RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4130
(314 letters)
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 150 bits (381), Expect = 9e-46
Identities = 59/127 (46%), Positives = 83/127 (65%)
Query: 81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
+EE EAE+ K GN M+ + E AV Y KAI+ + +N VY+CNRAA+ +KL NY
Sbjct: 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA 63
Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
A++DC+ AI IDP Y+KAYGRMGLA + +N + A+ Y KA ELDP++ Y +N++ A
Sbjct: 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Query: 201 MSNLNNS 207
L +
Sbjct: 124 ELKLREA 130
Score = 51.1 bits (123), Expect = 2e-08
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ D A+ G ++ +++AA+ Y KA EL+P + +Y N AA S L N + A
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 147 bits (373), Expect = 4e-44
Identities = 35/125 (28%), Positives = 57/125 (45%)
Query: 81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
P + AE+ K N + E A+ YS+AI+ + SN +YY NR+ + + + Y
Sbjct: 5 PADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYG 64
Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
AL D AI++D Y K Y R + + ++AAL Y ++ P+D Q
Sbjct: 65 YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 124
Query: 201 MSNLN 205
+
Sbjct: 125 NKIVK 129
Score = 40.4 bits (95), Expect = 2e-04
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
Y + DY+ A++ Y++A EL+P++ +Y N A A
Sbjct: 20 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 66
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 144 bits (365), Expect = 2e-43
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ + K GN A+ + A+ YS+AI D N V Y NR+A+ K +Y+ A D
Sbjct: 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
+ + P + K Y R A +N ++ A Y + + + N+P +Q
Sbjct: 63 KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115
Score = 39.9 bits (94), Expect = 2e-04
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 164 GLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
G + + AL+ Y++A +LDP++ + +N AA + + A
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKA 57
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 144 bits (366), Expect = 2e-43
Identities = 41/114 (35%), Positives = 60/114 (52%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A KN GN Q+ QA+ Y++AI + + Y NRAA KL ++LAL+DC+
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
I+++P + K Y R A M DY A++ Y KA +LD + A+ Q M
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128
Score = 47.2 bits (113), Expect = 5e-07
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
++P A G Q DY A++ YT+A + +P D +N A + L
Sbjct: 8 HSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQ 67
Query: 209 SA 210
A
Sbjct: 68 LA 69
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 143 bits (364), Expect = 3e-43
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A++ KN GN ++ A+ Y++A+ D N + Y NRAA KL ++ AL DC
Sbjct: 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
I++D + K Y R M ++ A AY A ++DP++ ++ +
Sbjct: 72 TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125
Score = 43.4 bits (103), Expect = 1e-05
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
I+P A+ G Y + DY A+ Y +A + DP + + +N A ++ L
Sbjct: 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQ 64
Query: 209 SA 210
A
Sbjct: 65 RA 66
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 143 bits (362), Expect = 2e-42
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
+ E++K K+ GN AM + + +A+ Y++A+ +NP+Y NRAA+ + ++
Sbjct: 3 RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62
Query: 141 LALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL-------- 192
A D ++A +DP Y+KA+ R+GLA M DYK A EAY K E + N
Sbjct: 63 KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122
Query: 193 --------YANNMQAAMSNLNNSSSASGSGGVFPGLSEM 223
+ ++++++ AS G P LS +
Sbjct: 123 TTKRKIEEANRGAEPPADDVDDAAGASRGAGGMPDLSSL 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 141 bits (358), Expect = 2e-42
Identities = 31/114 (27%), Positives = 53/114 (46%)
Query: 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
++AE+ + G + AV Y++ I + Y NRAA+ KL ++ A+ DC
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
AI+ DP++ +AY R A + +Y +ALE A D ++ +
Sbjct: 62 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 115
Score = 40.3 bits (95), Expect = 1e-04
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
D+ A++AYT+ + P D +N AA++ L + A
Sbjct: 19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 57
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 137 bits (348), Expect = 1e-40
Identities = 30/108 (27%), Positives = 47/108 (43%)
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
A++ K GN K +A Y +AI + VYY NRA K++ + A
Sbjct: 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA 62
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
L DC+ A+++D KA+ +G +M Y A+ +A L
Sbjct: 63 LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110
Score = 42.3 bits (100), Expect = 3e-05
Identities = 10/62 (16%), Positives = 16/62 (25%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
+ A+ G Y A Y +A +P +Y N +
Sbjct: 1 GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60
Query: 209 SA 210
A
Sbjct: 61 QA 62
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 133 bits (337), Expect = 6e-39
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 80 SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---NSNPVYYCNRAASNNKL 136
P E+ + GN + A+ Y++A+ D V + NRAA + KL
Sbjct: 19 RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
++Y A + AI+ D KA R A ++ A+ + L+P + ++
Sbjct: 79 EDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138
Query: 197 MQAAMSNLNNSSSA 210
++ N++ SS
Sbjct: 139 LR----NISGPSSG 148
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 129 bits (326), Expect = 2e-37
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+A K K LGN A ++ + A+ Y KA + D +N Y N+AA + +Y C+
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 148 IAIKIDPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
AI++ AKAY R+G +Y + YK A+ Y K+ + QA
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121
Score = 45.8 bits (109), Expect = 1e-06
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
A +G + D+ AL+ Y KA ELDP + Y N A + +
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKC 57
Score = 29.2 bits (66), Expect = 0.94
Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 77 INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
+ E+ + A+ Y +GN+ +++K + A+ Y+K++ + V K
Sbjct: 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVL--------KKC 118
Query: 137 KNYKLALRD 145
+ + L++
Sbjct: 119 QQAEKILKE 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 132 bits (333), Expect = 7e-37
Identities = 38/200 (19%), Positives = 73/200 (36%), Gaps = 9/200 (4%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A++ K GN K +A Y +AI + VYY NRA K++ + AL DC+
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
A+++D KA+ +G +M Y A+ +A L L + + +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 208 SSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQ 267
+ S ++ + + L A ++ N +
Sbjct: 123 KRWN---------SIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173
Query: 268 IAAQLEQRNPELVEQIFQQF 287
A +E ++ + + + + F
Sbjct: 174 QQACIEAKHDKYMADMDELF 193
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 127 bits (320), Expect = 1e-36
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL 141
+ + A K+LGN A +Q E+A + Y KAI+ D SN +Y N+AA + K +
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
Query: 142 ALRDCQIAIKIDPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
++ C+ A+++ AKA R G A+ + ND A++ + ++ +
Sbjct: 61 CVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 31.1 bits (71), Expect = 0.19
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 26 NAESKEG-IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYS---NINFS 80
NA K+ E A KA ++ P NI +N F+ E +Q+ +
Sbjct: 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAA-VYFEEKKFAECVQFCEKAVEVGRE 74
Query: 81 PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSN 122
+ K+ A+ GN +Q+ AV + +++
Sbjct: 75 TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 120 bits (303), Expect = 2e-34
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ EK K GN+ +Q +AV Y + I NPV Y N+A + KL Y A++ CQ
Sbjct: 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA-ELDPNDPLYANN 196
++ R L Y ++ + A+ + E+D Y +
Sbjct: 63 QGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGYDRS 111
Score = 42.3 bits (100), Expect = 2e-05
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ G + + Y+ A+ Y + P +P+ +N A+ L + A
Sbjct: 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQA 57
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 118 bits (299), Expect = 5e-32
Identities = 31/112 (27%), Positives = 51/112 (45%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE+ + G + AV Y++ I + Y NRAA+ KL ++ A+ DC
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
AI+ DP++ +AY R A + +Y +ALE A D ++ +
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250
Score = 106 bits (267), Expect = 2e-27
Identities = 21/109 (19%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A+K K GN + + ++A+ Y+KA + + + Y NRAA+ + Y+ A+
Sbjct: 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL-HKDITYLNNRAAAEYEKGEYETAISTLN 62
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
A++ Y + ++ ++ + L K E
Sbjct: 63 DAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111
Score = 90.7 bits (226), Expect = 1e-21
Identities = 18/123 (14%), Positives = 37/123 (30%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
++ + + E+ + + + ++ A++
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
IK P A+ Y A ++ + A+ KA E DPN A +
Sbjct: 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 223
Query: 208 SSA 210
+SA
Sbjct: 224 ASA 226
Score = 71.0 bits (175), Expect = 2e-14
Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 8/144 (5%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
E ++ + P+ + A E F ++ Y+ I +P + A
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKE-YFTKSDWPNAVKAYTEMIKRAPED-----AR 174
Query: 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
Y N + +A+ + +KAI+ D + Y +A + +K Y AL A
Sbjct: 175 GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234
Query: 151 KIDPHYAKAYGRMGLAYTQMNDYK 174
D + +
Sbjct: 235 TKDAEVNNGSSAREIDQLYYKASQ 258
Score = 69.1 bits (170), Expect = 9e-14
Identities = 9/86 (10%), Positives = 23/86 (26%), Gaps = 1/86 (1%)
Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
K + + A+ A ++ A + +Y+ A+ A
Sbjct: 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAV 65
Query: 185 ELDPNDPLYANNMQAAMSNLNNSSSA 210
E + + + + N+
Sbjct: 66 EQGREMRADYKVISKSFARIGNAYHK 91
Score = 49.9 bits (120), Expect = 3e-07
Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
A G + + + A+E Y KA EL + NN AA
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGE 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 116 bits (292), Expect = 4e-30
Identities = 22/111 (19%), Positives = 42/111 (37%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ EK+ LG + + A+ ++ A+D D N + Y RA + K AL D
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198
I + + A + G + A + + K + +P++
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112
Score = 110 bits (276), Expect = 6e-28
Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 4/122 (3%)
Query: 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----YCNRAASNNKLKNYKLALRD 145
K ++ + A +Y + + S Y +K + A+R
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
C ++++P A AY Y A++ Y A E + ND ++ A L
Sbjct: 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354
Query: 206 NS 207
S
Sbjct: 355 QS 356
Score = 90.4 bits (225), Expect = 7e-21
Identities = 18/113 (15%), Positives = 43/113 (38%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
E ++ ++ A A+ K ++ + RA K + A+ D +
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
A K+ +A+ ++ Y Q+ D++ +L + +LD + + +
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231
Score = 83.1 bits (206), Expect = 3e-18
Identities = 18/138 (13%), Positives = 46/138 (33%), Gaps = 16/138 (11%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + +++ +P +A+ + A + N + + +L +++L+L + +
Sbjct: 154 AELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213
Query: 149 AIKIDPHYAKAY------------GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA-- 194
+K+D + + + + Y A Y + +P+ Y
Sbjct: 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVR 273
Query: 195 --NNMQAAMSNLNNSSSA 210
+ S A
Sbjct: 274 SKERICHCFSKDEKPVEA 291
Score = 82.7 bits (205), Expect = 4e-18
Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 15/134 (11%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNR---------------AASNNKL 136
G+ ++Q K ++A ++ K + + S A
Sbjct: 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
+Y A+ +++ A+ + + + + A+ A++L ++
Sbjct: 134 ADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYK 193
Query: 197 MQAAMSNLNNSSSA 210
+ L + +
Sbjct: 194 ISTLYYQLGDHELS 207
Score = 80.8 bits (200), Expect = 2e-17
Identities = 25/177 (14%), Positives = 42/177 (23%), Gaps = 28/177 (15%)
Query: 57 DIESLFQL---YYK----DEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108
D+E +L + L + ++ P Y + K + A
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVFLAMGKSKAA 56
Query: 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY-------- 160
+ + +K I R K A D + +K +P +
Sbjct: 57 LPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116
Query: 161 -------GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
L DY AA+ K E+ D A
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKA 173
Score = 75.4 bits (186), Expect = 1e-15
Identities = 16/77 (20%), Positives = 22/77 (28%)
Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
++ + AL A+ DP AY R + M KAAL
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60
Query: 181 TKAAELDPNDPLYANNM 197
TK L +
Sbjct: 61 TKVIALKMDFTAARLQR 77
Score = 72.7 bits (179), Expect = 1e-14
Identities = 12/83 (14%), Positives = 35/83 (42%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ + + + +KP +A+ S+ + + N +RA + + Y A++D + A +
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334
Query: 152 IDPHYAKAYGRMGLAYTQMNDYK 174
+ + + + A + +
Sbjct: 335 HNENDQQIREGLEKAQRLLKQSQ 357
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 117 bits (294), Expect = 6e-30
Identities = 22/116 (18%), Positives = 44/116 (37%)
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
+ + EK+ LG + + A+ ++ A+D D N + Y RA + K A
Sbjct: 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA 79
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ 198
L D I++ + A + G + A + + K + +P++
Sbjct: 80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135
Score = 108 bits (272), Expect = 6e-27
Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 4/125 (3%)
Query: 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----YCNRAASNNKLKNYKLALRD 145
K ++ + A +Y + + S Y +K + A+R
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
C ++++P A AY Y A++ Y A E + ND ++ A L
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377
Query: 206 NSSSA 210
S
Sbjct: 378 QSQKR 382
Score = 90.9 bits (226), Expect = 1e-20
Identities = 18/113 (15%), Positives = 43/113 (38%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
E ++ ++ A A+ K ++ + RA K + A+ D +
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 201
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
A K+ +A+ ++ Y Q+ D++ +L + +LD + + +
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254
Score = 82.0 bits (203), Expect = 1e-17
Identities = 14/134 (10%), Positives = 44/134 (32%), Gaps = 15/134 (11%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYC---------------NRAASNNKL 136
G+ ++Q K ++A ++ K + + S ++A +
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS 156
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
+Y A+ +++ A+ + + + + A+ A++L ++
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216
Query: 197 MQAAMSNLNNSSSA 210
+ L + +
Sbjct: 217 ISTLYYQLGDHELS 230
Score = 79.0 bits (195), Expect = 1e-16
Identities = 25/177 (14%), Positives = 42/177 (23%), Gaps = 28/177 (15%)
Query: 57 DIESLFQL---YYK----DEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQA 108
D+E +L + L + ++ P Y + K + A
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVFLAMGKSKAA 79
Query: 109 VIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG------- 161
+ + +K I R K A D + +K +P +
Sbjct: 80 LPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139
Query: 162 --------RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
L DY AA+ K E+ D A
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA 196
Score = 75.9 bits (187), Expect = 1e-15
Identities = 18/172 (10%), Positives = 57/172 (33%), Gaps = 14/172 (8%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASN-----------VDIESLFQLYYKDEVLQWYSN-INF 79
E+++ + + + D+ ++ E L + + Y + +
Sbjct: 227 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286
Query: 80 SPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY 139
P + + + + + +KP +A+ S+ + + N +RA + + Y
Sbjct: 287 EP-SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY 345
Query: 140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
A++D + A + + + + + A + + + +
Sbjct: 346 DEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397
Score = 57.0 bits (138), Expect = 2e-09
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
++ + Y ++ D + + +G AL + A
Sbjct: 5 HHHSSGVDLGTENLYFQSMAD-----------VEKHLELGKKLLAAGQLADALSQFHAAV 53
Query: 185 ELDPNDPLYANNMQAAMSNLNNSSSA 210
+ DP++ + + S +A
Sbjct: 54 DGDPDNYIAYYRRATVFLAMGKSKAA 79
Score = 51.2 bits (123), Expect = 2e-07
Identities = 22/188 (11%), Positives = 53/188 (28%), Gaps = 31/188 (16%)
Query: 19 ELLRDTLNAESKEG-IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYK----DEVLQ 72
L ++ ++G A P + E + + K E ++
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS-KERICHCFSKDEKPVEAIR 316
Query: 73 WYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAA 131
S + P K+ + ++ ++A+ +Y A + + ++
Sbjct: 317 VCSEVLQMEPDN-----VNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
Query: 132 SNNKLKNYKLALRD------------------CQIAIKIDPHYAKAYGRMGLAYTQMNDY 173
+ LK + ++A++ P + A + D
Sbjct: 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDI 431
Query: 174 KAALEAYT 181
AA E +
Sbjct: 432 AAAKEVLS 439
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 109 bits (273), Expect = 6e-29
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 82 TEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----------------VY 125
EE A K GN ++++ +A+++Y +A+D
Sbjct: 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90
Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
N A NK K+Y A+ +KID + KA ++G+A + A E KAA
Sbjct: 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150
Query: 186 LDPNDPLYANNMQAA 200
L+PN+ N+ +
Sbjct: 151 LNPNNLDIRNSYELC 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 107 bits (269), Expect = 8e-29
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 19/130 (14%)
Query: 80 SPTEEVKIE-AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------------------DN 120
S E+ K++ E + GN Q ++A+ Y A+ D
Sbjct: 1 SNAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR 60
Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
N Y N + + + A +K + KA R A A E
Sbjct: 61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDL 120
Query: 181 TKAAELDPND 190
P
Sbjct: 121 KLLLRNHPAA 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 114 bits (286), Expect = 9e-29
Identities = 33/104 (31%), Positives = 53/104 (50%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
AE+ K N + E A+ YS+AI+ + SN +YY NR+ + + + Y AL D
Sbjct: 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
AI++D Y K Y R + + ++AAL Y ++ P+D
Sbjct: 65 RAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 108
Score = 39.3 bits (92), Expect = 0.001
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
A+ Y + DY+ A++ Y++A EL+P++ +Y N A A
Sbjct: 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYA 59
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 110 bits (276), Expect = 3e-28
Identities = 45/261 (17%), Positives = 93/261 (35%), Gaps = 36/261 (13%)
Query: 31 EGIEVAVECLCK------------AYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNIN 78
G+E A++ + K A+ I +L Y+ + +
Sbjct: 79 YGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKE 134
Query: 79 FS--PTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------------- 123
+EE ++ K G ++ K +QA+++Y K +
Sbjct: 135 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 194
Query: 124 --VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
+ N A + KL+ + A+ C A+++D + K R G A+ +ND++ A +
Sbjct: 195 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254
Query: 182 KAAELDPNDPLYANNMQAAMSNLN--NSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE 239
K +L PN+ + + + +F L+E K ++ S +
Sbjct: 255 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTD 314
Query: 240 LFANPGQQATATDGSNTGIQA 260
+Q + T GS + ++
Sbjct: 315 T-EMKEEQKSNTAGSQSQVET 334
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 110 bits (278), Expect = 1e-27
Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 3/209 (1%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A K+ GN + K + A+ Y+ A++ +PV+Y N +A + + K +
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A+++ P Y+K R A + + A+ + + + M N S
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMS 124
Query: 209 SASGSGGVFPGLSEMSTKVLSDPS-IQQVFGELFANPGQQATATD-GSNTGIQALLNASQ 266
G + T++ + P+ ++ E + A+ A + S
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184
Query: 267 QIAAQLEQRNPELVEQIFQQFGPALNNFK 295
+ +L L ++ + + A +F
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADESFT 213
Score = 102 bits (257), Expect = 9e-25
Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 1/123 (0%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A ++ G ++ P A + KAI+ Y A +
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPRVNSYIYMALIMADRNDSTEYYNYFD 294
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
A+K+D + + Y G + +Y A + + KA ELDP + + N
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF 354
Query: 208 SSA 210
Sbjct: 355 DDC 357
Score = 99.8 bits (249), Expect = 1e-23
Identities = 24/123 (19%), Positives = 49/123 (39%)
Query: 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143
E+ Y + ++ + + KA+ D++N Y +R N L+NY A
Sbjct: 265 ELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAG 324
Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
+D A ++DP Y ++ + N + +++A P P N +++
Sbjct: 325 KDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD 384
Query: 204 LNN 206
N+
Sbjct: 385 KND 387
Score = 99.8 bits (249), Expect = 1e-23
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 17/173 (9%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
A + KA ++ P+NI P + ++ D+ +S P E
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLAC-LAYRENKFDDCETLFSEAKRKFPEA-----PEVPN 376
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK---------LKNYKLALR 144
++ ++A+ +Y AI+ +N Y A K ++N+ A
Sbjct: 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436
Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ A K+DP +A + Q D A+ + ++A+L +
Sbjct: 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489
Score = 97.1 bits (242), Expect = 1e-22
Identities = 21/109 (19%), Positives = 35/109 (32%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ Y + G +QA ++ KA + D N Y A + +
Sbjct: 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSE 363
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
A + P + T ND+ AL+ Y A EL+ +
Sbjct: 364 AKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412
Score = 91.7 bits (228), Expect = 7e-21
Identities = 20/131 (15%), Positives = 42/131 (32%), Gaps = 9/131 (6%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
Y L A +++K + +S+A P A ++ AL+ +
Sbjct: 338 IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397
Query: 149 AIKIDPHYAKAYGRMGLAYTQ---------MNDYKAALEAYTKAAELDPNDPLYANNMQA 199
AI+++ Y + + + ++ A KA++LDP +
Sbjct: 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQ 457
Query: 200 AMSNLNNSSSA 210
+ A
Sbjct: 458 MKLQQEDIDEA 468
Score = 79.0 bits (195), Expect = 1e-16
Identities = 29/210 (13%), Positives = 62/210 (29%), Gaps = 22/210 (10%)
Query: 18 KELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPA-------------SNVDIESLFQL 64
+ +L LN ++ ++ + A P + S + S F +
Sbjct: 111 EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI 170
Query: 65 YYKDEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNS-- 121
+ + Y + ++ + + +A + + +D +N
Sbjct: 171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230
Query: 122 -----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAA 176
+ + + A D + AI++ P +Y M L ND
Sbjct: 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEY 289
Query: 177 LEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ KA +LD N+ + L N
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQN 319
Score = 59.4 bits (144), Expect = 4e-10
Identities = 8/106 (7%), Positives = 27/106 (25%), Gaps = 11/106 (10%)
Query: 89 AEKYKNLGNT---------AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNY 139
Y + + +A KA D + A + ++
Sbjct: 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI 465
Query: 140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
A+ + + + + + + + + + + A+
Sbjct: 466 DEAITLFEESADLARTMEEKL--QAITFAEAAKVQQRIRSDPVLAK 509
Score = 45.9 bits (109), Expect = 9e-06
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
YA A G + + Y A++ Y A EL + Y +N+ A ++ +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFY-SNLSACYVSVGD 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 105 bits (263), Expect = 2e-25
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Query: 77 INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
SP + + A + KN GN +A+ Y AI+ D + PV+Y N +A
Sbjct: 14 KGLSP-SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYIST 72
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
+ + + A++I P ++KA R A + ++ A+ + + D
Sbjct: 73 GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIE 131
Score = 100 bits (250), Expect = 9e-24
Identities = 20/123 (16%), Positives = 44/123 (35%)
Query: 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143
+ Y L T ++ ++ + KA+D + P Y +R L++YK A
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330
Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
D Q A ++P Y ++ + + + + + P P +++
Sbjct: 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD 390
Query: 204 LNN 206
+
Sbjct: 391 RGD 393
Score = 98.6 bits (246), Expect = 4e-23
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 1/123 (0%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
A G ++ A + ++I+ + P Y A + +N + + Q
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESIN-LHPTPNSYIFLALTLADKENSQEFFKFFQ 300
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
A+ ++P Y Y G Y + DYK A E + KA L+P + + +
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKF 360
Query: 208 SSA 210
+ +
Sbjct: 361 TES 363
Score = 94.0 bits (234), Expect = 1e-21
Identities = 17/132 (12%), Positives = 32/132 (24%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
Y + G + A ++ KA + N Y A K + +
Sbjct: 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
P + T D+ A++ Y A L+ + + +
Sbjct: 370 TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429
Query: 209 SASGSGGVFPGL 220
S
Sbjct: 430 RQSSQDPTQLDE 441
Score = 89.8 bits (223), Expect = 3e-20
Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 24/180 (13%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
A E KA + P+N+ P + L++ E +++ PT E
Sbjct: 329 AKEDFQKAQSLNPENVYPYIQLAC-LLYKQGKFTESEAFFNETKLKFPTL-----PEVPT 382
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK----------------LK 137
+ + A+ +Y A + + K +
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ A++ A ++DP +A + QM A+E + +A L
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502
Score = 84.0 bits (208), Expect = 3e-18
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 16/138 (11%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
Y L +Q K ++ +++ + P A ++ A++ I
Sbjct: 344 VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403
Query: 149 AIKIDPHYAKAYGRMGLAYTQ----------------MNDYKAALEAYTKAAELDPNDPL 192
A +++ K + +G + + AA++ TKA ELDP
Sbjct: 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ 463
Query: 193 YANNMQAAMSNLNNSSSA 210
+ + A
Sbjct: 464 AKIGLAQLKLQMEKIDEA 481
Score = 63.6 bits (155), Expect = 2e-11
Identities = 10/102 (9%), Positives = 31/102 (30%), Gaps = 2/102 (1%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ + T + ++K A+ +KA + D + A +++ A+ +
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
+ + + + + + L A +
Sbjct: 487 DSAILARTMDEKL--QATTFAEAAKIQKRLRADPIISAKMEL 526
Score = 54.7 bits (132), Expect = 1e-08
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 138 NYKLALRDCQIAIKIDPH----YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
++ D + P YA G + ++ A++ Y A ELDPN+P++
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 194 ANNMQAAMSNLNNSSSA 210
+N+ A + +
Sbjct: 62 YSNISACYISTGDLEKV 78
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 99.3 bits (248), Expect = 2e-24
Identities = 24/118 (20%), Positives = 48/118 (40%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ ++ G M++ + A+ +Y A+D D + Y + N+ LA++ +
Sbjct: 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
I+ K + +G AY +Y A ++ K EL PN + A + +
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP 191
Score = 94.6 bits (236), Expect = 6e-23
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 3/123 (2%)
Query: 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
+ + + + + +A+ ++K ++P Y RA +L Y LA +D
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 147 QI---AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
+ + + + G + A++ Y A + D + + N
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120
Query: 204 LNN 206
N
Sbjct: 121 KGN 123
Score = 90.8 bits (226), Expect = 2e-21
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 3/121 (2%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVI---EYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRD 145
Y + K + A Y ++ + + K LA++
Sbjct: 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ 96
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
Q A+ D YG++G + ++ A++ K DP + A
Sbjct: 97 YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156
Query: 206 N 206
Sbjct: 157 E 157
Score = 86.9 bits (216), Expect = 4e-20
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 3/111 (2%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ Y +G+ + A+ K I ++P + + K Y A
Sbjct: 108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167
Query: 149 AIKIDPHYAKAYGRMGLAYTQMND---YKAALEAYTKAAELDPNDPLYANN 196
+++ P+ Y A + A Y K E+ +
Sbjct: 168 VLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218
Score = 84.6 bits (210), Expect = 3e-19
Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 19/184 (10%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
A++ A D +D + + +Q+ I + T+ + +
Sbjct: 93 AIQQYQAAVDRDTTRLDMYGQIGS-YFYNKGNFPLAIQYMEKQIRPTTTD-----PKVFY 146
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN---YKLALRDCQIAI 150
LG + +A + K ++ + + Y RA +N LA + I
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
Query: 151 KIDP--------HYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202
++ +A + YT D A A+ LDP + + ++ +
Sbjct: 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266
Query: 203 NLNN 206
+ ++
Sbjct: 267 HHHH 270
Score = 66.1 bits (162), Expect = 9e-13
Identities = 15/92 (16%), Positives = 21/92 (22%), Gaps = 3/92 (3%)
Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAAL---E 178
N A K NY A+ + Y R + Y ++ Y A E
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
Y + S A
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93
Score = 60.0 bits (146), Expect = 1e-10
Identities = 14/96 (14%), Positives = 24/96 (25%), Gaps = 11/96 (11%)
Query: 89 AEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLK 137
Y QD K A Y K I+ A +
Sbjct: 176 YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINR 235
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDY 173
+ A + + +DP KA + + + +
Sbjct: 236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 94.8 bits (236), Expect = 3e-24
Identities = 21/113 (18%), Positives = 36/113 (31%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
E+ LG Q K + A + D+ + Y+ A L Y+ AL+
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
+D + + + Q+ D A + A L P + A
Sbjct: 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129
Score = 66.7 bits (163), Expect = 8e-14
Identities = 15/99 (15%), Positives = 35/99 (35%)
Query: 112 YSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171
+ + + + A + Q +D + A+ + +G +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
Y+ AL++Y+ A +D N+P + + L + A
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGA 105
Score = 29.7 bits (67), Expect = 0.59
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK 137
+ +Q + A + A + P + A + L+
Sbjct: 86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 99.2 bits (248), Expect = 9e-24
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 8/176 (4%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
++ A+E A + PD ID N+ +L + +Q Y + + ++P
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAA-ALVAAGDMEGAVQAYVSALQYNPDL-----YC 136
Query: 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
+LGN + E+A Y KAI+ + V + N N LA+ + A+
Sbjct: 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196
Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+DP++ AY +G + + A+ AY +A L PN + N+
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252
Score = 98.0 bits (245), Expect = 2e-23
Identities = 27/122 (22%), Positives = 49/122 (40%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE Y NLGN ++ + ++A+ Y A+ Y N AA+ + + A++
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A++ +P +G + + A Y KA E PN + +N+ +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 209 SA 210
A
Sbjct: 187 LA 188
Score = 97.6 bits (244), Expect = 3e-23
Identities = 27/122 (22%), Positives = 52/122 (42%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + NLG Q + A+ + KA+ D + Y N + + + A+
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A+ + P++A +G + Y + A++ Y +A EL P+ P N+ A+ + +
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 209 SA 210
A
Sbjct: 289 EA 290
Score = 97.6 bits (244), Expect = 3e-23
Identities = 29/118 (24%), Positives = 48/118 (40%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ Y NLGN + ++AV Y +A+ ++ V + N A + LA+ +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
AI++ PH+ AY + A + A + Y A L P NN+ N
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN 320
Score = 97.2 bits (243), Expect = 4e-23
Identities = 24/118 (20%), Positives = 48/118 (40%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + NL +Q + A+ Y +AI+ P YCN A + + + A
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
A+++ P +A + + + + + A+ Y KA E+ P +N+ + +
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354
Score = 96.5 bits (241), Expect = 6e-23
Identities = 24/118 (20%), Positives = 49/118 (41%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ Y NL N ++ +A Y+ A+ ++ N A + N + A+R +
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
A+++ P +A A+ + Q + AL Y +A + P +NM + + +
Sbjct: 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 91.1 bits (227), Expect = 7e-21
Identities = 24/119 (20%), Positives = 44/119 (36%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
L + Q E A + + N ++ + + + + +AIK
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+P A+AY +G Y + + A+E Y A L P+ N+ AA+ + A
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 96.0 bits (240), Expect = 1e-23
Identities = 20/118 (16%), Positives = 48/118 (40%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ + LG ++ ++P+ A+ +A++ + ++ AL
Sbjct: 125 GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ DP +A A+ G+ Y + + ALE KA ++ P+ L + + + ++
Sbjct: 185 VTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 94.5 bits (236), Expect = 4e-23
Identities = 26/118 (22%), Positives = 45/118 (38%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A Y N N ++ E+A+ Y KA++ D+S Y + YK A +
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
A++ + +G ++ K AL +A EL+ ND ++N
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGM 174
Score = 93.3 bits (233), Expect = 1e-22
Identities = 25/118 (21%), Positives = 44/118 (37%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A Y GN + ++ ++A + KA+ N + KL+ KLAL Q
Sbjct: 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
A++++ + +A + G+ AL + E DP N + N
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208
Score = 91.8 bits (229), Expect = 4e-22
Identities = 23/122 (18%), Positives = 44/122 (36%)
Query: 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR 144
+ + + E+A ++KAI+ + + + Y N A + + + AL
Sbjct: 19 SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALA 78
Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
A+++D A AY G Y YK A + + KA + + + L
Sbjct: 79 FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL 138
Query: 205 NN 206
Sbjct: 139 EQ 140
Score = 76.0 bits (188), Expect = 2e-16
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 106 EQAVIEYSKAIDCDNS----NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161
+ + + + + ++ +Y+ A AI+ + A Y
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ +N+ + AL Y KA ELD +
Sbjct: 62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106
Score = 70.6 bits (174), Expect = 2e-14
Identities = 14/85 (16%), Positives = 30/85 (35%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
E G + ++A+ +++ + D + + N + +N + AL
Sbjct: 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDY 173
AI I P + A L + +
Sbjct: 219 AIDIQPDHMLALHAKKLLGHHHHHH 243
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 99.5 bits (248), Expect = 2e-23
Identities = 32/197 (16%), Positives = 63/197 (31%), Gaps = 12/197 (6%)
Query: 18 KELLRDTLNAESKEGIEVAVECLCKA-YDIPDNIDPASNVDIESLFQLYYKDEVLQWYSN 76
+ L LN S E E + + + D ++LF +VL +
Sbjct: 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK-ADTLFVRSRFIDVLAITTK 330
Query: 77 INFSPTEEVKIE---AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASN 133
I ++I+ + Y + + + + + + +D V +
Sbjct: 331 I-------LEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383
Query: 134 NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
+ A R + +DP + A+ ++ ++ A+ AYT AA L L
Sbjct: 384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443
Query: 194 ANNMQAAMSNLNNSSSA 210
+ L N A
Sbjct: 444 YLFLGMQHMQLGNILLA 460
Score = 91.8 bits (228), Expect = 8e-21
Identities = 32/177 (18%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
+ K +I P N+D + + SL + K+++ ++ ++ P + A +
Sbjct: 324 VLAITTKILEIDPYNLD-VYPLHLASLHESGEKNKLYLISNDLVDRHPEK-----AVTWL 377
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
+G + +K +A +SK+ D + A S + A+ A ++
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
Y +G+ + Q+ + A E + L DPL N + N ++ +A
Sbjct: 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494
Score = 88.7 bits (220), Expect = 8e-20
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-------YCNRAASNNKLKNYKLALR 144
LG A + + A+ + A+ + N + KLK Y A+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
+ + + A + + L Y A+ ++ + PN+ + ++ ++ A+
Sbjct: 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594
Score = 86.4 bits (214), Expect = 4e-19
Identities = 18/116 (15%), Positives = 39/116 (33%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ ++ + + +QA+ Y+ A + Y + +L N LA Q
Sbjct: 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
+ + + +G+ +D + A+ + A L A +NL
Sbjct: 467 SYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522
Score = 83.7 bits (207), Expect = 4e-18
Identities = 22/180 (12%), Positives = 54/180 (30%), Gaps = 7/180 (3%)
Query: 34 EVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYK 93
+ A EC +A +D + L + +W + + + K +A +
Sbjct: 217 DRAKECYKEAL----MVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272
Query: 94 NLGNTAM---QQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
+L + + + +Y +I+ + +A + + L +
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332
Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+IDP+ Y + + + + P + + +N S A
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392
Score = 80.7 bits (199), Expect = 5e-17
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 7/129 (5%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
Y LG MQ A + +P+ + + A+ Q
Sbjct: 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500
Query: 149 AIKI-------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
A+ + + +A + +G AY ++ Y AA++A + L ND +
Sbjct: 501 ALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY 560
Query: 202 SNLNNSSSA 210
+ A
Sbjct: 561 LHKKIPGLA 569
Score = 68.7 bits (168), Expect = 4e-13
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 5/139 (3%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN---INFSPTEEVKIE 88
I +A E L +Y + + + + + F + + N + K
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGV-VAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + NLG+ + + A+ ++ + ++ + A K LA+
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575
Query: 149 AIKIDPHYAKAYGRMGLAY 167
++ I P+ A + A
Sbjct: 576 SLAISPNEIMASDLLKRAL 594
Score = 64.1 bits (156), Expect = 1e-11
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 3/126 (2%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIE---YSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRD 145
E + L + + E ++ YS D + + ++ D
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
+I + + + L TK E+DP + A++
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG 353
Query: 206 NSSSAS 211
+
Sbjct: 354 EKNKLY 359
Score = 38.3 bits (89), Expect = 0.003
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 2/128 (1%)
Query: 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA 149
+ + + A+ Q + + A K +D NP A +Y A
Sbjct: 85 DYLRLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCCTGDYARAKCLLTKE 143
Query: 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSS 209
+ A Y ++ D++ AL + ++ + +S
Sbjct: 144 DLYNRSSACRYLA-AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202
Query: 210 ASGSGGVF 217
G V+
Sbjct: 203 CYLRGQVY 210
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 92.5 bits (231), Expect = 7e-23
Identities = 23/118 (19%), Positives = 43/118 (36%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
Y++ G + + + QAV+ + D D + + + K +
Sbjct: 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
++ P K +GL Y Q+ Y A+ K AE +P + + A+ NL
Sbjct: 68 SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125
Score = 89.4 bits (223), Expect = 9e-22
Identities = 15/118 (12%), Positives = 43/118 (36%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ +LG ++ ++ +++ N + +++ Y LA+
Sbjct: 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK 101
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ +P R+G+A + + A++++ A L PN+ + + +
Sbjct: 102 VAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGR 159
Score = 86.4 bits (215), Expect = 1e-20
Identities = 25/102 (24%), Positives = 44/102 (43%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ LG T +Q K + AV K + + N + + L + A+ +I
Sbjct: 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
A+ + P+ K + + +Y QM ++ AL + KA ELD
Sbjct: 136 ALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177
Score = 74.0 bits (183), Expect = 5e-16
Identities = 15/88 (17%), Positives = 30/88 (34%)
Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
D+ VYY ++ S+ K Y A+ + D +G+AY + E
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 179 AYTKAAELDPNDPLYANNMQAAMSNLNN 206
++ P++ A + +
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQK 91
Score = 57.1 bits (139), Expect = 5e-10
Identities = 10/73 (13%), Positives = 26/73 (35%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
LG + ++A+ + A+ + + A S ++ ++ AL +
Sbjct: 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169
Query: 149 AIKIDPHYAKAYG 161
A ++D +
Sbjct: 170 ANELDEGASVELA 182
Score = 48.2 bits (116), Expect = 5e-07
Identities = 9/57 (15%), Positives = 19/57 (33%)
Query: 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ D Y G+++ + Y A+ + + D D A ++ A
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGA 57
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 94.3 bits (234), Expect = 3e-22
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 24/165 (14%)
Query: 44 YDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQD 103
++P D V++ + EE A++ K GN+ +++
Sbjct: 141 PNVPPMADLLYEVEVIGFDETKEGKARSDM-------TVEERIGAADRRKMDGNSLFKEE 193
Query: 104 KPEQAVIEYSKAIDCDNSNPVY-----------------YCNRAASNNKLKNYKLALRDC 146
K E+A+ +Y AI + ++ + N AA KLK Y A+ C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
I + + KA R G A ++ +A + + KA + P+D
Sbjct: 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 92.8 bits (231), Expect = 4e-22
Identities = 23/117 (19%), Positives = 41/117 (35%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A+ G A ++S+A+ P + + N+ A
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
+++DP Y A+ G+A K A + + DPNDP + + A L+
Sbjct: 103 VLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD 159
Score = 87.7 bits (218), Expect = 3e-20
Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 4/127 (3%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAI-DCDNSNPVY---YCNRAASNNKLKNYKLAL 143
K + L + E + + + ++ R + L LA
Sbjct: 4 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63
Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
D A+ I P + + +G+ TQ ++ AA EA+ ELDP N A+
Sbjct: 64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123
Query: 204 LNNSSSA 210
A
Sbjct: 124 GGRDKLA 130
Score = 80.4 bits (199), Expect = 1e-17
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 1/118 (0%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
E + LG Q + A + ++ D + + NR + KLA D
Sbjct: 77 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ DP+ + LA ++ D K A E + E + N ++ + N++
Sbjct: 137 FYQDDPNDPFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISE 193
Score = 78.1 bits (193), Expect = 7e-17
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 4/121 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKN---YKLALRD 145
+ L A Q+ +QA + + + + + + D
Sbjct: 145 PFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKAD 203
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
+ H ++ +G Y + D +A + A + ++ + +S L
Sbjct: 204 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLG 263
Query: 206 N 206
Sbjct: 264 Q 264
Score = 72.3 bits (178), Expect = 8e-15
Identities = 19/151 (12%), Positives = 45/151 (29%), Gaps = 4/151 (2%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEK 91
++A + L Y P++ + + + + +L K + S E+
Sbjct: 127 DKLAQDDLLAFYQDDPNDPFRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIV 184
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
LGN +Q E+ + + L + A ++A+
Sbjct: 185 EFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTK 182
+ H + L + + + L +
Sbjct: 244 NNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
Score = 65.8 bits (161), Expect = 1e-12
Identities = 13/125 (10%), Positives = 33/125 (26%), Gaps = 4/125 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ N G + + A + D ++P + KL + A +
Sbjct: 111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQ 169
Query: 149 AIKIDPHYAKAYGRMGLAYTQMND---YKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
+ + + +++ + T L + + +L
Sbjct: 170 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLG 229
Query: 206 NSSSA 210
+ SA
Sbjct: 230 DLDSA 234
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 88.2 bits (220), Expect = 5e-22
Identities = 40/116 (34%), Positives = 63/116 (54%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ D +N + N + K +Y A+ Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
A+++DP+ A+A+ +G AY + DY A+E Y KA ELDPN+ N+ A
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124
Score = 66.6 bits (164), Expect = 5e-14
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 115 AIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK 174
A+D NS +Y N + K +Y A+ Q A+++DP+ A+A+ +G AY + DY
Sbjct: 2 AMDPGNSAEAWY-NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 60
Query: 175 AALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
A+E Y KA ELDPN+ N+ A +
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYKQGD 92
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 87.5 bits (218), Expect = 7e-22
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 2/107 (1%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
E+Y G +++ + KAI D Y+ + + L+ Y+ A+
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65
Query: 149 AIKI--DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
I + D + + A + + E A+L+ + +
Sbjct: 66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHHH 112
Score = 70.2 bits (173), Expect = 2e-15
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
+ NP Y NY ++ + AI++DP +K + G A + Y+ A++
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 179 AYTKAAELDPNDPLYA---NNMQAAMSNLNN 206
Y + D A+ +
Sbjct: 62 CYNYVINVIE-DEYNKDVWAAKADALRYIEG 91
Score = 52.1 bits (126), Expect = 7e-09
Identities = 12/54 (22%), Positives = 23/54 (42%)
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
+ + Y G+ +Y +++ + KA +LDP + Y A+ NL
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE 54
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 87.8 bits (219), Expect = 1e-21
Identities = 38/118 (32%), Positives = 60/118 (50%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ D + + N + K +Y A+ Q
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
A+++DP A+A+ +G AY + DY A+E Y KA ELDP N+ A +
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118
Score = 85.5 bits (213), Expect = 7e-21
Identities = 36/101 (35%), Positives = 56/101 (55%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ D + + N + K +Y A+ Q
Sbjct: 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 94
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
A+++DP A+A+ +G AY + DY A+E Y KA ELDP
Sbjct: 95 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 92.4 bits (230), Expect = 1e-21
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 9/131 (6%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------DNSNPVY---YCNRAASNNKLKNY 139
+G A Q + + A + A++ + + + N KLK Y
Sbjct: 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 140 KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
AL + A+ + P A Y +G ++ M +++ A++ + A L +D +
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 200 AMSNLNNSSSA 210
+ S A
Sbjct: 313 CIEMYIGDSEA 323
Score = 85.8 bits (213), Expect = 2e-19
Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 9/178 (5%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
+ + P + V I +L +L +E+ ++ P+ +
Sbjct: 41 CYKLTSVVMEKDPFHAS-CLPVHIGTLVELNKANELFYLSHKLVDLYPSN-----PVSWF 94
Query: 94 NLGNT-AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
+G M K E A SKA + + + S + A+ A ++
Sbjct: 95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+GL Y N+ K A +++A + P DP + + +A
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA 212
Score = 82.3 bits (204), Expect = 4e-18
Identities = 19/108 (17%), Positives = 34/108 (31%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ G++ + + +QA+ Y A + N KLA R
Sbjct: 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
A+ I P +G+ Q ++K A + + A E
Sbjct: 185 ALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTV 232
Score = 78.5 bits (194), Expect = 8e-17
Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 7/151 (4%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYS-----NINFSPTEEVKIEA 89
A +A I P++ V + FQ +W+ V
Sbjct: 178 AERFFSQALSIAPEDPFVMHEVGV-VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236
Query: 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA 149
NLG+ + K +A+ + +A+ N Y ++ + N++ A+ A
Sbjct: 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296
Query: 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
+ + + +G A
Sbjct: 297 LGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
Score = 66.5 bits (163), Expect = 1e-12
Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 1/104 (0%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ +L + S ++ D + + +L
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHK 81
Query: 149 AIKIDPHYAKAYGRMGLAY-TQMNDYKAALEAYTKAAELDPNDP 191
+ + P ++ +G Y + + A +KA L+
Sbjct: 82 LVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG 125
Score = 64.2 bits (157), Expect = 7e-12
Identities = 12/101 (11%), Positives = 36/101 (35%)
Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
+ + +++D N + A + ++K+ + + ++ DP +A
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
++N K +L P++P+ + + +
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105
Score = 41.9 bits (99), Expect = 2e-04
Identities = 7/63 (11%), Positives = 17/63 (26%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
++ + + D+K + + E DP + LN ++
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 209 SAS 211
Sbjct: 74 ELF 76
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 94.5 bits (234), Expect = 1e-21
Identities = 35/122 (28%), Positives = 58/122 (47%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A+ NL N +Q E+AV Y KA++ + N A+ + + AL +
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
AI+I P +A AY MG +M D + AL+ YT+A +++P +N+ + + N
Sbjct: 69 AIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128
Query: 209 SA 210
A
Sbjct: 129 EA 130
Score = 86.4 bits (213), Expect = 6e-19
Identities = 26/104 (25%), Positives = 52/104 (50%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
NL + QQ K ++A++ Y +AI + Y N + ++++ + AL+ AI+I+
Sbjct: 48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
P +A A+ + + + A+ +Y A +L P+ P N+
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151
Score = 82.6 bits (203), Expect = 1e-17
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 9/183 (4%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
IE AV KA ++ P+ SN+ L Q E L Y I SPT A+
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTF-----AD 78
Query: 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
Y N+GNT + + A+ Y++AI + + + N A+ + N A+ + A+
Sbjct: 79 AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
K+ P + AY + + D+ E K + D L N + + + +
Sbjct: 139 KLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA-DQLEKNRLPSVHPHHSMLYPL 197
Query: 211 SGS 213
S
Sbjct: 198 SHG 200
Score = 65.6 bits (159), Expect = 4e-12
Identities = 18/89 (20%), Positives = 36/89 (40%)
Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
+ N A + N + A+R + A+++ P +A A+ + Q + AL Y
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 182 KAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+A + P +NM + + + A
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGA 96
Score = 48.7 bits (115), Expect = 1e-06
Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 8/152 (5%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
A+ +A I P D SN+ +L ++ LQ Y+ I +P A+ +
Sbjct: 62 ALMHYKEAIRISPTFADAYSNM-GNTLKEMQDVQGALQCYTRAIQINPAF-----ADAHS 115
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
NL + +A+ Y A+ P YCN A + ++ + + I
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
+ + Y + AE
Sbjct: 176 ADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAE 207
Score = 48.7 bits (115), Expect = 1e-06
Identities = 10/58 (17%), Positives = 22/58 (37%)
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
P +A + + + + + A+ Y KA E+ P +N+ + + A
Sbjct: 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 62
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 86.4 bits (214), Expect = 5e-21
Identities = 13/107 (12%), Positives = 32/107 (29%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ + + + E+A + + D N Y AA + ++ A
Sbjct: 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYA 94
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
+A + + G ++ A E + + ++ L
Sbjct: 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKI 141
Score = 60.6 bits (147), Expect = 1e-11
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 6/124 (4%)
Query: 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
E E A+ + + D + +Y + A + A
Sbjct: 6 TENESISTAVIDAINSGATLKDINAIPD----DMMDDIY--SYAYDFYNKGRIEEAEVFF 59
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ D + + Y ++ A + Y A L ND + L
Sbjct: 60 RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119
Query: 207 SSSA 210
A
Sbjct: 120 PLKA 123
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 90.9 bits (226), Expect = 6e-21
Identities = 35/224 (15%), Positives = 73/224 (32%), Gaps = 12/224 (5%)
Query: 34 EVAVECLCKAYDIPDNIDPA----SNVDIESLFQLYYKDEVLQWY-SNINFSPTEEVKIE 88
E A + + D + + + S Q + F K +
Sbjct: 6 ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFK-D 64
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
G +++ ++ AI D + + + + +N + A+ Q
Sbjct: 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
+++ P+ KA + ++YT + + A EA + +P N + + S
Sbjct: 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184
Query: 209 SASGSGGVFPGLSEMSTKVLS------DPSIQQVFGELFANPGQ 246
+ V G+ E+ + DP +Q G LF G+
Sbjct: 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228
Score = 84.3 bits (209), Expect = 1e-18
Identities = 25/179 (13%), Positives = 56/179 (31%), Gaps = 14/179 (7%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDI---------ESLFQLYYKDEVLQWYSN-INFSPTEE 84
A E L P N +S + V + Y + +
Sbjct: 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM- 210
Query: 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR 144
I+ + LG + +A+ ++ A+ + + A+ + A+
Sbjct: 211 --IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE 268
Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
A++I P + ++ +G++ + Y+ A+ + A L A+S
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327
Score = 77.4 bits (191), Expect = 2e-16
Identities = 21/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC------------DNSNPVYYCNRAASNNKL 136
KN + + ++ ++ S D +P +
Sbjct: 167 KYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
+ A+ A+ + P + R+G + + A+EAYT+A E+ P N
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286
Query: 197 MQAAMSNLNN 206
+ + NL
Sbjct: 287 LGISCINLGA 296
Score = 75.1 bits (185), Expect = 2e-15
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 12/134 (8%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ L + + A I + N+ S + + D +
Sbjct: 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192
Query: 149 AIKIDPHYAKA------------YGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
+ Y +A +G+ + ++ A++A+ A + P D N
Sbjct: 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNR 252
Query: 197 MQAAMSNLNNSSSA 210
+ A ++N + S A
Sbjct: 253 LGATLANGDRSEEA 266
Score = 59.3 bits (144), Expect = 3e-10
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 19/119 (15%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ LG T D+ E+AV Y++A++ N S L Y+ A+ +
Sbjct: 247 YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306
Query: 149 AIKIDPHYAKAYG--------------RMGLAYTQMNDYKAA-----LEAYTKAAELDP 188
A+ + R+ L+ + A L+ +A LDP
Sbjct: 307 ALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP 365
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 91.4 bits (227), Expect = 9e-21
Identities = 18/122 (14%), Positives = 36/122 (29%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ L + + + + + +P + + A Q
Sbjct: 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A P + +G A +AA AYT+A +L P +P + L +
Sbjct: 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142
Query: 209 SA 210
+
Sbjct: 143 AL 144
Score = 70.3 bits (172), Expect = 1e-13
Identities = 13/93 (13%), Positives = 33/93 (35%)
Query: 105 PEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMG 164
+ +++ A+ + V + A + + + Q + + P + +A R+G
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 165 LAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ A +A++ P P A +
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWL 97
Score = 57.2 bits (138), Expect = 2e-09
Identities = 12/69 (17%), Positives = 20/69 (28%)
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ L + A++ P A+ + A M D A A + L P P +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 198 QAAMSNLNN 206
Sbjct: 64 GRVRWTQQR 72
Score = 57.2 bits (138), Expect = 3e-09
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 1/114 (0%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
E LG Q + +A + +A D +P + + A
Sbjct: 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202
A ++ P ++ ++ D++ AL+ + + A A +S
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWR-ALDVLSAQVRAAVAQGVGAVEPFAFLS 169
Score = 33.3 bits (76), Expect = 0.10
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
D L A P D + + A + ++++
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAG 42
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 86.7 bits (215), Expect = 2e-20
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
EA N G A + + A+ +S D + N LKN A +
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFT 61
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA-AELDPNDPLYANNM 197
+I D H A AY + G+ Y Q Y A++ +A +L N + +
Sbjct: 62 RSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112
Score = 81.3 bits (201), Expect = 2e-18
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 18/137 (13%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ N+G +A ++++I+ D V Y R + + Y LA++D +
Sbjct: 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKE 96
Query: 149 AIK-IDPHYAKAYGR---------------MGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
A+ + + Y + Y + ++K A E A +
Sbjct: 97 ALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156
Query: 193 YANNMQAAMSNLNNSSS 209
+ + AM +
Sbjct: 157 --SKIDKAMECVWKQKL 171
Score = 62.8 bits (153), Expect = 7e-12
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ N K++K AL + +++ +G YT + + A +A+T++
Sbjct: 7 ISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS 63
Query: 184 AELDPNDPLYANNMQAAMSNLNNSSSA 210
D + + A
Sbjct: 64 INRDKHLAVAYFQRGMLYYQTEKYDLA 90
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 89.4 bits (222), Expect = 2e-20
Identities = 30/142 (21%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 75 SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAI--------DCDNSNPVY- 125
++++ +++ + +E KN+GNT + E A+ +Y+K + ++++
Sbjct: 209 ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL 268
Query: 126 -------YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
N A K+ +++ A+ C A++IDP KA R + + +Y AL
Sbjct: 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328
Query: 179 AYTKAAELDPNDPLYANNMQAA 200
KA E+ P D +
Sbjct: 329 DLKKAQEIAPEDKAIQAELLKV 350
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 85.0 bits (210), Expect = 2e-20
Identities = 20/118 (16%), Positives = 33/118 (27%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
E+ +L Q E A + D+ + ++ A + Y LA+
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
+D + Q + A A EL N P + S L
Sbjct: 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137
Score = 58.8 bits (142), Expect = 6e-11
Identities = 14/105 (13%), Positives = 36/105 (34%)
Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
+ + + + A + + Y+ A Q +D + ++ + +G
Sbjct: 4 GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63
Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
M Y A+ +Y+ A +D +P + + + + A
Sbjct: 64 CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 90.2 bits (224), Expect = 2e-20
Identities = 19/176 (10%), Positives = 47/176 (26%), Gaps = 8/176 (4%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAE 90
++ + LC+A+ + P + ++ L +L +P +
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTPQQ-----VV 345
Query: 91 KYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
+ + ++ + +A V + L+ + L A
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405
Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ P A + + L +A L P + + L +
Sbjct: 406 GLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461
Score = 89.4 bits (222), Expect = 5e-20
Identities = 19/179 (10%), Positives = 45/179 (25%), Gaps = 8/179 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + P + ++ L +L +P +
Sbjct: 225 QRLLPVLCQAHGLTPQQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTPQQ-----VVA 278
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ + ++ + +A V + L+ + L A
Sbjct: 279 IASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 338
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ P A + + L +A L P + + L
Sbjct: 339 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL 397
Score = 89.0 bits (221), Expect = 5e-20
Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 8/173 (4%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
+ LC+A+ + P+ + ++ D L +L +P +
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDG-GKQALETVQALLPVLCQAHGLTPEQ-----VVAIA 178
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
+ G + ++ + +A V + L+ + L A +
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
P A G + + L +A L P + + L
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALET 291
Score = 89.0 bits (221), Expect = 6e-20
Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 8/182 (4%)
Query: 31 EGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIE 88
E ++ + LC+A+ + P + A + L +L +P +
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVV-AIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----- 241
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ G + ++ + +A V + + L+ + L
Sbjct: 242 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ 301
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A + P A G + + L +A L P + + L
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 209 SA 210
Sbjct: 362 RL 363
Score = 88.3 bits (219), Expect = 1e-19
Identities = 24/163 (14%), Positives = 46/163 (28%), Gaps = 8/163 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + P + ++ D L +L +P +
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPEQ-----VVA 380
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ G + ++ + +A V + L+ + L A
Sbjct: 381 IASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 440
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
+ P A G + A L A ND L A
Sbjct: 441 LTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVA 483
Score = 87.1 bits (216), Expect = 3e-19
Identities = 21/177 (11%), Positives = 46/177 (25%), Gaps = 8/177 (4%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
+ LC+A+ + P + ++ L +L +P +
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSG-GKQALETVQRLLPVLCQAHGLTPQQ-----VVAIA 314
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
+ G + ++ + +A V + L+ + L A +
Sbjct: 315 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 374
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
P A G + + L +A L P + + L
Sbjct: 375 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRL 431
Score = 86.3 bits (214), Expect = 4e-19
Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 8/179 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + P + ++ D L +L +P +
Sbjct: 89 QRLLPVLCQAHGLTPQQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPEQ-----VVA 142
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ + + + +A V + L+ + L A
Sbjct: 143 IASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG 202
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ P A G + + L +A L P + + L
Sbjct: 203 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRL 261
Score = 81.7 bits (202), Expect = 1e-17
Identities = 21/188 (11%), Positives = 48/188 (25%), Gaps = 9/188 (4%)
Query: 26 NAESKEGI-EVAVECLCKAYDI-PDNIDPASNVDIESLFQ-LYYKDEVLQWYSNINFSPT 82
A + E + VA E + + + + + ++ L +N +P
Sbjct: 12 GARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP-LNLTPE 70
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
+ + + ++ + +A V + L+ +
Sbjct: 71 Q-----VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 125
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMS 202
L A + P A + +A L +A L P + +
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185
Query: 203 NLNNSSSA 210
L
Sbjct: 186 ALETVQRL 193
Score = 64.4 bits (157), Expect = 8e-12
Identities = 12/124 (9%), Positives = 26/124 (20%), Gaps = 4/124 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK--LKNYKLALRDC 146
+ + A + D + R + ++ AL
Sbjct: 4 HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTG- 62
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNN 206
+ + P A + + L +A L P + + L
Sbjct: 63 -APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 121
Query: 207 SSSA 210
Sbjct: 122 VQRL 125
Score = 27.0 bits (60), Expect = 8.9
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + P+ + ++ D L +L +P +
Sbjct: 395 QRLLPVLCQAHGLTPEQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPQQ-----VVA 448
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK 140
+ G + + A+ ++ + L K
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRPALDAVK 497
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 86.3 bits (214), Expect = 3e-20
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 1/129 (0%)
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
+ +I ++ L + ++A + Y + + +N A K A
Sbjct: 48 KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA 107
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAY-TQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
LR + ++++ A +G Y K LE K +
Sbjct: 108 LRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167
Query: 202 SNLNNSSSA 210
A
Sbjct: 168 LFTTRYEKA 176
Score = 80.2 bits (198), Expect = 4e-18
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 16/125 (12%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAI----------------DCDNSNPVYYCNRAAS 132
++ + A++ + QAV + + I + A +
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALA 63
Query: 133 NNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
K +NY A + ++ P+ K AL Y K +L+ ++
Sbjct: 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123
Query: 193 YANNM 197
+
Sbjct: 124 ANIFL 128
Score = 35.5 bits (82), Expect = 0.013
Identities = 3/36 (8%), Positives = 10/36 (27%)
Query: 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
+ A + A+ + + L+ +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRT 38
Score = 28.2 bits (63), Expect = 3.2
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 7/93 (7%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYK 93
A+ K + DN+ + + + L+ ++
Sbjct: 107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-----QYARY 161
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY 126
G + + + E+A K I S
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVILRFPSTEAQK 194
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 88.1 bits (219), Expect = 4e-20
Identities = 15/123 (12%), Positives = 42/123 (34%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
E G + ++ +A + + + + + + + LA+
Sbjct: 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A +DP + + +++T ++ AAL + P + A ++++ +
Sbjct: 81 ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLN 140
Query: 209 SAS 211
S
Sbjct: 141 VQS 143
Score = 85.0 bits (211), Expect = 5e-19
Identities = 29/183 (15%), Positives = 71/183 (38%), Gaps = 13/183 (7%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-----------INFSPTE 83
A+ L A + P +I + + + S + + L + +
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAV-SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132
Query: 84 EVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLAL 143
+V I+ ++ ++ + A++ + ++ + + N NY A
Sbjct: 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAA 192
Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
+ + A+++ P A+ + ++G N + AL+AY +A +++P NM + SN
Sbjct: 193 ANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252
Query: 204 LNN 206
++
Sbjct: 253 MSQ 255
Score = 83.9 bits (208), Expect = 1e-18
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 15/133 (11%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
E +++LG T + +K A+I + A D + + A S+ N AL +
Sbjct: 55 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 114
Query: 149 AIKIDPHYAKAYGR---------------MGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
+ P Y + + N+Y+ A E++PND
Sbjct: 115 WLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL 174
Query: 194 ANNMQAAMSNLNN 206
++ + NN
Sbjct: 175 HASLGVLYNLSNN 187
Score = 81.6 bits (202), Expect = 9e-18
Identities = 18/115 (15%), Positives = 41/115 (35%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A+ + +LG + + A +A++ + + A+ + AL
Sbjct: 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
A+ I+P Y + M ++Y+ M+ Y A + +A + +
Sbjct: 232 ALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286
Score = 78.9 bits (195), Expect = 7e-17
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 15/137 (10%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCD---------------NSNPVYYCNRAASN 133
+ L + + A+ + + + + +
Sbjct: 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF 148
Query: 134 NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLY 193
Y+ A++++P+ A+ + +G+ Y N+Y +A +A EL P+D
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208
Query: 194 ANNMQAAMSNLNNSSSA 210
N + A ++N N A
Sbjct: 209 WNKLGATLANGNRPQEA 225
Score = 73.5 bits (181), Expect = 5e-15
Identities = 21/105 (20%), Positives = 37/105 (35%)
Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
Q +Y + S KL N A + + P +A+ +GL
Sbjct: 4 LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGL 63
Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ A+ A A LDP D + + +N +N+++A
Sbjct: 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 86.7 bits (214), Expect = 3e-19
Identities = 38/191 (19%), Positives = 68/191 (35%), Gaps = 37/191 (19%)
Query: 31 EGIEVAVECLCK------------AYD----IPDNIDPASNVDIESLFQLYYKDEVLQWY 74
GI+ A+E + + + I+P + + E + +
Sbjct: 200 IGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFE------KA 253
Query: 75 SNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-DNSNPVY-------- 125
T+E +A K G + K QAVI+Y K + + +
Sbjct: 254 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASE 313
Query: 126 ------YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179
+ N A KL+ Y A+ C A+ +D K R G A MN++++A
Sbjct: 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 373
Query: 180 YTKAAELDPND 190
+ K E++P +
Sbjct: 374 FEKVLEVNPQN 384
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 83.4 bits (207), Expect = 3e-19
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 11/133 (8%)
Query: 85 VKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALR 144
++ + LG + + A+ + +A+ + +P A + KL AL
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60
Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQM-----------NDYKAALEAYTKAAELDPNDPLY 193
+ + + P Y Y + AY + + AL A ++P
Sbjct: 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120
Query: 194 ANNMQAAMSNLNN 206
+ L
Sbjct: 121 HLQRGLVYALLGE 133
Score = 80.7 bits (200), Expect = 3e-18
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 1/101 (0%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A + G + ++A +A+ ++ P A + AL
Sbjct: 118 APLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAK 176
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
A++ P R A + A A +
Sbjct: 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 79.9 bits (198), Expect = 6e-18
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 12/133 (9%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRA-----------ASNNKLK 137
E L T ++ A+ + Y +
Sbjct: 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG 98
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ AL + A +++P YA + + GL Y + + A + +A L+ + + +
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR-SAL 157
Query: 198 QAAMSNLNNSSSA 210
++ A
Sbjct: 158 AELYLSMGRLDEA 170
Score = 75.3 bits (186), Expect = 3e-16
Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 12/129 (9%)
Query: 89 AEKYKNLGNT-----------AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK 137
Y L + EQA+ A + + R L
Sbjct: 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
A + A+ ++ + + Y M AL Y KA E P D
Sbjct: 133 ERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191
Query: 198 QAAMSNLNN 206
+A+
Sbjct: 192 ASALLLKGK 200
Score = 67.9 bits (167), Expect = 1e-13
Identities = 14/91 (15%), Positives = 24/91 (26%)
Query: 121 SNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAY 180
+ L Y AL + A+K +P +A + ++ ALE
Sbjct: 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62
Query: 181 TKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211
P + A L +
Sbjct: 63 KTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 85.1 bits (211), Expect = 6e-19
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 2/141 (1%)
Query: 66 YKDEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV 124
Y D Y F ++ + + G +Q+ AV+ + A+ D +
Sbjct: 41 YDDLTSATYDKGYQFEEENPLR-DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME 99
Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
+ + + + LA+ + +++ P A + +++T + + A E
Sbjct: 100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159
Query: 185 ELDPNDPLYANNMQAAMSNLN 205
P +
Sbjct: 160 RYTPAYAHLVTPAEEGAGGAG 180
Score = 83.9 bits (208), Expect = 1e-18
Identities = 23/146 (15%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
Query: 60 SLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC 118
SL EV + + + PT I+ + LG + ++AV ++ A+
Sbjct: 190 SLLSDSLFLEVKELFLAAVRLDPTS---IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV 246
Query: 119 DNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALE 178
++ + + A+ + A+ + A+++ P Y ++ +G++ + ++ A+E
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306
Query: 179 AYTKAAELDPNDPLYANNMQAAMSNL 204
+ +A + A N+
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSENI 332
Score = 78.9 bits (195), Expect = 8e-17
Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 15/185 (8%)
Query: 36 AVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYS-----NINFSPTEEVKIEA 89
A+ L + ++ PDN + + S + + + ++ E
Sbjct: 117 AISALRRCLELKPDNQTALMALAV-SFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175
Query: 90 EKYKNLGNT------AMQQDKPEQAVIEYSKAI--DCDNSNPVYYCNRAASNNKLKNYKL 141
LG + + + + A+ D + +P C N Y
Sbjct: 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235
Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAM 201
A+ A+ + P+ + ++G N + A+ AY +A EL P N+ +
Sbjct: 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC 295
Query: 202 SNLNN 206
NL
Sbjct: 296 INLGA 300
Score = 73.9 bits (182), Expect = 5e-15
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 5/127 (3%)
Query: 89 AEKYKNLGNT-AMQQDKPEQAVIEYSKAIDCDNSNPVY----YCNRAASNNKLKNYKLAL 143
E K D + Y K + NP+ + + A+
Sbjct: 25 EEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAV 84
Query: 144 RDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
+ A++ DP + +A+ +G + A+ A + EL P++ + + +N
Sbjct: 85 LLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144
Query: 204 LNNSSSA 210
+ A
Sbjct: 145 ESLQRQA 151
Score = 69.3 bits (170), Expect = 2e-13
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 17/139 (12%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAI---------------DCDNSNPVYYCNRAASN 133
L + + QA + + S
Sbjct: 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191
Query: 134 NKLKNYKLALRDCQIAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
+ A+++DP +G+ + +Y A++ +T A + PND
Sbjct: 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251
Query: 192 LYANNMQAAMSNLNNSSSA 210
L N + A ++N N S A
Sbjct: 252 LLWNKLGATLANGNQSEEA 270
Score = 63.5 bits (155), Expect = 1e-11
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 11/113 (9%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ LG T ++ E+AV Y +A++ N S L ++ A+
Sbjct: 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310
Query: 149 AIKIDPHYAKAYGR-----------MGLAYTQMNDYKAALEAYTKAAELDPND 190
A+ + G + LA + + A A +
Sbjct: 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTM 363
Score = 43.5 bits (103), Expect = 5e-05
Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 16/117 (13%)
Query: 110 IEYSKAIDCDNSNP------------VYYCNRAASNNKLKNYKLALRDCQIAIKIDPH-- 155
+E+ +A S+ + + A L + +
Sbjct: 1 MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENP 60
Query: 156 --YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
GL Q D A+ + A + DP + + A
Sbjct: 61 LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 78.5 bits (194), Expect = 2e-18
Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
+ + N + + + + + AL + A+ DP Y+ A+ +G
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 166 AYTQMNDYKAALEAYTKAAELDPN--DPLYANNMQAAMSNL 204
D A +A+ + D +Q + L
Sbjct: 62 TLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102
Score = 48.9 bits (117), Expect = 9e-08
Identities = 9/62 (14%), Positives = 19/62 (30%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
+ +G Y + + AAL A + DP + + + + +
Sbjct: 11 MLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70
Query: 209 SA 210
A
Sbjct: 71 GA 72
Score = 32.3 bits (74), Expect = 0.058
Identities = 4/37 (10%), Positives = 10/37 (27%)
Query: 174 KAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+A E ++ L + + +A
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAA 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 77.7 bits (192), Expect = 7e-17
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 4/125 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ Y LG +Q+ EQA + KA++ D S+ + A KLA + +
Sbjct: 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK 96
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA---NNMQAAMSNLN 205
A+ D A+ G + Y+ A + +A++ D P + N+ +
Sbjct: 97 ALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMK 155
Query: 206 NSSSA 210
+ A
Sbjct: 156 KPAQA 160
Score = 77.3 bits (191), Expect = 9e-17
Identities = 19/111 (17%), Positives = 38/111 (34%)
Query: 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
+ + + + ++ + K + Y + N + A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPL 60
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ A++IDP A A+ + + + + K A E Y KA D + NN
Sbjct: 61 RKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111
Score = 76.9 bits (190), Expect = 1e-16
Identities = 19/103 (18%), Positives = 36/103 (34%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ ++NLG ++Q KP QA + K++ + + P A K + Y A + +
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
+ A++ D A + L P
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243
Score = 74.6 bits (184), Expect = 9e-16
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 4/125 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALRD 145
A N G +Q + E+A +A D P + N + ++K A
Sbjct: 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEY 163
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
+ +++++ + M + +Y A + Y A+ +
Sbjct: 164 FEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223
Query: 206 NSSSA 210
+ +A
Sbjct: 224 DRDTA 228
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 79.7 bits (196), Expect = 1e-16
Identities = 13/122 (10%), Positives = 29/122 (23%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ + ++ + +A V + L+ + L
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQ 285
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A + P A G + + L +A L P+ + + L
Sbjct: 286 AHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQ 345
Query: 209 SA 210
Sbjct: 346 RL 347
Score = 77.0 bits (189), Expect = 8e-16
Identities = 20/179 (11%), Positives = 46/179 (25%), Gaps = 8/179 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + P + ++ D L +L P +
Sbjct: 209 QRLLPVLCQAHGLTPAQVVAIASHDG-GKQALETMQRLLPVLCQAHGLPPDQ-----VVA 262
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ + ++ + +A V + L+ + L A
Sbjct: 263 IASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG 322
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ P A + + L +A L P+ + + L
Sbjct: 323 LTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 381
Score = 77.0 bits (189), Expect = 1e-15
Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 8/169 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + PD + ++ L +L +P +
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIG-GKQALETVQRLLPVLCQAHGLTPDQ-----VVA 296
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ G + ++ + +A V + L+ + L A
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAA 200
+ P A G + + L +A L P+ + +
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK 405
Score = 73.9 bits (181), Expect = 8e-15
Identities = 19/173 (10%), Positives = 46/173 (26%), Gaps = 8/173 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + PD + ++ L +L + +
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTQVQ-----VVA 601
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ + ++ + +A + V + L+ + L A
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHG 661
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
+ P A G + + L +A L + + L
Sbjct: 662 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714
Score = 73.5 bits (180), Expect = 1e-14
Identities = 14/122 (11%), Positives = 28/122 (22%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ + +Q + +A V + L + L
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQ 522
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A + P A G + + L +A L P+ + + L
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582
Query: 209 SA 210
Sbjct: 583 RL 584
Score = 72.4 bits (177), Expect = 3e-14
Identities = 15/179 (8%), Positives = 44/179 (24%), Gaps = 6/179 (3%)
Query: 33 IEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEK 91
++ + LC+A+ + + ++ + + +P +
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ-----VVA 635
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ + ++ + +A V + L+ + L A
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ A + + L +A L P+ + + L
Sbjct: 696 LTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 754
Score = 70.8 bits (173), Expect = 1e-13
Identities = 19/179 (10%), Positives = 46/179 (25%), Gaps = 7/179 (3%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKY 92
+ + LC+A+ + PD + ++ D + + +P +
Sbjct: 311 QRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAI 365
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
+ G + ++ + +A V + L+ + L A +
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGL 424
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211
P A + + L + L P + + L
Sbjct: 425 TPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLL 483
Score = 68.9 bits (168), Expect = 4e-13
Identities = 12/122 (9%), Positives = 27/122 (22%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ G + ++ + +A V + L+ + L
Sbjct: 531 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSS 208
A + A + + L +A L P + + L
Sbjct: 591 AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQ 650
Query: 209 SA 210
Sbjct: 651 RL 652
Score = 68.5 bits (167), Expect = 6e-13
Identities = 13/119 (10%), Positives = 29/119 (24%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ G + ++ + +A V + L+ + L A
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ P A + + L +A L P+ + + L
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRL 686
Score = 66.6 bits (162), Expect = 3e-12
Identities = 24/173 (13%), Positives = 52/173 (30%), Gaps = 9/173 (5%)
Query: 31 EGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIE 88
E ++ + LC+A+ + P + ++ D L +L +P +
Sbjct: 613 ETVQRLLPVLCQAHGLTPAQVVAIASHDG-GKQALETVQRLLPVLCQAHGLTPDQ----- 666
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ G + ++ + +A V + L+ + L
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL-YANNMQAA 200
A + P A G + + L +A L P + A+N+
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGK 779
Score = 62.4 bits (151), Expect = 6e-11
Identities = 13/123 (10%), Positives = 28/123 (22%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ K G + ++ + V + L+ + L
Sbjct: 157 QLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLC 216
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
A + P A + + L +A L P+ + + L
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETV 276
Query: 208 SSA 210
Sbjct: 277 QRL 279
Score = 56.2 bits (135), Expect = 6e-09
Identities = 17/179 (9%), Positives = 43/179 (24%), Gaps = 8/179 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + PD + ++ L +L + +
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGG-GKQALETVQRLLPVLCQAHGLTQEQ-----VVA 703
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ + ++ + +A V + L+ + L A
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 763
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ P A + + L + L + + L
Sbjct: 764 LTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRL 822
Score = 50.8 bits (121), Expect = 3e-07
Identities = 11/105 (10%), Positives = 20/105 (19%)
Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGL 165
A + D V R + + + P A
Sbjct: 141 TDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNG 200
Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ + L +A L P + + L
Sbjct: 201 GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245
Score = 46.9 bits (111), Expect = 5e-06
Identities = 17/173 (9%), Positives = 45/173 (26%), Gaps = 8/173 (4%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSN-INFSPTEEVKIEAEK 91
+ + LC+A+ + + + A + L +L +P +
Sbjct: 684 QRLLPVLCQAHGLTQEQVV-AIASNNGGKQALETVQRLLPVLCQAHGLTPDQ-----VVA 737
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
+ G + ++ + +A + V + L+ + L
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHG 797
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
+ A + + L +A L + + + L
Sbjct: 798 LTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQAL 850
Score = 42.7 bits (100), Expect = 1e-04
Identities = 18/178 (10%), Positives = 47/178 (26%), Gaps = 13/178 (7%)
Query: 34 EVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKY 92
+ + LC+A+ + PD + ++ + + +P +
Sbjct: 718 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQ-----VVAI 772
Query: 93 KNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKI 152
+ + ++ + + + V + L+ + L A +
Sbjct: 773 ASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGL 832
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
A K ALE + + D + A+++ A
Sbjct: 833 TQDQVVAIASNIGG-------KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQA 883
Score = 27.7 bits (61), Expect = 7.0
Identities = 21/178 (11%), Positives = 48/178 (26%), Gaps = 21/178 (11%)
Query: 31 EGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEA 89
E ++ + LC+A+ + D + ++ + + + +P ++ A
Sbjct: 817 ETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPD---QVVA 873
Query: 90 EKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIA 149
G A++ + V+ + D + L+ + L
Sbjct: 874 IASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQ---ALETVQRLLPVLCQD 930
Query: 150 IKIDPHYAKAYGRMGLAYTQMNDYKAALEAY-------TKAAELDPNDPLYANNMQAA 200
+ P A ALE + L PN + +
Sbjct: 931 HGLTPDQVVAIASNSGGK-------QALETVQRLLPVLCQDHGLTPNQVVAIASNGGK 981
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 73.1 bits (180), Expect = 2e-15
Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 5/126 (3%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ L M+ QA A+ D N + + RA LK A +
Sbjct: 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67
Query: 149 AIKIDPHYAKAYGRMGLA-YTQMNDYKAALEAYTKAAELDPNDPLYA---NNMQAAMSNL 204
A+ I P A+ G ++N ++ + KA DP P N +
Sbjct: 68 ALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQ 126
Query: 205 NNSSSA 210
A
Sbjct: 127 GQFGLA 132
Score = 72.3 bits (178), Expect = 3e-15
Identities = 12/125 (9%), Positives = 29/125 (23%), Gaps = 3/125 (2%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAAS-NNKLKNYKLALRDCQ 147
+ ++A + +A+ + N +L ++
Sbjct: 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFD 101
Query: 148 IAIK--IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLN 205
A+ P A G+ + + A ++ P P +
Sbjct: 102 KALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161
Query: 206 NSSSA 210
A
Sbjct: 162 QLGDA 166
Score = 66.5 bits (163), Expect = 4e-13
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 89 AEKYKNLGNTAMQQ-DKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALR 144
AE N G + ++P +++ + KA+ D + P N+ + K + LA
Sbjct: 76 AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEA 134
Query: 145 DCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
+ ++ P + A+ + A + K
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181
Score = 65.0 bits (159), Expect = 1e-12
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 3/115 (2%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
N G + +Q + A +++ P + A + A +
Sbjct: 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSN 203
+ L + A AY A+L N P Y+ +Q ++
Sbjct: 173 YQSRVEVLQADD--LLLGWKIAKALGNAQAAYEYEAQLQANFP-YSEELQTVLTG 224
Score = 43.4 bits (103), Expect = 3e-05
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ ++ + Y + DY+ A + A + DP + L L + A
Sbjct: 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 75.4 bits (185), Expect = 2e-15
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 8/134 (5%)
Query: 78 NFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLK 137
++ T V+ K +++ Q++ E+ + + + + + + N
Sbjct: 63 SYFETHSVEDAGRKQQDV------QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP 116
Query: 138 NY-KLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANN 196
+Y A A+K++P +A+ ++G Y + D +A ++ A N N
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL-QN 175
Query: 197 MQAAMSNLNNSSSA 210
+ + L S
Sbjct: 176 LSMVLRQLQTDSGD 189
Score = 69.3 bits (169), Expect = 2e-13
Identities = 21/175 (12%), Positives = 53/175 (30%), Gaps = 18/175 (10%)
Query: 36 AVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNL 95
+ C +Y +++ A + ++ ++ LQ + ++EA+
Sbjct: 56 RLYCFRDSYFETHSVEDAGRKQQDVQEEM---EKTLQQMEEV----LGSAQVEAQALMLK 108
Query: 96 GNT-AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDP 154
G + D +A + SKA+ + + K + A A+
Sbjct: 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168
Query: 155 HYAKAYGRMGLAYTQM---------NDYKAALEAYTKAAELDPNDPLYANNMQAA 200
+ + + + Q+ ++ A ++D D + A
Sbjct: 169 NK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222
Score = 66.6 bits (162), Expect = 2e-12
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 89 AEKYKNLGNTAMQ--------QDKPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLK 137
+ LGN + +QA+ Y++A D + NRA + +
Sbjct: 213 GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE 272
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+Y AL A +DP + + R ++ + LE+ K
Sbjct: 273 SYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 74.2 bits (182), Expect = 6e-15
Identities = 41/232 (17%), Positives = 79/232 (34%), Gaps = 27/232 (11%)
Query: 6 EDIITSVITFLRKELLRDTLN-----AESKEGIEVAVECLCKAYDI-----PDNIDPASN 55
ED + F +E N K E A+ECL KA ++ D + S
Sbjct: 35 EDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSL 94
Query: 56 VDIESLFQLYYK----DEVLQWYSNIN----FSPTEEVKIEAEKYKNLGNTAMQ--QDKP 105
V + +YY +V + + + E G T ++ ++
Sbjct: 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQN 154
Query: 106 EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK---LALRDCQIAIKIDPHYAKAYGR 162
E+A + + KA++ NP + A ++ +L N+ A+ + AI+++P
Sbjct: 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214
Query: 163 MGLAYTQM----NDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ L +M + + +A E P + + A
Sbjct: 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKA 266
Score = 73.8 bits (181), Expect = 7e-15
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 7/116 (6%)
Query: 89 AEKYKNLGNTAMQQD---KPEQAVIEYSKAIDCDNSNPVYYCNRA----ASNNKLKNYKL 141
E L + + D + A+ +AI + N A + +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231
Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ + A++ P Y + ++ A+E KA E PN+ +
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287
Score = 68.8 bits (168), Expect = 3e-13
Identities = 23/203 (11%), Positives = 62/203 (30%), Gaps = 33/203 (16%)
Query: 28 ESKEGIEVAVECLCKAYDI-PDNIDPASN---VDIESLFQLYYKDEVLQWYSN-INFSPT 82
++ + A++ L +A + PDN + + + E + + +P
Sbjct: 186 DNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG 245
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRA------------ 130
+ ++ ++D+P++A+ KA++ +N +C
Sbjct: 246 V-----TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 131 -------ASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
L+ A+ + A + + + + + + + Y+ A + K
Sbjct: 301 LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360
Query: 184 AELDPNDPLYANNMQAAMSNLNN 206
+ Q N
Sbjct: 361 FSKELTP----VAKQLLHLRYGN 379
Score = 66.5 bits (162), Expect = 2e-12
Identities = 27/214 (12%), Positives = 56/214 (26%), Gaps = 32/214 (14%)
Query: 24 TLNAESKEGIEVAVECLCKAYDI-PDNIDPASN--VDIESLFQLYYKDEVLQWYSN-INF 79
T E A C KA + P N + S + L + I
Sbjct: 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204
Query: 80 SPTEEVKIEAEKYKNLGNT----AMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK 135
+P L + ++ + +A++ + A +
Sbjct: 205 NPDN-----QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259
Query: 136 LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQM-------------------NDYKAA 176
A+ + A++ P+ A + ++G Y A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319
Query: 177 LEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ KA E + N + + + + + A
Sbjct: 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Score = 64.2 bits (156), Expect = 1e-11
Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 28/137 (20%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAI----DCDNSNPVYYCNRAASNNKLKNYKLALR 144
L + D+ E+A + K ++ ++K A+
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393
Query: 145 DCQIAIKI------------------------DPHYAKAYGRMGLAYTQMNDYKAALEAY 180
+KI + ++A + + A E
Sbjct: 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453
Query: 181 TKAAELDPNDPLYANNM 197
+ E P ++
Sbjct: 454 ERGLESGSLIPSASSWN 470
Score = 53.8 bits (129), Expect = 3e-08
Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 4/118 (3%)
Query: 86 KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRD 145
++ + + + AV KA + +++ A+ + Y+ A
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 146 CQIAIKIDPHYAKA---YGRMG-LAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
Q + + R G QM A+ + + +++
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 68.2 bits (167), Expect = 1e-14
Identities = 13/103 (12%), Positives = 36/103 (34%)
Query: 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
+ E G + ++ +A + + + + + + + + LA+
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
A +DP + + +++T ++ AAL + P
Sbjct: 75 NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 59.8 bits (145), Expect = 1e-11
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
S KL N A + + +P +A+ +GL + A+ A A LD
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 188 PNDPLYANNMQAAMSNLNNSSSA 210
P D + + +N +N+++A
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAA 104
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 66.9 bits (164), Expect = 2e-14
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 122 NPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYT 181
+P A + K N AL + ++ DP Y Y +G Y +++ A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 182 KAAELDPN--DPLYANNMQAAMSNL 204
+ E+ + +Q A
Sbjct: 66 QGIEVAREEGTQKDLSELQDAKLKA 90
Score = 42.6 bits (101), Expect = 1e-05
Identities = 9/58 (15%), Positives = 21/58 (36%)
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
DP + + + ++ AL + + E DP+ ++ L+ + A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
Score = 31.9 bits (73), Expect = 0.058
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
Y +LG + D+ + A+ Y++ I+ ++L++ KL
Sbjct: 41 VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE-----GTQKDLSELQDAKLKA----- 90
Query: 149 AIKIDPHYA 157
++ H+
Sbjct: 91 -EGLEHHHH 98
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 67.2 bits (164), Expect = 9e-14
Identities = 17/114 (14%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL---ALRD 145
+E++ LG + Q+ +++ Y +A+ N Y A + +
Sbjct: 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM 103
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
A+ +D + A + +Y A+E + K +L+ +++
Sbjct: 104 IDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVES 157
Score = 52.2 bits (125), Expect = 2e-08
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 3/112 (2%)
Query: 83 EEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLA 142
+ V+ E ++ ++ + Q PE + I + N + +Y +
Sbjct: 4 QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
Query: 143 LRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYK---AALEAYTKAAELDPNDP 191
L + A+++ A+ Y + KA LD N+
Sbjct: 64 LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115
Score = 49.9 bits (119), Expect = 1e-07
Identities = 15/79 (18%), Positives = 32/79 (40%)
Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
+ +N + L+ Q I+ +P ++ + +G Y NDY +L AY +A +L
Sbjct: 15 DPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR 74
Query: 188 PNDPLYANNMQAAMSNLNN 206
+ + + +
Sbjct: 75 GENAELYAALATVLYYQAS 93
Score = 27.1 bits (60), Expect = 5.7
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 166 AYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ + +A L+A +P + + N+ S++
Sbjct: 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 62.4 bits (153), Expect = 8e-13
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
+ N + K +Y A+ Q A+++DP+ A+A+ +G AY + DY A+E Y KA E
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 186 LDPNDPLYANNMQAAMSNL 204
LDPN+ N+ A
Sbjct: 72 LDPNNAEAKQNLGNAKQKQ 90
Score = 60.1 bits (147), Expect = 6e-12
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE + NLGN +Q ++A+ Y KA++ D +N + N + K +Y A+ Q
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 149 AIKIDPHYAKAYGRMGLAY 167
A+++DP+ A+A +G A
Sbjct: 69 ALELDPNNAEAKQNLGNAK 87
Score = 43.9 bits (105), Expect = 2e-06
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 152 IDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+DP A+A+ +G AY + DY A+E Y KA ELDPN+ N+ A + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 59.7 bits (145), Expect = 9e-12
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 128 NRAASNNKLKNYKLALRDCQIAIKIDPH-YAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
+ + AL+ + ++ +P +AY MG AY ++ D++ AL Y A EL
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 187 DPNDP-LYANNMQAAMSNLNN 206
+P+ P L A M + N N
Sbjct: 65 NPDSPALQARKMVMDILNFYN 85
Score = 43.5 bits (103), Expect = 4e-06
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-YCNRAASNNKLKNYKLALRDCQIAIKI 152
+ Q E A+ + + + Y + KL +++ AL + Q AI++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
+P R + L Y K
Sbjct: 65 NPDSPALQARKMVM--------DILNFYNKDM 88
Score = 29.2 bits (66), Expect = 0.46
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASN 133
E Y +GN + ++A+ Y AI+ + +P + +
Sbjct: 35 DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMD 79
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 59.3 bits (144), Expect = 2e-11
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 3/99 (3%)
Query: 104 KPEQAVIEYSKAIDCDNSNPVY---YCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAY 160
QAV Y KAI Y ++ L Y+ A +K P++
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 161 GRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
+ + Y+ +E K +D + QA
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQA 103
Score = 46.6 bits (111), Expect = 5e-07
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 3/78 (3%)
Query: 136 LKNYKLALRDCQIAIKI---DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
L A+ + AI A+ Y +G + + +Y+ A + PN
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 193 YANNMQAAMSNLNNSSSA 210
+ NL
Sbjct: 63 LRVFYAMVLYNLGRYEQG 80
Score = 42.0 bits (99), Expect = 2e-05
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 13/99 (13%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
AE Y LG+T + +A + + ++ A L Y+ +
Sbjct: 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK 86
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
I + YK A+ Y A +LD
Sbjct: 87 IIAETSDDE-----------TIQSYKQAILFY--ADKLD 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 7e-11
Identities = 58/370 (15%), Positives = 103/370 (27%), Gaps = 111/370 (30%)
Query: 6 EDIITSVITFLRKELLRDTLNAESKEGIEVAVE-CLCKAYDI------PDNIDPASNVDI 58
+ II S L TL ++ +E ++ VE L Y + P+ +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 59 ESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEY------ 112
+D + + N F+ V + Y L A+ + +P + V+
Sbjct: 112 YI----EQRDRL--YNDNQVFAK-YNVSRL-QPYLKL-RQALLELRPAKNVLIDGVLGSG 162
Query: 113 ----------SKAIDCDNSNPVYY-----CNRAASN----NKL-----KNYKLALRDCQI 148
S + C +++ CN + KL N+ + D
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-SRSDHSS 221
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL---DPNDP--LYANNMQAAMSN 203
IK+ H +A R L Y+ L L + + A N+ +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKP---YENCL--------LVLLNVQNAKAWNAFNLSCKI-- 268
Query: 204 LNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGE-----LFAN---------PGQQAT 249
L + V LS +T +S L P ++
Sbjct: 269 LLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVL 323
Query: 250 AT-------------DGSNT-------GIQALLNASQQIAAQLEQRNPELVEQIFQQFGP 289
T DG T L I + L P ++F +
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---IESSLNVLEPAEYRKMFDRL-- 378
Query: 290 ALNNFKSNVP 299
++ F +
Sbjct: 379 SV--FPPSAH 386
Score = 51.0 bits (121), Expect = 3e-07
Identities = 50/345 (14%), Positives = 115/345 (33%), Gaps = 102/345 (29%)
Query: 8 IIT---SVITFL--------RKELLRDTLNAESKEGIEVAVECL-CKAYDIP---DNIDP 52
+ T V FL + TL E + ++ L C+ D+P +P
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 53 ASNVDIESLFQLYYKDEVLQW--YSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVI 110
+ S+ +D + W + ++N + IE+ L ++
Sbjct: 328 RR---L-SIIAESIRDGLATWDNWKHVNCDKLTTI-IES-SLNVLEPAEYRK-------- 373
Query: 111 EYSK-AIDCDNSN-P-----VYYCNRAASN-----NKLKNYKLALRD-CQIAIKIDPHYA 157
+ + ++ +++ P + + + S+ NKL Y L + + I I Y
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY- 432
Query: 158 KAYGRMGLAYTQMNDY---KAALEAYTKAAELDPND--PLYANN---------MQAA--- 200
+ L N+Y ++ ++ Y D +D P Y + ++
Sbjct: 433 -----LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 201 -----MSNL------------NNSSSASGSGGVFPGLSEMS------TKVLSDPSIQQVF 237
+ ++S++ + SG + L ++ +DP +++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERLV 545
Query: 238 GEL--F-ANPGQQATATDGSNTGIQ-ALLNASQQI---AAQLEQR 275
+ F + + ++ ++ AL+ + I A + QR
Sbjct: 546 NAILDFLPKIEENLICSKYTDL-LRIALMAEDEAIFEEAHKQVQR 589
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 61.3 bits (148), Expect = 8e-11
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166
I+ + N+ + Y +A S + + I ++ + Y +G
Sbjct: 261 NTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKV 319
Query: 167 YTQMNDYKAALEAYTKAAELDPNDPLY 193
Y + A +AY A L P
Sbjct: 320 YEMKGMNREAADAYLTAFNLRPGANTL 346
Score = 48.2 bits (114), Expect = 2e-06
Identities = 9/119 (7%), Positives = 28/119 (23%), Gaps = 14/119 (11%)
Query: 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDC 146
+A Y G+ +A + + +A + +
Sbjct: 201 YQAHDYLLHGD----DKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256
Query: 147 Q----------IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
+ + + + Y ++ + +A +L+ + Y
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVL 315
Score = 46.2 bits (109), Expect = 6e-06
Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 8/166 (4%)
Query: 22 RDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFS 80
D L + + A E L + P+ + + + + + + +N
Sbjct: 204 HDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263
Query: 81 PTEEVKI-----EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNK 135
V + + Y+ +A+ + K +++ + ID + S + Y
Sbjct: 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322
Query: 136 LKNYKLALRDCQIAIKIDPHYAKAY-GRMGLAYTQMNDYKAALEAY 180
+ A A + P Y G+ T + L+ +
Sbjct: 323 KGMNREAADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF 368
Score = 30.5 bits (68), Expect = 0.80
Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 13/133 (9%)
Query: 138 NYKLALRDCQIAIKIDPHYAKAY-----GRMGLAYTQMNDYKAALEAYTKAAELDPNDPL 192
N R + KI PH L + A E + + P
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFT- 233
Query: 193 YANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLS------DPSIQQVFGELFANPGQ 246
YA +A + + +S L+ +++ I Q+ G+
Sbjct: 234 YARAEKALVDIVRHSQHPL-DEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292
Query: 247 QATATDGSNTGIQ 259
+ NTGI
Sbjct: 293 TDESYQAINTGID 305
Score = 28.9 bits (64), Expect = 2.4
Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 10/128 (7%)
Query: 20 LLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYK--DEVLQWYSN- 76
++R + + ++ + + +P+ + + I+++ L DE Q +
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTG 303
Query: 77 INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY-CNRAASNNK 135
I+ + Y LG + +A Y A + Y
Sbjct: 304 IDLEMS------WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357
Query: 136 LKNYKLAL 143
+ L
Sbjct: 358 VPYVVPYL 365
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 60.6 bits (147), Expect = 1e-10
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN-------KLKNYK 140
+AE + + + ++ +A+D ++P+Y S K+Y
Sbjct: 140 KAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYD 199
Query: 141 LALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYA 194
AL + A+++ D A + + +Y + D + A+E + KAA++
Sbjct: 200 KALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE--KVP 257
Query: 195 NNMQAAMSNL 204
+ + + L
Sbjct: 258 DLLPKVLFGL 267
Score = 48.7 bits (116), Expect = 1e-06
Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 18/156 (11%)
Query: 66 YKDEVLQWYSNINFSPTEEV--KIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP 123
K EV Q + + + +++ + + ++ K ++ ++ +
Sbjct: 34 LKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLD-YLEPGKTYGNRPTVTELLETIETPQ 92
Query: 124 V---------YYCNRAASNNKLKNYKLALRDCQIAIKI------DPHYAKAYGRMGLAYT 168
R K Y A+ + A K D A+ + ++ AY
Sbjct: 93 KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY 152
Query: 169 QMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
M ++ +A ++ N PLY+ ++ +
Sbjct: 153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Score = 46.0 bits (109), Expect = 7e-06
Identities = 14/121 (11%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAV------IEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL 141
+ + ++A+ +E + I D + N A S ++ + ++
Sbjct: 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQM 240
Query: 142 ALRDCQIAIKI-----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL--DPNDPLYA 194
A+ Q A K+ K + + + A + + + + Y
Sbjct: 241 AVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYK 300
Query: 195 N 195
Sbjct: 301 E 301
Score = 44.8 bits (106), Expect = 2e-05
Identities = 9/102 (8%), Positives = 25/102 (24%), Gaps = 7/102 (6%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDCQIAI 150
L T + + ++A + +D + +Y + + R +
Sbjct: 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLL 323
Query: 151 KI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
+ + ++ A Y K +
Sbjct: 324 SYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 59.3 bits (143), Expect = 3e-10
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQ 147
+ Y + ++ E+A AI+ + +N + R L K+ +
Sbjct: 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYIT 156
Query: 148 IAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNS 207
I+ P + + + + D LE D + + Q +
Sbjct: 157 AIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216
Query: 208 SSA 210
+
Sbjct: 217 DNE 219
Score = 58.9 bits (142), Expect = 4e-10
Identities = 13/110 (11%), Positives = 32/110 (29%)
Query: 102 QDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYG 161
Q + + + I+ N + +R L++ L + D A+
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204
Query: 162 RMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSAS 211
+ + L+ + + D + N +SN + +
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254
Score = 58.2 bits (140), Expect = 8e-10
Identities = 14/125 (11%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
+ + + P Q + + ++ D N + +R + K + L+
Sbjct: 166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ 225
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDY------KAALEAYTKAAELDPNDPLYANNMQAAMS 202
+K D + + + Y + ++ + +L P++ N ++ +
Sbjct: 226 LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ 285
Query: 203 NLNNS 207
+ S
Sbjct: 286 DRGLS 290
Score = 47.0 bits (111), Expect = 3e-06
Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKL------ALRD 145
+++ + + + + + D N + R + Y ++
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQY 262
Query: 146 CQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP 191
IK+ PH A+ + + +L P+
Sbjct: 263 TLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS 307
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 56.7 bits (136), Expect = 2e-09
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 2/119 (1%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL--KNYKLALRDCQIAIK 151
++ D+ + A E K D D + A + + + A Q
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSA 210
+ ++AA +A + D P N+ +L
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV 253
Score = 41.3 bits (96), Expect = 2e-04
Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 10/151 (6%)
Query: 47 PDNIDPASNVDIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPE 106
P+ + VL + + V++ AE +
Sbjct: 30 PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIV---- 85
Query: 107 QAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLA 166
A ++ + D +N + A+ +N ALR ++
Sbjct: 86 -AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQ-----I 139
Query: 167 YTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+++ A + K + D + L
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLAT 170
Score = 32.4 bits (73), Expect = 0.14
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 12/95 (12%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQIAI 150
M Q + E A +A+D D+ +P N + L K ++ R
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262
Query: 151 KIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
+ +Y+A + +
Sbjct: 263 DAHRSHPFI-----------KEYRAKENDFDRLVL 286
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 55.6 bits (134), Expect = 5e-09
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 13/112 (11%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNN-------KLKNYK 140
+AE + + + + ++ +A + + Y ++ LK Y+
Sbjct: 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYE 201
Query: 141 LALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
A+ Q A + + +GL + Y+ A+ + +A +
Sbjct: 202 DAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253
Score = 46.4 bits (110), Expect = 6e-06
Identities = 21/194 (10%), Positives = 56/194 (28%), Gaps = 23/194 (11%)
Query: 18 KELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIE-SLFQLYYKDEVLQWYSN 76
E + + + I A + D ++ ++ + SL + + +L++
Sbjct: 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHN-LMLEYLEP 71
Query: 77 INFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKL 136
+ EE ++ + + + + R
Sbjct: 72 LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYY---------------FNFFRGMYELDQ 116
Query: 137 KNYKLALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
+ Y A++ + A A+ + +M +Y M +++ +A E+
Sbjct: 117 REYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH 176
Query: 191 PLYANNMQAAMSNL 204
Y + S
Sbjct: 177 EAYNIRLLQCHSLF 190
Score = 45.2 bits (107), Expect = 2e-05
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYYCNRAASNNKLKNYKLA 142
+ + + + E A+ + KA + N N Y+ A
Sbjct: 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243
Query: 143 LRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
+ + AI + P +AY + + ++ A E ++K
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293
Score = 42.5 bits (100), Expect = 1e-04
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAID-CDNSNPVYYCNRAASNNKLKNYKLALRDC 146
+ Y + + K ++A +SK + + V Y + L
Sbjct: 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322
Query: 147 QIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
Q + Y + +++ A + K ++
Sbjct: 323 QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 54.1 bits (130), Expect = 2e-08
Identities = 20/171 (11%), Positives = 41/171 (23%), Gaps = 19/171 (11%)
Query: 36 AVECLCKAYDIPDNIDPASNV--DIESLFQLYYK----DEVLQWYSN-INFSPTEEVKIE 88
A + + + N + E + E +Q+
Sbjct: 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT 114
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDC---DNSNPV---YYCNRAASNNKLKNYKLA 142
A + M+ +AV Y +A + + + + + A
Sbjct: 115 AAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEA 174
Query: 143 LRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELD 187
Q + P K L DY AA + ++ +
Sbjct: 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225
Score = 47.2 bits (112), Expect = 2e-06
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 11/119 (9%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPVYYCNRAASNNKLKNYKLA 142
A+ ++ G + +AV KA +RA + + A
Sbjct: 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKA 134
Query: 143 LRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
+ Q A + A+ G+ + + A + K + Y
Sbjct: 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193
Score = 40.6 bits (95), Expect = 3e-04
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 28/98 (28%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQI 148
A +Y + EQA Y + +
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEA----------------------------HA 67
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
+ H AKA+ + G+ + A++ KA+ +
Sbjct: 68 NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM 105
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 52.1 bits (124), Expect = 2e-08
Identities = 19/133 (14%), Positives = 44/133 (33%), Gaps = 26/133 (19%)
Query: 94 NLGNTAMQQDKP-----EQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYK-------- 140
LG+ + + EQ + + + +L +
Sbjct: 2 PLGSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM 61
Query: 141 --LALRDCQIAIKIDPHYAKAYGRMGLAYTQM-----------NDYKAALEAYTKAAELD 187
A+ + A+ IDP +A +G AYT +++ A + + +A +
Sbjct: 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Query: 188 PNDPLYANNMQAA 200
P++ Y +++
Sbjct: 122 PDNTHYLKSLEMT 134
Score = 28.6 bits (63), Expect = 1.7
Identities = 5/55 (9%), Positives = 16/55 (29%)
Query: 159 AYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGS 213
+ ++ ++ + + +P D + L+ S S +
Sbjct: 4 GSMDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 53.5 bits (129), Expect = 3e-08
Identities = 19/130 (14%), Positives = 34/130 (26%), Gaps = 15/130 (11%)
Query: 64 LYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP 123
D Q S + + + G V + AI +
Sbjct: 28 TNSHDGNSQQGSGSDGGSSM-----CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Query: 124 ----VYYCNRAASNNKLKNYKLAL----RDCQIAIKID--PHYAKAYGRMGLAYTQMNDY 173
Y + L +Y A+ D +A ++ AK+ G +G M +
Sbjct: 83 RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRF 142
Query: 174 KAALEAYTKA 183
A +
Sbjct: 143 DEAAICCERH 152
Score = 49.6 bits (119), Expect = 5e-07
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
LG+ + + + D +S + + + + Q AI+
Sbjct: 18 SLGLGSGGGGTNSHDGN-SQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQ 76
Query: 152 I----DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ Y ++G AY + DY A++ +
Sbjct: 77 AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD 112
Score = 47.7 bits (114), Expect = 2e-06
Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 12/111 (10%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAID-----CDNSNPVY-YCNRAASNNKLKNYKL 141
E NLGN+ + + E A Y + + + + + L +
Sbjct: 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT 321
Query: 142 ALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
A+ + I A+A +G A++ + ++ AL+ + +L
Sbjct: 322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372
Score = 45.0 bits (107), Expect = 2e-05
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
E NLGN + K D + RA ++ Y+ L +
Sbjct: 165 EGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL-----TRA-----VEFYQENL---K 211
Query: 148 IAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ + +A G +G Y + D++AA+E + +
Sbjct: 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249
Score = 41.5 bits (98), Expect = 2e-04
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 32/101 (31%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ NLGNT ++ AI+ ++ L +
Sbjct: 222 QGRACGNLGNTYYLLG-------DFQAAIEH--------------------HQERL---R 251
Query: 148 IAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
IA + +A +G ++ + ++ A E Y + L
Sbjct: 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292
Score = 38.8 bits (91), Expect = 0.001
Identities = 7/68 (10%), Positives = 14/68 (20%), Gaps = 5/68 (7%)
Query: 125 YYCNRAASNNKLKNYKLALRDCQIAIKID--PHYAKAYGRMGLAYTQMNDYKAALEAYTK 182
+ ++ Q D G D +A + +
Sbjct: 17 SSLGLGSGGGGTNSHDGNS---QQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73
Query: 183 AAELDPND 190
A + D
Sbjct: 74 AIQAGTED 81
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 53.0 bits (128), Expect = 3e-08
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----VYYCNRAASNNKLKNYKLAL 143
+ G + V + A+ + Y + L +Y AL
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63
Query: 144 RDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ + AKA G +G + ++ A+ +
Sbjct: 64 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109
Score = 48.0 bits (115), Expect = 1e-06
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLKNY 139
E Y NLGN + + E A Y K + + + + L++Y
Sbjct: 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDY 279
Query: 140 KLALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
+ A+ + I +A +G AYT + ++ A+ K E+
Sbjct: 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332
Score = 48.0 bits (115), Expect = 2e-06
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
EA NLGN + K ++ A + Y+ L
Sbjct: 122 EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNAL--QAA-----VDLYEENL---S 171
Query: 148 IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ + +A+G +G + + +++ A+ A+ +
Sbjct: 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209
Score = 46.5 bits (111), Expect = 5e-06
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEY-------SKAIDCDNSNPVYYCNRAASNNKLKNYK 140
+ + NLGNT A + +K + Y N + L ++
Sbjct: 182 QGRAFGNLGNTHYLLGNFRDA-VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240
Query: 141 LALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
A + + + A++ +G YT + DY+ A++ + K
Sbjct: 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289
Score = 33.8 bits (78), Expect = 0.053
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
G + D +A + + A ++ D
Sbjct: 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED 38
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 53.1 bits (128), Expect = 4e-08
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 10/106 (9%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP----VYYCNRAASNNKLKNYKLAL 143
+ G + V + A+ + Y + L +Y AL
Sbjct: 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 67
Query: 144 RDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ + AKA G +G + ++ A+ +
Sbjct: 68 EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113
Score = 48.5 bits (116), Expect = 1e-06
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 16/113 (14%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLKNY 139
E Y NLGN + + E A Y K + + + + L++Y
Sbjct: 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDY 283
Query: 140 KLALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
+ A+ + I +A +G AYT + ++ A+ K E+
Sbjct: 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336
Score = 47.3 bits (113), Expect = 3e-06
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEY-------SKAIDCDNSNPVYYCNRAASNNKLKNYK 140
+ + NLGNT A + +K + Y N + L ++
Sbjct: 186 QGRAFGNLGNTHYLLGNFRDA-VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244
Query: 141 LALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
A + + + A++ +G YT + DY+ A++ + K
Sbjct: 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293
Score = 46.5 bits (111), Expect = 5e-06
Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 12/98 (12%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
EA NLGN + K + A + Y+ L
Sbjct: 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL--QAA-----VDFYEENL---S 175
Query: 148 IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ + +A+G +G + + +++ A+ A+ +
Sbjct: 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213
Score = 33.0 bits (76), Expect = 0.11
Identities = 5/34 (14%), Positives = 11/34 (32%)
Query: 157 AKAYGRMGLAYTQMNDYKAALEAYTKAAELDPND 190
G + D +A + + A ++ D
Sbjct: 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTED 42
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 50.4 bits (121), Expect = 1e-07
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPV--YYCNRAASNNKLKNYK 140
E +G + A + + + ++ A +
Sbjct: 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLA 124
Query: 141 LALRDCQ----IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
A ++ + A + D A A+ +G Q + A + + +A ++
Sbjct: 125 GARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176
Score = 42.6 bits (101), Expect = 5e-05
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 32/101 (31%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQ 147
+ LG D+ ++A +++ Q
Sbjct: 25 ASGARFMLGYVYAFMDRFDEA---------------------------RASFQALQ---Q 54
Query: 148 IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
A K H +A ++G+ ++ AA + + EL
Sbjct: 55 QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEEREL 95
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 12/98 (12%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKA--IDCDNSNPVY----YCNRAASNNKLKNYKL 141
+ + A+ A EY K+ + V + + KN
Sbjct: 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165
Query: 142 ALRDCQIAIKI-----DPHY-AKAYGRMGLAYTQMNDY 173
A + A I D + R+ + +
Sbjct: 166 AQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
Score = 36.1 bits (84), Expect = 0.007
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 138 NYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
+Y LA R Q + + A +G Y M+ + A ++ +
Sbjct: 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ 55
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 45.6 bits (109), Expect = 3e-06
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 12/108 (11%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDC-----DNSNPVY-YCNRAASNNKLKNYKL 141
+ + NLGNT AVI + + + D + Y N + L ++
Sbjct: 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFET 67
Query: 142 ALRDCQ----IAIKIDPHY--AKAYGRMGLAYTQMNDYKAALEAYTKA 183
A + +A ++ A++ +G YT + DY+ A++ + K
Sbjct: 68 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115
Score = 45.2 bits (108), Expect = 4e-06
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 16/110 (14%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY--------YCNRAASNNKLKNY 139
E Y NLGN + + E A Y K + + + + L++Y
Sbjct: 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSLGNTYTLLQDY 105
Query: 140 KLALRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ A+ + I +A +G AYT + ++ A+ K
Sbjct: 106 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 46.5 bits (110), Expect = 4e-06
Identities = 31/177 (17%), Positives = 47/177 (26%), Gaps = 24/177 (13%)
Query: 36 AVECLCKAYDI---PDNIDPASNVDIESLFQLYYK----DEVLQWYSNIN--FSPTEEVK 86
A + KA D N D A N ++ + + N F+ + +
Sbjct: 56 AGDSFLKAADYQKKAGNEDEAGNT-YVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR 114
Query: 87 IEAEKYKNLGNTAMQQ-DKPEQAVIEYSKAIDC---DNSNPVY---YCNRAASNNKLKNY 139
A LG +A+ Y A + D S + + A Y
Sbjct: 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174
Query: 140 KLALRDCQIAIKIDPH-------YAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
A IK + + GL D AA + DPN
Sbjct: 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231
Score = 44.2 bits (104), Expect = 2e-05
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 13/131 (9%)
Query: 73 WYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------VYY 126
+ + S + + + A+ + + A + KA D Y
Sbjct: 21 FMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTY 80
Query: 127 CNRAASNNKLKNYKLALRDCQIAIKIDPHY------AKAYGRMG-LAYTQMNDYKAALEA 179
N A+ + AI+I H A +G + ++DY A++
Sbjct: 81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC 140
Query: 180 YTKAAELDPND 190
Y A E D
Sbjct: 141 YELAGEWYAQD 151
Score = 41.2 bits (96), Expect = 3e-04
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 13/129 (10%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY-----YCNRAASN--NKLKNYKL 141
Y AV AI + + N L +Y
Sbjct: 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAK 136
Query: 142 ALRDCQIAIKI------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYAN 195
A+ ++A + K + + Y A + Y+K + + L
Sbjct: 137 AIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196
Query: 196 NMQAAMSNL 204
+++
Sbjct: 197 SLKDYFLKK 205
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 44.1 bits (103), Expect = 1e-05
Identities = 17/149 (11%), Positives = 42/149 (28%), Gaps = 23/149 (15%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNP------------VYYCNRAASNNK 135
A + + + ++A +A++ ++ P + A +
Sbjct: 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69
Query: 136 LKNYKLALRDCQIAIKIDPH-----------YAKAYGRMGLAYTQMNDYKAALEAYTKAA 184
L+++ AL A+ + A LA + A+ + K
Sbjct: 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129
Query: 185 ELDPNDPLYANNMQAAMSNLNNSSSASGS 213
E+ + M + + G+
Sbjct: 130 EMIEERKGETPGKERMMEVAIDRIAQLGA 158
Score = 32.2 bits (72), Expect = 0.12
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 11/104 (10%)
Query: 87 IEAEKYKNLGNTAMQQDKPEQAVIEYSKAI-----------DCDNSNPVYYCNRAASNNK 135
+A + L ++A+ KA+ D +RA + +
Sbjct: 55 FDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDG 114
Query: 136 LKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEA 179
L A+ + + +++ D A L A
Sbjct: 115 LGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 39.6 bits (92), Expect = 8e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 142 ALRDCQIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDP----LYANNM 197
AL AIK P A D++ A E ++ +L P + +
Sbjct: 16 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75
Query: 198 QAAM 201
+AA
Sbjct: 76 KAAQ 79
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 38.5 bits (90), Expect = 0.002
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 207 SSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQ 266
S++ G G S SD + Q L PG + + ++ I L+ +
Sbjct: 114 SAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSISNNLHWYR 173
Query: 267 QIAAQLEQRNPELVEQIFQQFGPALNNFKSNVPRNPPGNGDGSSGS 312
Q + + +P L+ I + +P G+G G+ +
Sbjct: 174 QKSHE----SPRLL--IKY-----ASQSIFGIPSRFSGSGSGTEFT 208
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 38.3 bits (90), Expect = 0.002
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 15/107 (14%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDN---------SNPVYYCNRAASNNKLKNYKLA 142
NL + ++Q K +QA Y + + + N + + K
Sbjct: 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257
Query: 143 LRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA 183
+ P +G Y + ++AA A
Sbjct: 258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304
Score = 36.7 bits (86), Expect = 0.005
Identities = 30/139 (21%), Positives = 42/139 (30%), Gaps = 29/139 (20%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----------YCNRAASNNKLKN 138
A L Q+K + A + A+ N A K
Sbjct: 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREK--TLGKDHPAVAATLNNLAVLYGKRGK 126
Query: 139 YKLALRDCQIAIKID--------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE----- 185
YK A C+ A++I P AK + L Y+ Y +A E
Sbjct: 127 YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186
Query: 186 LDPNDPLYANNMQAAMSNL 204
L P+DP A +NL
Sbjct: 187 LGPDDPNVA----KTKNNL 201
Score = 35.2 bits (82), Expect = 0.022
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 26/133 (19%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCD-----NSNP---VYYCNRAASNNKLKNYKLALRD 145
NL ++ K ++A +A++ +P N A Y+
Sbjct: 116 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175
Query: 146 CQIAIKI--------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA------AELDPNDP 191
Q A++I DP+ AK + Y + +K A Y + E D
Sbjct: 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235
Query: 192 LYANNMQAAMSNL 204
+
Sbjct: 236 ENK----PIWMHA 244
Score = 34.1 bits (79), Expect = 0.044
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 126 YCNRAASNNKLKNYKLALRDCQIAIKI--------DPHYAKAYGRMGLAYTQMNDYKAAL 177
N Y++A+ C+ A++ P A + L Y N YK A
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 178 EAYTKAAE-----LDPNDPLYANNMQAAMSNL 204
A L + P A A ++NL
Sbjct: 90 NLLNDALAIREKTLGKDHPAVA----ATLNNL 117
Score = 33.3 bits (77), Expect = 0.083
Identities = 26/139 (18%), Positives = 38/139 (27%), Gaps = 29/139 (20%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----------YCNRAASNNKLKN 138
NL Q + E AV +A++ A
Sbjct: 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK--TSGHDHPDVATMLNILALVYRDQNK 84
Query: 139 YKLALRDCQIAIKI--------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE----- 185
YK A A+ I P A + + Y + YK A +A E
Sbjct: 85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144
Query: 186 LDPNDPLYANNMQAAMSNL 204
L + P A ++NL
Sbjct: 145 LGKDHPDVA----KQLNNL 159
Score = 31.4 bits (72), Expect = 0.37
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 9/57 (15%)
Query: 153 DPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE-----LDPNDPLYANNMQAAMSNL 204
P + + + Y Y+ A+ +A E + P A ++ L
Sbjct: 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVA----TMLNIL 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 37.9 bits (89), Expect = 0.003
Identities = 28/139 (20%), Positives = 41/139 (29%), Gaps = 29/139 (20%)
Query: 89 AEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----------YCNRAASNNKLKN 138
A L Q+K ++A + A+ N A K
Sbjct: 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREK--TLGKDHPAVAATLNNLAVLYGKRGK 100
Query: 139 YKLALRDCQIAIKID--------PHYAKAYGRMGLAYTQMNDYKAALEAYTKA-----AE 185
YK A C+ A++I P AK + L + Y +A
Sbjct: 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR 160
Query: 186 LDPNDPLYANNMQAAMSNL 204
L P+DP A +NL
Sbjct: 161 LGPDDPNVA----KTKNNL 175
Score = 36.7 bits (86), Expect = 0.006
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 15/109 (13%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDC------DNSNP---VYYCNRAASNNKLKNYKLA 142
NL + ++Q K + A Y + + + N + + + +
Sbjct: 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231
Query: 143 LRDCQIAIKID------PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
+ P +G Y + +AA A+
Sbjct: 232 APYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280
Score = 34.0 bits (79), Expect = 0.046
Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 30/135 (22%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVY----------YCNRAASNNKLKNYKLAL 143
NL ++ K ++A +A++ V N A +
Sbjct: 90 NLAVLYGKRGKYKEAEPLCKRALEIREK--VLGKFHPDVAKQLNNLALLCQNQGKAEEVE 147
Query: 144 RDCQIAIKI--------DPHYAKAYGRMGLAYTQMNDYKAALEAYTKA------AELDPN 189
+ A++I DP+ AK + Y + Y+ A Y + E
Sbjct: 148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSV 207
Query: 190 DPLYANNMQAAMSNL 204
+ +
Sbjct: 208 NGDNK----PIWMHA 218
Score = 32.1 bits (74), Expect = 0.19
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 128 NRAASNNKLKNYKLALRDCQIAIKI--------DPHYAKAYGRMGLAYTQMNDYKAALEA 179
+ ++ L A+ C+ A++ P A + L Y N YK A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 180 YTKAAE-----LDPNDPLYANNMQAAMSNL 204
A L + P A A ++NL
Sbjct: 66 LNDALAIREKTLGKDHPAVA----ATLNNL 91
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.005
Identities = 52/307 (16%), Positives = 88/307 (28%), Gaps = 85/307 (27%)
Query: 8 IITSVITFLRKELLRDTLNA---ESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQL 64
++ +F L++ N E EG D+ +P + ++ F
Sbjct: 20 LLVPTASFFIASQLQEQFNKILPEPTEGFA------------ADD-EPTTPAELVGKFLG 66
Query: 65 YYKDEVLQWYSNINFSPTEEV-KI---EAE-KYKNLGNT-----AMQQDKPEQAVIEYSK 114
Y V ++V + E E Y L A + + + +K
Sbjct: 67 YVSSLV----EPSKVGQFDQVLNLCLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTK 120
Query: 115 AIDCDNSNPVYYCNRAASNNKL-KNYKLALRDCQIAIKIDPHYAKAYGRMG--------- 164
+ N Y R + K AL A+ A+ G
Sbjct: 121 EL-IKN----YITARIMAKRPFDKKSNSALFR---AVGEGN--AQLVAIFGGQGNTDDYF 170
Query: 165 --LA--YTQMNDYKAALEAYTKAA-----EL--DPND--PLYANNMQAAMSNLNNSSSAS 211
L Y Y + K + EL D ++ + + L N S+
Sbjct: 171 EELRDLY---QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLENPSNT- 225
Query: 212 GSGGVFPGLSEMSTKVLSDPSIQ--Q-----VFGELFA-NPGQQATATDGSNTGIQALLN 263
P + + +S P I Q V +L PG+ + G+ Q L+
Sbjct: 226 ------PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 264 ASQQIAA 270
A IA
Sbjct: 280 AV-AIAE 285
Score = 37.0 bits (85), Expect = 0.009
Identities = 35/257 (13%), Positives = 63/257 (24%), Gaps = 87/257 (33%)
Query: 63 QLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIE-YSKAIDCDNS 121
QL +++ + PTE D+P E K +
Sbjct: 32 QL--QEQFNKILP----EPTEGFA--------------ADDEPT-TPAELVGKFLG---- 66
Query: 122 NPVYYCNRAASNNKLKNY----KLALRD--CQIAIKIDPHYAKAYGRMGLAYTQMNDYKA 175
Y + +K+ + L L + D H A A + T + K
Sbjct: 67 ----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-ALAAKLLQENDTTLVKTKE 121
Query: 176 ALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQ 235
++ Y A + P + + S L + G+ +
Sbjct: 122 LIKNYITARIMA-KRPF----DKKSNSALFRAVGE-GNAQLVA----------------- 158
Query: 236 VFGELFANPGQQATATDGSNTG----IQALLNASQQIAAQLEQRNPELVEQIFQQFGPAL 291
+FG GQ G+ ++ L LV + + L
Sbjct: 159 IFG------GQ------GNTDDYFEELRDLYQTY-----------HVLVGDLIKFSAETL 195
Query: 292 NNFKSNVPRNPPGNGDG 308
+ G
Sbjct: 196 SELIRTTLDAEKVFTQG 212
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 37.1 bits (85), Expect = 0.005
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 13/135 (9%)
Query: 65 YYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV 124
Y + W E + + + +++ E ++E K ++ +
Sbjct: 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150
Query: 125 YYCNRAASNN------KLKNYKLALRDCQIAIKI-------DPHYAKAYGRMGLAYTQMN 171
Y N N + K + + +K + K A +
Sbjct: 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS 210
Query: 172 DYKAALEAYTKAAEL 186
Y+ +L KA E+
Sbjct: 211 RYEESLYQVNKAIEI 225
Score = 31.3 bits (70), Expect = 0.33
Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 21/142 (14%)
Query: 18 KELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPASNVDIESLFQLYYKDEVLQWYSNI 77
K+LL L + Y + + +++L+ +
Sbjct: 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKG----------IDLFEQILKQLEAL 188
Query: 78 NFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAID-CDNSNPVY-----YCNRAA 131
+ + +VK+ N + E+++ + +KAI+ N + Y R
Sbjct: 189 HDNEEFDVKV----RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244
Query: 132 SNNKLKNYKLALRDC-QIAIKI 152
KL+ + + D + A
Sbjct: 245 CLRKLEYEEAEIEDAYKKASFF 266
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 34.6 bits (78), Expect = 0.036
Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 10/162 (6%)
Query: 57 DIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAI 116
++++ L+ + +Y+ + ++ + +K S +
Sbjct: 86 EVQANLSLFLE-AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHT----SAIV 140
Query: 117 DCDNSNPVYYCNRAASN-----NKLKNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN 171
+S+ Y C + A + A ++ P + Y ++ + +
Sbjct: 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG 200
Query: 172 DYKAALEAYTKAAELDPNDPLYANNMQAAMSNLNNSSSASGS 213
D+ + Y ++ + P + N+Q A+S S +
Sbjct: 201 DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242
Score = 30.7 bits (68), Expect = 0.68
Identities = 23/223 (10%), Positives = 65/223 (29%), Gaps = 9/223 (4%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIK 151
Y L A + + Y ++I P N + +K + ++
Sbjct: 189 YNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSD 248
Query: 152 IDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQ-------AAMSNL 204
+ K +G + L+ + + + EL + + + +L
Sbjct: 249 FIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKELLFQKAFNSQQLVHVTVINLFQLHHL 308
Query: 205 NNSSSASGSGGVFPGLSEMSTKV--LSDPSIQQVFGELFANPGQQATATDGSNTGIQALL 262
+ S+ + T++ L + + N Q+ + ++ +
Sbjct: 309 RDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCKCPLQNESQEESYNAYPLPAVKVSM 368
Query: 263 NASQQIAAQLEQRNPELVEQIFQQFGPALNNFKSNVPRNPPGN 305
+ + ++ + + I+ LN+F + +
Sbjct: 369 DWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHEEDLSSIS 411
Score = 30.3 bits (67), Expect = 0.83
Identities = 14/95 (14%), Positives = 35/95 (36%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
+LG+ A +++ QA Y A SN Y A + ++ + +I +
Sbjct: 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDP 188
+ A + A ++ + + ++ ++
Sbjct: 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDFIK 251
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 32.6 bits (75), Expect = 0.12
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 10 TSVITFLRKELLRDTLNAESKEGIEVAVECLCKAYDI-PDNIDPASNVDIESLFQLYYKD 68
+V FL K R A +E +++ V L + NI+ V +S +
Sbjct: 167 KTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITV-VKPDSDIVALSSE 225
Query: 69 EVLQWYSNINFSPTEE 84
E+ Q+ + I E+
Sbjct: 226 EINQYVTQIEQEKQEQ 241
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 31.0 bits (71), Expect = 0.29
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAE 185
+A + + DY+ A KAA
Sbjct: 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAA 46
Score = 28.0 bits (63), Expect = 3.6
Identities = 6/53 (11%), Positives = 10/53 (18%), Gaps = 9/53 (16%)
Query: 156 YAKAYGRMGLAYTQMN----DYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
+ D A+ AA ++ A L
Sbjct: 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-----ESDAAVDAQMLL 131
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 30.2 bits (69), Expect = 0.78
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 156 YAKAYGRMGLAYTQMNDYKAALEAYTKAAEL 186
K +G + D+ A + + KA +L
Sbjct: 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL 35
Score = 27.6 bits (62), Expect = 5.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 156 YAKAYGRMGLAYTQMN----DYKAALEAYTKAAELD 187
YA+ +G Y D+K A+E +TKA +L+
Sbjct: 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN 144
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 30.0 bits (66), Expect = 1.1
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 3/121 (2%)
Query: 197 MQAAMSNLNNSSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSN- 255
++A+ +N + + +G E + S S Q NP +
Sbjct: 189 LRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQFQN 248
Query: 256 --TGIQALLNASQQIAAQLEQRNPELVEQIFQQFGPALNNFKSNVPRNPPGNGDGSSGSS 313
IQ + QL Q NP+L++QI + + + +
Sbjct: 249 MRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGA 308
Query: 314 Q 314
Sbjct: 309 I 309
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 29.6 bits (67), Expect = 1.2
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 207 SSSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATAT 251
S+ GSGG G S+ + Q L + GQ+AT +
Sbjct: 116 SAGGGGSGGGGSG------GGGSELVMTQTPASLAVSLGQRATIS 154
>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl
reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica
napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*
Length = 297
Score = 29.7 bits (67), Expect = 1.3
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK--AAELDPND 190
+ +I P Y G M A KAALE+ T+ A E
Sbjct: 181 SERIIPGYG---GGMSSA-------KAALESDTRVLAFEAGRKQ 214
>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu
P.falciparum; HET: NAD FT1; 1.96A {Plasmodium
falciparum} PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A*
3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A*
2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A*
2foi_A* ...
Length = 329
Score = 29.1 bits (65), Expect = 1.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK--AAELDP 188
+ K+ P Y G M A KAALE+ T+ A L
Sbjct: 175 SQKVVPGYG---GGMSSA-------KAALESDTRVLAYHLGR 206
>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann
fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma
gondii} PDB: 2o50_A 3nj8_A*
Length = 315
Score = 29.0 bits (65), Expect = 1.9
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 12/42 (28%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK--AAELDP 188
A ++ P Y G M A KAALE+ T+ A E
Sbjct: 182 AERVVPGYG---GGMSSA-------KAALESDTRTLAWEAGQ 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 27.7 bits (61), Expect = 2.2
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 163 MGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM 197
+ A Q D AL K ELDP N+
Sbjct: 52 LSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P
structure initiative, PSI, joint center for structural
GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Length = 178
Score = 28.3 bits (63), Expect = 2.3
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 21 LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPAS-NVDIES-LFQLYYKDEVLQWYSNIN 78
D L ++ + A+ + Y+IP I ++ + I S L Y+ + + +
Sbjct: 105 FWDPLEPQAHDVDVKALIRIATVYNIPVAITRSTADFLISSPLMNDVYEKIQIDYEEELE 164
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix,
right handed super helix, modular structure', hydrolase;
1.95A {Helicobacter pylori} SCOP: a.118.18.1
Length = 138
Score = 27.8 bits (63), Expect = 2.3
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 156 YAKAYGRMGLAY------TQMNDYKAALEAYTKAAEL 186
+G Y + D + A + Y+KA L
Sbjct: 56 SGNGCRFLGDFYENGKYVKK--DLRKAAQYYSKACGL 90
Score = 26.7 bits (60), Expect = 6.8
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 156 YAKAYGRMGLAYTQ----MNDYKAALEAYTKAAEL 186
+G + + K A++ + KA L
Sbjct: 92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126
>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial
target, type II fatty acid biosynthesis,
enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A
{Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*
Length = 275
Score = 28.3 bits (64), Expect = 2.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK--AAELDPN 189
+ K HY MGLA KAALE+ + A +L +
Sbjct: 148 STKYMAHY----NVMGLA-------KAALESAVRYLAVDLGKH 179
>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P
reductase, oxidoreductase; 2.60A {Eimeria tenella}
Length = 319
Score = 28.6 bits (64), Expect = 2.8
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 12/40 (30%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK--AAEL 186
+ K+ P Y G M A KAALE+ + A E
Sbjct: 195 SEKVIPGY---GGGMSSA-------KAALESDCRTLAFEA 224
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 28.6 bits (64), Expect = 3.0
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 13/96 (13%)
Query: 103 DKPEQAVIEYSKAIDCDNSNPVYYCNRA---ASNNKLKNYKLALRDCQIAIKIDPHYAKA 159
D+ V KA N+ + Y A + + L+ + + A
Sbjct: 158 DQHLDDVERICKA--ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTA 213
Query: 160 YGRMGLAYTQMN------DYKAALEAYTKAAELDPN 189
+A + D K A K A P
Sbjct: 214 QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPA 249
Score = 27.0 bits (60), Expect = 9.2
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 156 YAKAYGRMGLAYTQMN----DYKAALEAYTKAAELDPNDPLYANNMQAAMSNL 204
+A +G Y + D KAA + KA + AA L
Sbjct: 282 QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAVGREV----------AADYYL 324
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2,
protein structure initiative; 2.15A {Vibrio
parahaemolyticus rimd 2210633}
Length = 93
Score = 26.8 bits (59), Expect = 3.1
Identities = 4/51 (7%), Positives = 22/51 (43%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNMQA 199
A++++P+ A + + ++ A++ + + + + +++
Sbjct: 35 ALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIES 85
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme,
flexible domains, ligase; 2.01A {Thermus thermophilus}
SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Length = 580
Score = 28.6 bits (65), Expect = 3.1
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 10/45 (22%)
Query: 156 YAKAYGRMGLAYTQMND----------YKAALEAYTKAAELDPND 190
AK + GLA+ ++ + + EA +A E P D
Sbjct: 340 VAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGD 384
>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid
biosynthesis, oxidation reduction; 1.50A {Thermus
thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*
Length = 261
Score = 28.3 bits (64), Expect = 3.3
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 13/43 (30%)
Query: 149 AIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTK--AAELDPN 189
+ K+ P Y M +A KAALEA + A EL P
Sbjct: 150 SEKVVPKY----NVMAIA-------KAALEASVRYLAYELGPK 181
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 27.2 bits (60), Expect = 4.8
Identities = 10/96 (10%), Positives = 29/96 (30%)
Query: 94 NLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKID 153
+ ++ + E A + N ++ L+ + + +
Sbjct: 45 AKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN 104
Query: 154 PHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPN 189
P + + + Y Q+ + ALE +++
Sbjct: 105 PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T
2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z
2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z
2wrl_Z 2wro_Z ...
Length = 206
Score = 27.3 bits (61), Expect = 5.8
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 34 EVAVECLCKAYDIPDNIDPASNVDIESL 61
++ V+ +IP+ I+ VD+ L
Sbjct: 123 DILVKVS--PRNIPEFIE----VDVSGL 144
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 27.6 bits (61), Expect = 6.1
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 88 EAEKYKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPVYY-CNRAASNNKLKNYKLALRDC 146
E + L +Q+ ++A+ Y KA D + V N + + +L Y R
Sbjct: 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112
Query: 147 QIAIKIDPHYAKAYGRMGLAYTQMNDYKAALEAYTKAAELDPNDPLYANNM-QAA 200
++ A + ++ + + + A D Y M AA
Sbjct: 113 ARESYVETELIFALAKTN----RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAA 163
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 27.6 bits (62), Expect = 6.6
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQ----MNDYKAALEAYTKAAE 185
++Y + + + + A R+G Q + ALE Y K+AE
Sbjct: 237 QDYTQSRVLFSQSAEQG--NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAE 287
Score = 26.8 bits (60), Expect = 9.9
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 137 KNYKLALRDCQIAIKIDPHYAKAYGRMGLAYTQMN----DYKAALEAYTKAAE 185
+ +K A+ + A A +G A Q D + A KAAE
Sbjct: 345 EEHKKAVEWFRKAA--AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer,
alpha-beta-BETA-alpha sandwich, electrosta charged
substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP:
d.58.34.1 d.58.34.1
Length = 325
Score = 27.3 bits (60), Expect = 7.2
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 69 EVLQWYSNI-NFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEY 112
+ +Y N ++ LG ++ KP++ +IEY
Sbjct: 279 DAAAFYCEKENLFLLQDEHRIRLVVNRLGLDSLAPFKPKERIIEY 323
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 26.7 bits (59), Expect = 7.6
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 124 VYYCNRAASNNKLKNYKLALRDCQIAIKIDPHYAKA 159
V+Y A N +LK Y+ AL+ + ++ +P +A
Sbjct: 74 VFY--LAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 27.1 bits (59), Expect = 8.2
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 16 LRKELLRDTLNAESKEGIEVAVECLCKAYDIPDNIDPAS 54
R LL+D+ N +S + IE + +C +
Sbjct: 255 ARTVLLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTH 293
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 26.9 bits (60), Expect = 8.4
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 208 SSASGSGGVFPGLSEMSTKVLSDPSIQQVFGELFANPGQQATAT-DGSNTGIQALLNASQ 266
S GSGG G + P+I + A+PG++ T T S++ + L Q
Sbjct: 125 SGGGGSGGGGSGGGGSQIVLTQSPAI------MSASPGEKVTLTCSASSSVSSSHLYWYQ 178
Query: 267 Q 267
Q
Sbjct: 179 Q 179
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 27.2 bits (61), Expect = 8.6
Identities = 11/51 (21%), Positives = 18/51 (35%)
Query: 220 LSEMSTKVLSDPSIQQVFGELFANPGQQATATDGSNTGIQALLNASQQIAA 270
L + +L D ++F EL TD ++ + IAA
Sbjct: 212 LRTIHQLLLDDDFFDEIFRELGIPYEPVRWRTDNPDSIEDKNARVIELIAA 262
>3tth_A Spermidine N1-acetyltransferase; central intermediary metabolism;
3.30A {Coxiella burnetii}
Length = 170
Score = 26.4 bits (59), Expect = 8.7
Identities = 14/100 (14%), Positives = 31/100 (31%), Gaps = 20/100 (20%)
Query: 57 DIESLFQLYYKDEVLQWYSNINFSPTEEVKIEAEKYKNLGNTAMQQDKPEQAVIEYSKAI 116
D++ + +L ++ ++ + E++ K+ + + +I+
Sbjct: 16 DLKFVHELNNNLSIMSYWFEEPYESYRELEDLHIKH-------IHDQSERRFIIK----- 63
Query: 117 DCDNSNPVYYCNRAASNNKLKNYKLALRDCQIAIKIDPHY 156
N V L R C+ AI I P
Sbjct: 64 -DLKDNKVGLVE-------LTEIDFIHRRCEFAIIISPGE 95
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A
1wo8_A
Length = 134
Score = 26.3 bits (58), Expect = 9.1
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 21 LRDTLNAESKEGIEVAVECLCKAYDIPDNIDPAS 54
RD L A+ E A+ +C + +P +P +
Sbjct: 81 FRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMA 114
>3klk_A Glucansucrase; native form, open conformation, multidomain protein,
glycosyltransferase, transferase; 1.65A {Lactobacillus
reuteri} PDB: 3kll_A* 3hz3_A*
Length = 1039
Score = 27.0 bits (59), Expect = 9.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 92 YKNLGNTAMQQDKPEQAVIEYSKAIDCDNSNPV 124
++ + TA D E+ A D DNSNPV
Sbjct: 221 WRLMNRTATNIDGKNYGGAEFLLANDIDNSNPV 253
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.360
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,735,586
Number of extensions: 282588
Number of successful extensions: 1482
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1078
Number of HSP's successfully gapped: 412
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.6 bits)