
Q psy4130 182 KAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANP 244 (314)
Q Consensus 182 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~ 244 (314)
++++++|++..++.++|.++...|++++|. ..+..+.+..+.++..+..++.++...
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAA------AAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 889999999999999998888887664
No 121
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.62 E-value=4.7e-15 Score=110.18 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-------LYA 194 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~ 194 (314)
.+.++.++|.++++.|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999999988753 578
Q ss_pred HHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 195 NNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
.++|.++..+|++++|+ ..+...+.. ..||++...+..+
T Consensus 87 ~~lg~~~~~~~~~~~A~------~~~~kal~~-~~~~~~~~~l~~l 125 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAV------QWFHRSLSE-FRDPELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHTTCHHHHH------HHHHHHHHH-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHH------HHHHHHHhh-CcCHHHHHHHHHh
Confidence 89999999999999997 776666653 4578877666544
No 122
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.7e-16 Score=139.08 Aligned_cols=215 Identities=14% Similarity=0.132 Sum_probs=157.9
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCC-----chhhHHHHHHHhch--------------------h-hhhhhhcc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPA-----SNVDIESLFQLYYK--------------------D-EVLQWYSN 76 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-----~~~~l~~~~~~~~~--------------------~-~~~~~~~~ 76 (314)
.|..+...|++++|+.+|++++++.|..... ....++.++...+. . .+......
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 4445566899999999999999887743221 23344445544444 2 11111110
Q ss_pred CC--CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 77 IN--FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV------YYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 77 ~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
.. .......+.....+..+|.++...|++++|+.+|++++.+.|.... ++.++|.++...|++++|+.++++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 00 0012235667788999999999999999999999999988665433 899999999999999999999999
Q ss_pred HHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCC
Q psy4130 149 AIKIDPHY------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGV 216 (314)
Q Consensus 149 al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (314)
++.+.|.. ..++..+|.++...|++++|+..|++++.+.+.. ..++..++.++...|++++|.
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~----- 327 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM----- 327 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-----
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH-----
Confidence 99987765 6789999999999999999999999999986544 668999999999999999997
Q ss_pred cchHHHHHHhccCC------hHHHHHHHHhhcC
Q psy4130 217 FPGLSEMSTKVLSD------PSIQQVFGELFAN 243 (314)
Q Consensus 217 ~~~~~~~~~~~~~~------p~~~~~l~~~~~~ 243 (314)
..+..+....... ...+..++.++..
T Consensus 328 -~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (406)
T 3sf4_A 328 -HFAEKHLEISREVGDKSGELTARLNLSDLQMV 359 (406)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHH
Confidence 6666655543322 2344455555443
No 123
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=4.4e-16 Score=137.68 Aligned_cols=211 Identities=12% Similarity=0.053 Sum_probs=157.5
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCC--CCCChhhHHHHHHHHHHHHHHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNIN--FSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
....|++++|+.+|+++++..|+++. .....++.++...++. .+........ .......+..+.++..+|.++.
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 44689999999999999999994321 1233445555554432 2222211110 0112335677889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh--
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKN--------------------YKLALRDCQIAIKI-- 152 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~-- 152 (314)
..|++++|+.+|++++.+.|.. ..++.++|.+|...|+ +++|+..+.+++.+
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 178 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT 178 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999986643 4589999999999999 99999999999987
Q ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcccccCCCCCCCcchHHH
Q psy4130 153 ----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL------YANNMQAAMSNLNNSSSASGSGGVFPGLSE 222 (314)
Q Consensus 153 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (314)
.|....++..+|.++...|++++|+.++++++++.|.... ++.+++.++...|++++|. ..+..
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~ 252 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS------EYYKK 252 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH------HHHHH
Confidence 3445678999999999999999999999999998765433 8999999999999999997 66666
Q ss_pred HHHhccCC------hHHHHHHHHhhcC
Q psy4130 223 MSTKVLSD------PSIQQVFGELFAN 243 (314)
Q Consensus 223 ~~~~~~~~------p~~~~~l~~~~~~ 243 (314)
+....+.. ...+..++.++..
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~ 279 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTL 279 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHH
Confidence 66555443 3345555555544
No 124
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.61 E-value=6.2e-15 Score=114.36 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 119 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
++.++..++.+|.++...|+|++|+.+|++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..++++++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 199 AAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
.++..+|++++|. ..+..+.+..+.++..+
T Consensus 87 ~~~~~~g~~~~A~------~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 87 LARFDMADYKGAK------EAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHHTTCHHHHH------HHHHHHHHHHSSSCCHH
T ss_pred HHHHHccCHHHHH------HHHHHHHHhCCCchHHH
Confidence 9999999999999 88889998888888744
No 125
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.61 E-value=1.3e-14 Score=108.56 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=105.6
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130 117 DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196 (314)
Q Consensus 117 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (314)
..+|.++..++.+|.++...|++++|+..|++++.++|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCCcchHHHHHHhccC-----ChHHHHHHHHh
Q psy4130 197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS-----DPSIQQVFGEL 240 (314)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----~p~~~~~l~~~ 240 (314)
+|.++..+|++++|. ..+..+....+. ++.++..+..+
T Consensus 83 l~~~~~~~~~~~~A~------~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 83 LGQCQLEMESYDEAI------ANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHHTTCHHHHH------HHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH------HHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 999999999999998 777777777666 55565555544
No 126
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.60 E-value=6.5e-16 Score=129.06 Aligned_cols=206 Identities=12% Similarity=0.010 Sum_probs=158.6
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHH---------HHHHhch-hhhhhhhccCCC-CC------Ch--------
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIES---------LFQLYYK-DEVLQWYSNINF-SP------TE-------- 83 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~---------~~~~~~~-~~~~~~~~~~~~-~~------~~-------- 83 (314)
..++...|.++|.+++.++| +....|++. ++...+. .+.......... .. ..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP---~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE---SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh---hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccc
Confidence 37899999999999999999 666666644 2322222 111111000000 00 00
Q ss_pred --hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHH
Q psy4130 84 --EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY--AKA 159 (314)
Q Consensus 84 --~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~ 159 (314)
......+....++..+...|+|++|.+.|+..+...|.+. .++.+|.++.+.++|++|+..|++++...+.. ..+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a 173 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAA 173 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHH
Confidence 0011234567788999999999999999999999999888 99999999999999999999999887753221 458
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130 160 YGRMGLAYTQMNDYKAALEAYTKAAELD--PN-DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV 236 (314)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~ 236 (314)
++.+|.++..+|++++|+.+|++++.-. |. .+++++.+|.++..+|+.++|. ..+.++....|. +.++..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~------~~l~~a~a~~P~-~~~~~a 246 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV------ALLEWLQTTHPE-PKVAAA 246 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHH------HHHHHHHhcCCc-HHHHHH
Confidence 9999999999999999999999998654 55 6679999999999999999998 888888888888 999888
Q ss_pred HHHhhcCCC
Q psy4130 237 FGELFANPG 245 (314)
Q Consensus 237 l~~~~~~~~ 245 (314)
+.+.-..+.
T Consensus 247 L~~~~~~~~ 255 (282)
T 4f3v_A 247 LKDPSYRLK 255 (282)
T ss_dssp HHCTTCCCC
T ss_pred HhCCCCCCC
Confidence 887755543
No 127
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.60 E-value=1e-14 Score=134.45 Aligned_cols=197 Identities=13% Similarity=0.055 Sum_probs=159.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCchhhH--HHHHHH-------hchh--------hhhhhhccCCCCCCh-hhHHHHHHHHHH
Q psy4130 34 EVAVECLCKAYDIPDNIDPASNVDI--ESLFQL-------YYKD--------EVLQWYSNINFSPTE-EVKIEAEKYKNL 95 (314)
Q Consensus 34 ~~Ai~~~~~al~~~p~~~~~~~~~l--~~~~~~-------~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 95 (314)
++++..|++++..+| .++.+++ +.++.. .++. .+... +.++.. ..|.....|..+
T Consensus 255 ~~a~~~y~~al~~~p---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~----~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI----YERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----HHHHTTTTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH----HHHHHHHhCcccHHHHHHH
Confidence 578899999999999 5444444 334443 2221 12222 122232 356678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNSNP-VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDY 173 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~ 173 (314)
|..+...|++++|...|+++++..|.++ .+|.+++.++.+.|++++|+..|+++++..|.....+...+.+ +...|++
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence 9999999999999999999999999986 6999999999999999999999999999999888777776665 4469999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH----HHHHHHHhhcC
Q psy4130 174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS----IQQVFGELFAN 243 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~----~~~~l~~~~~~ 243 (314)
++|+..|+++++.+|+++.+|..++.++...|+.++|. ..+..+....+.+|+ +|..+..+...
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar------~~~~~al~~~~~~~~~~~~lw~~~~~~e~~ 475 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR------VLFERVLTSGSLPPEKSGEIWARFLAFESN 475 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHH------HHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHH------HHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998 777777777666776 88777766554
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.60 E-value=6.4e-16 Score=134.41 Aligned_cols=137 Identities=15% Similarity=0.084 Sum_probs=129.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---------------AKAYGRMGL 165 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 165 (314)
..+++++|+..|++++..+|..+.++.++|.++...|++++|+.+|++++.++|.+ ..+|+++|.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999998 699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
++..+|++++|+.+|+++++++|++..+++++|.++..+|++++|. ..+..+++..+.++.++..++.++..
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~------~~~~~al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR------ADFQKVLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999998888877554
No 129
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=4.9e-16 Score=133.28 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=158.0
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCC---CchhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHHHHHH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDP---ASNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNLGNTA 99 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~---~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~ 99 (314)
.....|++++|+.+|+++++.+|+++. .....++.++...+.. .+......... ......+..+.++..+|.++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 93 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 93 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 345689999999999999999994321 1222344455554433 22222111100 01123566788999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh-
Q psy4130 100 MQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKN--------------------YKLALRDCQIAIKI- 152 (314)
Q Consensus 100 ~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~- 152 (314)
...|++++|+..|++++.+.+.. ..++..+|.++...|+ +++|+..+++++.+
T Consensus 94 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~ 173 (338)
T 3ro2_A 94 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV 173 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986543 3489999999999999 99999999999887
Q ss_pred -----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchHH
Q psy4130 153 -----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGLS 221 (314)
Q Consensus 153 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 221 (314)
.|....++..+|.++...|++++|+..+++++++.+.. ..++..++.++...|++++|. ..+.
T Consensus 174 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------~~~~ 247 (338)
T 3ro2_A 174 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS------EYYK 247 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH------HHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH------HHHH
Confidence 33445789999999999999999999999999886643 238999999999999999997 7776
Q ss_pred HHHHhccCC------hHHHHHHHHhhcCC
Q psy4130 222 EMSTKVLSD------PSIQQVFGELFANP 244 (314)
Q Consensus 222 ~~~~~~~~~------p~~~~~l~~~~~~~ 244 (314)
......+.. +..+..++.++...
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 666655443 34555566665543
No 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=8.4e-15 Score=107.82 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
.++.+|.++...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..++.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 205 NNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 205 ~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
|++++|. ..+..+++..|.++
T Consensus 99 g~~~~A~------~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAAL------ASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHH------HHHHHHHC------
T ss_pred CCHHHHH------HHHHHHHHhCcCCC
Confidence 9999998 66666665555443
No 131
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.59 E-value=4.3e-16 Score=138.46 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=157.5
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCC---CC--chhhHHHHHHHhchh-hhhhhhccCCC--CCChhhHHHHHHHHHH
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNID---PA--SNVDIESLFQLYYKD-EVLQWYSNINF--SPTEEVKIEAEKYKNL 95 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~---~~--~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 95 (314)
|..+...|++++|+.+|++++++..... .. ....++.+|...+.. .+......... ......+.....+..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 3445568999999999999988732111 11 233445555555543 22222111110 0011256778899999
Q ss_pred HHHHHhcCC-----------------HHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 96 GNTAMQQDK-----------------PEQAVIEYSKAIDCD------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 96 g~~~~~~~~-----------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
|.++...|+ +++|+.+|++++.+. +....++.++|.++...|++++|+.++++++.+
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999 999999999998863 334568999999999999999999999999998
Q ss_pred CCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchH
Q psy4130 153 DPHYA------KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGL 220 (314)
Q Consensus 153 ~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 220 (314)
.|... .++..+|.++...|++++|+..|++++.+.|.. ..++..++.++...|++++|. ..+
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~ 326 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI------EYH 326 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHH------HHH
Confidence 77543 389999999999999999999999999988754 678999999999999999997 666
Q ss_pred HHHHHhccCC------hHHHHHHHHhhcCC
Q psy4130 221 SEMSTKVLSD------PSIQQVFGELFANP 244 (314)
Q Consensus 221 ~~~~~~~~~~------p~~~~~l~~~~~~~ 244 (314)
..+....... ...+..++.++...
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 6665544332 23455566665543
No 132
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.59 E-value=9.3e-15 Score=128.92 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP--- 154 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--- 154 (314)
.+..+.+++.+|.++...|+++.|+.++++++...+. .+.++.++|.+|...|++++|+.++++++.+.+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 4567788999999999999999999999999987543 245788999999999999999999999998743
Q ss_pred ---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 155 ---HYAKAYGRMGLAYTQMNDYKAALEAYTKAAE-----LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 155 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
....++.++|.++..+|++++|+.+|++++. .+|....++.++|.++..+|++++|. ..+..+...
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~ 290 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF------QFIEEGLDH 290 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH------HHHHHHHHH
Confidence 1346889999999999999999999999999 77878889999999999999999997 777666665
Q ss_pred ccC
Q psy4130 227 VLS 229 (314)
Q Consensus 227 ~~~ 229 (314)
...
T Consensus 291 ~~~ 293 (378)
T 3q15_A 291 ITA 293 (378)
T ss_dssp CCT
T ss_pred HHH
Confidence 543
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.58 E-value=2.2e-15 Score=120.71 Aligned_cols=146 Identities=11% Similarity=0.037 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-------------
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA------------- 157 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------------- 157 (314)
.....+......++|++|.+.++......+..+..+..+|.++...|+|++|+..|++++.+.|.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 85 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85 (198)
T ss_dssp ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 4445566677788888888888877776677788999999999999999999999999999999887
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 158 ---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 158 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
.+++++|.++..+|++++|+.+|++++.++|++..+++.+|.++..+|++++|. ..+..+....+.++.++
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~ 159 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK------ENLYKAASLNPNNLDIR 159 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHH------HHHHHHHHHCCCcHHHH
Confidence 899999999999999999999999999999999999999999999999999998 88888888889999888
Q ss_pred HHHHHhhc
Q psy4130 235 QVFGELFA 242 (314)
Q Consensus 235 ~~l~~~~~ 242 (314)
..++.+..
T Consensus 160 ~~l~~~~~ 167 (198)
T 2fbn_A 160 NSYELCVN 167 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876643
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.58 E-value=2.9e-14 Score=109.97 Aligned_cols=123 Identities=21% Similarity=0.256 Sum_probs=110.4
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+.+|++++..+| .+ +..+..+|.++...|++
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~~---~~-----------------------------------~~~~~~~a~~~~~~~~~ 63 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELNP---SN-----------------------------------AIYYGNRSLAYLRTECY 63 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST---TC-----------------------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCC---CC-----------------------------------hHHHHHHHHHHHHcCCH
Confidence 34568999999999999999988 33 34688999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA--YTQMNDYKAALEAYTKA 183 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~a 183 (314)
++|+..|++++..+|.++.+++++|.++...|++++|+.++++++.++|.+..++..++.+ +...|++++|+..+.++
T Consensus 64 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999999999999999999999999999999999999999999999888555554 88899999999999887
Q ss_pred Hhh
Q psy4130 184 AEL 186 (314)
Q Consensus 184 l~~ 186 (314)
..+
T Consensus 144 ~~~ 146 (166)
T 1a17_A 144 RSV 146 (166)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.58 E-value=4e-14 Score=122.00 Aligned_cols=169 Identities=7% Similarity=-0.037 Sum_probs=117.9
Q ss_pred hcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC-CHHHHH
Q psy4130 31 EGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD-KPEQAV 109 (314)
Q Consensus 31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~ 109 (314)
+..++|++++++++.++| ++. .+|+.++.++...+ .+++++
T Consensus 68 e~se~AL~lt~~~L~~nP---~~y-----------------------------------taWn~R~~iL~~l~~~l~eEL 109 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP---AHY-----------------------------------TVWQYRFSLLTSLNKSLEDEL 109 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT---TCH-----------------------------------HHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc---hhH-----------------------------------HHHHHHHHHHHHhhhhHHHHH
Confidence 344678999999999999 442 35666666666666 477777
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--------HHHHH
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKL-K-NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK--------AALEA 179 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~--------~A~~~ 179 (314)
..+++++..+|.+..+|+.++.++... + ++++++.++.++++.+|++..+|..++.++...+.++ ++++.
T Consensus 110 ~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~ 189 (349)
T 3q7a_A 110 RLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDW 189 (349)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 777777777777777777777777766 6 6777777777777777777777777777777766666 77777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcc-------cccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNLNN-------SSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+.++++.+|.|..+|..++.+...+++ ++++. ....+.+...|+|...|..+..++..
T Consensus 190 ~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL------e~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 190 CNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL------IYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 777777777777777777777776665 23343 45555566666777777666666544
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.57 E-value=8.5e-14 Score=118.43 Aligned_cols=152 Identities=9% Similarity=-0.031 Sum_probs=127.3
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
....+++++|++.|+++++..| ... ........++.+|.++...|+++
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~---~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEE---YHP-----------------------------EFQQFLQWQYYVAAYVLKKVDYE 132 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCC---CCH-----------------------------HHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHhhhHHHHHHHHHHHhcccc---CCh-----------------------------hHHHHHHHHHHHHHHHhcCCCHH
Confidence 3457889999999999888777 221 11233445677999999999999
Q ss_pred HHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHcCCH
Q psy4130 107 QAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAI---KIDPHYA----KAYGRMGLAYTQMNDY 173 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~g~~ 173 (314)
+|+..|++++...+.. ..++.++|.+|...|++++|+.+|++++ ...|++. .+++++|.++..+|++
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence 9999999999875543 5689999999999999999999999999 5566643 6899999999999999
Q ss_pred HHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccC
Q psy4130 174 KAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A 210 (314)
++|+.++++++.+.++ ...++.++|.++..+|++++|
T Consensus 213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999988643 267899999999999999999
No 137
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.56 E-value=2.9e-14 Score=115.57 Aligned_cols=185 Identities=12% Similarity=0.010 Sum_probs=132.0
Q ss_pred HHHHHHHHHcCCCCCCCCCchhhHHHHHHHhch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC----CHHHHH
Q psy4130 35 VAVECLCKAYDIPDNIDPASNVDIESLFQLYYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD----KPEQAV 109 (314)
Q Consensus 35 ~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~A~ 109 (314)
+|+.+|+++.+... ....+.++.+|....+ ..+..+.... ....++.+++.+|.++.. + ++++|+
T Consensus 4 eA~~~~~~aa~~g~---~~a~~~lg~~~~~~~~~~~A~~~~~~a------~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 4 EPGSQYQQQAEAGD---RRAQYYLADTWVSSGDYQKAEYWAQKA------AAQGDGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp CTTHHHHHHHHTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHH------HHTTCHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred hHHHHHHHHHHCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 45566666655432 3344455555544332 2333332211 112356788899999888 6 899999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHH
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDP--HYAKAYGRMGLAYTQ----MNDYKAALEA 179 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~----~g~~~~A~~~ 179 (314)
.+|++++. +.++.+++++|.+|.. .+++++|+.+|++++...| .++.+++.||.+|.. .+++++|+.+
T Consensus 74 ~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 74 QLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 99999965 5788999999999987 8899999999999999888 458999999999998 8899999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhc------ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNLN------NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
|++++++ |.++.++++|+.++..-. ++++|. ..+...+.. .+++....+..+
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~------~~~~~A~~~--g~~~A~~~l~~l 209 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKAL------HWLNVSCLE--GFDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHH------HHHHHHHHH--TCHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHH------HHHHHHHHc--CCHHHHHHHHHh
Confidence 9999988 667788999999987642 666775 444444432 456655555544
No 138
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.56 E-value=7.6e-15 Score=111.65 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-------YAK-----AYGRMGLAYTQMNDYKAALEAYTKAAEL---- 186 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~---- 186 (314)
+..+.++|.+++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567899999999999999999999999999999 444 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 187 ---DPNDPLYA----NNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 187 ---~p~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
+|++..+| +++|.++..+|++++|+ ..+..++...|+|..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl------~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAM------PEFKKVVEMIEERKG 137 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHCCS
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHH------HHHHHHHhcCCCcHH
Confidence 99999999 99999999999999999 888888887777653
No 139
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.56 E-value=7.4e-15 Score=125.98 Aligned_cols=136 Identities=11% Similarity=-0.012 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY--- 156 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--- 156 (314)
...+..+..+|.++...|++++|+.+|++++.+.+. ...++.++|.+|.. |++++|+.+|++++.+.|..
T Consensus 73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~ 151 (307)
T 2ifu_A 73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL 151 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh
Confidence 345778999999999999999999999999998543 24678999999998 99999999999999997653
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 157 ---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 157 ---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
..++.++|.++..+|++++|+.+|++++.+.|.+ ..++..++.++..+|++++|. ..+..+. ..
T Consensus 152 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~------~~~~~al-~~ 224 (307)
T 2ifu_A 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ------KCVRESY-SI 224 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHT-TS
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHh-CC
Confidence 5789999999999999999999999999987654 347888999999999999997 6666666 44
Q ss_pred cC
Q psy4130 228 LS 229 (314)
Q Consensus 228 ~~ 229 (314)
+.
T Consensus 225 p~ 226 (307)
T 2ifu_A 225 PG 226 (307)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 140
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=9.7e-15 Score=128.93 Aligned_cols=123 Identities=13% Similarity=0.022 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIK-----ID 153 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~ 153 (314)
.+..+.++..+|.++...|++++|+.+|++++.+.+... .++.++|.+|..+|++++|+.++++++. .+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 556678999999999999999999999999998855432 5899999999999999999999999999 46
Q ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHhccc
Q psy4130 154 -PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD-----PNDPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 154 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~ 207 (314)
|..+.++..+|.++..+|++++|+.++++++++. |.....+..++.++...|+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 8888999999999999999999999999999984 33334467788888888883
No 141
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.55 E-value=1e-14 Score=132.73 Aligned_cols=134 Identities=21% Similarity=0.251 Sum_probs=119.1
Q ss_pred hccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHH
Q psy4130 19 ELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNT 98 (314)
Q Consensus 19 ~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 98 (314)
.+...|......|++++|+++|+++++++| .+ +.++..+|.+
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p---~~-----------------------------------~~~~~~lg~~ 49 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNP---SN-----------------------------------AIYYGNRSLA 49 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---cc-----------------------------------HHHHHHHHHH
Confidence 455677788889999999999999999999 33 3579999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHH
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA--YTQMNDYKAA 176 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A 176 (314)
+...|++++|+..|+++++++|.++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+ +...|++++|
T Consensus 50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A 129 (477)
T 1wao_1 50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERA 129 (477)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 8899999999
Q ss_pred HHHHH-----------HHHhhCCCC
Q psy4130 177 LEAYT-----------KAAELDPND 190 (314)
Q Consensus 177 ~~~~~-----------~al~~~p~~ 190 (314)
+..++ +++.++|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 130 IAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp ------CCSTTTCCTTSSCCCCTTC
T ss_pred hccccccchhHhhhhhhhccccccc
Confidence 99999 888887764
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=1e-13 Score=100.24 Aligned_cols=114 Identities=23% Similarity=0.230 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 201 (314)
.+..++.+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 202 SNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 202 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
...|++++|. ..+..+....+.++.++..++.+.
T Consensus 83 ~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAK------RTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHH------HHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHH------HHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999998 888888888888998888877653
No 143
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-13 Score=104.49 Aligned_cols=120 Identities=18% Similarity=0.088 Sum_probs=113.3
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy4130 118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194 (314)
Q Consensus 118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (314)
.+|.+...++.+|.++...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++.++|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 195 NNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
..++.++...|++++|. ..+..+....+.++.++..+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~------~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAV------LDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHH------HHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHH------HHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999998 88889999999999999988887554
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.55 E-value=4.7e-14 Score=104.50 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy4130 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 119 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 198 (314)
.|.....++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++.+|++..++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhc
Q psy4130 199 AAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFA 242 (314)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~ 242 (314)
.++...|++++|. ..+.......+.++.++..++.++.
T Consensus 92 ~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 92 AALEAMKDYTKAM------DVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHTTCHHHHH------HHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHH------HHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999999999998 8888888888888888888777654
No 145
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=4.6e-15 Score=127.15 Aligned_cols=189 Identities=16% Similarity=0.176 Sum_probs=128.4
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCC-----chhhHHHHHHHhch--------------------h-hhhhhhcc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPA-----SNVDIESLFQLYYK--------------------D-EVLQWYSN 76 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-----~~~~l~~~~~~~~~--------------------~-~~~~~~~~ 76 (314)
.|......|++++|+.+|++++++.|..... ....++.++...+. . .+......
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 3444556788888888888888776643221 22333444444333 1 11111100
Q ss_pred CC--CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 77 IN--FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 77 ~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
.. .......+.....+..+|.++...|++++|+..|++++...+.. ..++.++|.++...|++++|+..+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00 00011245556778888888888888888888888888765432 23788888888888888888888888
Q ss_pred HHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCC
Q psy4130 149 AIKIDPHY------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 149 al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++.+.+.. ..++..+|.++...|++++|+..+++++.+.+.. ..++..++.++...|++++|.
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 88876654 6778888888888888888888888888875532 447788888888888888886
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.54 E-value=7.2e-14 Score=118.89 Aligned_cols=159 Identities=9% Similarity=-0.013 Sum_probs=127.3
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
..+++++|++.|+++++..+ ..+. .......+..+|.++...+++++|
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~---~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~~~~A 134 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEE---YHPE-----------------------------FQQFLQWQYYVAAYVLKKVDYEYC 134 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCC---CCHH-----------------------------HHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHhcccc---CChH-----------------------------HHHHHHHHHHHHHHHHcccCHHHH
Confidence 46788888899888888666 2211 112234566689999999999999
Q ss_pred HHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHcCCHHH
Q psy4130 109 VIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKI-------DPHYAKAYGRMGLAYTQMNDYKA 175 (314)
Q Consensus 109 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~ 175 (314)
+.+|++++...+.. ..++.++|.+|..+|++++|+.+|+++++. .+....+++++|.++..+|++++
T Consensus 135 i~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 3u3w_A 135 ILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp HHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999965432 337899999999999999999999999953 12334689999999999999999
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcc-cccCCCCCCCcchHHHHHH
Q psy4130 176 ALEAYTKAAELDPND------PLYANNMQAAMSNLNN-SSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 176 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~ 225 (314)
|+.++++++++.+.. ..++.++|.++..+|+ +++|. ..+..+..
T Consensus 215 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~------~~~~~Al~ 265 (293)
T 3u3w_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIE------DAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHH------HHHHHHHH
Confidence 999999999987544 7899999999999996 58997 55555444
No 147
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.54 E-value=2.1e-14 Score=102.96 Aligned_cols=108 Identities=16% Similarity=0.173 Sum_probs=99.7
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q psy4130 118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYAN 195 (314)
Q Consensus 118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 195 (314)
++|+++.++..+|.++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..|+++++.+|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHh-cccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 196 NMQAAMSNL-NNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 196 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
.++.++... |++++|. ..+.......+.++
T Consensus 81 ~l~~~~~~~~~~~~~A~------~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 81 AKADALRYIEGKEVEAE------IAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCSSCSHHHH------HHHHHHGGGCCCCC
T ss_pred HHHHHHHHHhCCHHHHH------HHHHHHhhcccCCC
Confidence 999999999 9999997 66666666555543
No 148
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.54 E-value=4.6e-14 Score=109.15 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKI------------------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
+..+..+|..++..|+|++|+..|.+++.+ +|.++.+|+++|.++..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999999 77788999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCCh-HHHHHHHHh
Q psy4130 185 ELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP-SIQQVFGEL 240 (314)
Q Consensus 185 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p-~~~~~l~~~ 240 (314)
.++|+++.+++.+|.++..+|++++|. ..+..+....|.++ .++..+..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~------~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAE------EDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHH------HHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998 88888998888888 666666655
No 149
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.54 E-value=3.2e-13 Score=115.03 Aligned_cols=198 Identities=8% Similarity=-0.055 Sum_probs=158.8
Q ss_pred hcHHHHHHHHHHHcCCCCCCCCCchhhHHH--HH----HHh---ch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHH
Q psy4130 31 EGIEVAVECLCKAYDIPDNIDPASNVDIES--LF----QLY---YK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAM 100 (314)
Q Consensus 31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~--~~----~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (314)
.++++++.++++++..+| .+..++..+ ++ ... .. .+... ...+....+|.+..+|...+.+..
T Consensus 83 ~~~~eeL~~~~~~L~~nP---k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~----~~~~~l~~~pkny~aW~~R~~vl~ 155 (306)
T 3dra_A 83 RNLYDELDWCEEIALDNE---KNYQIWNYRQLIIGQIMELNNNDFDPYREFD----ILEAMLSSDPKNHHVWSYRKWLVD 155 (306)
T ss_dssp SCHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH----HHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCc---ccHHHHHHHHHHHHHHHHhccccCCHHHHHH----HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 389999999999999999 554444433 33 222 11 11111 223345678899999999999999
Q ss_pred hcCCHH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 101 QQDKPE--QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN------YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 101 ~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
..+.++ +++..++++++.+|.+..+|..++.++...+. ++++++++.+++..+|.+..+|+.++.++...|+
T Consensus 156 ~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 156 TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence 999999 99999999999999999999999999999988 9999999999999999999999999999999998
Q ss_pred HHH-HHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH-hccCChHHHHHHHHhh
Q psy4130 173 YKA-ALEAYTKAAELD---PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST-KVLSDPSIQQVFGELF 241 (314)
Q Consensus 173 ~~~-A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~p~~~~~l~~~~ 241 (314)
..+ ....+.+++.++ |.++.++..++.++.+.|+.++|+ ..+..+.. .-|-+...|......+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~------~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 236 SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR------TVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH------HHHHHHHhccChHHHHHHHHHHhhc
Confidence 555 556777788776 889999999999999999999997 55555443 2444556777666543
No 150
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.53 E-value=3.3e-14 Score=107.89 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=80.9
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCC-
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDK- 104 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~- 104 (314)
.....+.+++|+++|+++++++| .+ +.+|..+|.++...++
T Consensus 11 ~~~r~~~feeA~~~~~~Ai~l~P---~~-----------------------------------aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTYKSNP---LD-----------------------------------ADNLTRWGGVLLELSQF 52 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCT---TC-----------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHCC---CC-----------------------------------HHHHHHHHHHHHHhccc
Confidence 34567889999999999999999 44 3356666666666655
Q ss_pred ---------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCcH
Q psy4130 105 ---------PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-----------NYKLALRDCQIAIKIDPHYA 157 (314)
Q Consensus 105 ---------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~ 157 (314)
+++|+..|+++|+++|++..+|+++|.+|..+| ++++|+.+|++|++++|++.
T Consensus 53 ~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 53 HSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred chhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 569999999999999999999999999999885 89999999999999999975
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=1.9e-13 Score=99.71 Aligned_cols=118 Identities=27% Similarity=0.320 Sum_probs=107.5
Q ss_pred cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130 118 CDNSN-PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196 (314)
Q Consensus 118 ~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (314)
.+|.. ..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++..+|.++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35555 77899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhh
Q psy4130 197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELF 241 (314)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~ 241 (314)
++.++...|++++|. ..+..+....+.++..+..++.+.
T Consensus 83 la~~~~~~~~~~~A~------~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 83 LGNAYYKQGDYDEAI------EYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHTTCHHHHH------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHH------HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999998 888888888889998888777664
No 152
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.53 E-value=6.7e-14 Score=102.15 Aligned_cols=102 Identities=16% Similarity=-0.060 Sum_probs=87.6
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
.|++++|+.+|++++++.+ . +|..+.++..+|.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~---~--------------------------------~p~~~~~~~~lg~~~~~~~~~~~A~ 47 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL---Q--------------------------------GKDLAECYLGLGSTFRTLGEYRKAE 47 (117)
T ss_dssp ----CCCHHHHHHHHSSCC---C--------------------------------HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCC---C--------------------------------CccHHHHHHHHHHHHHHcCCHHHHH
Confidence 6788999999999999865 1 2355778999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy4130 110 IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166 (314)
Q Consensus 110 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 166 (314)
..|+++++.+|+++.+++++|.++...|++++|+..+++++..+|+++........+
T Consensus 48 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai 104 (117)
T 3k9i_A 48 AVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104 (117)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998765444333
No 153
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.52 E-value=1.1e-13 Score=101.87 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=111.6
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy4130 118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197 (314)
Q Consensus 118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (314)
.+|.++..+..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 198 QAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+.++...|++++|. ..+..+....+.++..+..++.++..
T Consensus 87 ~~~~~~~~~~~~A~------~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 87 GLALSSLNKHVEAV------AYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp HHHHHHTTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHH------HHHHHHHhcCccchHHHHHHHHHHHH
Confidence 99999999999998 88888888888999988888877544
No 154
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.52 E-value=4.2e-15 Score=134.57 Aligned_cols=137 Identities=13% Similarity=0.060 Sum_probs=123.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Q psy4130 101 QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY---------------AKAYGRMGL 165 (314)
Q Consensus 101 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~ 165 (314)
..++|++|+..|+.++...|..+..+.++|.+++..|+|++|+.+|+++++++|.+ ..+|+++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999999999999999998 799999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
++..+|++++|+.+|+++++++|++..+++++|.++..+|++++|+ ..+..+.+..+.++.++..++.++..
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~------~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAK------GDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 88888888888888888888777544
No 155
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=5.7e-14 Score=119.46 Aligned_cols=159 Identities=16% Similarity=0.100 Sum_probs=135.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 79 FSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 79 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
+......|..+..+..+|.++...|++++|+..|++++++ .|....++..+|.++...|++++|+.++++++
T Consensus 17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 96 (311)
T 3nf1_A 17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL 96 (311)
T ss_dssp SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4556677889999999999999999999999999999995 66778899999999999999999999999999
Q ss_pred Hh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhcccccCCCCC
Q psy4130 151 KI--------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD--------PNDPLYANNMQAAMSNLNNSSSASGSG 214 (314)
Q Consensus 151 ~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~ 214 (314)
.+ +|....++..+|.++...|++++|+..|++++++. |....++..++.++...|++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~--- 173 (311)
T 3nf1_A 97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE--- 173 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH---
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH---
Confidence 88 46667899999999999999999999999999884 556778999999999999999997
Q ss_pred CCcchHHHHHHhc--------cCChHHHHHHHHhhcC
Q psy4130 215 GVFPGLSEMSTKV--------LSDPSIQQVFGELFAN 243 (314)
Q Consensus 215 ~~~~~~~~~~~~~--------~~~p~~~~~l~~~~~~ 243 (314)
..+..+.... +..+..+..++.++..
T Consensus 174 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~ 207 (311)
T 3nf1_A 174 ---YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK 207 (311)
T ss_dssp ---HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 6666666552 2223455666666554
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.51 E-value=1.8e-13 Score=101.16 Aligned_cols=111 Identities=14% Similarity=0.073 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---KAYGRMGLAYTQMNDYKAALEAYTKAAELDPND---PLYANNM 197 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 197 (314)
..++.+|.++...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3478899999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 198 QAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
|.++..+|++++|. ..+..+....|.++........+
T Consensus 83 a~~~~~~g~~~~A~------~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 83 GLSQYGEGKNTEAQ------QTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHTTCHHHHH------HHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHH------HHHHHHHHHCCCChHHHHHHHHH
Confidence 99999999999998 88888999888888776555544
No 157
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.51 E-value=1.9e-13 Score=99.24 Aligned_cols=102 Identities=15% Similarity=0.224 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
++|+..|+++++.+|.++.+++++|.++...|++++|+.+|++++.++|.++.+|+.+|.++...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC--CHHHHHHHHHHHHHhccc
Q psy4130 186 LDPN--DPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 186 ~~p~--~~~~~~~l~~~~~~~~~~ 207 (314)
++|. +......+...+..+++.
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhccc
Confidence 9884 556666666666665543
No 158
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.49 E-value=8.2e-13 Score=106.97 Aligned_cols=145 Identities=12% Similarity=-0.016 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK----NYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
.++.+++.+|.++...+++++|+.+|+++++. .++.+++++|.+|.. + ++++|+.+|++++. +.++.++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~ 90 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV 90 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence 56789999999999999999999999999875 689999999999998 7 99999999999965 578999999
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChH
Q psy4130 163 MGLAYTQ----MNDYKAALEAYTKAAELDP--NDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 163 lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
||.++.. .+++++|+.+|+++++..| .++.++++|+.++.. .+++++|. ..+..++.. +.++.
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~------~~~~~A~~~-~~~~~ 163 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS------EYFKGSSSL-SRTGY 163 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH------HHHHHHHHT-SCTTH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH------HHHHHHHHc-CCCHH
Confidence 9999998 8999999999999999988 358999999999999 78888887 666666655 77888
Q ss_pred HHHHHHHhhcC
Q psy4130 233 IQQVFGELFAN 243 (314)
Q Consensus 233 ~~~~l~~~~~~ 243 (314)
....++.++..
T Consensus 164 a~~~Lg~~y~~ 174 (212)
T 3rjv_A 164 AEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888888765
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.6e-14 Score=102.72 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND------PLYANN 196 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 196 (314)
+..+..+|.++...|++++|+..|+++++++|.++.+++++|.++..+|++++|+..|+++++++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666766666666666666 666777
Q ss_pred HHHHHHHhcccccCCCC
Q psy4130 197 MQAAMSNLNNSSSASGS 213 (314)
Q Consensus 197 l~~~~~~~~~~~~A~~~ 213 (314)
++.++..+|+++.|+..
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 77777777777666633
No 160
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.48 E-value=6.1e-13 Score=95.43 Aligned_cols=95 Identities=27% Similarity=0.349 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYG 161 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 161 (314)
.+..++.+|.+++..|+|++|+..|+++++.+|.++.+++++|.++..+|++++|+.+++++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy4130 162 RMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~ 182 (314)
.+|.++..+|+++.|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988888766554
No 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.47 E-value=3.6e-14 Score=123.42 Aligned_cols=149 Identities=16% Similarity=0.120 Sum_probs=85.7
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
.|......+++++|+.+|++++.+.| .+.. +......... .......+++++|.++...
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~~p---~~~~------~~~~~~~~~~------------~~~l~~~~~~nla~~~~~~ 243 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAYMG---DDFM------FQLYGKYQDM------------ALAVKNPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHHSC---HHHH------HTCCHHHHHH------------HHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhc---cchh------hhhcccHHHH------------HHHHHHHHHHHHHHHHHHc
Confidence 34455678999999999999999999 3321 0000000000 0011224799999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA-YTQMNDYKAALEAYT 181 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~ 181 (314)
++|++|+.+|++++.++|.+..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+ ....+..+.+...|.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 455677888999999
Q ss_pred HHHhhCCCCHH
Q psy4130 182 KAAELDPNDPL 192 (314)
Q Consensus 182 ~al~~~p~~~~ 192 (314)
+++...|+++.
T Consensus 324 ~~l~~~p~~~~ 334 (338)
T 2if4_A 324 GIFKGKDEGGA 334 (338)
T ss_dssp -----------
T ss_pred HhhCCCCCCCC
Confidence 99999998764
No 162
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=1.9e-13 Score=120.52 Aligned_cols=182 Identities=9% Similarity=-0.011 Sum_probs=137.5
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCC-----chhhHHHHHHHhchhh-hhhhhcc---CCCCCChhhHHHHHHHHHH
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPA-----SNVDIESLFQLYYKDE-VLQWYSN---INFSPTEEVKIEAEKYKNL 95 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~-----~~~~l~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~ 95 (314)
......|++++|+.+|++++++.+...+. ....++.+|...+... +...... .........+..+.++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34567999999999999999986644232 2334455665555432 2221111 1111122245678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCcHHHHHHHH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIK-----IDPHYAKAYGRMG 164 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~lg 164 (314)
|.++...|++++|+.+|++++.+.+. ...++.++|.+|..+|++++|+.++++++. .+|..+.+++.+|
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999999986431 245789999999999999999999999999 7888899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhcc
Q psy4130 165 LAYTQMNDYKAALEAYTKAAELDPN-----DPLYANNMQAAMSNLNN 206 (314)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~~~~ 206 (314)
.++..+|++++|+.++++++++.+. .......++.++...++
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999998543 34455666666666666
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.46 E-value=3.5e-13 Score=102.91 Aligned_cols=135 Identities=18% Similarity=0.182 Sum_probs=115.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-- 156 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-- 156 (314)
....+.++..+|.++...|++++|+.+|++++...+... .++.++|.++...|++++|+..+++++.+.+..
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 84 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 345678899999999999999999999999998765422 478999999999999999999999999986543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 157 ----AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN------DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 157 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
..++..+|.++...|++++|+..+++++.+.+. ...++..++.++...|++++|. ..+....+
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~a~~ 157 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM------HFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH------HHHHHHHH
Confidence 578999999999999999999999999987432 2467899999999999999997 55555444
No 164
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.45 E-value=3.5e-12 Score=109.40 Aligned_cols=179 Identities=11% Similarity=-0.048 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQD--KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN-YKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
..+|...+.++...+ .+++++.++.++++.+|.+..+|..++.+....|. ++++++++.+++..+|.+..+|..++.
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 457888888888888 48999999999999999999999999999999998 699999999999999999999999999
Q ss_pred HHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-c----------ccccCCCCCCCcchH
Q psy4130 166 AYTQM--------------NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL-N----------NSSSASGSGGVFPGL 220 (314)
Q Consensus 166 ~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~----------~~~~A~~~~~~~~~~ 220 (314)
++... +.++++++++.+++.++|++..+|+.+..++... | .+++++ ..+
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el------~~~ 261 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL------ESC 261 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH------HHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHH------HHH
Confidence 99887 5689999999999999999999998666665554 2 344454 555
Q ss_pred HHHHHhccCChHHHHHHHHhhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhChHHHHHHHH
Q psy4130 221 SEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQ 285 (314)
Q Consensus 221 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l~~ 285 (314)
.++....|.+ .|.+++.+........ . + .-........++...+|-....-.+
T Consensus 262 ~elle~~pd~--~w~l~~~~~~~~~~~~--~-~-------~~~~~~~~l~~l~~~Dp~r~~~y~d 314 (331)
T 3dss_A 262 KELQELEPEN--KWCLLTIILLMRALDP--L-L-------YEKETLQYFSTLKAVDPMRAAYLDD 314 (331)
T ss_dssp HHHHHHCTTC--HHHHHHHHHHHHHHCT--T-T-------THHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHhhCccc--chHHHHHHHHHHhhcc--c-c-------cHHHHHHHHHHHHHhCcchhhHHHH
Confidence 5666666655 4655554422100000 0 1 1223455677778888875554443
No 165
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.45 E-value=2.7e-12 Score=117.05 Aligned_cols=189 Identities=15% Similarity=0.050 Sum_probs=140.1
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHH----hch-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc--
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQL----YYK-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ-- 102 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-- 102 (314)
.+++++|+.+|+++++..+ ....+.++.+|.. ..+ ..+..+...... ..++.+++.+|.++...
T Consensus 236 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~------~~~~~a~~~Lg~~y~~~~~ 306 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE------QGNSDGQYYLAHLYDKGAE 306 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHCBT
T ss_pred CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH------cCCHHHHHHHHHHHHcCCC
Confidence 5677778888887777655 4555666666654 221 223333222211 13456788888888887
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCC
Q psy4130 103 ---DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MND 172 (314)
Q Consensus 103 ---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~ 172 (314)
+++++|+.+|+++++. .++.+++++|.+|...| ++++|+.+|+++++. .++.+++.+|.++.. .++
T Consensus 307 g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 307 GVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp TBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred CCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 8899999999998876 46778899999988855 888999999999887 678899999999998 889
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccC---ChHHHHHHHH
Q psy4130 173 YKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLS---DPSIQQVFGE 239 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~---~p~~~~~l~~ 239 (314)
+++|+.+|+++++.. ++.++.+++.++.. .+++++|. ..+..+...-++ ++..+..++.
T Consensus 383 ~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~------~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 383 EQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAW------AWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH------HHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHH------HHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 999999999998754 68899999999988 78888887 777777777644 5555554444
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.45 E-value=5.9e-13 Score=98.01 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q psy4130 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND-------PLY 193 (314)
Q Consensus 121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~ 193 (314)
..+..++.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+.+|++++...|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999999999877 889
Q ss_pred HHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 194 ANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+..++.++...|++++|. ..+..+....+ ++.++..+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~------~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAI------HFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHH------HHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHH------HHHHHHHHhCC-CHHHHHHHHHH
Confidence 999999999999999997 77777776655 78777776655
No 167
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.44 E-value=3.7e-13 Score=121.63 Aligned_cols=195 Identities=10% Similarity=0.088 Sum_probs=138.9
Q ss_pred hcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhh----hhhccCC---------------------CCC----
Q psy4130 31 EGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVL----QWYSNIN---------------------FSP---- 81 (314)
Q Consensus 31 ~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~---------------------~~~---- 81 (314)
+++++|+.+|+++++..+ ....+.++.+|......... .+..... .+.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence 578899999999988666 56677777766654431100 0000000 000
Q ss_pred ----ChhhHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHH
Q psy4130 82 ----TEEVKIEAEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL----KNYKLALRDCQIAI 150 (314)
Q Consensus 82 ----~~~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al 150 (314)
......++.+++.+|.++...| ++++|+.+|+++....|..+..++++|.+|... +++++|+.+|+++.
T Consensus 165 ~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 165 ERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 0000123447888999999999 999999999999999999988889999998765 68999999999988
Q ss_pred HhCCCcHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-----ccccCCCCCCCcchHHH
Q psy4130 151 KIDPHYAKAYGRMGLA-Y--TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN-----NSSSASGSGGVFPGLSE 222 (314)
Q Consensus 151 ~~~p~~~~~~~~lg~~-~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~ 222 (314)
|.++.+++++|.+ + ...+++++|+.+|+++.+. +++.+++++|.++. .| ++++|. ..+..
T Consensus 245 ---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~------~~~~~ 312 (452)
T 3e4b_A 245 ---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAE------AHFEK 312 (452)
T ss_dssp ---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHH------HHHHT
T ss_pred ---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHH------HHHHH
Confidence 8889999999988 4 4678899999999998854 47888888988887 55 666665 44433
Q ss_pred HHHhccCChHHHHHHHHhhcC
Q psy4130 223 MSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 223 ~~~~~~~~p~~~~~l~~~~~~ 243 (314)
++ +.++.....++.++..
T Consensus 313 Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 313 AV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp TT---TTCHHHHHHHHHHHHT
T ss_pred Hh---CCCHHHHHHHHHHHHC
Confidence 33 5666666666666554
No 168
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.44 E-value=6.6e-13 Score=105.89 Aligned_cols=133 Identities=11% Similarity=0.021 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID------CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI---DPH---- 155 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~---- 155 (314)
+..+..+|.++...|++++|+..|++++. ..|....++.++|.++...|++++|+..+++++.+ .++
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 56899999999999999999999999999 34455678999999999999999999999999998 442
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP--ND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
...++..+|.++...|++++|+..+++++.+.+ .+ ..++.+++.++...|++++|. ..+.+.....
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~~~~al~~~ 177 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ------QHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH------HHHHHHHHHH
Confidence 356799999999999999999999999997643 22 235689999999999999997 6666555543
No 169
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.44 E-value=3.1e-13 Score=115.83 Aligned_cols=167 Identities=16% Similarity=0.091 Sum_probs=134.6
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
.|++++|.++++++.+..+ .... . .......-...+...|.++...|+|++|+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~---~~~~-----------------------~-~~~~~~~A~~~~~~a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK---TSFM-----------------------K-WKPDYDSAASEYAKAAVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC---CCSS-----------------------S-CSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc---cccc-----------------------C-CCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6789999999999887666 2200 0 01122333456777789999999999999
Q ss_pred HHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHH
Q psy4130 110 IEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 110 ~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
.+|.+++.+.+.. ..++.++|.+|..+|++++|+.+|++++.+.+. ...++.++|.++.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9999999986532 468899999999999999999999999998543 24788999999999 9999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130 178 EAYTKAAELDPND------PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSD 230 (314)
Q Consensus 178 ~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 230 (314)
.+|++++.+.|.. ..++.+++.++..+|++++|+ ..+..++...+.+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~~~~ 188 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA------ASLQKEKSMYKEM 188 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHc
Confidence 9999999998754 568999999999999999998 7777777665443
No 170
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=1.8e-12 Score=119.40 Aligned_cols=157 Identities=12% Similarity=-0.000 Sum_probs=140.4
Q ss_pred hhhHHHHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q psy4130 83 EEVKIEAEKYKNLGNTAMQ-------QDKPE-------QAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 147 (314)
...|.++..|..+|..+.. .|+++ +|+..|+++++ .+|++..+|..+|.++...|++++|...|+
T Consensus 266 ~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~ 345 (530)
T 2ooe_A 266 LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYN 345 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3456778899999999986 79987 99999999997 899999999999999999999999999999
Q ss_pred HHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHhcccccCCCCCCCcchHHHHHH
Q psy4130 148 IAIKIDPHYA-KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA-MSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 148 ~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
++++++|.++ .+|..++.++...|++++|+..|+++++..|.....+...+.+ +...|+.++|. ..+..+++
T Consensus 346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~------~~~e~al~ 419 (530)
T 2ooe_A 346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF------KIFELGLK 419 (530)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHH------HHHHHHHH
T ss_pred HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHH------HHHHHHHH
Confidence 9999999985 6999999999999999999999999999999887777766665 34689999998 88889999
Q ss_pred hccCChHHHHHHHHhhcCCC
Q psy4130 226 KVLSDPSIQQVFGELFANPG 245 (314)
Q Consensus 226 ~~~~~p~~~~~l~~~~~~~~ 245 (314)
..|.++.+|..+..+....+
T Consensus 420 ~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 420 KYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHTTCHHHHHHHHHHHTTTT
T ss_pred HCCCCHHHHHHHHHHHHhCC
Confidence 99999999999998876643
No 171
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.44 E-value=1.8e-12 Score=89.40 Aligned_cols=82 Identities=30% Similarity=0.408 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAY 167 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 167 (314)
.+..++.+|.++...|++++|+..|++++..+|.++.++.++|.++...|++++|+.++++++.++|.++.++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555444
Q ss_pred HH
Q psy4130 168 TQ 169 (314)
Q Consensus 168 ~~ 169 (314)
..
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 172
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.44 E-value=2.3e-12 Score=88.86 Aligned_cols=85 Identities=32% Similarity=0.454 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy4130 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200 (314)
Q Consensus 121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 200 (314)
.++.+++.+|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|+++++++|+++.++.+++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q psy4130 201 MSNLN 205 (314)
Q Consensus 201 ~~~~~ 205 (314)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88764
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.43 E-value=5.3e-13 Score=117.38 Aligned_cols=135 Identities=19% Similarity=0.124 Sum_probs=114.5
Q ss_pred cCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 23 DTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 23 ~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
.|......+++++|+.+|++++++.| ..+. ...... .....+..+..|.++|.+++..
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~~~-----------~~~~~~--------~~~~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVE---GSRA-----------AAEDAD--------GAKLQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHH---HHHH-----------HSCHHH--------HGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhh---cCcc-----------ccChHH--------HHHHHHHHHHHHHHHHHHHHhc
Confidence 34455678999999999999998766 2110 000001 1235678889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
++|++|+.+|+++++++|.++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++++++...
T Consensus 287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887653
No 174
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=2.7e-11 Score=102.83 Aligned_cols=155 Identities=9% Similarity=0.013 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY-- 156 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-- 156 (314)
.+.....+...+..+...|+|++|+..|++++...+... ..++.+|.++...|++++|+.++++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 345566778899999999999999999999999887654 346778999999999999999999999876543
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHH
Q psy4130 157 ----AKAYGRMGLAYTQMNDYKAALEAYTKAA---ELDPNDP----LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMST 225 (314)
Q Consensus 157 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (314)
..++..+|.++...|++++|+.+|++++ +..|++. .++.++|.++..+|++++|. ..+..+..
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al------~~~~kal~ 224 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL------YQVNKAIE 224 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH------HHHHHHHH
Confidence 5789999999999999999999999999 5566643 68999999999999999997 66666655
Q ss_pred hccC--C----hHHHHHHHHhhcCCC
Q psy4130 226 KVLS--D----PSIQQVFGELFANPG 245 (314)
Q Consensus 226 ~~~~--~----p~~~~~l~~~~~~~~ 245 (314)
.... + ..+...++.++...+
T Consensus 225 ~~~~~~~~~~~~~~~~~lg~~y~~~g 250 (293)
T 2qfc_A 225 ISCRINSMALIGQLYYQRGECLRKLE 250 (293)
T ss_dssp HHHHTTBCSSHHHHHHHHHHHHHHTT
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 4322 1 355666676666543
No 175
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.43 E-value=5.1e-12 Score=115.25 Aligned_cols=191 Identities=17% Similarity=0.132 Sum_probs=151.4
Q ss_pred hhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHh----c-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHh---
Q psy4130 30 KEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLY----Y-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQ--- 101 (314)
Q Consensus 30 ~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--- 101 (314)
.+++++|+++|+++++..+ ......++.+|... . ...+..+...... ..++.+++.+|.++..
T Consensus 200 ~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE------QGNSIAQFRLGYILEQGLA 270 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHTTT
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHCCCC
Confidence 5788888888888877655 45566666666641 1 2233333222111 1346788999999998
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---C
Q psy4130 102 -QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-----KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN---D 172 (314)
Q Consensus 102 -~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~ 172 (314)
.+++++|+.+|+++++. .++.+++.+|.+|... +++++|+.+|+++++. .++.+++.+|.++...| +
T Consensus 271 ~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHH
T ss_pred CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCccc
Confidence 89999999999999865 6788999999999998 9999999999999986 56789999999999866 8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 173 YKAALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 173 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+++|+.+|+++++. .++.++++++.++.. .+++++|. ..+..++.. .+|..+..++.++..
T Consensus 347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~------~~~~~A~~~--~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAA------IWMRKAAEQ--GLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH------HHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH------HHHHHHHhC--CCHHHHHHHHHHHHc
Confidence 99999999999987 679999999999999 88999997 777666653 578889899988765
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.41 E-value=3.4e-11 Score=103.73 Aligned_cols=181 Identities=12% Similarity=-0.038 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
..++...++..+..+....+..++|+..++++|.++|.+..+|+.++.++..++ .+++++..+.+++..+|++..+|..
T Consensus 49 y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~h 128 (349)
T 3q7a_A 49 YSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHH 128 (349)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 445566667776667777777789999999999999999999999999999999 5999999999999999999999999
Q ss_pred HHHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc--------cCCCCCCCcchHHHHHHhccCChH
Q psy4130 163 MGLAYTQM-N-DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS--------SASGSGGVFPGLSEMSTKVLSDPS 232 (314)
Q Consensus 163 lg~~~~~~-g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~p~ 232 (314)
++.++... + ++++++..+.++++.+|+|..+|...+.+....+.++ ++. ......+..-+.|..
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eEL------e~~~k~I~~dp~N~S 202 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSEL------DWCNEMLRVDGRNNS 202 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHH------HHHHHHHHHCTTCHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHH------HHHHHHHHhCCCCHH
Confidence 99999998 8 9999999999999999999999999999999999988 565 666777888888999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhChH
Q psy4130 233 IQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPE 278 (314)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~ 278 (314)
.|...+.++...+... . ...+.+..-....+....+|+
T Consensus 203 AW~~R~~lL~~l~~~~----~----~~~~~~eELe~~~~aI~~~P~ 240 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAE----T----SSRSLQDELIYILKSIHLIPH 240 (349)
T ss_dssp HHHHHHHHHTTSTTCC----C----CHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhccccc----c----chHHHHHHHHHHHHHHHhCCC
Confidence 9999999988764211 1 123334444455555666775
No 177
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=2.6e-11 Score=112.32 Aligned_cols=145 Identities=11% Similarity=0.055 Sum_probs=129.2
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 95 LGNTAMQQDKP-EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN----------YKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 95 ~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
........+++ ++|+..+++++..+|++..+|+.++.++...++ +++++.+++++++.+|++..+|+.+
T Consensus 34 ~~~~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 34 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 33344556655 577999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-ccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 164 GLAYTQMN--DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN-NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 164 g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
+.++...+ +++++++.+.++++++|.+..+|...+.+....| .++++. ..+..+++..+.|...|...+.+
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el------~~~~~~I~~~p~n~saW~~r~~l 187 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEEL------AFTDSLITRNFSNYSSWHYRSCL 187 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHH------HHHHTTTTTTCCCHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHH------HHHHHHHHHCCCCccHHHHHHHH
Confidence 99999999 7799999999999999999999999999999999 777776 66667777778888999999988
Q ss_pred hcCCC
Q psy4130 241 FANPG 245 (314)
Q Consensus 241 ~~~~~ 245 (314)
+....
T Consensus 188 l~~l~ 192 (567)
T 1dce_A 188 LPQLH 192 (567)
T ss_dssp HHHHS
T ss_pred HHhhc
Confidence 76643
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=2.8e-12 Score=108.46 Aligned_cols=105 Identities=17% Similarity=0.103 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy4130 120 NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199 (314)
Q Consensus 120 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 199 (314)
|.++..+..+|.++...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..|+++++++|++..+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCCCcchHHHHHHhccCC
Q psy4130 200 AMSNLNNSSSASGSGGVFPGLSEMSTKVLSD 230 (314)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 230 (314)
++..+|++++|. ..+..+....+.+
T Consensus 81 ~~~~~g~~~~A~------~~~~~al~l~p~~ 105 (281)
T 2c2l_A 81 CQLEMESYDEAI------ANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHTTCHHHHH------HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHH------HHHHHHHHhCccc
Confidence 999999999998 7777777666654
No 179
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.38 E-value=2e-12 Score=109.88 Aligned_cols=127 Identities=14% Similarity=0.070 Sum_probs=105.7
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
...+++++|+.+|++++.+.+.. .+. .....++..+|.++...|++++
T Consensus 126 ~~~~~~~~Ai~~~~~al~~~~~~-~~~-------------------------------~~~~~~~~~lg~~y~~~g~~~~ 173 (293)
T 3u3w_A 126 LKKVDYEYCILELKKLLNQQLTG-IDV-------------------------------YQNLYIENAIANIYAENGYLKK 173 (293)
T ss_dssp TTSSCHHHHHHHHHHHHHTCCCC-SCT-------------------------------THHHHHHHHHHHHHHHTTCHHH
T ss_pred HcccCHHHHHHHHHHHHHHhccc-ccH-------------------------------HHHHHHHHHHHHHHHHcCCHHH
Confidence 44678899999999999876622 110 1235579999999999999999
Q ss_pred HHHHHHHHHHc-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcC-CH
Q psy4130 108 AVIEYSKAIDC-------DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMGLAYTQMN-DY 173 (314)
Q Consensus 108 A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g-~~ 173 (314)
|+.+|+++++. .+....+++++|.+|..+|+|++|+.++++++.+.+.. +.+++++|.++..+| .+
T Consensus 174 A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 253 (293)
T 3u3w_A 174 GIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcH
Confidence 99999999953 12234588999999999999999999999999986543 789999999999999 57
Q ss_pred HHHHHHHHHHHhh
Q psy4130 174 KAALEAYTKAAEL 186 (314)
Q Consensus 174 ~~A~~~~~~al~~ 186 (314)
++|+.+|++++.+
T Consensus 254 ~~A~~~~~~Al~i 266 (293)
T 3u3w_A 254 AEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999975
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.38 E-value=1.6e-11 Score=102.53 Aligned_cols=131 Identities=11% Similarity=-0.055 Sum_probs=110.2
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
..|++++|++.|+.++...| .+. .++.+|.++++.++|++|
T Consensus 114 ~~g~y~eA~~~l~~~~~~~p--------------------------------------~~~-~~~~~a~l~~~~~r~~dA 154 (282)
T 4f3v_A 114 AQGNYADAMEALEAAPVAGS--------------------------------------EHL-VAWMKAVVYGAAERWTDV 154 (282)
T ss_dssp HHTCHHHHHHHHTSSCCTTC--------------------------------------HHH-HHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCC--------------------------------------chH-HHHHHHHHHHHcCCHHHH
Confidence 36788888888877776666 234 688899999999999999
Q ss_pred HHHHHHHHHcC-CCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 109 VIEYSKAIDCD-NSN-PVYYCNRAASNNKLKNYKLALRDCQIAIKID--PH-YAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 109 ~~~~~~al~~~-p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
+..|++++... |.. ..+++++|.++..+|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|...|+++
T Consensus 155 ~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 155 IDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887653 211 3589999999999999999999999999654 55 6789999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHH
Q psy4130 184 AELDPNDPLYANNMQA 199 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~ 199 (314)
+..+|+ ..++..|..
T Consensus 235 ~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 235 QTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHSCC-HHHHHHHHC
T ss_pred HhcCCc-HHHHHHHhC
Confidence 999999 877766643
No 181
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=4.1e-12 Score=111.41 Aligned_cols=151 Identities=7% Similarity=-0.106 Sum_probs=110.3
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
...|++++|+..+++++...| .... .....++..+|.++...|++++
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~---~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~ 71 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELP---PGWF------------------------------YSRIVATSVLGEVLHCKGELTR 71 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCC---TTCH------------------------------HHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCC---CCch------------------------------hHHHHHHHHHHHHHHhcCcHHH
Confidence 358899999999999998887 2211 1123467777788888888888
Q ss_pred HHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCH
Q psy4130 108 AVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKID--------PHYAKAYGRMGLAYTQMNDY 173 (314)
Q Consensus 108 A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~ 173 (314)
|+..+++++.+.|... .++.++|.++...|++++|+..+++++.+. |....++..+|.++...|++
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 8888888877654322 235677888888888888888888887764 33456677788888888888
Q ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhcccccCC
Q psy4130 174 KAALEAYTKAAELDPND-----PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 174 ~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~ 211 (314)
++|+..+++++.+.|.. ..++..++.++...|++++|.
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 194 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNAR 194 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888776642 356777888888888888775
No 182
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=4.6e-12 Score=114.50 Aligned_cols=187 Identities=14% Similarity=0.097 Sum_probs=129.8
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc---h-hhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc----C
Q psy4130 32 GIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY---K-DEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ----D 103 (314)
Q Consensus 32 ~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 103 (314)
..+.+..+++.+...+| . ..+.++.+|...+ + ..+..+. .+.....+..+..++.+|.+|... +
T Consensus 160 ~~~~a~~~~~~a~~~~~---~-a~~~Lg~~~~~~g~~~~~~~A~~~~----~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 160 HLDDVERICKAALNTTD---I-CYVELATVYQKKQQPEQQAELLKQM----EAGVSRGTVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GHHHHHHHHHHHTTTCT---T-HHHHHHHHHHHTTCHHHHHHHHHHH----HHHHHTTCSCHHHHHHHHHHHTCGGGSSC
T ss_pred CHHHHHHHHHHHHcCCH---H-HHHHHHHHHHHcCCcccHHHHHHHH----HHHHHCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 55666777777777777 4 5667777666644 2 1222222 112223344455567888888654 6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-H--HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----CHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAAS-N--NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-----DYKA 175 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~~~~ 175 (314)
++++|+.+|+++. |.++.+++++|.+ + ...+++++|+.+|++++.. .++.++++||.+|. .| ++++
T Consensus 232 d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 232 DEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp CHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred CHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 8888888888887 7888888888888 4 4678888888888888865 47888888888887 55 8888
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 176 ALEAYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
|+.+|+++. |.++.++++||.++.. ..++++|. ..+...+. ..+++....++.++..
T Consensus 306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~------~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 306 AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKAL------DHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHH------HHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHH------HHHHHHHh--hChHHHHHHHHHHHHh
Confidence 888888887 7888888888888776 23556665 45544443 4567777777777665
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.37 E-value=6.4e-12 Score=88.85 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=72.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q psy4130 118 CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN--DPLYAN 195 (314)
Q Consensus 118 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 195 (314)
.+|+++.+++++|.+|...|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|+..|++++++.|. +.....
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 468888888899999999999999999999999999988888999999999999999999999988888763 455666
Q ss_pred HHHHHHHHhcccc
Q psy4130 196 NMQAAMSNLNNSS 208 (314)
Q Consensus 196 ~l~~~~~~~~~~~ 208 (314)
.+..++...+...
T Consensus 82 ~l~~~l~~~~~~~ 94 (100)
T 3ma5_A 82 ELQDAKLKAEGLE 94 (100)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHccccc
Confidence 6666666655443
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.36 E-value=2.3e-12 Score=98.32 Aligned_cols=131 Identities=19% Similarity=0.147 Sum_probs=109.6
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
....|++++|+.+|++++++.+.. . .......++..+|.++...|+++
T Consensus 19 ~~~~~~~~~A~~~~~~al~~~~~~-~-------------------------------~~~~~~~~~~~l~~~~~~~g~~~ 66 (164)
T 3ro3_A 19 HYLLGNFRDAVIAHEQRLLIAKEF-G-------------------------------DKAAERIAYSNLGNAYIFLGEFE 66 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHH-T-------------------------------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHh-C-------------------------------CchHHHHHHHHHHHHHHHcCCHH
Confidence 345789999999999999877611 0 11233568999999999999999
Q ss_pred HHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHH
Q psy4130 107 QAVIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYK 174 (314)
Q Consensus 107 ~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~ 174 (314)
+|+.+|++++...+.. ..++.++|.++...|++++|+..+++++.+.+. ...++..+|.++...|+++
T Consensus 67 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 146 (164)
T 3ro3_A 67 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 146 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence 9999999999876543 568899999999999999999999999987432 3578899999999999999
Q ss_pred HHHHHHHHHHhhCCC
Q psy4130 175 AALEAYTKAAELDPN 189 (314)
Q Consensus 175 ~A~~~~~~al~~~p~ 189 (314)
+|+..+++++++...
T Consensus 147 ~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 147 QAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987554
No 185
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.35 E-value=1.9e-12 Score=91.15 Aligned_cols=92 Identities=17% Similarity=0.162 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV-YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 170 (314)
.+..|..+...|++++|+..|+++++.+|.++. +++++|.++...|++++|+.+|+++++++|++..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 356788888899999999999999999999888 89999999999999999999999999999988887754
Q ss_pred CCHHHHHHHHHHHHhhCCCCH
Q psy4130 171 NDYKAALEAYTKAAELDPNDP 191 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~ 191 (314)
+.+.+++..|++++..+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567778888888887777653
No 186
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=4e-11 Score=105.09 Aligned_cols=196 Identities=9% Similarity=-0.044 Sum_probs=138.2
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCc-----hhhHHHHHHHhchh-hhhhhhccCCC---C-CChhhHHHHHHHHHH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPAS-----NVDIESLFQLYYKD-EVLQWYSNINF---S-PTEEVKIEAEKYKNL 95 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~-----~~~l~~~~~~~~~~-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 95 (314)
.....|++++|+..+++++.+.|...... ...++.++...++. ++......... . .....+.....+..+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 34568999999999999998877442211 12344455544432 22222111110 0 001114566788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHH-----HH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDCDNS-----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYG-----RM 163 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~-----~l 163 (314)
|.++...|++++|+.++++++...+. ...++.++|.++...|++++|+..+++++.+.+. ....+. .+
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 99999999999999999999998765 2467889999999999999999999999987432 211121 34
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 164 GLAYTQMNDYKAALEAYTKAAELDPND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 164 g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
+.++...|++++|...+++++...|.. ...+..++.++...|++++|. ..+.......
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~------~~l~~a~~~~ 283 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE------IVLEELNENA 283 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHH
Confidence 456889999999999999999877653 336788999999999999997 6665555443
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.28 E-value=5.4e-11 Score=86.07 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=83.4
Q ss_pred HHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy4130 35 VAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSK 114 (314)
Q Consensus 35 ~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 114 (314)
.|++.|+++++.+| .+ +..++.+|.++...|++++|+..|++
T Consensus 3 ~a~~~~~~al~~~p---~~-----------------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~ 44 (115)
T 2kat_A 3 AITERLEAMLAQGT---DN-----------------------------------MLLRFTLGKTYAEHEQFDAALPHLRA 44 (115)
T ss_dssp CHHHHHHHHHTTTC---CC-----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC---Cc-----------------------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 57888899999888 33 34789999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHc
Q psy4130 115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGRMGLAYTQM 170 (314)
Q Consensus 115 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~ 170 (314)
++..+|.++.+|+++|.++...|++++|+..|++++.++|. +......+...+..+
T Consensus 45 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 45 ALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999875 344444454444433
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.26 E-value=2.6e-11 Score=85.64 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--YAKAYGR 162 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~ 162 (314)
+|.++.+++.+|.+++..|++++|+..|+++++++|.++.+|+++|.+|...|++++|+..|++++++.|. +......
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999998764 3344444
Q ss_pred HHHHHHH
Q psy4130 163 MGLAYTQ 169 (314)
Q Consensus 163 lg~~~~~ 169 (314)
+..++..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.23 E-value=3.1e-10 Score=85.15 Aligned_cols=122 Identities=15% Similarity=0.086 Sum_probs=104.4
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
..+++++|+++|+++.+..+ .. +. +|.++...+.+++|
T Consensus 7 ~~~d~~~A~~~~~~aa~~g~---~~-------------------------------------a~--lg~~y~~g~~~~~A 44 (138)
T 1klx_A 7 VKKDLKKAIQYYVKACELNE---MF-------------------------------------GC--LSLVSNSQINKQKL 44 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---TT-------------------------------------HH--HHHHTCTTSCHHHH
T ss_pred CccCHHHHHHHHHHHHcCCC---Hh-------------------------------------hh--HHHHHHcCCCHHHH
Confidence 46789999999999987654 11 22 78888888888889
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy4130 109 VIEYSKAIDCDNSNPVYYCNRAASNNK----LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALEAY 180 (314)
Q Consensus 109 ~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~ 180 (314)
+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|
T Consensus 45 ~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 45 FQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 9999999987 689999999999999 89999999999999987 689999999999999 99999999999
Q ss_pred HHHHhhCCCCHHHHHHHH
Q psy4130 181 TKAAELDPNDPLYANNMQ 198 (314)
Q Consensus 181 ~~al~~~p~~~~~~~~l~ 198 (314)
+++.+.. ++.+..+|+
T Consensus 121 ~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 121 EKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHTT--CHHHHHHC-
T ss_pred HHHHHCC--CHHHHHHHh
Confidence 9999874 556665554
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.17 E-value=1.1e-10 Score=105.79 Aligned_cols=137 Identities=13% Similarity=0.056 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc--
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHY-- 156 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~-- 156 (314)
....+..+..+|+|++|+..|+++++. .|++ ...+.++|.+|..+|+|++|+..+++++.+ .|++
T Consensus 312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 445556678899999999999999985 3444 467899999999999999999999999987 3444
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 157 -AKAYGRMGLAYTQMNDYKAALEAYTKAAEL-----DPNDP---LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 157 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
...+.+||.+|..+|++++|+..|++|+++ .|+++ .....++.++..++.+.+|. ..+..+....
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae------~~~~~~~~~~ 465 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE------FMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 478999999999999999999999999975 56654 45678999999999999996 6665655555
Q ss_pred cCChHHH
Q psy4130 228 LSDPSIQ 234 (314)
Q Consensus 228 ~~~p~~~ 234 (314)
..+-.+|
T Consensus 466 ~~~~~~~ 472 (490)
T 3n71_A 466 LNNQPMQ 472 (490)
T ss_dssp HTC----
T ss_pred hcCCCCc
Confidence 5555554
No 191
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=1.5e-09 Score=91.89 Aligned_cols=185 Identities=9% Similarity=-0.060 Sum_probs=133.5
Q ss_pred HHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhh--HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy4130 36 AVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEV--KIEAEKYKNLGNTAMQQDKPEQAVIEY 112 (314)
Q Consensus 36 Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~ 112 (314)
|+..|++.++..+.. ....+.++.++...++. ++..+.... +... ....+.+...+.++...|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~~~~-~~~~~~la~i~~~~g~~eeAL~~l~~~----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNS-PYELYLLATAQAILGDLDKSLETCVEG----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHH----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHH----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 688888888775422 22334556666665543 344442211 1111 367788999999999999999999999
Q ss_pred HHHHHcCCC----CHHHHHHH--HHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 113 SKAIDCDNS----NPVYYCNR--AASNNKLK--NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 113 ~~al~~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
++..+.+|+ +-.+...+ |.+....| ++.+|...|+++....|+.......+. ++..+|++++|...++.++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 999999883 12233444 54566666 999999999999888887333233333 8999999999999999888
Q ss_pred hh----------CCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHH
Q psy4130 185 EL----------DPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQ 234 (314)
Q Consensus 185 ~~----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~ 234 (314)
+. +|+++.++.++..+...+|+ +|. ..+.++.+..|.+|-+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~------~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTE------DLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTH------HHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHH------HHHHHHHHhCCCChHHH
Confidence 77 58899999999999999997 665 66667777778888654
No 192
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.16 E-value=1.8e-10 Score=91.59 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=99.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcCC
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK------IDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~ 172 (314)
++..|++++|...++......+....++..+|.++...|++++|+..+++++. ..|....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 45689999999966555443336778999999999999999999999999999 445567899999999999999
Q ss_pred HHHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc
Q psy4130 173 YKAALEAYTKAAEL---DPND----PLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 173 ~~~A~~~~~~al~~---~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
+++|+..+++++.+ .+++ ..++.+++.++...|++++|. ..+.+.....
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~------~~~~~al~~~ 137 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGAR------QEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHH------HHHHHHHHHH
Confidence 99999999999998 4433 457899999999999999997 6666665543
No 193
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.15 E-value=1.3e-09 Score=107.33 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=104.1
Q ss_pred CCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchh-hhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhc
Q psy4130 24 TLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKD-EVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQ 102 (314)
Q Consensus 24 ~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 102 (314)
|......|.+++|..+|+++- .+ .. .+..++...+.. .+.... .....+.+|+.+|.++...
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~--~~---~~---A~~VLie~i~nldrAiE~A---------ervn~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD--VN---TS---AVQVLIEHIGNLDRAYEFA---------ERCNEPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC--CH---HH---HHHHHHHHHhhHHHHHHHH---------HhcCCHHHHHHHHHHHHhC
Confidence 344556888899999999972 11 11 122233222221 122211 1123467888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------------------
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH--------------------------- 155 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------------------------- 155 (314)
|++++|+..|.++ +++..|...|.++.+.|+|++|+++|..|.+..+.
T Consensus 1119 G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~ 1193 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP 1193 (1630)
T ss_pred CCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCC
Confidence 8888888888775 77888888888888888888888888877765533
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+...+..+|..+...|+|++|+.+|.++ ..|..++.++.++|++++|+
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHH
Confidence 1234556777777777777777777764 35666666666666666665
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.15 E-value=4.6e-10 Score=78.63 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=70.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHH
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAK-AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA--NNMQAAMS 202 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~ 202 (314)
.+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++ ..+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999 999999999999999999999999999999999887 44444444
Q ss_pred H
Q psy4130 203 N 203 (314)
Q Consensus 203 ~ 203 (314)
.
T Consensus 83 ~ 83 (99)
T 2kc7_A 83 F 83 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.14 E-value=4.1e-10 Score=100.48 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=125.1
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
..|++++|++.|.++++..|...+... ..............++..+|.+|...|++++|
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAA---------------------GASVDDKRRNEQETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSS---------------------SSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHH---------------------HHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHH
Confidence 478999999999999999995533211 00111233344566788999999999999999
Q ss_pred HHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHH
Q psy4130 109 VIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLALRDCQIAIKIDP------HYAKAYGRMGLAYTQMNDYKAA 176 (314)
Q Consensus 109 ~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A 176 (314)
++.|++++...+... .+...++.++...|++++|+..+++++...+ .....+..+|.++...|++++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 154 (434)
T 4b4t_Q 75 REFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDS 154 (434)
T ss_dssp HHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHH
Confidence 999999988755432 3456678888888999999999999887642 3467888999999999999999
Q ss_pred HHHHHHHHhhC------CCCHHHHHHHHHHHHHhcccccCC
Q psy4130 177 LEAYTKAAELD------PNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 177 ~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+..+++++... |....++..++.++..+|++++|.
T Consensus 155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 195 (434)
T 4b4t_Q 155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSK 195 (434)
T ss_dssp HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999888752 233568899999999999999986
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.11 E-value=2.5e-10 Score=103.48 Aligned_cols=131 Identities=11% Similarity=0.000 Sum_probs=109.8
Q ss_pred cchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHH
Q psy4130 27 AESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106 (314)
Q Consensus 27 ~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 106 (314)
...+|++++|+..|++++++.- . ......|..+..+.++|.+|..+|+|+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~---~---------------------------~lg~~Hp~~a~~~~nLa~~y~~~g~~~ 368 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQE---P---------------------------VFADTNLYVLRLLSIASEVLSYLQAYE 368 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHT---T---------------------------TBCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHH---H---------------------------hcCCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 3468999999999999987654 1 114456778889999999999999999
Q ss_pred HHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHc
Q psy4130 107 QAVIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHYA---KAYGRMGLAYTQM 170 (314)
Q Consensus 107 ~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~~ 170 (314)
+|+.+|++++.. .|++ ...+.++|.+|..+|++++|+..|++|+.+ .|+++ .....++.++..+
T Consensus 369 eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 369 EASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 999999999975 3444 457899999999999999999999999976 46665 5667899999999
Q ss_pred CCHHHHHHHHHHHHhhC
Q psy4130 171 NDYKAALEAYTKAAELD 187 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~ 187 (314)
+.+++|...|.++.+..
T Consensus 449 ~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 449 RMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987643
No 197
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=9.3e-10 Score=93.06 Aligned_cols=139 Identities=12% Similarity=-0.013 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----cHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH----YAKAYGR 162 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~ 162 (314)
...+..+|.++...|++++|+..+.+++..+| .+.+++..++.++.++|+.+.|.+.+++..+.+|+ +......
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHH
Confidence 34567999999999999999999999999987 88999999999999999999999999999999993 2333444
Q ss_pred H--HHHHHHcC--CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh----------
Q psy4130 163 M--GLAYTQMN--DYKAALEAYTKAAELDPN--DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK---------- 226 (314)
Q Consensus 163 l--g~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 226 (314)
+ |.+....| ++.+|...|+++....|+ .+..+.+ ++..+|++++|. ..+..+.+.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe------~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQ------GIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHH------HHHHHHHSHHHHTTTCHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHH------HHHHHHHHhcccccccccC
Confidence 4 44466666 999999999999988887 3334444 899999999995 444433333
Q ss_pred ccCChHHHHH
Q psy4130 227 VLSDPSIQQV 236 (314)
Q Consensus 227 ~~~~p~~~~~ 236 (314)
-+.||+....
T Consensus 251 ~p~~~~~LaN 260 (310)
T 3mv2_B 251 VLYKPTFLAN 260 (310)
T ss_dssp HSSHHHHHHH
T ss_pred CCCCHHHHHH
Confidence 2667776533
No 198
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.09 E-value=1.6e-09 Score=81.27 Aligned_cols=101 Identities=6% Similarity=-0.019 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK---NYKLALRDCQIAIKID-P-HYAKAYGRMGLAYTQMNDYKAALEA 179 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~~~ 179 (314)
...+.+.|.+.+..++.+..+.+++|+++.+.+ +..+++..++..++.+ | ++.+++|++|..++++|+|++|+.+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456778888888889999999999999999988 7779999999999999 7 5689999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhc
Q psy4130 180 YTKAAELDPNDPLYANNMQAAMSNLN 205 (314)
Q Consensus 180 ~~~al~~~p~~~~~~~~l~~~~~~~~ 205 (314)
++++++++|++..+......+..+..
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAMK 119 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999888877766653
No 199
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.07 E-value=5.6e-09 Score=102.93 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=109.9
Q ss_pred chhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHH
Q psy4130 28 ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQ 107 (314)
Q Consensus 28 ~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (314)
...|++++|+++|..+.+..++. .....++..|.+....+....+. ..+ +...+..+|..++..|+|++
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI--------~~~-n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI--------NGP-NNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHH--------hCC-CHHHHHHHHHHHHhcCCHHH
Confidence 34556666666666666555411 12223444444433222222110 111 23457789999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------------------------CcHHHHHH
Q psy4130 108 AVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP-------------------------HYAKAYGR 162 (314)
Q Consensus 108 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------------~~~~~~~~ 162 (314)
|+.+|.++ ..|..+|.+|.++|++++|++++++|....+ .+++.+..
T Consensus 1214 A~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLee 1285 (1630)
T 1xi4_A 1214 AKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE 1285 (1630)
T ss_pred HHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHH
Confidence 99999986 4789999999999999999999999855433 13445557
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 203 (314)
++..|...|.|++|+..+++++.++|.+...+..++.++.+
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 77788889999999999999999999888888888877765
No 200
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.05 E-value=3.2e-10 Score=100.16 Aligned_cols=184 Identities=10% Similarity=0.073 Sum_probs=88.7
Q ss_pred CcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCH
Q psy4130 26 NAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKP 105 (314)
Q Consensus 26 ~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (314)
.....|++++|+.+++.+.+..++ ......+..+|...++...... .... | +...|..+|..++..|.|
T Consensus 70 ~ae~~g~~EeAi~yl~~ark~~~~--~~i~~~Li~~Y~Klg~l~e~e~---f~~~-----p-n~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 70 AANTSGNWEELVKYLQMARKKARE--SYVETELIFALAKTNRLAELEE---FING-----P-NNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp -----------------------------------------CHHHHTT---TTTC-----C-----------------CT
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHhCCHHHHHH---HHcC-----C-cHHHHHHHHHHHHHcCCH
Confidence 445577888888888887775441 1112233334554443322221 1111 1 224899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
++|+.+|.++ ..|..+|.|+.++|+|++|++.++++ .++..|...+.++...|+|+.|..+... +.
T Consensus 139 eeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~ 204 (449)
T 1b89_A 139 DAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV 204 (449)
T ss_dssp TTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TT
T ss_pred HHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HH
Confidence 9999999976 46889999999999999999999999 4678888888888888888888666654 33
Q ss_pred hCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 186 LDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 186 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
.+|+ -...+..+|.+.|++++|+ ..+......-.....++..++.++..
T Consensus 205 ~~ad---~l~~lv~~Yek~G~~eEai------~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 205 VHAD---ELEELINYYQDRGYFEELI------TMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TCHH---HHHHHHHHHHHTTCHHHHH------HHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred hCHh---hHHHHHHHHHHCCCHHHHH------HHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 4443 3445777788888888776 44444444444455666666666555
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=2.5e-09 Score=80.17 Aligned_cols=118 Identities=16% Similarity=0.117 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALE 178 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~ 178 (314)
+++++|+.+|+++.+..... +. +|.+|...+.+++|+.+|+++.+. .++.++++||.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 47899999999999987444 34 999999999999999999999987 789999999999999 899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----hcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130 179 AYTKAAELDPNDPLYANNMQAAMSN----LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV 236 (314)
Q Consensus 179 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~ 236 (314)
+|+++.+. .++.+.++|+.++.. .+++++|. ..+..++.. .++.....
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~------~~~~~Aa~~--g~~~A~~~ 134 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAV------KTFEKACRL--GSEDACGI 134 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH------HHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHH------HHHHHHHHC--CCHHHHHH
Confidence 99999987 689999999999999 78888886 555555443 45544433
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.01 E-value=2.8e-09 Score=73.89 Aligned_cols=72 Identities=8% Similarity=0.073 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 119 DNSNPVYYCNRAASNNKLKN---YKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 119 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68888889999998876665 6889999999999999999999999999999999999999999999988874
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.97 E-value=6.5e-09 Score=89.53 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=68.7
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy4130 115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192 (314)
Q Consensus 115 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 192 (314)
++..+|.++.++..++.++...|++++|+..+++|+.++|. ..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 34667899999999999998899999999999999999974 778889999999999999999999999999998653
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.95 E-value=9.6e-09 Score=88.46 Aligned_cols=144 Identities=6% Similarity=-0.066 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH-------HHHHH-HHH--HHHHhCCCc
Q psy4130 90 EKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY-------KLALR-DCQ--IAIKIDPHY 156 (314)
Q Consensus 90 ~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-------~~A~~-~~~--~al~~~p~~ 156 (314)
.-++..|..+...+ ++.+|+.+|+++++++|+++.+|..++.+|.....+ ..++. .++ .++..+|.+
T Consensus 197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~ 276 (372)
T 3ly7_A 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL 276 (372)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence 34666677776654 468999999999999999999999999988643211 11111 222 233567999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHH
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQV 236 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~ 236 (314)
+.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|. +.+..+.+.-|..|. ..+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~------e~~~~AlrL~P~~~t-~~~ 348 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAA------DAYLTAFNLRPGANT-LYW 348 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHH------HHHHHHHHHSCSHHH-HHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHH------HHHHHHHhcCCCcCh-HHH
Confidence 999999999999999999999999999999975 678899999999999999998 888888887776664 555
Q ss_pred HHHhh
Q psy4130 237 FGELF 241 (314)
Q Consensus 237 l~~~~ 241 (314)
..++.
T Consensus 349 ~~~l~ 353 (372)
T 3ly7_A 349 IENGI 353 (372)
T ss_dssp HHHSS
T ss_pred HhCce
Confidence 55553
No 205
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.92 E-value=1.4e-08 Score=72.07 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 162 (314)
..++.+|..++..++|..|+.+|++|++.. +..+.++..+|.++.++|+++.|+..++++++++|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 446667777777777777777777776642 2234455556666666666666666666666666655555554
Q ss_pred HH
Q psy4130 163 MG 164 (314)
Q Consensus 163 lg 164 (314)
++
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.92 E-value=2.4e-08 Score=70.84 Aligned_cols=84 Identities=15% Similarity=0.028 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKID-------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (314)
++.-.+.+|..++..++|..|+.+|++|++.. +..+.++..+|.+++++|+++.|+..++++++++|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45567899999999999999999999999973 35678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q psy4130 195 NNMQAAMSNLN 205 (314)
Q Consensus 195 ~~l~~~~~~~~ 205 (314)
.++..+.....
T Consensus 84 ~n~~~~~~~~~ 94 (104)
T 2v5f_A 84 GNLKYFEYIMA 94 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 99885555443
No 207
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.86 E-value=1.2e-08 Score=96.03 Aligned_cols=202 Identities=11% Similarity=-0.018 Sum_probs=146.6
Q ss_pred cHHHHHHHHHHHcCCCCCCCCCchhhHH--HHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHHH
Q psy4130 32 GIEVAVECLCKAYDIPDNIDPASNVDIE--SLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAV 109 (314)
Q Consensus 32 ~~~~Ai~~~~~al~~~p~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 109 (314)
..+.....|++++...| ..+.+++. .+....+....+. ..++.++....|.....|...+......|+++.|.
T Consensus 324 ~~~Rv~~~Ye~aL~~~p---~~~~lW~~ya~~~~~~~~~~~a~--r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 324 HKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDSTVI--TKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp HHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHSCCTTHH--HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCcHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34566788999999999 44444443 3444443321111 01223333445566677888899999999999999
Q ss_pred HHHHHHHHc-----------CCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Q psy4130 110 IEYSKAIDC-----------DNS-----------NPVYYCNRAASNNKLKNYKLALRDCQIAIKI-DPHYAKAYGRMGLA 166 (314)
Q Consensus 110 ~~~~~al~~-----------~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 166 (314)
..|++++.. .|. ...+|...+.+..+.++.+.|...|.+|++. .+.....|...+.+
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l 478 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI 478 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999875 243 3457888888888889999999999999987 44556777777777
Q ss_pred HHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC---ChHHHHHHHHhhc
Q psy4130 167 YTQMN-DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS---DPSIQQVFGELFA 242 (314)
Q Consensus 167 ~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~p~~~~~l~~~~~ 242 (314)
....+ +++.|...|+++++..|+++..|..++......|+.+.|. ..+..++...+. ...+|..+..+..
T Consensus 479 E~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR------~lferal~~~~~~~~~~~lw~~~~~fE~ 552 (679)
T 4e6h_A 479 EYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK------SLFESSIDKISDSHLLKMIFQKVIFFES 552 (679)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH------HHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 66665 4899999999999999999999988999888999998887 666666666652 3367777777755
Q ss_pred CC
Q psy4130 243 NP 244 (314)
Q Consensus 243 ~~ 244 (314)
..
T Consensus 553 ~~ 554 (679)
T 4e6h_A 553 KV 554 (679)
T ss_dssp HT
T ss_pred Hc
Confidence 53
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.83 E-value=1.2e-08 Score=70.66 Aligned_cols=72 Identities=10% Similarity=0.059 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q psy4130 86 KIEAEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA 157 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 157 (314)
|.++..+..+|.+++..++ .++|...++++++++|+++.+++.+|..++..|+|++|+..+++++..+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4567889999999986665 79999999999999999999999999999999999999999999999999843
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.80 E-value=3.4e-08 Score=88.23 Aligned_cols=112 Identities=12% Similarity=-0.024 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHY--- 156 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~--- 156 (314)
......+..+|+|++|+..|+++++. .|++ ...+.++|.+|..+|+|++|+.++++++.+ .|++
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 33445566789999999999999975 3444 457899999999999999999999999976 3444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHh
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAEL-----DPNDPL---YANNMQAAMSNL 204 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~ 204 (314)
...+++||.+|..+|++++|+..|++|+++ .|+++. ++.+|+.+...+
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999976 566654 445666666544
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.8e-08 Score=89.80 Aligned_cols=123 Identities=11% Similarity=0.006 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCc
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD------NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI------DPHY 156 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~ 156 (314)
......+|.++...|++++|+..+++++... +....++.++|.+|...|+|.+|+..+.+++.. .|..
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 174 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSL 174 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhH
Confidence 4467778888889999999999999998753 234678899999999999999999999999876 3345
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C----HHHHHHHHHHHHHhcccccCC
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN---D----PLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~----~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..++..+|.++...|++++|...+++++...+. . ...+..++.++...+++.+|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 175 VDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 689999999999999999999999999987542 2 245667777777888888876
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.79 E-value=5.6e-08 Score=86.75 Aligned_cols=99 Identities=17% Similarity=0.158 Sum_probs=82.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---HHH
Q psy4130 96 GNTAMQQDKPEQAVIEYSKAIDC-----DNSNP---VYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHY---AKA 159 (314)
Q Consensus 96 g~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~~ 159 (314)
.......|+|++|+..|+++++. .|+++ ..+.++|.+|..+|+|++|+.++++++.+ .|++ ...
T Consensus 305 ~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 384 (433)
T 3qww_A 305 FRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASM 384 (433)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 33344578999999999999984 45554 57889999999999999999999999977 3444 478
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH
Q psy4130 160 YGRMGLAYTQMNDYKAALEAYTKAAEL-----DPNDPLYA 194 (314)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~ 194 (314)
+.+||.+|..+|++++|+..|++|+++ .|+++...
T Consensus 385 l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 385 WLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999999999986 56776543
No 212
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.79 E-value=3e-08 Score=93.29 Aligned_cols=202 Identities=10% Similarity=-0.020 Sum_probs=151.3
Q ss_pred hhcHHHHH-HHHHHHcCCCCCCCCCchhhHHH--HHHHhchhhhhh-hhccCCCC------------CC------hhhHH
Q psy4130 30 KEGIEVAV-ECLCKAYDIPDNIDPASNVDIES--LFQLYYKDEVLQ-WYSNINFS------------PT------EEVKI 87 (314)
Q Consensus 30 ~~~~~~Ai-~~~~~al~~~p~~~~~~~~~l~~--~~~~~~~~~~~~-~~~~~~~~------------~~------~~~~~ 87 (314)
.++.++|+ +.|++++...| .+..+++.. +....+..+.+. .+...... +. .....
T Consensus 356 ~~~~~~a~r~il~rAi~~~P---~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 356 KNTDSTVITKYLKLGQQCIP---NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HSCCTTHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 55667887 99999999999 665555433 333333221111 11000000 00 00113
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-DNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGRMGL 165 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~ 165 (314)
...+|...+....+.++.+.|...|.+|++. .+....+|...|.+....+ +++.|...|+++++..|+++..|...+.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence 4567888888888899999999999999987 4455677777777766665 5999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHh
Q psy4130 166 AYTQMNDYKAALEAYTKAAELDP---NDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGEL 240 (314)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~ 240 (314)
.....|+.+.|...|++++...| ....+|..+.......|+.+.+. .....+.+..|.++.+.......
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~------~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR------TLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH------HHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHhCCCCcHHHHHHHHh
Confidence 99999999999999999999988 35678888999999999999887 77778888888888876665544
No 213
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.78 E-value=1.3e-08 Score=89.84 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=88.1
Q ss_pred CCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhc-hhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcC
Q psy4130 25 LNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYY-KDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103 (314)
Q Consensus 25 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (314)
..+...|++++++++++ .|+. +....++..+...+ ..++...+. ....|..+|.++.+.|
T Consensus 102 ~~Y~Klg~l~e~e~f~~-----~pn~--~a~~~IGd~~~~~g~yeeA~~~Y~------------~a~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 102 FALAKTNRLAELEEFIN-----GPNN--AHIQQVGDRCYDEKMYDAAKLLYN------------NVSNFGRLASTLVHLG 162 (449)
T ss_dssp -------CHHHHTTTTT-----CC------------------CTTTHHHHHH------------HTTCHHHHHHHHHTTT
T ss_pred HHHHHhCCHHHHHHHHc-----CCcH--HHHHHHHHHHHHcCCHHHHHHHHH------------HhhhHHHHHHHHHHhc
Confidence 35666889988887774 2522 23445555444433 333433322 2257999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 104 KPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 104 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
+|++|++.|+++ .++.+|...+.++...|+|+.|..+... +..+|++ ...+..+|.+.|++++|+..++++
T Consensus 163 ~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~a 233 (449)
T 1b89_A 163 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAA 233 (449)
T ss_dssp CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998 4677787777777777777777665554 2233333 335666677777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHH
Q psy4130 184 AELDPNDPLYANNMQAAMSN 203 (314)
Q Consensus 184 l~~~p~~~~~~~~l~~~~~~ 203 (314)
+.+++.+..++..++.++.+
T Consensus 234 L~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 234 LGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TTSTTCCHHHHHHHHHHHHT
T ss_pred hCCcHHHHHHHHHHHHHHHh
Confidence 77777666666666666553
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=1.4e-07 Score=70.77 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCD-N-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.++.+++|.++.+.. ++++++..++..++.+ | ...+++|++|..+.++|+|++|..+++++++++|++..+...+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 467899999999988 7779999999999998 7 5689999999999999999999999999999999999887665
Q ss_pred HHH
Q psy4130 164 GLA 166 (314)
Q Consensus 164 g~~ 166 (314)
-.+
T Consensus 112 ~~i 114 (152)
T 1pc2_A 112 RLI 114 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.68 E-value=1.2e-07 Score=78.63 Aligned_cols=174 Identities=12% Similarity=0.085 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCchhhH--HH---HHHHhchhhhhhh-hccCCCCCChhhHHHHHHHHHHHHHHHh------
Q psy4130 34 EVAVECLCKAYDIPDNIDPASNVDI--ES---LFQLYYKDEVLQW-YSNINFSPTEEVKIEAEKYKNLGNTAMQ------ 101 (314)
Q Consensus 34 ~~Ai~~~~~al~~~p~~~~~~~~~l--~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~------ 101 (314)
--.+..++-.+..+| .+..+.+ +. .|...+-...... ... ........+..+..++..|.-|..
T Consensus 49 P~~Lk~~e~Ll~~~P---~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~-~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~ 124 (301)
T 3u64_A 49 PLVLKVYEALHLQNP---AHRGLSLAVGRLYIMYANAFVQTPAQYLPED-EFEAQNEAYSRARKLYLRGARYALSSLETA 124 (301)
T ss_dssp HHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHHHHHTHHHHHTSCGG-GHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHHHHHHhcCchhhcchh-hHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677788889999 5533322 33 3333332221111 000 000111234445555555544422
Q ss_pred cCCHHHHHHH-----HHHHHH-cCCCCHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHhCCC--cHHHHHH
Q psy4130 102 QDKPEQAVIE-----YSKAID-CDNSNPVYYCNRAASNNK---L--K------NYKLALRDCQIAIKIDPH--YAKAYGR 162 (314)
Q Consensus 102 ~~~~~~A~~~-----~~~al~-~~p~~~~~~~~la~~~~~---~--~------~~~~A~~~~~~al~~~p~--~~~~~~~ 162 (314)
...|.+++.. +.+++. .+|+++++++..|.+... . + ....|...++++++++|+ +..+|..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~ 204 (301)
T 3u64_A 125 YPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNV 204 (301)
T ss_dssp STTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred CccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence 2444444432 344443 578888888888777654 1 2 357899999999999999 6779999
Q ss_pred HHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-hcccccCC
Q psy4130 163 MGLAYTQM-----NDYKAALEAYTKAAELDPND-PLYANNMQAAMSN-LNNSSSAS 211 (314)
Q Consensus 163 lg~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~~~~~~A~ 211 (314)
+|.+|... |+.++|.++|+++++++|+. ...++.++..+.. .+++++|.
T Consensus 205 LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~ 260 (301)
T 3u64_A 205 LTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFD 260 (301)
T ss_dssp HHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHH
Confidence 99999995 99999999999999999975 9999999999988 48898885
No 216
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.65 E-value=1.2e-07 Score=78.51 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHh-----cCC------HHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHH
Q psy4130 86 KIEAEKYKNLGNTAMQ-----QDK------PEQAVIEYSKAIDCDNS--NPVYYCNRAASNNKL-----KNYKLALRDCQ 147 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~-----~~~------~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~ 147 (314)
+.+++.++..|.+... .++ ...|...++++++++|. +..+|..+|.+|... |+.++|.++|+
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe 228 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE 228 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence 4455566655555432 233 57899999999999999 667999999999995 99999999999
Q ss_pred HHHHhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q psy4130 148 IAIKIDPHY-AKAYGRMGLAYTQ-MNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 148 ~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~ 189 (314)
+|++++|+. ..+++..|..++. .|++++|...+++++..+|.
T Consensus 229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 999999975 9999999999988 59999999999999999887
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.64 E-value=1.8e-07 Score=83.46 Aligned_cols=111 Identities=7% Similarity=-0.034 Sum_probs=88.4
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
.+|++++|++.|++++++.-.. .....+.....+.++|.+|..+|+|++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~------------------------------lg~~h~~~~~~~~~L~~~y~~~g~~~eA 348 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSER------------------------------LPDINIYQLKVLDCAMDACINLGLLEEA 348 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCC------------------------------CCTTSHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCc------------------------------CCccchHHHHHHHHHHHHHHhhccHHHH
Confidence 4678899999999998875511 1345667788999999999999999999
Q ss_pred HHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcHH---HHHHHHHHHHH
Q psy4130 109 VIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHYAK---AYGRMGLAYTQ 169 (314)
Q Consensus 109 ~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~~ 169 (314)
+.++++++.. .|++ ...++++|.+|..+|++++|+..+++|+.+ .|+++. .+.+|+.+...
T Consensus 349 ~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 349 LFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9999999975 3444 457899999999999999999999999986 567664 44555555543
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.62 E-value=2e-07 Score=83.15 Aligned_cols=101 Identities=10% Similarity=-0.096 Sum_probs=83.0
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCChhhHHHHHHHHHHHHHHHhcCCHHHH
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 108 (314)
..|++++|+..|++++++.- . ......|..+..+.++|.+|..+|+|++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~---~---------------------------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA 359 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMS---S---------------------------VFEDSNVYMLHMMYQAMGVCLYMQDWEGA 359 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHT---T---------------------------TBCTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccCHHHHHHHHHHHHHHhh---C---------------------------ccChhchHHHHHHHHHHHHHHhhcCHHHH
Confidence 45788999999999887644 1 11445677788999999999999999999
Q ss_pred HHHHHHHHHc-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCcHHH
Q psy4130 109 VIEYSKAIDC-----DNSN---PVYYCNRAASNNKLKNYKLALRDCQIAIKI-----DPHYAKA 159 (314)
Q Consensus 109 ~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~ 159 (314)
+.+|++++.. .|++ +..+.++|.+|..+|++++|+..|++|+++ .|+++..
T Consensus 360 ~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 360 LKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999975 3444 457899999999999999999999999986 5676654
No 219
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.61 E-value=6.7e-07 Score=64.56 Aligned_cols=102 Identities=5% Similarity=-0.037 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHH
Q psy4130 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL---ALRDCQIAIKID-P-HYAKAYGRMGLAYTQMNDYKAAL 177 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~g~~~~A~ 177 (314)
.....+...|.+.+..++.+..+.+++|+++.+..+... ++..++..++.+ | ..-+.+|.||..++++|+|++|+
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345567777888888888899999999999999887766 999999999887 5 46689999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 178 EAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 178 ~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
.+++..++.+|+|..+......+..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887776665543
No 220
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=98.38 E-value=4.1e-07 Score=60.21 Aligned_cols=52 Identities=17% Similarity=0.480 Sum_probs=48.6
Q ss_pred CCCchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCch
Q psy4130 1 MSIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASN 55 (314)
Q Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~ 55 (314)
|+.++|+++++|++||..++..+.+..+.++.++.||+|++.+++++| ++..
T Consensus 15 ~~~skKrLA~sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd~---~D~~ 66 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER---EAVS 66 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCG---GGHH
T ss_pred hhhhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc---hhhh
Confidence 678899999999999999999999999999999999999999999999 6533
No 221
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=98.33 E-value=5.2e-07 Score=53.44 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCC
Q psy4130 5 PEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDN 49 (314)
Q Consensus 5 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~ 49 (314)
+|+++.+|++||+.++..+.++.+.++.++.|++|++.+++++|+
T Consensus 2 ~K~la~sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~~ 46 (52)
T 4gof_A 2 KKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVE 46 (52)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred chHHHHHHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCcc
Confidence 578999999999999999999999999999999999999999993
No 222
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=98.22 E-value=2.1e-06 Score=54.86 Aligned_cols=47 Identities=15% Similarity=0.488 Sum_probs=45.2
Q ss_pred CCchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCC
Q psy4130 2 SIKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPD 48 (314)
Q Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p 48 (314)
+.++|+++++|++||...+..+.+..+.++.++.|++|++.++.++|
T Consensus 4 ~~~~K~la~sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~~ 50 (74)
T 2lxb_A 4 SASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFER 50 (74)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred chhHHHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCCc
Confidence 46789999999999999999999999999999999999999999999
No 223
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.16 E-value=8.3e-05 Score=67.57 Aligned_cols=143 Identities=8% Similarity=-0.010 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHH---------------------------------------
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR--------------------------------------- 129 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------------------------------- 129 (314)
+..|...+..+...|+.+.|...|++++.. |.+...|...
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 566777777777778888888888888877 7765544433
Q ss_pred -HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130 130 -AASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN-DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 130 -a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 207 (314)
+....+.++.+.|...|.+| ...+.....|...+.+....+ +.+.|...|+.+++..|+++..+..++......|+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 33333466778888888888 433335566666666666555 588899999999888888888877777777778877
Q ss_pred ccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcC
Q psy4130 208 SSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~ 243 (314)
+.|. ...........+|..+..+...
T Consensus 371 ~~aR----------~l~er~~k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 371 ENAR----------ALFKRLEKTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHH----------HHHHHSCCBHHHHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 6663 4444445566777777766444
No 224
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.12 E-value=0.00019 Score=65.16 Aligned_cols=172 Identities=9% Similarity=-0.052 Sum_probs=122.5
Q ss_pred hhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhh--hhhccC-CCC----CChhhHHHHHHHHHHHHHHHh
Q psy4130 29 SKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVL--QWYSNI-NFS----PTEEVKIEAEKYKNLGNTAMQ 101 (314)
Q Consensus 29 ~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~-~~~----~~~~~~~~~~~~~~~g~~~~~ 101 (314)
..|+.+.|...|++++.. | .+..+++.. ....+.+.. ...... ... .....+.....|...+....+
T Consensus 225 ~~~~~~~ar~i~erAi~~-P---~~~~l~~~y--~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM-S---DGMFLSLYY--GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH-C---CSSHHHHHH--HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC-C---CcHHHHHHH--HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 467899999999999999 9 554444422 111110000 000000 000 001122345678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK-NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
.++.+.|...|+++ ...+.....|...|.+-...+ +.+.|...|+.+++..|+.+..|...+......|+.+.|...|
T Consensus 299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~ 377 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALF 377 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88999999999999 433335567777777766666 6999999999999999999998888888888999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 181 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+++ +.....|..........|+.+.+.
T Consensus 378 er~----~k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 378 KRL----EKTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHS----CCBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHCCCHHHHH
Confidence 998 456788888888888888887774
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.04 E-value=5.3e-05 Score=55.92 Aligned_cols=121 Identities=15% Similarity=0.037 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKP------EQAVIEYSKAIDCDNSN--------PVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
.|.+++.|........+.|+. +.-++.|++++..-|.. ...|...|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 455677888888888888988 88889999999876652 3456666644 56799999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccc
Q psy4130 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207 (314)
Q Consensus 151 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 207 (314)
+++...+..|...|..-..+|+...|.+.+.+++.+.|..... ...+..-.+.|+.
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~~~ 143 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQKK 143 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTTCS
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcCCC
Confidence 9998899999999999999999999999999999999986653 3333444444443
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.03 E-value=0.00033 Score=51.35 Aligned_cols=85 Identities=11% Similarity=-0.003 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy4130 120 NSNPVYYCNRAASNNKLKN---YKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195 (314)
Q Consensus 120 p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (314)
...+.+.+++|+++.+..+ ..+++..++..+..+|. .-+.+|.||..++++|+|.+|+.+.+..++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4578889999999998875 45799999999999885 5589999999999999999999999999999999998877
Q ss_pred HHHHHHHHh
Q psy4130 196 NMQAAMSNL 204 (314)
Q Consensus 196 ~l~~~~~~~ 204 (314)
....+..+.
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.02 E-value=4.5e-05 Score=57.54 Aligned_cols=113 Identities=13% Similarity=0.081 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP---------VYYCNRAASNNKLKNYKLALRDCQIAIKIDP---H 155 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p---~ 155 (314)
..+.++.....++..+.|+.|+-....++.+..+++ .++..+|.+++..++|..|...|++|+...- +
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888889999999999999998777643322 3778899999999999999999999876531 1
Q ss_pred ----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy4130 156 ----------------------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201 (314)
Q Consensus 156 ----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 201 (314)
+.+..+.++.|+.+++++++|+..++..- ..-..+.+...||.+|
T Consensus 99 ~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 99 TSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred CCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 12566777778888888887777765321 1123455555555543
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.01 E-value=0.00011 Score=53.08 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy4130 121 SNPVYYCNRAASNNKLKN---YKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196 (314)
Q Consensus 121 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (314)
-.+.+.+++|+++.+..+ ..+++..++..++.+|. .-+.++.||..++++|+|++|+.+.+.++++.|+|..+...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 457788889999888765 45788999999988884 46889999999999999999999999999999999888776
Q ss_pred HHHHHHHh
Q psy4130 197 MQAAMSNL 204 (314)
Q Consensus 197 l~~~~~~~ 204 (314)
...+..+.
T Consensus 118 k~~Ie~ki 125 (134)
T 3o48_A 118 KSMVEDKI 125 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.93 E-value=5.5e-05 Score=54.56 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQ---AVIEYSKAIDCD-N-SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
..+.+.+|.++.+..+... ++..++..++.+ | ..-++++.+|..+.++|+|.+|..+++..++..|++..+....
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4578889999998887766 999999988876 4 4667999999999999999999999999999999999887665
Q ss_pred HHH
Q psy4130 164 GLA 166 (314)
Q Consensus 164 g~~ 166 (314)
..+
T Consensus 115 ~~i 117 (126)
T 1nzn_A 115 RLI 117 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 230
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.74 E-value=0.00019 Score=54.07 Aligned_cols=108 Identities=10% Similarity=0.108 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC---
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYA---------KAYGRMGLAYTQMNDYKAALEAYTKAAELD---PN--- 189 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~--- 189 (314)
++..-...+...+.|+.|+.....++.+..++. .++..+|.+++..++|..|...|++++... +.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 455556677888999999999999777643322 478999999999999999999999987542 11
Q ss_pred -------------------CHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccC---ChHHHHHHHHhhc
Q psy4130 190 -------------------DPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS---DPSIQQVFGELFA 242 (314)
Q Consensus 190 -------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~p~~~~~l~~~~~ 242 (314)
+.++.+.++.|+.+++++++|+ ...+.+|. .|.+-.++++++.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai----------~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI----------AILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHH----------HHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH----------HHHhcCCchhcCHHHHHHHHHHhc
Confidence 1268899999999999999996 55666554 7888888887753
No 231
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.73 E-value=0.00029 Score=50.97 Aligned_cols=79 Identities=10% Similarity=0.013 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 164 (314)
+..-++.|.++.+..+ ...++..++..++.+|. ..++++.+|..+.++|+|++|..+++.+++..|++..+.....
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~ 119 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS 119 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4678888888888764 46799999999998884 5789999999999999999999999999999999998876655
Q ss_pred HHH
Q psy4130 165 LAY 167 (314)
Q Consensus 165 ~~~ 167 (314)
.+-
T Consensus 120 ~Ie 122 (134)
T 3o48_A 120 MVE 122 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.65 E-value=0.00039 Score=51.34 Aligned_cols=120 Identities=11% Similarity=0.002 Sum_probs=93.2
Q ss_pred HcCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy4130 117 DCDNSNPVYYCNRAASNNKLKNY------KLALRDCQIAIKIDPH--------YAKAYGRMGLAYTQMNDYKAALEAYTK 182 (314)
Q Consensus 117 ~~~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (314)
-..|.+++.|........+.|+. ++-+..|++|+..-|- .+..|.+.+.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 46799999999999999988999 8999999999998765 34567777755 567999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChH-HHHHHHHhhcC
Q psy4130 183 AAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPS-IQQVFGELFAN 243 (314)
Q Consensus 183 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~-~~~~l~~~~~~ 243 (314)
++.++.....+|...+....++|+...|. ..+..+.-..+.+-+ +...+.++-..
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kAR------kILg~AiG~~~k~~~~le~a~~nl~~~ 141 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSK------QLLQKAVERGAVPLEMLEIALRNLNLQ 141 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTCBCHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHH------HHHHHHhccCCCcHHHHHHHHHhhhcC
Confidence 99998888999999999999999999996 555555544444333 35556666443
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.65 E-value=0.00079 Score=49.34 Aligned_cols=79 Identities=10% Similarity=0.024 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDK---PEQAVIEYSKAIDCDNS-NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRM 163 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 163 (314)
.....+++|+++.+..+ ..+++..++..++.+|. ..++++.+|..+.++|+|.+|..+++..++..|++..+....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 35678888999988775 46799999999998884 567899999999999999999999999999999998877655
Q ss_pred HHH
Q psy4130 164 GLA 166 (314)
Q Consensus 164 g~~ 166 (314)
..+
T Consensus 118 ~~I 120 (144)
T 1y8m_A 118 SMV 120 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0011 Score=62.61 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
.+..-+..+...|+|+-|+.+.++|+...|.....|+.|+.+|..+|+|+.|+-.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445666667777777777777777777777777777777777777777777666544
No 235
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.46 E-value=0.024 Score=51.46 Aligned_cols=114 Identities=8% Similarity=0.003 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLA 166 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 166 (314)
...|..+-..+.+.|++++|...|++..+.. ..+...|..+-..|.+.|++++|...+++..+..-. +...|..+-.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 4456667777777777777777777766542 224556666777777777777777777777765422 45666677777
Q ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Q psy4130 167 YTQMNDYKAALEAYTKAAEL--DPNDPLYANNMQAAMSN 203 (314)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 203 (314)
+.+.|+.++|.+.+++.-+. .|+ ...+..+-..+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~s 222 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHHHHS
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHHhc
Confidence 77777777777777776553 343 3334444444333
No 236
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.13 E-value=0.06 Score=48.78 Aligned_cols=146 Identities=8% Similarity=-0.043 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCC-CcHHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCD-NSNPVYYCNRAASNNKL---------KNYKLALRDCQIAIKIDP-HYAKAY 160 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p-~~~~~~ 160 (314)
+...-..+.+.|++++|+..|++..+.. +.+...|..+-.++... +..++|...|++.....- -+...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4444567778889999999888877653 22445555555455433 336788888888776542 256778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh-ccCChHHHHHHH
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELD-PNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK-VLSDPSIQQVFG 238 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~p~~~~~l~ 238 (314)
..+-..+.+.|++++|...|++..+.. .-+...|..+-..+.+.|+.++|. ..+.++... +..|...+..+-
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~------~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAY------EVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHH------HHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHH------HHHHHHHhcCCCCCHHHHHHHH
Confidence 888888888888888888888877642 125667777888888888888886 555554443 222444444444
Q ss_pred HhhcC
Q psy4130 239 ELFAN 243 (314)
Q Consensus 239 ~~~~~ 243 (314)
..+.+
T Consensus 183 ~~~~~ 187 (501)
T 4g26_A 183 KVSMD 187 (501)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44443
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.09 E-value=0.017 Score=50.63 Aligned_cols=141 Identities=12% Similarity=-0.036 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCcHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL-RDCQIAIKIDPHYAKAYGR 162 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~ 162 (314)
.+-.....+...|......++.+.|...+++++.+....+-. ... ...|-.+. ..+++. ...+...
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~------~~~a~~~ 176 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVED------KVLAHTA 176 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHH------HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHH------HHHHHHH
Confidence 344444555566666677899999999999999985332100 000 01111111 111111 1123445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc------cCChHHHHH
Q psy4130 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV------LSDPSIQQV 236 (314)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~p~~~~~ 236 (314)
++.++...|++.+|+..+.+++..+|-+..++..+..++...|+..+|. ..|..+.+.+ ...|++..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al------~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL------GAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH------HHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 5666667777777777777777777777777777777777777777776 6665554433 224566666
Q ss_pred HHHhhcC
Q psy4130 237 FGELFAN 243 (314)
Q Consensus 237 l~~~~~~ 243 (314)
+..++..
T Consensus 251 ~~~il~~ 257 (388)
T 2ff4_A 251 NERILRQ 257 (388)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 6666543
No 238
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.80 E-value=0.01 Score=53.47 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 204 (314)
.+..+|.+......+..|..+|.+|+.+.|++...|..||.+....|+.-+|+.+|-+++......+.+..++..++.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 45567777777777788888888888888888888888888888888888888888888877666777888887777654
No 239
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.56 E-value=0.018 Score=51.96 Aligned_cols=80 Identities=18% Similarity=0.090 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ 169 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 169 (314)
..+..+|+.......+..|..+|.+|+.+.|.+...|+.+|.+....|+.-+|+-+|.+++......+.+..++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999998877778887777776654
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.47 E-value=0.063 Score=40.49 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK--I--------------- 152 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~--------------- 152 (314)
+.-..++..++-.|+|..++-++.. + +.....+..+.||.+.++|..|+.+++..+. .
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~---l--NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK---L--NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT---C--CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh---c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 4456677788889999988776532 2 3456667788999999999999999999993 2
Q ss_pred CCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 153 DPHYAK-AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 153 ~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
+|.+-+ .+..+|.++...|+.++|+.+|.......|-.+.+
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 233333 45678999999999999999999999999876654
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.016 Score=54.91 Aligned_cols=109 Identities=11% Similarity=0.007 Sum_probs=81.9
Q ss_pred cCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--Hc-cCHHHHHHHHHHHHHh--------CCCc----------HHH
Q psy4130 102 QDK-PEQAVIEYSKAIDCDNSNPVYYCNRAASNN--KL-KNYKLALRDCQIAIKI--------DPHY----------AKA 159 (314)
Q Consensus 102 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-~~~~~A~~~~~~al~~--------~p~~----------~~~ 159 (314)
.+. ++.|+..+++....+|.... ++..+.+.. .. .+--+|++.+.++++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 445 58899999999999987654 333333322 12 3455688888777742 2232 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 160 YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+..-+..+...|+++-|+.+-++|+...|.....|+.|+.||..+|+++.|.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL 391 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL 391 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence 4455777888999999999999999999999999999999999999999996
No 242
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.36 E-value=0.093 Score=42.87 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=57.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA 159 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 159 (314)
.+++.|++++|+......++.+|.++.....+...+.-.|+|+.|.+-++.+.+++|.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 46788999999999999999999999999999999999999999999999999999987643
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.80 E-value=0.11 Score=45.33 Aligned_cols=48 Identities=6% Similarity=-0.047 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhccCChHHHHHHHHhhcCCCC
Q psy4130 193 YANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQ 246 (314)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ 246 (314)
+...++..+...|++.+++ ..+...+...|-+..++..+-.++...+.
T Consensus 173 a~~~~~~~~l~~g~~~~a~------~~l~~~~~~~P~~E~~~~~lm~al~~~Gr 220 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVI------AELEALTFEHPYREPLWTQLITAYYLSDR 220 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHH------HHHHHHHHHSTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCHHHHH------HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4455666667777777776 66666666666666665555555444443
No 244
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.60 E-value=0.2 Score=43.68 Aligned_cols=116 Identities=13% Similarity=-0.064 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcH----H
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNS------NPVYYCNRAASNNKLKNYKLALRDCQIAIKID---PHYA----K 158 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~----~ 158 (314)
-..+|..|+..|+|.+|...+.+.++.... -.+++.....+|...+++.++...+.+|.... +.++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 347899999999999999999988874222 13567778889999999999999999987653 1233 4
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--C---HHHHHHHHHHHHHhccc
Q psy4130 159 AYGRMGLAYT-QMNDYKAALEAYTKAAELDPN--D---PLYANNMQAAMSNLNNS 207 (314)
Q Consensus 159 ~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~--~---~~~~~~l~~~~~~~~~~ 207 (314)
....-|..+. ..++|..|...|-++++-... + ..+...++.|....++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence 4555688888 899999999999999864322 1 23445566666665553
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.28 E-value=0.099 Score=42.70 Aligned_cols=62 Identities=19% Similarity=0.028 Sum_probs=57.2
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 132 SNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 132 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
-+.+.|+.++|+..+...|+.+|.++.....+-.+++-.|+|++|.+-++.+.+++|.....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 35678999999999999999999999999999999999999999999999999999987543
No 246
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.99 E-value=0.23 Score=47.38 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=62.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHc
Q psy4130 99 AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI--------KIDPHYAKAYGRMGLAYTQM 170 (314)
Q Consensus 99 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~ 170 (314)
....|+++.|.+..+ ..++...|..+|..+.+.++++.|+.+|.++- .....+.+.+..++......
T Consensus 662 ~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 662 ALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 456677877776643 23567788888888888888888888888752 11234455555666666666
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 171 NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
|++..|...|.+. ++ ......++...+++++|.
T Consensus 737 ~~~~~A~~~~~~~-----g~---~~~a~~~~~~~~~~~~A~ 769 (814)
T 3mkq_A 737 GKFNLAFNAYWIA-----GD---IQGAKDLLIKSQRFSEAA 769 (814)
T ss_dssp TCHHHHHHHHHHH-----TC---HHHHHHHHHHTTCHHHHH
T ss_pred CchHHHHHHHHHc-----CC---HHHHHHHHHHcCChHHHH
Confidence 6666666555432 11 112234456666666663
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.21 Score=44.24 Aligned_cols=99 Identities=11% Similarity=0.001 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcH----HHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS---NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP--HYA----KAYG 161 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~----~~~~ 161 (314)
++..+|..++..|+++.|.+.|.++...... -.+.+.....++...++|..+...+.++-.+-. .++ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5678999999999999999999998876432 356788888899999999999999999876522 222 3445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
..|.++...++|..|...|..++.....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 5677788899999999999998876543
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=2.1 Score=37.94 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCC
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN--S----NPVYYCNRAASNNKLKNYKLALRDCQIAIK---IDPH 155 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~ 155 (314)
....+.....++..+...|++.+|...+.....-.- . -.+++.....+|...++|.+|...+.++.. ..+.
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 345677788999999999999999999988764211 1 145778888999999999999999998742 2333
Q ss_pred cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 156 YA----KAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 156 ~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
.+ ..+...|..+...++|.+|..+|..++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 33 56677889999999999999999998875
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.72 E-value=0.42 Score=47.89 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=84.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------
Q psy4130 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI---------------------- 152 (314)
Q Consensus 95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------------------- 152 (314)
+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-.-
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 3444556666665543 34566778878899999999999999999999886321
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCH----HHHHHHHHHHHHhcccccCC
Q psy4130 153 -DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP-NDP----LYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 153 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~----~~~~~l~~~~~~~~~~~~A~ 211 (314)
....+..|..+..++...+.++.+++.-+.|++..+ ++. ..|.++-..+..++++++|-
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 111235677788888899999999999999998765 333 26777888889999999996
No 250
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.11 E-value=1.1 Score=43.89 Aligned_cols=99 Identities=5% Similarity=-0.101 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID-PHYAKAYGRM 163 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 163 (314)
...+..+-..+.+.|+.++|...|.+.-+. ..-+...|..+-..|.+.|++++|...|++..... .-+...|..+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 446888889999999999999999764432 23467789999999999999999999999998864 2356777777
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhC
Q psy4130 164 GLAYTQMND-YKAALEAYTKAAELD 187 (314)
Q Consensus 164 g~~~~~~g~-~~~A~~~~~~al~~~ 187 (314)
-.++.+.|+ .++|...|++.....
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 778888887 578899999988753
No 251
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.67 E-value=2.5 Score=31.94 Aligned_cols=69 Identities=3% Similarity=-0.075 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--c---------------CCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID--C---------------DNSNPV-YYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
....+....|+.+.++|..|+.+++..+. . +|.+.+ .+..+|.++.+.|+.++|+.++....
T Consensus 62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 44567778899999999999999999993 2 233444 45668999999999999999999988
Q ss_pred HhCCCcH
Q psy4130 151 KIDPHYA 157 (314)
Q Consensus 151 ~~~p~~~ 157 (314)
..+|-.+
T Consensus 142 ~~~~lf~ 148 (242)
T 3kae_A 142 GKSFLFS 148 (242)
T ss_dssp HHCCCHH
T ss_pred CCccccc
Confidence 8876433
No 252
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.61 E-value=0.41 Score=43.03 Aligned_cols=123 Identities=12% Similarity=-0.004 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHH----------HHHHHHHHc-----CC-CCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAV----------IEYSKAIDC-----DN-SNPVYYCNRAASNNKLKNYKLALRDCQI 148 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~----------~~~~~al~~-----~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 148 (314)
+.-.+..|+..+.++...|+..... ..+-.+++. |+ ..+.++..+-..|...+.|+.|.....+
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 4455677887777777777665432 122222221 22 2345677788889999999999999999
Q ss_pred HHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhccccc
Q psy4130 149 AIKIDPHY-------AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP-------LYANNMQAAMSNLNNSSS 209 (314)
Q Consensus 149 al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~ 209 (314)
+. .|.. ...++.+|.++...++|.+|.+++..|+...|.+. .++..+..|..-+|+.++
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 85 3432 46788899999999999999999999999887542 345555666666788764
No 253
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.51 E-value=2.2 Score=32.52 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=36.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 98 TAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 98 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
.....|+++.|.+..+.. ++...|..+|......|+++-|+.+|.++-
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 345678888888776654 567788888888888888888888887754
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.18 E-value=1.8 Score=37.73 Aligned_cols=94 Identities=13% Similarity=-0.046 Sum_probs=70.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH----HHH
Q psy4130 128 NRAASNNKLKNYKLALRDCQIAIKIDPH------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELD---PNDP----LYA 194 (314)
Q Consensus 128 ~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~----~~~ 194 (314)
.+|..|+..|+|.+|...+.+..+-... -.+.+..-..+|..++++.++...|.++.... +.+| ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7899999999999999999988874322 23667778889999999999999999987653 1223 345
Q ss_pred HHHHHHHH-HhcccccCCCCCCCcchHHHHHHhc
Q psy4130 195 NNMQAAMS-NLNNSSSASGSGGVFPGLSEMSTKV 227 (314)
Q Consensus 195 ~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~ 227 (314)
..-|..+. ..++|..|. ..|.+.....
T Consensus 184 ~~~Gi~~l~~~rdyk~A~------~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAF------SYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHH------HHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHH------HHHHHHHhcc
Confidence 55677777 788998887 6666665444
No 255
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.75 E-value=1.7 Score=41.32 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKA 115 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~a 115 (314)
...|..+|..+.+.++++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 468999999999999999999999986
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.49 E-value=1 Score=45.14 Aligned_cols=119 Identities=11% Similarity=-0.022 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------CCCCHHHHHHHHHHHHHccCHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----------------------DNSNPVYYCNRAASNNKLKNYKLALRD 145 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------------------~p~~~~~~~~la~~~~~~~~~~~A~~~ 145 (314)
+...+.+|.++...|++++|..+|+++-.- ....+.+|.....++.+.+.++.+++.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344588999999999999999999887321 011235677778888899999999999
Q ss_pred HHHHHHhCCC-cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130 146 CQIAIKIDPH-YA----KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208 (314)
Q Consensus 146 ~~~al~~~p~-~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 208 (314)
.+.|++..+. +. ..|.++=..+..+|+|++|...+...-. ..........|-..++..+..+
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCChh
Confidence 9999987643 32 2677888889999999999888765432 2234566666666666665543
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.21 E-value=2.9 Score=41.04 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKI----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL--DPNDPLYANNM 197 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 197 (314)
..|..+-..|.+.|+.++|...|.+..+. ..-+...|..+-..+.+.|++++|.+.|++..+. .| |...|..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence 45778888999999999999999775432 2346788999999999999999999999998874 45 56677778
Q ss_pred HHHHHHhccc-ccCC
Q psy4130 198 QAAMSNLNNS-SSAS 211 (314)
Q Consensus 198 ~~~~~~~~~~-~~A~ 211 (314)
-.++.+.|+. ++|.
T Consensus 207 I~glcK~G~~~e~A~ 221 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIE 221 (1134)
T ss_dssp HHHHHHHTCCHHHHH
T ss_pred HHHHHhCCCcHHHHH
Confidence 7888888885 4554
No 258
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.07 E-value=1.8 Score=32.89 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy4130 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183 (314)
Q Consensus 121 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (314)
.++...+.++ ...|+++.|.+..+.. ++...|..||......|+++-|..+|.++
T Consensus 6 ~D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3455555554 4789999999998765 67889999999999999999999999875
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.99 E-value=11 Score=31.78 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 155 HYAKAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 155 ~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
.++..+..+|..+++.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 57889999999999999999998887
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.96 E-value=2.5 Score=39.24 Aligned_cols=50 Identities=4% Similarity=-0.308 Sum_probs=25.4
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
+.|++..|..++.+.-..........|.+|.++..+|+.++|...|+++.
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44555555555544333222334555555555555555555555555554
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.65 E-value=2.9 Score=38.81 Aligned_cols=49 Identities=4% Similarity=-0.230 Sum_probs=21.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy4130 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150 (314)
Q Consensus 102 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 150 (314)
.++++.|..+|++.-..........+-+|.++...|+.++|...|+++.
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444443222112233334444444444444444444444444
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.36 E-value=0.73 Score=40.72 Aligned_cols=99 Identities=10% Similarity=-0.052 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHH----
Q psy4130 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH---YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP--NDPL---- 192 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~---- 192 (314)
-..++..+|..|...|++++|.++|.++...... -...+..+..++...++|..+...+.++..+-. .++.
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 3457889999999999999999999998876433 357888888999999999999999999876522 2332
Q ss_pred HHHHHHHHHHHhcccccCCCCCCCcchHHHHHHh
Q psy4130 193 YANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTK 226 (314)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (314)
.....|.++...+++.+|. ..|.+....
T Consensus 210 lk~~~gl~~l~~r~f~~Aa------~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAA------KLLVDSLAT 237 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHH------HHHHHHhcc
Confidence 2334445555666776665 555554443
No 263
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.81 E-value=12 Score=36.79 Aligned_cols=94 Identities=18% Similarity=0.072 Sum_probs=71.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C--------------------
Q psy4130 95 LGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI-D-------------------- 153 (314)
Q Consensus 95 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-------------------- 153 (314)
+...+...+.++-| .+.+...|.++..-+.+|.+|...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 45566667777654 3355677888888899999999999999999999986521 0
Q ss_pred CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHH
Q psy4130 154 PH--YAKAYGRMGLAYTQMNDYKAALEAYTKAAEL-DPNDPL 192 (314)
Q Consensus 154 p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 192 (314)
+. ....|.....++...+-++-++...+.|+.. .++++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 11 1246778888999999999999999999974 455554
No 264
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=85.86 E-value=5.6 Score=29.80 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=58.7
Q ss_pred CchhHHHHHHHHHHHHhccccCCCcchhhcHHHHHHHHHHHcCCCCCCCCCchhhHHHHHHHhchhhhhhhhccCCCCCC
Q psy4130 3 IKPEDIITSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPT 82 (314)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
+|.-+.-..+|.|+..++..++. ...+...++-..+.+.-++.+..+
T Consensus 16 dDPL~~w~~yIkW~e~~~p~~~~----~s~L~~lLErc~~~f~~~~~YknD----------------------------- 62 (164)
T 2wvi_A 16 NDPLDVWDRYISWTEQNYPQGGK----ESNMSTLLERAVEALQGEKRYYSD----------------------------- 62 (164)
T ss_dssp SCTHHHHHHHHHHHHHHCCC--------CCHHHHHHHHHHHTTTCGGGTTC-----------------------------
T ss_pred CCChHHHHHHHHHHHHHCcCCCc----cchHHHHHHHHHHHhhhhhhhccC-----------------------------
Confidence 34556667888888888765541 233433333333344444544333
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
+.....|...+... ++ +.+.|...... .-..+..|...|..+...|++.+|...|+..++...
T Consensus 63 ---~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 63 ---PRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp ---HHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33344455544432 22 44445544432 344566666667777777777777777777776653
No 265
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.74 E-value=2.3 Score=38.32 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN-------PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY 156 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 156 (314)
...+..+..+-..|...+.|++|.....++. .|.. ..+++.+|.++.-.++|.+|..++..|++..|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3556778888899999999999999999874 5543 4567889999999999999999999999988754
No 266
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=83.05 E-value=12 Score=27.66 Aligned_cols=46 Identities=11% Similarity=-0.052 Sum_probs=26.3
Q ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130 108 AVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153 (314)
Q Consensus 108 A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 153 (314)
+.+.|...... .-..+..|...|..+...|++.+|...|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555444432 23445556666666666666666666666666654
No 267
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=82.53 E-value=8.6 Score=30.35 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
++.....|...+.. .+.+...|...... .-..+..|...|..+...|++.+|...|+..++....
T Consensus 116 D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 116 DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44445566655542 13455566655543 3456777777888888888888888888888887643
No 268
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.18 E-value=15 Score=32.42 Aligned_cols=104 Identities=12% Similarity=-0.102 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCH--
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKID----PH--YAKAYGRMGLAYTQMNDYKAALEAYTKAAE---LDPNDP-- 191 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~-- 191 (314)
+.+...|+.+|...|++.+|...+.....-. +. -.+.+.....++...+++..|...++++.. -.+..+
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 3456789999999999999999998876421 11 246778888999999999999999998642 233333
Q ss_pred --HHHHHHHHHHHHhcccccCCCCCCCcchHHHHHHhc--cCChH
Q psy4130 192 --LYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKV--LSDPS 232 (314)
Q Consensus 192 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~p~ 232 (314)
..+...+.++...++|.+|. ..|.++.... ..||.
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~------~~y~e~~~~~~~~~d~~ 255 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVA------QYLQEIYQTDAIKSDEA 255 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHH------HHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHH------HHHHHHHhcccccCCHH
Confidence 35667777888888888886 6666665543 33554
No 269
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=80.65 E-value=6.1 Score=35.06 Aligned_cols=108 Identities=10% Similarity=-0.073 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHHcCCC--------C-----H---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C--------c
Q psy4130 103 DKPEQAVIEYSKAIDCDNS--------N-----P---VYYCNRAASNNKLKNYKLALRDCQIAIKIDP--H--------Y 156 (314)
Q Consensus 103 ~~~~~A~~~~~~al~~~p~--------~-----~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~--------~ 156 (314)
...+++...+.++....-. + . ....++-.+|++.++..-+...++..-...+ . -
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 3456677777777765211 1 0 1234566789999999888888865544432 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----------HHHHHHHHHHHHHhcccccC
Q psy4130 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAEL-DPND----------PLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 157 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~----------~~~~~~l~~~~~~~~~~~~A 210 (314)
+...|.+|..+...++|.+|.+.+..|+.. .|.. ..++..+--+..-+|+...-
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~ 284 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKW 284 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCH
Confidence 467889999999999999999999999998 7754 12344455566667776543
No 270
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=79.08 E-value=7.3 Score=30.32 Aligned_cols=39 Identities=18% Similarity=0.017 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHH
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV 124 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 124 (314)
.......+.+|..++.+++|.+|.+++.+|++..|....
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 345678999999999999999999999999999887653
No 271
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=77.46 E-value=5.3 Score=26.48 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
+.+..+-..+..+...|.|++||++.+++..
T Consensus 13 n~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 13 NLAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4577788899999999999999998887764
No 272
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=76.71 E-value=7.9 Score=24.53 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY 125 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 125 (314)
...+|..+...|++++|+.+|-+|+..+|.-...
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3467888888888888888888888888775543
No 273
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=74.74 E-value=18 Score=26.27 Aligned_cols=52 Identities=12% Similarity=-0.045 Sum_probs=28.5
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
.+|+-++-.+.+...+.-++-++..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455555555554444444555666666666666666666666666665543
No 274
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.72 E-value=13 Score=23.45 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (314)
.+|..+...|++++|...|-+|+...|.-...
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 45666666666666666666666666654443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=74.60 E-value=28 Score=26.98 Aligned_cols=69 Identities=4% Similarity=-0.104 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC--DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 154 (314)
++.....|...+..+ ..+...++...|...... .-..+..|...|..+...|++.+|...|+..++...
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 344455666666554 233355667777665553 345667777777778888888888888888887653
No 276
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=74.39 E-value=24 Score=30.04 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC
Q psy4130 122 NPVYYCNRAASNNKLKN--YKLALRDCQIAIKI-----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL------DP 188 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 188 (314)
.|.++.+||.+-....- ...++..|.+||.. +..+...|..+|-.+++.+++.+|+..+-.+-.. ..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~r 333 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSK 333 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCG
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 45555555555433221 12266777777765 2456788888999999999999999988876653 23
Q ss_pred CCHHHHHHHHHHH
Q psy4130 189 NDPLYANNMQAAM 201 (314)
Q Consensus 189 ~~~~~~~~l~~~~ 201 (314)
++.++|..+-.+-
T Consensus 334 eDeEIYKEf~eIA 346 (472)
T 3re2_A 334 DDEEMYKEFHEIA 346 (472)
T ss_dssp GGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 4566666665543
No 277
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=72.44 E-value=9.8 Score=29.57 Aligned_cols=52 Identities=8% Similarity=-0.103 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHHcCCHH
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA-----YGRMGLAYTQMNDYK 174 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~~g~~~ 174 (314)
....+.+|.++...++|.+|..++..|+...|..... +..+--+-.-+|++.
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3567889999999999999999999999998876432 223333334456643
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=70.16 E-value=27 Score=25.39 Aligned_cols=62 Identities=11% Similarity=-0.045 Sum_probs=47.3
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy4130 92 YKNLG-NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153 (314)
Q Consensus 92 ~~~~g-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 153 (314)
|..+| ..+..+|.-++--+.+...+.-.+-+++.+..+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444 344567777777777777666677789999999999999999999999999998764
No 279
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=69.17 E-value=34 Score=29.73 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=41.5
Q ss_pred HHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q psy4130 142 ALRDCQIAIKI-----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL------DPNDPLYANNMQAA 200 (314)
Q Consensus 142 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 200 (314)
++..|.+|+.. ...+...|..+|-.+++.+++.+|+..+-.+-.. ..++.++|..+-.+
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 56666666654 2456778888999999999999999988876653 23456666555444
No 280
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=69.10 E-value=7.9 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.276 Sum_probs=7.1
Q ss_pred HHccCHHHHHHHHHHHH
Q psy4130 134 NKLKNYKLALRDCQIAI 150 (314)
Q Consensus 134 ~~~~~~~~A~~~~~~al 150 (314)
-+.|+|++|+.+|..++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34444444444443333
No 281
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=67.86 E-value=11 Score=24.97 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
-.+.+++..+...|+|++||++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344556666666777777766655544
No 282
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.35 E-value=8.9 Score=24.96 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=6.3
Q ss_pred HcCCHHHHHHHHHHH
Q psy4130 169 QMNDYKAALEAYTKA 183 (314)
Q Consensus 169 ~~g~~~~A~~~~~~a 183 (314)
..|++++|+.+|..+
T Consensus 23 ~~g~y~eAl~lY~~a 37 (83)
T 2v6y_A 23 KEGKVEDAITYYKKA 37 (83)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 344444444444433
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.26 E-value=41 Score=25.99 Aligned_cols=65 Identities=8% Similarity=-0.047 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
.+|...+..+ ..+...++...|.-..... -..+..|...|..+...|++.+|.+.|+.+++....
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3444444433 1233667888887777654 567888889999999999999999999999997754
No 284
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=66.23 E-value=5.2 Score=25.27 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=15.0
Q ss_pred HHHHHHHHhhChHHHHHHHHH
Q psy4130 266 QQIAAQLEQRNPELVEQIFQQ 286 (314)
Q Consensus 266 ~~~~~~~~~~~p~~~~~l~~~ 286 (314)
+.+.+++.+.+|++++.+.+-
T Consensus 30 ~~lLqqL~~~NPqL~q~I~~n 50 (72)
T 1pve_A 30 PALLQQIGRENPQLLQQISQH 50 (72)
T ss_dssp HHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHhHCHHHHHHHHHC
Confidence 356667888899888866653
No 285
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=65.73 E-value=65 Score=28.05 Aligned_cols=81 Identities=14% Similarity=0.035 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CC
Q psy4130 122 NPVYYCNRAASNNKLKN--YKLALRDCQIAIKI-----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL------DP 188 (314)
Q Consensus 122 ~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p 188 (314)
.|.++.+||.+-.-... ...++..|.+||.. ...+...|..+|-.+++.+++.+|+..+..+-.. ..
T Consensus 261 YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~r 340 (489)
T 4gq4_A 261 YPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR 340 (489)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCT
T ss_pred cchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhccccc
Confidence 45556666665443221 12356777777764 3446788889999999999999999999887653 34
Q ss_pred CCHHHHHHHHHHHH
Q psy4130 189 NDPLYANNMQAAMS 202 (314)
Q Consensus 189 ~~~~~~~~l~~~~~ 202 (314)
++.++|..+-.+..
T Consensus 341 eDeEiYke~~eIan 354 (489)
T 4gq4_A 341 EDEEIYKEFFEVAN 354 (489)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 56677766655533
No 286
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.60 E-value=13 Score=24.12 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q psy4130 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118 (314)
Q Consensus 87 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 118 (314)
..+..+...|...-+.|+|++|+.+|.++++.
T Consensus 17 ~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 17 EMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 44556777777778888888888888877763
No 287
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.18 E-value=1.1e+02 Score=29.87 Aligned_cols=137 Identities=12% Similarity=-0.000 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C---CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy4130 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDN---S---NP----VYYCNRAASNNKLKNYKLALRDCQIAIKIDPH 155 (314)
Q Consensus 86 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~---~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 155 (314)
....-+++.+|.++...+ .+++..+...+..+. . .. .+-..+|.++...++ +++...+...+.-+..
T Consensus 410 ~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~ 486 (963)
T 4ady_A 410 FIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSA 486 (963)
T ss_dssp HHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCH
Confidence 345667777777776655 468888887776432 0 11 345577777766665 4677778887765432
Q ss_pred cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH--HHHHHHhcccccCCCCCCCcchHHHHHHhccCCh
Q psy4130 156 YA--KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM--QAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDP 231 (314)
Q Consensus 156 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~p 231 (314)
.. .+-+.+|.++...|+-+-....+..+.+.. +..+...+ +..+...|+.+.+ +.+.+..... .||
T Consensus 487 ~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~e~~-------~~li~~L~~~-~dp 556 (963)
T 4ady_A 487 TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQELA-------DDLITKMLAS-DES 556 (963)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCGGGG-------HHHHHHHHHC-SCH
T ss_pred HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCChHHH-------HHHHHHHHhC-CCH
Confidence 22 355567888888888766666665555433 33444333 3334466777766 5555544432 466
Q ss_pred HHHH
Q psy4130 232 SIQQ 235 (314)
Q Consensus 232 ~~~~ 235 (314)
.++.
T Consensus 557 ~vRy 560 (963)
T 4ady_A 557 LLRY 560 (963)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 288
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=64.14 E-value=42 Score=24.92 Aligned_cols=61 Identities=3% Similarity=-0.081 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---HHHHH------HHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN---PVYYC------NRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~------~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
.-+..|..++..|+|-+|-+.++.+-...+.. ..+|. .-|..+.+.|+...|...+.+++.
T Consensus 34 ~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 34 RAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566777888899999988888887765443 12222 222334456777777777777765
No 289
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=64.00 E-value=34 Score=30.27 Aligned_cols=65 Identities=9% Similarity=-0.079 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDN--S--------NPVYYCNRAASNNKLKNYKLALRDCQIAIKI-DPHY 156 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~ 156 (314)
...+-.+|++.++..-+...++..-...+ . ....+|.+|..+...++|.+|..++..|+.. .|..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34455788999999998888865433222 1 2357889999999999999999999999999 7765
No 290
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=62.96 E-value=66 Score=26.79 Aligned_cols=93 Identities=4% Similarity=-0.164 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHHh-------CCC
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYK-LALRDCQIAIKI-------DPH 155 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~-------~p~ 155 (314)
.+.++.-+..+.+.|++.-|.+...-.++. .|-+......+..++.....-+ .=.+..+++++- .-.
T Consensus 53 idlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G 132 (312)
T 2wpv_A 53 IELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG 132 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC
Confidence 345566666666667666665543322221 2223334444444443322111 112333333322 224
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
++..+..+|..+...+++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 78999999999999999999998874
No 291
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=62.89 E-value=19 Score=33.60 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccC
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 210 (314)
......|...+..|+|..|.+..+.++..+|+|..+...++.++.++|...+.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 34555666667777788888777777777888777777777777777766655
No 292
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=62.29 E-value=17 Score=23.63 Aligned_cols=27 Identities=41% Similarity=0.509 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
.+...|...-+.|+|++|+.+|.++++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.65 E-value=17 Score=35.53 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC----------------------CHHHHHHHHHHHHHccCHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-DNS----------------------NPVYYCNRAASNNKLKNYKLALRD 145 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~----------------------~~~~~~~la~~~~~~~~~~~A~~~ 145 (314)
+..-+.+|.++...|++++|..+|+++-.- ... ...+|.....++.+.+-++-+++.
T Consensus 840 ~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f 919 (950)
T 4gq2_M 840 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 919 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 344588999999999999999999876521 110 123677888889999999999999
Q ss_pred HHHHHHhC-CCcH
Q psy4130 146 CQIAIKID-PHYA 157 (314)
Q Consensus 146 ~~~al~~~-p~~~ 157 (314)
.+.||+.- +++.
T Consensus 920 A~lAI~~~~~dd~ 932 (950)
T 4gq2_M 920 SLLADASKETDDE 932 (950)
T ss_dssp HHHHHHTCCSCCH
T ss_pred HHHHHhhcccCCc
Confidence 99999754 4444
No 294
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=60.65 E-value=20 Score=23.45 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
.+..+...|...-..|+|++|+.+|..+++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666666677777777777777765
No 295
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=57.77 E-value=13 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH
Q psy4130 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP 123 (314)
Q Consensus 92 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 123 (314)
...+|..+...|+++.|+.+|-+|+..+|.-.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 34678888888888888888888888776543
No 296
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=56.34 E-value=21 Score=23.86 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=18.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 162 RMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
.+|..+...|+++.|+.+|-+|+...|.
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 4566666666666666666666666665
No 297
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=56.12 E-value=27 Score=32.55 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q psy4130 123 PVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMND 172 (314)
Q Consensus 123 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 172 (314)
.......|...+..|+|.-|.+.+..++..+|++..+...++.+|.++|.
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666666666666666666666553
No 298
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=54.47 E-value=26 Score=22.67 Aligned_cols=30 Identities=13% Similarity=0.108 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 88 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
.+..+...|.-.-..|+|++|+.+|..+++
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455556556666777777776666665
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.23 E-value=78 Score=24.89 Aligned_cols=78 Identities=10% Similarity=0.013 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy4130 109 VIEYSKAIDCDNSN------PVYYCNRAASNNKLKNYKLALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAY 180 (314)
Q Consensus 109 ~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 180 (314)
...+++++....++ +. |..+-.-|...- +++...|.-.... .-..+..|...|..+...|++.+|...|
T Consensus 97 ~~lLErc~~~F~~~~rYknD~R-yLklWl~Ya~~~--~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVR-YLRIWMQYVNYI--DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHH-HHHHHHHHHTTC--SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHH-HHHHHHHHHHcc--CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45666777654332 22 222323333322 3555666666654 4567888889999999999999999999
Q ss_pred HHHHhhCCC
Q psy4130 181 TKAAELDPN 189 (314)
Q Consensus 181 ~~al~~~p~ 189 (314)
+.++.....
T Consensus 174 ~~Gi~~~A~ 182 (223)
T 4aez_C 174 QKGKRMKAK 182 (223)
T ss_dssp HHHHHHTCB
T ss_pred HHHHHcCCc
Confidence 999998755
No 300
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=53.69 E-value=27 Score=23.17 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
+..+...|...-..|+|++|+.+|..+++
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455555555666666666666665554
No 301
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=52.02 E-value=18 Score=22.72 Aligned_cols=14 Identities=29% Similarity=0.506 Sum_probs=9.8
Q ss_pred ChHHHHHHHHHhCC
Q psy4130 276 NPELVEQIFQQFGP 289 (314)
Q Consensus 276 ~p~~~~~l~~~~~~ 289 (314)
+|.+...+..+...
T Consensus 51 nP~v~~~i~kl~~a 64 (71)
T 2llw_A 51 NPEVFKKIQTLIAA 64 (71)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHc
Confidence 88877777776533
No 302
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=49.62 E-value=18 Score=23.15 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
-...+|+-+...|+|+.|+.+|+.++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 355678888888999999999998876
No 303
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.78 E-value=28 Score=24.27 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=9.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q psy4130 93 KNLGNTAMQQDKPEQAVIEYSKA 115 (314)
Q Consensus 93 ~~~g~~~~~~~~~~~A~~~~~~a 115 (314)
...|...-..++|++|+.+|..+
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~~A 44 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQHA 44 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 33333333344444444444433
No 304
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=48.76 E-value=1.5e+02 Score=29.03 Aligned_cols=60 Identities=7% Similarity=-0.074 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP--VYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 91 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
+...+|.++...++ +++.+.+...+..+.... .+-+.+|.++...|+-+.....+..+..
T Consensus 457 AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 457 ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 44566666665554 345555555555332111 2334556666566655444444444443
No 305
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=48.31 E-value=86 Score=26.78 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q psy4130 89 AEKYKNLGNTAMQQ--DKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI------DPH 155 (314)
Q Consensus 89 ~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~ 155 (314)
+.++-++|+.--.. ..-..++..|.+++.. ...+...|..+|-++.+.+++.+|+..+..|-.. ..+
T Consensus 255 PmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~re 334 (472)
T 3re2_A 255 PMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKD 334 (472)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGG
T ss_pred chhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCcc
Confidence 55666666655432 2223378888888863 3445667888999999999999999999887654 223
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC---------CCHHHHHHHHHHHHHhcccccCC
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAEL-DP---------NDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p---------~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
+.+.|-.+-.+...+ .. ..++.+... +| .++....+|-..|--.-.++|..
T Consensus 335 DeEIYKEf~eIAnel--iP---~~~k~a~~~~~~~G~~~~siL~DpecfA~LLrFYDgIC~WEEGS 395 (472)
T 3re2_A 335 DEEMYKEFHEIANDL--IP---NILKDAVAKADPSGTGSTNLTSDPKFFALVLQFYDGICLWEEGS 395 (472)
T ss_dssp GHHHHHHHHHHHHTH--HH---HHHHHHHTCC--------CGGGCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH--hh---HHHHhhhhccCCCCcchhhhccChHHHHHHHHHhhcceecccCC
Confidence 445554443332211 00 112222221 11 25666666666666666666654
No 306
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=44.26 E-value=95 Score=22.98 Aligned_cols=59 Identities=2% Similarity=-0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHH-H--HHHHHHcCCHHHHHHHHHHHHh
Q psy4130 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGR-M--GLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 127 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~-l--g~~~~~~g~~~~A~~~~~~al~ 185 (314)
+..+..++..|+|=+|=+.++.+-...+.. ...+.. + |..+...|+...|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777888899999999999999887654 233334 3 3345668999999999999877
No 307
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=44.17 E-value=1.4e+02 Score=25.05 Aligned_cols=112 Identities=7% Similarity=-0.076 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCHHHHHHH----HHHHHHcc--CHHHHHHHHHHHHHhCCC-cHHHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDC--DNSNPVYYCNR----AASNNKLK--NYKLALRDCQIAIKIDPH-YAKAY 160 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l----a~~~~~~~--~~~~A~~~~~~al~~~p~-~~~~~ 160 (314)
..+..++.-|.++++|++|++.+...... .-.....-..| -.+|.+.+ --++.+.-+.+.+..-|. .+.-
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r- 114 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVR- 114 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHH-
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHH-
Confidence 34666777788888888888875443321 11111111222 23333332 112223333333333332 2210
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
..-..+|+.+-.+.=...-.++..+..+|..+.+.+++.+|.
T Consensus 115 ---------~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 115 ---------KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp ---------HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 001234444444321223358899999999999999888884
No 308
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.27 E-value=95 Score=22.72 Aligned_cols=50 Identities=4% Similarity=-0.087 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy4130 141 LALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190 (314)
Q Consensus 141 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (314)
++...|.-.... .-..+..|..-|..+...|++.+|.+.|+.+++....-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 366666666654 45678888899999999999999999999999976553
No 309
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=43.14 E-value=37 Score=23.02 Aligned_cols=71 Identities=13% Similarity=-0.055 Sum_probs=40.7
Q ss_pred HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 135 KLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.....++|..+.+- +...+....+-......+...|+|++|....+.. + .|+.--.++.|..++|-.+++.
T Consensus 18 G~H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c-~pdlepw~ALce~rlGl~s~le 88 (115)
T 2uwj_G 18 GQHCHEEALCIAEW-LERLGQDEAARLIRISSLANQGRYQEALAFAHGN----P-WPALEPWFALCEWHLGLGAALD 88 (115)
T ss_dssp TTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----C-CGGGHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----C-CchHHHHHHHHHHhcccHHHHH
Confidence 34455666554433 3344443334444556677888888887554321 1 4556666777777777666653
No 310
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=42.13 E-value=79 Score=21.48 Aligned_cols=77 Identities=14% Similarity=-0.043 Sum_probs=44.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccc
Q psy4130 129 RAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208 (314)
Q Consensus 129 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 208 (314)
+|.+-......++|..+.+- +...+....+-......+...|+|++|....+... .|+.--.++.|..++|-.+
T Consensus 13 ~AL~gTG~H~HqEA~tIAdw-L~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s 86 (116)
T 2p58_C 13 IALIGTGNHYHEEANCIAEW-LHLKGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGS 86 (116)
T ss_dssp HHHHHHTTTCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHH
T ss_pred HHHHHccchHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHH
Confidence 33333344556666555443 34444433444445567788888888876654221 4556666777777777766
Q ss_pred cCC
Q psy4130 209 SAS 211 (314)
Q Consensus 209 ~A~ 211 (314)
++.
T Consensus 87 ~le 89 (116)
T 2p58_C 87 ALE 89 (116)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 311
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=41.68 E-value=74 Score=21.05 Aligned_cols=27 Identities=0% Similarity=-0.360 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC
Q psy4130 95 LGNTAMQQDKPEQAVIEYSKAIDCDNS 121 (314)
Q Consensus 95 ~g~~~~~~~~~~~A~~~~~~al~~~p~ 121 (314)
.|..++..|+|=+|-+.++..-...|.
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~~ 33 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKATG 33 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCCC
Confidence 455566667777777777666665543
No 312
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=40.70 E-value=52 Score=21.39 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=10.4
Q ss_pred HHccCHHHHHHHHHHHHH
Q psy4130 134 NKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 134 ~~~~~~~~A~~~~~~al~ 151 (314)
-..|+|++|+.+|..++.
T Consensus 27 D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 455666666666655553
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.16 E-value=1.2e+02 Score=22.56 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=39.0
Q ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy4130 142 ALRDCQIAIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189 (314)
Q Consensus 142 A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (314)
+...|...... .-..+..|..-|..+...|++.+|.+.|+.++.....
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 55566665554 4567888899999999999999999999999997754
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=38.96 E-value=1.4e+02 Score=26.15 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 89 AEKYKNLGNTAMQQDK--PEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
+.++-++|+.--..-- -..++..|.+++.. ...+...|..+|-++.+.+++.+|+..+-.+-..
T Consensus 277 PmALgnLgDLEe~~pt~gr~~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 277 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHSCCTTCCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhcchhhHhhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 4566666665543221 12477888888863 3445667888999999999999999998877653
No 315
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=37.22 E-value=35 Score=21.83 Aligned_cols=27 Identities=22% Similarity=0.100 Sum_probs=20.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 126 YCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 126 ~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
...+|.=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 345677777788888888888887753
No 316
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=36.42 E-value=18 Score=18.28 Aligned_cols=9 Identities=44% Similarity=0.878 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q psy4130 305 NGDGSSGSS 313 (314)
Q Consensus 305 ~~~~~~~~~ 313 (314)
+++|++||+
T Consensus 13 ggggggggs 21 (37)
T 2i9o_A 13 GGGGGGGGS 21 (37)
T ss_dssp CSCCCCSCS
T ss_pred cCCCCCcch
Confidence 444444444
No 317
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=35.39 E-value=69 Score=20.56 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=9.5
Q ss_pred HHccCHHHHHHHHHHHHH
Q psy4130 134 NKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 134 ~~~~~~~~A~~~~~~al~ 151 (314)
-..|+|++|+..|..++.
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344555555555555543
No 318
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=35.27 E-value=69 Score=21.13 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=7.2
Q ss_pred HccCHHHHHHHHHHHH
Q psy4130 135 KLKNYKLALRDCQIAI 150 (314)
Q Consensus 135 ~~~~~~~A~~~~~~al 150 (314)
..|+|++|+.+|..++
T Consensus 27 ~~g~y~eAl~~Y~~Ai 42 (93)
T 1wfd_A 27 AESRYQQALVCYQEGI 42 (93)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 3444444444444443
No 319
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=34.91 E-value=92 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.174 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
.++..++.+++..++|++|+...++++.
T Consensus 191 aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 191 AARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 4455555555555555555555555553
No 320
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=34.24 E-value=1.1e+02 Score=27.31 Aligned_cols=27 Identities=4% Similarity=-0.128 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
++..+|.+|+.+++|++|+..+++++.
T Consensus 205 A~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 205 VLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344445555555555555555555543
No 321
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=32.88 E-value=1e+02 Score=27.07 Aligned_cols=47 Identities=11% Similarity=-0.081 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 105 PEQAVIEYSKAIDCDNS--------NPVYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 105 ~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
|+.-+..++.|+..-|. ...++..+|.+|+.+++|++|+..+++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34556667777765443 235788899999999999999999999884
No 322
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=32.49 E-value=70 Score=22.20 Aligned_cols=15 Identities=40% Similarity=0.381 Sum_probs=6.6
Q ss_pred ccCHHHHHHHHHHHH
Q psy4130 136 LKNYKLALRDCQIAI 150 (314)
Q Consensus 136 ~~~~~~A~~~~~~al 150 (314)
.|+|++|+.+|..++
T Consensus 31 ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 31 AGNYEEALQLYQHAV 45 (117)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 344444444444433
No 323
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.24 E-value=2.4e+02 Score=24.12 Aligned_cols=89 Identities=7% Similarity=-0.105 Sum_probs=62.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC-------C--------CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Q psy4130 97 NTAMQQDKPEQAVIEYSKAIDCD-------N--------SN--PVYYCNRAASNNKLKNYKLALRDCQIAIKI------- 152 (314)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~al~~~-------p--------~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 152 (314)
.+.....+.++|++.+++..... . .. ..+...++..|...++.++|...++++-..
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 34456778999999988764321 0 01 234566788899999999999999998753
Q ss_pred CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 153 DPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 153 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
+|. +...|...+..+...+++..+....-..+.
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 221 234556667778889999988887777665
No 324
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=31.97 E-value=1.2e+02 Score=26.69 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy4130 158 KAYGRMGLAYTQMNDYKAALEAYTKAAE 185 (314)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (314)
.++..+|.++...|+|++|+...++++.
T Consensus 197 aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 197 AAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666554
No 325
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=31.74 E-value=1.1e+02 Score=20.07 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD 119 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 119 (314)
....++.....|..+++.++|.+|...|+++..+.
T Consensus 49 ~e~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~t 83 (106)
T 2vkj_A 49 KEKKARSLIAEGKDLFETANYGEALVFFEKALNLS 83 (106)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHccc
Confidence 34677888888999999999999999999988653
No 326
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=31.56 E-value=1.4e+02 Score=26.62 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCC-----------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130 140 KLALRDCQIAIKIDP-----------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187 (314)
Q Consensus 140 ~~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (314)
+.-+++++.|+..-| +...++..+|.+|+..++|++|+...++++...
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 444555555555433 234688899999999999999999999998753
No 327
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=31.55 E-value=15 Score=24.63 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=13.6
Q ss_pred HHhhChHHHHHHHHHhCCh
Q psy4130 272 LEQRNPELVEQIFQQFGPA 290 (314)
Q Consensus 272 ~~~~~p~~~~~l~~~~~~~ 290 (314)
++..+|+..++|++.++..
T Consensus 69 Lqk~D~~~R~qL~~KfG~e 87 (111)
T 3k6g_A 69 LQKDDEDTREALVKKFGAQ 87 (111)
T ss_dssp HTCCCHHHHHHHHHHHCHH
T ss_pred HhcCCHHHHHHHHHHHhhH
Confidence 3456888888888777544
No 328
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=31.40 E-value=97 Score=21.05 Aligned_cols=33 Identities=12% Similarity=-0.179 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
...+++.....|....+.|+|++|...++++-+
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677788888888899999999888887754
No 329
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=30.80 E-value=1e+02 Score=20.86 Aligned_cols=33 Identities=9% Similarity=-0.119 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
...+++.....+....+.|+|++|...++++-+
T Consensus 14 ~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 14 NSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 446677788888888889999999888877654
No 330
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=29.76 E-value=1.4e+02 Score=26.10 Aligned_cols=46 Identities=13% Similarity=0.008 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 106 EQAVIEYSKAIDCDNS--------NPVYYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 106 ~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
+.-+..++.|+..-|. ...++..+|.+|+.+++|++|+..+++++.
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4556666777765443 235788899999999999999999999884
No 331
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=29.33 E-value=1.2e+02 Score=26.74 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy4130 125 YYCNRAASNNKLKNYKLALRDCQIAIK 151 (314)
Q Consensus 125 ~~~~la~~~~~~~~~~~A~~~~~~al~ 151 (314)
++..+|.+|+..++|++|+..+++++.
T Consensus 204 a~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 204 AQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 444455555555555555555555554
No 332
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=29.21 E-value=95 Score=18.57 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=9.4
Q ss_pred hccCChHHHHHHHHhhcC
Q psy4130 226 KVLSDPSIQQVFGELFAN 243 (314)
Q Consensus 226 ~~~~~p~~~~~l~~~~~~ 243 (314)
.++.||++...+..+..+
T Consensus 16 ~~m~dP~~~~~lq~i~~N 33 (62)
T 2lnm_A 16 MAFQNPRVQAALMECSEN 33 (62)
T ss_dssp HHTTSHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHC
Confidence 444555555555555433
No 333
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=27.86 E-value=56 Score=24.49 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=23.2
Q ss_pred Hhcc-CChHHHHHHHHhhcCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHhhChHHHHHHHH
Q psy4130 225 TKVL-SDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAAQLEQRNPELVEQIFQ 285 (314)
Q Consensus 225 ~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~~~l~~ 285 (314)
..+. ++|.+..+...+..++ .-+ +.+.+++.+.||.+++.+.+
T Consensus 26 ~~L~~~~Pqf~qlRq~vqqNP-----------qlL-------~~lLqqig~~NPqL~qlI~q 69 (171)
T 2qsf_X 26 GSIGLTVEDLLSLRQVVSGNP-----------EAL-------APLLENISARYPQLREHIMA 69 (171)
T ss_dssp --CCCCHHHHHHHHHHHHTCG-----------GGH-------HHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHCH-----------HHH-------HHHHHHHHhhCHHHHHHHHH
Confidence 3444 6677766666665552 112 24455666667776665544
No 334
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=27.76 E-value=1e+02 Score=18.54 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=14.3
Q ss_pred HHHHHHHhhChHHHHHHHH
Q psy4130 267 QIAAQLEQRNPELVEQIFQ 285 (314)
Q Consensus 267 ~~~~~~~~~~p~~~~~l~~ 285 (314)
.+.+++.+.+|++++.+.+
T Consensus 29 ~lLqql~~~nP~l~~~I~~ 47 (61)
T 2f4m_B 29 ALLQQIGRENPQLLQQISQ 47 (61)
T ss_dssp HHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHH
Confidence 5566788889988887665
No 335
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=27.55 E-value=1.2e+02 Score=20.71 Aligned_cols=33 Identities=18% Similarity=0.003 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 85 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
...+++.....|....+.|+|++|...++++-+
T Consensus 18 ~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 18 NSGNARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677788888888889999999888887743
No 336
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=26.64 E-value=1.3e+02 Score=26.46 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy4130 139 YKLALRDCQIAIKIDPH--------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187 (314)
Q Consensus 139 ~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (314)
|+.-+++++.|+..-|. ...++..+|.+|+..++|++|+...++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 34456666666655432 34688899999999999999999999999753
No 337
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=25.49 E-value=1.4e+02 Score=20.87 Aligned_cols=34 Identities=18% Similarity=-0.026 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy4130 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID 117 (314)
Q Consensus 84 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 117 (314)
....+++.....|....+.|+|++|...++++-+
T Consensus 32 ~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 32 LNSGNARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677777788888889999999888887743
No 338
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=25.34 E-value=3.4e+02 Score=23.69 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q psy4130 89 AEKYKNLGNTAMQQD--KPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI------DPH 155 (314)
Q Consensus 89 ~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~ 155 (314)
+.++.++|..-.-.- ....++..|++++.. .......|..+|-.+.+.++|.+|+..+..+-.. +.+
T Consensus 262 PmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~YnY~re 341 (489)
T 4gq4_A 262 PMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCRE 341 (489)
T ss_dssp HHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCTT
T ss_pred chhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhhhhhcccccc
Confidence 456666666654322 223467788888873 3445667888899999999999999999988654 334
Q ss_pred cHHHHHHHHHH
Q psy4130 156 YAKAYGRMGLA 166 (314)
Q Consensus 156 ~~~~~~~lg~~ 166 (314)
+.+.|-.+-.+
T Consensus 342 DeEiYke~~eI 352 (489)
T 4gq4_A 342 DEEIYKEFFEV 352 (489)
T ss_dssp CHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55666544433
No 339
>2lqh_B Forkhead box O3, FOXO3A; promiscuous binding, intrinsic disorder, transcription; NMR {Homo sapiens} PDB: 2lqi_B
Probab=30.65 E-value=15 Score=20.03 Aligned_cols=9 Identities=44% Similarity=0.944 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q psy4130 304 GNGDGSSGS 312 (314)
Q Consensus 304 ~~~~~~~~~ 312 (314)
.+++||+||
T Consensus 23 sdgggsggg 31 (52)
T 2lqh_B 23 SDGGGSGGG 31 (52)
Confidence 344444443
No 340
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=30.04 E-value=16 Score=34.16 Aligned_cols=53 Identities=19% Similarity=0.096 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcccccCC
Q psy4130 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211 (314)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 211 (314)
.....+...+..|+|..|.+..+.++..+|++..+...++.++.++|...+..
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~ 515 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTENA 515 (668)
Confidence 34456777788999999999999999999999999999999999999877664
No 341
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.59 E-value=60 Score=25.39 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=36.4
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy4130 131 ASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181 (314)
Q Consensus 131 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 181 (314)
.++.+.|.|++|...+++.+.-+|.+-.....|..+-.+..-+..-+..|.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFS 172 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFS 172 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCC
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhcc
Confidence 456778888888888888888777777777777777666665555554443
No 342
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.37 E-value=2e+02 Score=25.28 Aligned_cols=29 Identities=21% Similarity=-0.007 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy4130 124 VYYCNRAASNNKLKNYKLALRDCQIAIKI 152 (314)
Q Consensus 124 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 152 (314)
.++..+|.+|+..++|++|+..+++++..
T Consensus 198 aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 198 SAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 46778899999999999999999999864
No 343
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.98 E-value=89 Score=21.67 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy4130 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184 (314)
Q Consensus 137 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (314)
..|.+|..+..++|+++- .|+.+.|+.+|++.+
T Consensus 17 ~~h~~AF~~Is~AL~~DE---------------~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE---------------LGQKEEAKNYYKQGI 49 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHH
Confidence 446667777777776652 366666666666554
No 344
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.90 E-value=53 Score=25.31 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=18.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q psy4130 97 NTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAAS 132 (314)
Q Consensus 97 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 132 (314)
.++.+.|.|++|.+.+++....++.+......|..+
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 345667777777777777666665555444444333
No 345
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=26.07 E-value=21 Score=33.38 Aligned_cols=51 Identities=14% Similarity=-0.009 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHH
Q psy4130 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140 (314)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 140 (314)
+.....|...+..|+|.-|.+..+.++..+|++..+...++.+|.++|.-.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 344555666667777777777777777777777777777777776666443
No 346
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=20.28 E-value=2.1e+02 Score=25.09 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy4130 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186 (314)
Q Consensus 156 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (314)
...++..+|.+++..++|++|....++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4467888999999999999999999998864
Done!