BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4131
(241 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
pdb|4BC7|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Arg419his Mutant
Length = 658
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 140/218 (64%), Gaps = 30/218 (13%)
Query: 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGK 104
+ + L L+ TN+S S + +DR+ RAHG L+E+F LR+ +RIPD+V+WP
Sbjct: 160 VNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTC----- 214
Query: 105 YSEHSD----TQISEKFD------------------PAGNQTQISNVPIRRVNSILWLDE 142
H D ++ K++ PA I ++ ++N ILW+DE
Sbjct: 215 ---HDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDE 271
Query: 143 DNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIED 202
+NL A +EAGI GQ+LER+L GY +GHEPDS EFS++GGW++TRASGMKKN+YGNIED
Sbjct: 272 NNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIED 331
Query: 203 LLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
L+V + +VT RG +E+ C+GPR+S+GPD +H I+GSE
Sbjct: 332 LVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG 369
>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
pdb|4BCA|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Tyr578phe Mutant
Length = 658
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 140/218 (64%), Gaps = 30/218 (13%)
Query: 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGK 104
+ + L L+ TN+S S + +DR+ RAHG L+E+F LR+ +RIPD+V+WP
Sbjct: 160 VNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTC----- 214
Query: 105 YSEHSD----TQISEKFD------------------PAGNQTQISNVPIRRVNSILWLDE 142
H D ++ K++ PA I ++ ++N ILW+DE
Sbjct: 215 ---HDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDE 271
Query: 143 DNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIED 202
+NL A +EAGI GQ+LER+L GY +GHEPDS EFS++GGW++TRASGMKKN+YGNIED
Sbjct: 272 NNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIED 331
Query: 203 LLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
L+V + +VT RG +E+ C+GPR+S+GPD +H I+GSE
Sbjct: 332 LVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG 369
>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BBY|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase:
Wild-Type
pdb|4BC9|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|B Chain B, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|C Chain C, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
pdb|4BC9|D Chain D, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-
Type, Adduct With Cyanoethyl
Length = 658
Score = 201 bits (512), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 140/218 (64%), Gaps = 30/218 (13%)
Query: 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGK 104
+ + L L+ TN+S S + +DR+ RAHG L+E+F LR+ +RIPD+V+WP
Sbjct: 160 VNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTC----- 214
Query: 105 YSEHSD----TQISEKFD------------------PAGNQTQISNVPIRRVNSILWLDE 142
H D ++ K++ PA I ++ ++N ILW+DE
Sbjct: 215 ---HDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDE 271
Query: 143 DNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIED 202
+NL A +EAGI GQ+LER+L GY +GHEPDS EFS++GGW++TRASGMKKN+YGNIED
Sbjct: 272 NNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIED 331
Query: 203 LLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
L+V + +VT RG +E+ C+GPR+S+GPD +H I+GSE
Sbjct: 332 LVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG 369
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 126 bits (317), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 24/191 (12%)
Query: 67 RLIRAHGQTLYEVFSLRQTGLKRIPDVVVWP------------------VYITFGKYSEH 108
R+ G++L ++ +R +K PD++V P V I G
Sbjct: 114 RITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMG----- 168
Query: 109 SDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT 168
+ I +P N+ ++ +RR+N +LW+D + ACI+ GI+G +LE++L+ +G +
Sbjct: 169 GGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVS 228
Query: 169 SGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSG 228
GH+PDS+EFS+LGGW+AT +SG + + YG+IED+ V VT GTLE G R +G
Sbjct: 229 LGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLEL-RNGARSGAG 287
Query: 229 PDFNHVILGSE 239
++ H+ILGSE
Sbjct: 288 INYKHIILGSE 298
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 68 LIRAHGQTLYEVFSLRQTG----LKRIPDVVVWPVYITFGKYSEHSDTQISEKFDPAGNQ 123
++R HG +F+L T L + D+ + GK E + Q +KFD A +
Sbjct: 1014 ILRRHGNLFITLFALMLTAGLPELTSVKDIQYLKDSLALGKSEEEALKQFKQKFDEALRE 1073
Query: 124 TQISNV 129
+ + V
Sbjct: 1074 SWTTKV 1079
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,314,987
Number of Sequences: 62578
Number of extensions: 289378
Number of successful extensions: 614
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 606
Number of HSP's gapped (non-prelim): 9
length of query: 241
length of database: 14,973,337
effective HSP length: 96
effective length of query: 145
effective length of database: 8,965,849
effective search space: 1300048105
effective search space used: 1300048105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)