BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4131
(241 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 210 bits (534), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/203 (53%), Positives = 133/203 (65%), Gaps = 24/203 (11%)
Query: 56 TNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWP------------------ 97
T V S +G DRL+R HGQTL +++SL +RIPD+VVWP
Sbjct: 124 TQVDYSAEGIDRLVRCHGQTLNDIYSLWHHKFRRIPDLVVWPRCHDEVVQLVRLANKHNV 183
Query: 98 VYITFGKYSEHSDTQISEKFDPAGNQTQ-ISNVPIRRVNSILWLDEDNLVACIEAGIIGQ 156
+ + FG T +S N+++ I + ++N +LWL+ +NL C E+GI+GQ
Sbjct: 184 MLVPFG-----GGTSVSGAITCPQNESRMICALDTSQMNRLLWLNRENLTVCFESGIVGQ 238
Query: 157 DLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTL 216
DLER L S G T GHEPDSYEFS+LGGWVATRASGMKKN+YGNIEDL+V+V MVT GTL
Sbjct: 239 DLERVLRSEGLTVGHEPDSYEFSTLGGWVATRASGMKKNVYGNIEDLVVRVRMVTPSGTL 298
Query: 217 ERPCRGPRVSSGPDFNHVILGSE 239
ER C PRVS GPDFNHVILGSE
Sbjct: 299 ERECSAPRVSCGPDFNHVILGSE 321
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/218 (45%), Positives = 141/218 (64%), Gaps = 30/218 (13%)
Query: 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGK 104
+ + L L+ TN+S S + +DR+ RAHG L+E+F LR+ +RIPD+V+WP
Sbjct: 160 VNEDFLHDLKETNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWP------- 212
Query: 105 YSEHSD----TQISEKFD------------------PAGNQTQISNVPIRRVNSILWLDE 142
+ H D ++ K++ PA I ++ ++N ILW+DE
Sbjct: 213 -TCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDE 271
Query: 143 DNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIED 202
+NL A +EAGI GQ+LER+L GY +GHEPDS EFS++GGWV+TRASGMKKN+YGNIED
Sbjct: 272 NNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWVSTRASGMKKNIYGNIED 331
Query: 203 LLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
L+V + MVT RG +E+ C+GPR+S+GPD +H I+GSE
Sbjct: 332 LVVHIKMVTPRGIIEKSCQGPRMSTGPDIHHFIMGSEG 369
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 201 bits (512), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 140/218 (64%), Gaps = 30/218 (13%)
Query: 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGK 104
+ + L L+ TN+S S + +DR+ RAHG L+E+F LR+ +RIPD+V+WP
Sbjct: 160 VNEDFLHELKKTNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTC----- 214
Query: 105 YSEHSD----TQISEKFD------------------PAGNQTQISNVPIRRVNSILWLDE 142
H D ++ K++ PA I ++ ++N ILW+DE
Sbjct: 215 ---HDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDE 271
Query: 143 DNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIED 202
+NL A +EAGI GQ+LER+L GY +GHEPDS EFS++GGW++TRASGMKKN+YGNIED
Sbjct: 272 NNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIED 331
Query: 203 LLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
L+V + +VT RG +E+ C+GPR+S+GPD +H I+GSE
Sbjct: 332 LVVHMKVVTPRGVIEKSCQGPRMSTGPDIHHFIMGSEG 369
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 137/218 (62%), Gaps = 30/218 (13%)
Query: 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGK 104
+ + L L+ +S S + +DR+ RAHG L+E+F LR+ +RIPD+VVWP
Sbjct: 147 VNEDFLQELKEARISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVVWPTC----- 201
Query: 105 YSEHSD----TQISEKFD------------------PAGNQTQISNVPIRRVNSILWLDE 142
H D ++ K++ PA I ++ ++N ILW+DE
Sbjct: 202 ---HDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDE 258
Query: 143 DNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIED 202
+NL A +EAGI GQDLER+L GY +GHEPDS EFS++GGW++TRASGMKKN+YGNIED
Sbjct: 259 NNLTAHVEAGITGQDLERQLKESGYCTGHEPDSLEFSTVGGWISTRASGMKKNIYGNIED 318
Query: 203 LLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
L+V + MVT RG +E+ +GPR+S+GPD +H I+GSE
Sbjct: 319 LVVHMKMVTPRGVIEKSSQGPRMSTGPDIHHFIMGSEG 356
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 136/218 (62%), Gaps = 30/218 (13%)
Query: 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGK 104
+ + L L+ ++S S +DR+ RAHG L+E+F LR+ +RIPD+VVWP
Sbjct: 146 VNEDFLQELKEAHISYSQDADDRVFRAHGHCLHEIFLLREGMFERIPDIVVWPTC----- 200
Query: 105 YSEHSD----TQISEKFD------------------PAGNQTQISNVPIRRVNSILWLDE 142
H D ++ K++ PA I ++ ++N ILW+DE
Sbjct: 201 ---HDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDE 257
Query: 143 DNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIED 202
+NL A +EAGI GQDLER+L GY +GHEPDS EFS +GGW++TRASGMKKN+YGNIED
Sbjct: 258 NNLTAHVEAGITGQDLERQLKESGYCTGHEPDSLEFSIVGGWISTRASGMKKNVYGNIED 317
Query: 203 LLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
L+V + MVT RG +E+ +GPR+S+GPD +H I+GSE
Sbjct: 318 LVVHMKMVTPRGVIEKSSQGPRMSTGPDIHHFIMGSEG 355
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 134/207 (64%), Gaps = 14/207 (6%)
Query: 48 EVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWP------VYIT 101
+++ L+ +S S + RL+R HG T++++ +LR+ + R+PD+VVWP V I
Sbjct: 92 DIIEFLQENKISFSNEARIRLMRGHGHTVHDMINLREGKIPRLPDIVVWPKSEHEIVKII 151
Query: 102 FGKYSEHS-------DTQISEKFD-PAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGI 153
G S + T ++ D P + + ++ + ++ ILW+D +NL +AGI
Sbjct: 152 EGAMSHNCAIIPIGGGTSVTNALDTPETEKRAVISMDMALLDKILWIDRENLTCRAQAGI 211
Query: 154 IGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTAR 213
+GQ LER+LN +G+T GHEPDS EFS+LGGWV+TRASGMKKN YGNIEDL+V + V +
Sbjct: 212 VGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNFVCPK 271
Query: 214 GTLERPCRGPRVSSGPDFNHVILGSEA 240
G +++ C+ PR+SSGPD + +ILGSE
Sbjct: 272 GIIQKQCQVPRMSSGPDIHQIILGSEG 298
>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum
GN=eapA PE=1 SV=1
Length = 611
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 108/191 (56%), Gaps = 24/191 (12%)
Query: 67 RLIRAHGQTLYEVFSLRQTGLKRIPDVVVWP------------------VYITFGKYSEH 108
R+ G++L ++ +R +K PD++V P V I G
Sbjct: 117 RITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMG----- 171
Query: 109 SDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT 168
+ I +P N+ ++ +RR+N +LW+D + ACI+ GI+G +LE++L+ +G +
Sbjct: 172 GGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVS 231
Query: 169 SGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSG 228
GH+PDS+EFS+LGGW+AT +SG + + YG+IED+ V VT GTLE G R +G
Sbjct: 232 LGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLEL-RNGARSGAG 290
Query: 229 PDFNHVILGSE 239
++ H+ILGSE
Sbjct: 291 INYKHIILGSE 301
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 102/201 (50%), Gaps = 43/201 (21%)
Query: 67 RLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGKYSEHSDT----QISEKFD---- 118
RL G+ +++ +R+ + R PD V+ P + H D ++++K +
Sbjct: 106 RLTHIFGKNYRDLWRVRRGMIDRPPDAVILP--------NNHDDCVKIMELAQKHNVVVV 157
Query: 119 ---------------PAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELN 163
P + + ++ +RR+ +L +D ++ A E G++G D++ +L+
Sbjct: 158 PFGGGTNVTGGVEPNPFETRRMVISIDMRRMGRMLHIDTESGTAVFEVGVLGPDIDEQLS 217
Query: 164 SRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLE-----R 218
G+ GH+PDSY +S+LGGW+A R SG N YG+IE++++ + +VT G +E R
Sbjct: 218 RYGFMMGHDPDSYAYSTLGGWIAARGSGAMSNKYGDIENMILAMRVVTPVGVVETPLTSR 277
Query: 219 PCRGPRVSSGPDFNHVILGSE 239
PC G D N + +GSE
Sbjct: 278 PC-------GVDLNAMFVGSE 291
>sp|Q46911|YGCU_ECOLI Uncharacterized FAD-linked oxidoreductase YgcU OS=Escherichia coli
(strain K12) GN=ygcU PE=3 SV=4
Length = 484
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%)
Query: 134 VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMK 193
+N I+ +D +N+ A + G+ + LE L +GYT+GH P S + +GG VATR+ G
Sbjct: 105 MNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQF 164
Query: 194 KNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEA 240
LYG IED++V + V A GT+ R PR ++GPD H+I+G+E
Sbjct: 165 STLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEG 211
>sp|Q8X7S0|YGCU_ECO57 Uncharacterized FAD-linked oxidoreductase YgcU OS=Escherichia coli
O157:H7 GN=ygcU PE=3 SV=1
Length = 484
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 66/106 (62%)
Query: 134 VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMK 193
+N I+ +D +N+ A + G+ + LE L +GYT+GH P S + +GG VATR+ G
Sbjct: 105 MNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQF 164
Query: 194 KNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSE 239
LYG IED++V + V A GT+ R PR ++GPD H+I+G+E
Sbjct: 165 STLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNE 210
>sp|P94535|GLCD_BACSU Glycolate oxidase subunit GlcD OS=Bacillus subtilis (strain 168)
GN=glcD PE=3 SV=1
Length = 470
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASG 191
+ +N IL +DE+NL A ++ G+I D+ R + S+G +P S + S++GG + + G
Sbjct: 92 KHMNQILEIDEENLTATVQPGVITLDMIRAVESKGLFYPPDPSSMKISTIGGNINENSGG 151
Query: 192 MKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVS---SGPDFNHVILGSE 239
++ YG D ++ + +V A G + R G +++ +G D + +GSE
Sbjct: 152 LRGLKYGVTRDYVIGLEVVLANGDIIR--TGGKLAKDVAGYDLTRLFVGSE 200
>sp|Q12627|DLD1_KLULA D-lactate dehydrogenase [cytochrome], mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DLD1 PE=3
SV=2
Length = 576
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASG 191
+ +N I+ L++++L ++ G+ ++L LN G G +P + + G +A SG
Sbjct: 198 KYLNKIIQLNKEDLDVVVQGGVPWEELNEYLNDHGLLFGCDPGPG--AQIAGCIANSCSG 255
Query: 192 MKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSS-GPDFNHVILGSE 239
YG +++ +V +TM A GT+ + R PR SS G + N +I+GSE
Sbjct: 256 TNAYRYGTMKENVVNITMCMADGTIVKTKRRPRKSSAGYNLNGLIIGSE 304
>sp|P32891|DLD1_YEAST D-lactate dehydrogenase [cytochrome] 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=DLD1 PE=1 SV=2
Length = 587
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 134 VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMK 193
+N+++ D+ +L ++AG+ +DL L+ G G +P + +GG +A SG
Sbjct: 207 MNNVVKFDKLDLDITVQAGLPWEDLNDYLSDHGLMFGCDPGPG--AQIGGCIANSCSGTN 264
Query: 194 KNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSS-GPDFNHVILGSE 239
YG +++ ++ +T+V GT+ + + PR SS G + N + +GSE
Sbjct: 265 AYRYGTMKENIINMTIVLPDGTIVKTKKRPRKSSAGYNLNGLFVGSE 311
>sp|O23240|D2HDH_ARATH D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Arabidopsis
thaliana GN=D2HGDH PE=1 SV=3
Length = 559
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 129 VPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATR 188
V + +N IL DE + V EAG I ++L L+++G+ + + +GG V+T
Sbjct: 182 VNVGLMNKILSFDEVSGVLVCEAGCILENLATFLDTKGFIMPLDLGAKGSCHIGGNVSTN 241
Query: 189 ASGMKKNLYGNIEDLLVQVTMVTARG-TLERPCRGPRVSSGPDFNHVILGSEA 240
A G++ YG++ ++ + VTA G L+ + ++G D H+ +GSE
Sbjct: 242 AGGLRLIRYGSLHGTVLGLEAVTANGNVLDMLGTLRKDNTGYDLKHLFIGSEG 294
>sp|Q50685|Y2280_MYCTU Uncharacterized FAD-linked oxidoreductase Rv2280 OS=Mycobacterium
tuberculosis GN=Rv2280 PE=1 SV=1
Length = 459
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 133 RVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGM 192
R+N +L +D N VA ++ G+ DL+ G P SS+GG V T A GM
Sbjct: 92 RMNKVLEVDTANQVAVVQPGVALTDLDAATADTGLRYTVYPGELS-SSVGGNVGTNAGGM 150
Query: 193 KKNLYGNIEDLLVQVTMVTARGTLERP-CRGPRVSSGPDFNHVILGSE 239
+ YG ++ + V G + R R +VS+G D +I+GSE
Sbjct: 151 RAVKYGVARHNVLGLQAVLPTGEIIRTGGRMAKVSTGYDLTQLIIGSE 198
>sp|P77748|YDIJ_ECOLI Uncharacterized protein YdiJ OS=Escherichia coli (strain K12)
GN=ydiJ PE=4 SV=1
Length = 1018
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 22/168 (13%)
Query: 61 STQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWP-------VYITFGKYSEHSDTQI 113
+T DRL + ++Y++ +PD VV+P + +S
Sbjct: 32 ATSYADRLTMSTDNSIYQL----------LPDAVVFPRSTADVALIARLAAQERYSSLIF 81
Query: 114 SEKFDPAGNQTQISNVPI-----RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT 168
+ + G Q N I R +N I+ ++ + +EAG+I L + L GY
Sbjct: 82 TPRGGGTGTNGQALNQGIIVDMSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYF 141
Query: 169 SGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTL 216
E + ++LGG + T ASG +YG D ++ V V G +
Sbjct: 142 FAPELSTSNRATLGGMINTDASGQGSLVYGKTSDHVLGVRAVLLGGDI 189
>sp|Q7XI14|D2HDH_ORYSJ Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. japonica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 134 VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMK 193
++ I+ D N + EAG + ++L + ++G+ + + +GG ++T A G++
Sbjct: 188 MDKIITFDNVNGILTCEAGCVLENLSSYVENKGFIMPLDLGAKGSCHIGGNISTNAGGLR 247
Query: 194 KNLYGNIEDLLVQVTMVTARGT-LERPCRGPRVSSGPDFNHVILGSE 239
YG++ ++ + +V A GT L+ + ++G D H+ +GSE
Sbjct: 248 FIRYGSLHGSVLGLEVVLADGTVLDMLTTLRKDNTGYDLKHLFIGSE 294
>sp|B8B7X6|D2HDH_ORYSI Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Oryza
sativa subsp. indica GN=D2HGDH PE=3 SV=1
Length = 559
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 134 VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMK 193
++ I+ D N + EAG + ++L + ++G+ + + +GG ++T A G++
Sbjct: 188 MDKIITFDNVNGILTCEAGCVLENLSSYVENKGFIMPLDLGAKGSCHIGGNISTNAGGLR 247
Query: 194 KNLYGNIEDLLVQVTMVTARGT-LERPCRGPRVSSGPDFNHVILGSE 239
YG++ ++ + +V A GT L+ + ++G D H+ +GSE
Sbjct: 248 FIRYGSLHGSVLGLEVVLADGTVLDMLTTLRKDNTGYDLKHLFIGSE 294
>sp|Q94AX4|DLD_ARATH D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis
thaliana GN=DLD PE=1 SV=1
Length = 567
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 33/171 (19%)
Query: 90 IPDVVVWPVYITFGKYSEHSDTQISEKFD-------PAGNQTQISN---VP--------- 130
IPDVVV+P SE ++I + + P G T I P
Sbjct: 145 IPDVVVFP-------RSEEEVSKILKSCNEYKVPIVPYGGATSIEGHTLAPKGGVCIDMS 197
Query: 131 -IRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRA 189
++RV ++ D D +V E GI +L L G +P +S+GG ATR
Sbjct: 198 LMKRVKALHVEDMDVIV---EPGIGWLELNEYLEEYGLFFPLDPGPG--ASIGGMCATRC 252
Query: 190 SGMKKNLYGNIEDLLVQVTMVTARG-TLERPCRGPRVSSGPDFNHVILGSE 239
SG YG + D ++ + +V G ++ R + ++G D +I+GSE
Sbjct: 253 SGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLIIGSE 303
>sp|Q8N465|D2HDH_HUMAN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens
GN=D2HGDH PE=1 SV=3
Length = 521
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 133 RVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGM 192
R+N +L + + +AG + ++L R + R + + + +GG VAT A G+
Sbjct: 152 RMNRVLSFHSVSGILVCQAGCVLEELSRYVEERDFIMPLDLGAKGSCHIGGNVATNAGGL 211
Query: 193 KKNLYGNIEDLLVQVTMVTARGTLERPCRGPRV-SSGPDFNHVILGSE 239
+ YG++ ++ + +V A GT+ R ++G D + +GSE
Sbjct: 212 RFLRYGSLHGTVLGLEVVLADGTVLDCLTSLRKDNTGYDLKQLFIGSE 259
>sp|P84850|D2HDH_RAT D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=D2hgdh PE=3 SV=1
Length = 535
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 119 PAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF 178
P ++ +S + +V I + D ++ C +AG + ++L R + R + + +
Sbjct: 155 PVFDEVILSTALMNQV--ISFHDVSGILVC-QAGCVLEELSRYVQERDFIMPLDLGAKGS 211
Query: 179 SSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRV-SSGPDFNHVILG 237
+GG VAT A G++ YG++ ++ + +V A GT+ R ++G D + +G
Sbjct: 212 CHIGGNVATNAGGLRFLRYGSLRGTVLGLEVVLADGTILNCLTSLRKDNTGYDLKQMFIG 271
Query: 238 SE 239
SE
Sbjct: 272 SE 273
>sp|Q1JPD3|D2HDH_BOVIN D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus
GN=D2HGDH PE=2 SV=2
Length = 544
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 134 VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMK 193
+N +L + + V +AG + + L + + RG+ + + +GG VAT A G++
Sbjct: 176 MNQVLSFHDVSGVLVCQAGCVLEALSQYVEERGFIMPLDLGAKGSCHIGGNVATNAGGLR 235
Query: 194 KNLYGNIEDLLVQVTMVTARGTLERPCRGPRV-SSGPDFNHVILGSEA 240
YG++ ++ + +V A GT+ R ++G D + +GSE
Sbjct: 236 VLRYGSLRGTVLGLEVVLADGTVLNCLTSLRKDNTGYDLKQLFIGSEG 283
>sp|Q8CIM3|D2HDH_MOUSE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus
GN=D2hgdh PE=2 SV=3
Length = 535
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 119 PAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF 178
P ++ +S + +V I + D ++ C +AG + ++L R + R + + +
Sbjct: 155 PVFDEVILSTALMNQV--ISFHDVSGILVC-QAGCVLEELSRYVQERDFIMPLDLGAKGS 211
Query: 179 SSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRV-SSGPDFNHVILG 237
+GG VAT A G++ YG++ ++ + +V A GT+ R ++G D + +G
Sbjct: 212 CHIGGNVATNAGGLRFLRYGSLRGTVLGLEVVLADGTILNCLTSLRKDNTGYDLKQMFIG 271
Query: 238 SE 239
SE
Sbjct: 272 SE 273
>sp|Q86WU2|LDHD_HUMAN Probable D-lactate dehydrogenase, mitochondrial OS=Homo sapiens
GN=LDHD PE=1 SV=1
Length = 507
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 12/136 (8%)
Query: 91 PDVVVWPVYITFGKYSEHSDTQISEKFDPAGNQTQISN----------VPIRRVNSILWL 140
PD VVWP + + P G T + V + ++ IL L
Sbjct: 66 PDAVVWPQNVEQVSRLAALCYRQGVPIIPFGTGTGLEGGVCAVQGGVCVNLTHMDRILEL 125
Query: 141 DEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNI 200
++++ +E G+ + L L G +P + +SL G AT ASG YG +
Sbjct: 126 NQEDFSVVVEPGVTRKALNAHLRDSGLWFPVDPGAD--ASLCGMAATGASGTNAVRYGTM 183
Query: 201 EDLLVQVTMVTARGTL 216
D ++ + +V G L
Sbjct: 184 RDNVLNLEVVLPDGRL 199
>sp|Q57252|Y1163_HAEIN Uncharacterized protein HI_1163 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1163 PE=1 SV=1
Length = 1027
Score = 33.9 bits (76), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 65/166 (39%), Gaps = 16/166 (9%)
Query: 60 VSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGKYSEHSDTQISEKFDP 119
++T DRL A ++Y+ K + D+V +Y S F P
Sbjct: 31 IATNYADRLSLATDNSVYQQLPQAILFPKTVADIVRITKLANLPEYQSIS-------FTP 83
Query: 120 AG-----NQTQISNVPI----RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSG 170
G N I+N I R + +IL L+ ++AG++ L + L G
Sbjct: 84 RGGGTGTNGQSINNNIIVDLSRHMTAILELNVKERWVRVQAGVVKDQLNQFLKPHGLFFA 143
Query: 171 HEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTL 216
E + ++LGG + T ASG YG + ++ + V G +
Sbjct: 144 PELSTSNRATLGGMINTDASGQGSLQYGKTSNHVLALRAVLINGEI 189
>sp|P0ADM8|YIEE_ECOLI Uncharacterized protein YieE OS=Escherichia coli (strain K12)
GN=yieE PE=4 SV=2
Length = 249
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 146 VACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSS 180
VA G G D+E + +RG+ S H PD++ FSS
Sbjct: 91 VALTTEGECGLDMELQRATRGFHSPHAPDNHTFSS 125
>sp|P0ADM9|YIEE_ECOL6 Uncharacterized protein YieE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=yieE PE=4 SV=2
Length = 249
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 146 VACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSS 180
VA G G D+E + +RG+ S H PD++ FSS
Sbjct: 91 VALTTEGECGLDMELQRATRGFHSPHAPDNHTFSS 125
>sp|A1L258|D2HDH_DANRE D-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Danio rerio
GN=d2hgdh PE=2 SV=1
Length = 533
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 134 VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMK 193
+N + D + + +AG + ++L L R + + + +GG V+T A G++
Sbjct: 164 MNQVFAFDNISGILTCQAGCVLENLSHYLEERDFIMPLDLGAKGSCHIGGNVSTNAGGLR 223
Query: 194 KNLYGNIEDLLVQVTMVTARGTLERPCRGPRV-SSGPDFNHVILGSE 239
YG++ ++ + +V A G + R ++G D + +GSE
Sbjct: 224 LLRYGSLRGTVLGLEVVLADGHVLNCLATLRKDNTGYDLKQLFIGSE 270
>sp|Q752Y3|ALO_ASHGO D-arabinono-1,4-lactone oxidase OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ALO1
PE=3 SV=1
Length = 532
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 129 VPIRRVNSILWLDEDN----LVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGW 184
V + R+N +L L ED + AGI +L R L++RGY + S S+GG
Sbjct: 75 VNLDRLNGVLELQEDEQGRYADVTVAAGIRVYELHRYLSARGY-ALQNLGSISEQSVGGI 133
Query: 185 VATRASGMKKNLYGNIEDLLVQVTMVTARGTL 216
++T G +G + V +T+V RG L
Sbjct: 134 ISTGTHGSSP-YHGLVSSQYVNLTLVNGRGEL 164
>sp|Q2UDK7|BGLM_ASPOR Probable beta-glucosidase M OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=bglM PE=3 SV=1
Length = 768
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 126 ISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLEREL 162
I N IR VN+ W+D +N+ A I A + GQD R L
Sbjct: 527 IHNAGIRLVNN--WIDHENVTAVIFAHLPGQDSGRAL 561
>sp|B8N5S6|BGLM_ASPFN Probable beta-glucosidase M OS=Aspergillus flavus (strain ATCC
200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167)
GN=bglM PE=3 SV=1
Length = 768
Score = 31.2 bits (69), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 126 ISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLEREL 162
I N IR VN+ W+D +N+ A I A + GQD R L
Sbjct: 527 IHNAGIRLVNN--WIDHENVTAVIFAHLPGQDSGRAL 561
>sp|P58107|EPIPL_HUMAN Epiplakin OS=Homo sapiens GN=EPPK1 PE=1 SV=2
Length = 5090
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 148 CIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDL-LVQ 206
++ G++G++L +L + PD Y +SL W A M+K L E L L+Q
Sbjct: 1303 AVKVGLVGRELSEQLGQAERAAAGYPDPYSRASLSLWQA-----MEKGLVPQNEGLPLLQ 1357
Query: 207 VTMVT 211
V + T
Sbjct: 1358 VQLAT 1362
>sp|Q7TNG8|LDHD_MOUSE Probable D-lactate dehydrogenase, mitochondrial OS=Mus musculus
GN=Ldhd PE=1 SV=1
Length = 484
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 129 VPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATR 188
+ + ++ I L+ ++ +E G+ + L L G +P + +SL G AT
Sbjct: 114 INLTHMDQITELNTEDFSVVVEPGVTRKALNTHLRDSGLWFPVDPGAD--ASLCGMAATG 171
Query: 189 ASGMKKNLYGNIEDLLVQVTMVTARGTL 216
ASG YG + D ++ + +V G L
Sbjct: 172 ASGTNAVRYGTMRDNVINLEVVLPDGRL 199
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,803,407
Number of Sequences: 539616
Number of extensions: 3617290
Number of successful extensions: 7197
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7165
Number of HSP's gapped (non-prelim): 44
length of query: 241
length of database: 191,569,459
effective HSP length: 114
effective length of query: 127
effective length of database: 130,053,235
effective search space: 16516760845
effective search space used: 16516760845
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)