Query psy4131
Match_columns 241
No_of_seqs 230 out of 1921
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:43:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11230 glycolate oxidase sub 100.0 4.9E-35 1.1E-39 280.3 17.7 182 43-241 15-216 (499)
2 PLN02805 D-lactate dehydrogena 100.0 4.9E-34 1.1E-38 275.9 17.6 180 45-241 94-293 (555)
3 COG0277 GlcD FAD/FMN-containin 100.0 5.2E-33 1.1E-37 261.3 13.8 170 53-241 2-192 (459)
4 PRK11183 D-lactate dehydrogena 100.0 4.1E-32 8.9E-37 258.3 12.4 178 47-241 3-252 (564)
5 KOG1232|consensus 100.0 6.7E-32 1.5E-36 244.6 7.3 198 27-241 30-251 (511)
6 KOG1233|consensus 100.0 8.8E-30 1.9E-34 231.6 12.1 192 45-241 115-325 (613)
7 TIGR00387 glcD glycolate oxida 100.0 2.5E-29 5.4E-34 235.9 12.8 135 99-241 24-159 (413)
8 PRK11282 glcE glycolate oxidas 99.9 3.5E-26 7.5E-31 210.4 13.0 133 99-241 21-155 (352)
9 PLN02441 cytokinin dehydrogena 99.9 2.1E-25 4.5E-30 214.0 15.3 162 57-241 40-227 (525)
10 PF01565 FAD_binding_4: FAD bi 99.9 1.7E-25 3.7E-30 179.1 10.0 113 99-220 27-139 (139)
11 TIGR01679 bact_FAD_ox FAD-link 99.9 4E-23 8.6E-28 194.4 12.6 141 85-241 6-161 (419)
12 TIGR01676 GLDHase galactonolac 99.9 6.3E-23 1.4E-27 197.1 13.5 141 85-241 56-214 (541)
13 KOG1231|consensus 99.9 3E-22 6.5E-27 185.3 13.2 159 59-241 41-224 (505)
14 TIGR01678 FAD_lactone_ox sugar 99.9 3.5E-22 7.6E-27 188.9 13.9 141 85-241 9-167 (438)
15 TIGR01677 pln_FAD_oxido plant- 99.9 4.2E-21 9.1E-26 186.0 14.9 151 80-241 21-197 (557)
16 PLN02465 L-galactono-1,4-lacto 99.8 4.6E-19 1E-23 171.6 14.3 142 84-241 90-249 (573)
17 PRK14652 UDP-N-acetylenolpyruv 99.6 2.2E-15 4.7E-20 136.5 12.6 160 45-238 2-181 (302)
18 PRK13906 murB UDP-N-acetylenol 99.6 1.9E-15 4.2E-20 137.1 12.3 146 46-221 3-168 (307)
19 PRK12436 UDP-N-acetylenolpyruv 99.6 6.4E-15 1.4E-19 133.6 11.6 143 48-221 5-168 (305)
20 PRK13905 murB UDP-N-acetylenol 99.5 3.5E-14 7.5E-19 128.3 10.1 117 87-221 27-163 (298)
21 TIGR00179 murB UDP-N-acetyleno 99.5 6.5E-14 1.4E-18 125.9 9.6 113 88-221 10-145 (284)
22 KOG4730|consensus 99.5 6.7E-14 1.5E-18 130.3 8.7 112 99-221 76-187 (518)
23 PRK14653 UDP-N-acetylenolpyruv 99.3 1.7E-11 3.6E-16 110.9 11.8 115 99-239 59-178 (297)
24 KOG1262|consensus 99.2 4.1E-12 8.9E-17 116.7 3.8 119 88-220 78-196 (543)
25 PRK14649 UDP-N-acetylenolpyruv 99.2 1E-10 2.2E-15 105.8 9.8 107 99-220 47-154 (295)
26 PRK13903 murB UDP-N-acetylenol 99.1 5.1E-10 1.1E-14 103.8 10.8 118 87-220 29-165 (363)
27 PRK14650 UDP-N-acetylenolpyruv 98.8 3.9E-08 8.4E-13 89.2 9.7 106 99-220 59-164 (302)
28 COG0812 MurB UDP-N-acetylmuram 98.7 7.9E-08 1.7E-12 86.5 10.6 103 99-220 47-153 (291)
29 PRK00046 murB UDP-N-acetylenol 98.7 9.8E-08 2.1E-12 87.7 8.9 105 99-220 47-155 (334)
30 PRK14648 UDP-N-acetylenolpyruv 98.6 2.8E-07 6.1E-12 85.1 9.2 97 99-210 56-155 (354)
31 PRK14651 UDP-N-acetylenolpyruv 98.4 1.1E-06 2.3E-11 78.8 8.6 101 99-220 40-141 (273)
32 PRK13904 murB UDP-N-acetylenol 98.2 8.6E-06 1.9E-10 72.4 8.6 95 99-211 34-128 (257)
33 PRK09799 putative oxidoreducta 92.5 0.2 4.3E-06 44.5 4.8 80 100-189 26-111 (258)
34 PF00941 FAD_binding_5: FAD bi 92.3 0.047 1E-06 45.4 0.4 84 99-189 24-116 (171)
35 TIGR02963 xanthine_xdhA xanthi 91.6 0.23 5E-06 47.9 4.4 84 99-189 214-304 (467)
36 TIGR03312 Se_sel_red_FAD proba 90.9 0.35 7.6E-06 43.0 4.6 80 100-189 25-110 (257)
37 PRK09971 xanthine dehydrogenas 88.2 0.45 9.7E-06 43.0 3.2 84 99-189 26-119 (291)
38 TIGR03199 pucC xanthine dehydr 86.3 0.48 1E-05 42.1 2.2 84 100-188 18-109 (264)
39 TIGR03195 4hydrxCoA_B 4-hydrox 84.7 0.67 1.5E-05 42.6 2.4 83 100-188 27-117 (321)
40 PLN02906 xanthine dehydrogenas 82.9 1.9 4E-05 46.9 5.2 85 99-189 250-351 (1319)
41 PLN00192 aldehyde oxidase 76.9 2.2 4.7E-05 46.5 3.3 83 99-189 259-353 (1344)
42 TIGR02969 mam_aldehyde_ox alde 76.5 3.4 7.3E-05 45.0 4.6 85 99-189 258-359 (1330)
43 COG4630 XdhA Xanthine dehydrog 64.6 4.6 9.9E-05 38.2 2.1 84 128-218 248-340 (493)
44 COG1319 CoxM Aerobic-type carb 46.0 28 0.00061 31.5 4.0 85 99-190 25-119 (284)
45 PF03471 CorC_HlyC: Transporte 27.4 82 0.0018 22.4 3.2 40 144-190 5-44 (81)
46 cd01760 RBD Ubiquitin-like dom 25.3 89 0.0019 22.3 3.0 26 143-168 10-36 (72)
47 PF00403 HMA: Heavy-metal-asso 24.3 1.2E+02 0.0026 19.9 3.5 29 139-167 30-61 (62)
48 KOG4656|consensus 22.3 1E+02 0.0022 26.9 3.3 35 133-168 33-67 (247)
49 smart00455 RBD Raf-like Ras-bi 21.5 1.1E+02 0.0024 21.5 2.9 25 144-168 11-36 (70)
No 1
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=4.9e-35 Score=280.28 Aligned_cols=182 Identities=21% Similarity=0.196 Sum_probs=166.4
Q ss_pred cCCCHHHHHHHHh-cC-CceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEE
Q psy4131 43 IKLGSEVLSLLEA-TN-VSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITF 102 (241)
Q Consensus 43 ~~~~~~~~~~L~~-vg-~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~r 102 (241)
.+.+++++++|++ +| ++|++|++++..|++|.+. .+...|.+||+|+ |+||
T Consensus 15 ~~~~~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~---------~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~r 85 (499)
T PRK11230 15 DVDRTSLLMALREHLPGLEILHTDEELIPYECDGLS---------AYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVAR 85 (499)
T ss_pred cccHHHHHHHHHHhcCcceEEcCHHHHHHhccCccc---------ccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3456789999999 98 5899999999999999632 2567899999999 9999
Q ss_pred cCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceeh
Q psy4131 103 GKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLG 182 (241)
Q Consensus 103 G~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIG 182 (241)
|+| |++.|+++|..+ +|+|||++||+|+++|+++.+|+||||+++.+|+++|+++|++++++|++...+|||
T Consensus 86 G~G-----t~~~gg~~~~~~---gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvG 157 (499)
T PRK11230 86 GAG-----TGLSGGALPLEK---GVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIG 157 (499)
T ss_pred CCC-----cCcCCCcccCCC---cEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEc
Confidence 999 999999888654 599999999999999999999999999999999999999999999999888889999
Q ss_pred hhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcCCCCCCCcCCCcccccccCCCC
Q psy4131 183 GWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 183 G~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~~G~dl~~l~~GseGt 241 (241)
|++++|++|+.+.+||.++|+|+++|||++||++++++...++..||||.++|+|||||
T Consensus 158 G~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs~Gt 216 (499)
T PRK11230 158 GNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGSEGM 216 (499)
T ss_pred ceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccCCCc
Confidence 99999999999999999999999999999999999988666667899999999999997
No 2
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=4.9e-34 Score=275.86 Aligned_cols=180 Identities=23% Similarity=0.379 Sum_probs=161.4
Q ss_pred CCHHHHHHHHh-cCCceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEEcCC
Q psy4131 45 LGSEVLSLLEA-TNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITFGKY 105 (241)
Q Consensus 45 ~~~~~~~~L~~-vg~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~rG~G 105 (241)
+.++++++|++ ++++|++|+.++..|++|+..+ . .....|.+||+|+ |+|||+|
T Consensus 94 ~~~~~~~~L~~~l~~~v~~~~~~~~~y~~d~~~~--~-----~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgG 166 (555)
T PLN02805 94 VPQELIDELKAILQDNMTLDYDERYFHGKPQNSF--H-----KAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGA 166 (555)
T ss_pred chHHHHHHHHHhcCCceecCHHHHHHhccCcccc--c-----ccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCC
Confidence 45788999999 9878999999999999986421 0 0125799999999 9999999
Q ss_pred CCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhh
Q psy4131 106 SEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWV 185 (241)
Q Consensus 106 ~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~i 185 (241)
|++.|++++..+ +|+|||++||+|+++|+++.+|+||||+++.+|+++|+++|+++|++|++ .+||||++
T Consensus 167 -----ts~~G~~~~~~g---givIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~--~~TIGG~i 236 (555)
T PLN02805 167 -----TSIEGHTLAPHG---GVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGP--GATIGGMC 236 (555)
T ss_pred -----CCCCCCccCCCC---EEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCcc--ccChhhHh
Confidence 999999876543 69999999999999999999999999999999999999999999999874 48999999
Q ss_pred ccCCCCCCCCccccccccEeEEEEEecCCcEEEcC-CCCCCCcCCCcccccccCCCC
Q psy4131 186 ATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC-RGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 186 a~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~-~~~k~~~G~dl~~l~~GseGt 241 (241)
++|++|..+.+||.++|+|+++|||+|||++++++ +..|+..||||.++|+|||||
T Consensus 237 a~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGt 293 (555)
T PLN02805 237 ATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGT 293 (555)
T ss_pred hCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCc
Confidence 99999999999999999999999999999999875 456788999999999999997
No 3
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.2e-33 Score=261.25 Aligned_cols=170 Identities=27% Similarity=0.392 Sum_probs=156.7
Q ss_pred HHh-cC-CceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEEcCCCCCCCCC
Q psy4131 53 LEA-TN-VSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITFGKYSEHSDTQ 112 (241)
Q Consensus 53 L~~-vg-~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~rG~G~~~~~t~ 112 (241)
|++ ++ ..+.+++..+..|..|++. +...|.+|++|+ |+|||+| |+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~~----------~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~g-----ts 66 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDASV----------YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGG-----TS 66 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcch----------hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCC-----CC
Confidence 345 66 4689999999999999762 567888999998 9999999 99
Q ss_pred CCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCC
Q psy4131 113 ISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGM 192 (241)
Q Consensus 113 ~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~ 192 (241)
+.|+++|. + +|+|||++||+|+++|+++.+|+||||+++.+|+++|+++|+++|++|++...+||||++++|++|.
T Consensus 67 ~~g~~~~~-~---gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~ 142 (459)
T COG0277 67 LSGGAVPD-G---GVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGL 142 (459)
T ss_pred ccccccCC-C---cEEEEchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCc
Confidence 99999987 4 5999999999999999999999999999999999999999999999999877899999999999999
Q ss_pred CCCccccccccEeEEEEEecCCcEEEcCC-CCCCCcCCCcccccccCCCC
Q psy4131 193 KKNLYGNIEDLLVQVTMVTARGTLERPCR-GPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 193 ~s~~yG~~~d~V~~levVl~dG~i~~~~~-~~k~~~G~dl~~l~~GseGt 241 (241)
.+.+||.++|+|+++++|+|||+++++++ ..|+.+||||.++|+|||||
T Consensus 143 ~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~Gt 192 (459)
T COG0277 143 RSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFVGSEGT 192 (459)
T ss_pred cceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhcccCCcc
Confidence 99999999999999999999999999765 57799999999999999997
No 4
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.97 E-value=4.1e-32 Score=258.28 Aligned_cols=178 Identities=17% Similarity=0.127 Sum_probs=156.9
Q ss_pred HHHHHHHHh-cC-CceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEEcCCC
Q psy4131 47 SEVLSLLEA-TN-VSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITFGKYS 106 (241)
Q Consensus 47 ~~~~~~L~~-vg-~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~rG~G~ 106 (241)
++++++|++ +| ++|++|+.++..|++|+.. ....|.+||+|+ |+|||+|
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r~----------~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgG- 71 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFRS----------GQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAAN- 71 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCccc----------cCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCC-
Confidence 578999999 98 6999999999999999642 466899999999 9999999
Q ss_pred CCCCCCCCCccccCCC--CCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCC-CCCceehh
Q psy4131 107 EHSDTQISEKFDPAGN--QTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDS-YEFSSLGG 183 (241)
Q Consensus 107 ~~~~t~~~G~~~~~~~--g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s-~~~~tIGG 183 (241)
|++.|+++|..+ .+++|+|||+|||+|++|| ++.+++||||+++.+|+++|+++|++++.+|+| ...+||||
T Consensus 72 ----TGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGG 146 (564)
T PRK11183 72 ----TGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIG 146 (564)
T ss_pred ----cccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCcc
Confidence 999999999643 1347999999999999999 568999999999999999999999998877744 34578999
Q ss_pred hhccCCCCCCCCccccccccEeEEEEEecCCcE-------EEcCCCC---C---CCcCC---------------------
Q psy4131 184 WVATRASGMKKNLYGNIEDLLVQVTMVTARGTL-------ERPCRGP---R---VSSGP--------------------- 229 (241)
Q Consensus 184 ~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i-------~~~~~~~---k---~~~G~--------------------- 229 (241)
+|++|++|....+||.+.++++. ++|+++|++ ++.++.+ + ...||
T Consensus 147 nIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~v 225 (564)
T PRK11183 147 GICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERV 225 (564)
T ss_pred ceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhh
Confidence 99999999999999999999999 999999999 6656555 2 57899
Q ss_pred -------------Cccccc--ccCCCC
Q psy4131 230 -------------DFNHVI--LGSEAD 241 (241)
Q Consensus 230 -------------dl~~l~--~GseGt 241 (241)
|+++|| +|||||
T Consensus 226 r~v~~~~parfnaDl~~LfeasGseGk 252 (564)
T PRK11183 226 RDVDADTPARFNADPRRLFEASGCAGK 252 (564)
T ss_pred hccCCCCcccccCCHHHHhhccCCCce
Confidence 999999 999997
No 5
>KOG1232|consensus
Probab=99.97 E-value=6.7e-32 Score=244.57 Aligned_cols=198 Identities=21% Similarity=0.239 Sum_probs=175.9
Q ss_pred cccccccCcchhhc-c-ccC-CCHHHHHHHHh-cC-CceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce---
Q psy4131 27 GWEQSYCSKIKLIC-L-GIK-LGSEVLSLLEA-TN-VSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV--- 98 (241)
Q Consensus 27 ~~~~~~~~~~~~~~-~-~~~-~~~~~~~~L~~-vg-~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~--- 98 (241)
+..+....+++..+ . .++ ++++.++.+++ +| +.+++|++++..|..||.- .++..-..|.+|+
T Consensus 30 ~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~---------kyrG~sklvL~Pkst~ 100 (511)
T KOG1232|consen 30 IRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMK---------KYRGQSKLVLKPKSTE 100 (511)
T ss_pred eecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHH---------hccCCceEEecCCCHH
Confidence 45555555555544 4 244 89999999999 99 5899999999999999752 4666777777777
Q ss_pred ---------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHH
Q psy4131 99 ---------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELN 163 (241)
Q Consensus 99 ---------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~ 163 (241)
|+|+||. |++.|+++|..+. |+|+|.+||+|+++|+-.+++++++|+.+.++..+|+
T Consensus 101 eVS~ILkYCn~~kLAVVPQGGN-----TgLVGgSVPvfDE---iVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~ 172 (511)
T KOG1232|consen 101 EVSAILKYCNDRKLAVVPQGGN-----TGLVGGSVPVFDE---IVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLA 172 (511)
T ss_pred HHHHHHHhhccccEEEecCCCC-----cccccCcccchHH---HhhhhhhhccccccccccceEEeccceEehhhHHHHH
Confidence 9999999 9999999998763 9999999999999999999999999999999999999
Q ss_pred HcCCceeccCCCCCCceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEc-CCCCCCCcCCCcccccccCCCC
Q psy4131 164 SRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERP-CRGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 164 ~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~-~~~~k~~~G~dl~~l~~GseGt 241 (241)
++|+.||.+-++-.+|-|||++++|++|..-.+||...-+|+++|+|+|+|+++.. +...|+.+||||+|||||||||
T Consensus 173 e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGt 251 (511)
T KOG1232|consen 173 EKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGT 251 (511)
T ss_pred hcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCce
Confidence 99999999988888899999999999999999999999999999999999999984 4568999999999999999997
No 6
>KOG1233|consensus
Probab=99.96 E-value=8.8e-30 Score=231.60 Aligned_cols=192 Identities=52% Similarity=0.922 Sum_probs=175.3
Q ss_pred CCHHHHHHHHhcCCceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEEcCCC
Q psy4131 45 LGSEVLSLLEATNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITFGKYS 106 (241)
Q Consensus 45 ~~~~~~~~L~~vg~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~rG~G~ 106 (241)
.++.++..|++..-..+....+|....|+...++++.+|.+.+..+|+.||+|+ ++|.|||
T Consensus 115 eNedflh~Lket~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGG- 193 (613)
T KOG1233|consen 115 ENEDFLHFLKETKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGG- 193 (613)
T ss_pred cchHHHHHHHhccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCc-
Confidence 588999999963224455566777778999999999999999999999999999 9999999
Q ss_pred CCCCCCCCCcc-ccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhh
Q psy4131 107 EHSDTQISEKF-DPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWV 185 (241)
Q Consensus 107 ~~~~t~~~G~~-~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~i 185 (241)
|+++++. +|.+..+..+.+|++.||+||.+|.++.++++|+|++..+|.+.|++.|++.++.|.|...+|+||++
T Consensus 194 ----TSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWV 269 (613)
T KOG1233|consen 194 ----TSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWV 269 (613)
T ss_pred ----ccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeeccccee
Confidence 9998887 67666555566899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccccEeEEEEEecCCcEEEcCCCCCCCcCCCcccccccCCCC
Q psy4131 186 ATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 186 a~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~~G~dl~~l~~GseGt 241 (241)
++.+.|+.-.+||++.|.|.-+++|+|.|.+-+-.+.|+-++|||+.++++|||||
T Consensus 270 sTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~GPDihh~IlGSEGT 325 (613)
T KOG1233|consen 270 STRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSGPDIHHIILGSEGT 325 (613)
T ss_pred eeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCCCCcceEEeccCcc
Confidence 99999999999999999999999999999999888889999999999999999998
No 7
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.96 E-value=2.5e-29 Score=235.85 Aligned_cols=135 Identities=27% Similarity=0.359 Sum_probs=127.0
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF 178 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~ 178 (241)
|+|||+| ||+.|++++..+ +|+|||++||+|+++|+++.+++||||+++.+|+++|+++|+++|++|++...
T Consensus 24 v~~~G~G-----t~~~g~~~~~~~---~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~~~gl~~~~~p~s~~~ 95 (413)
T TIGR00387 24 IVPRGAG-----TGLSGGALPEEG---GLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVEEHNLFYPPDPSSQIS 95 (413)
T ss_pred EEEECCC-----CCCCCCccCCCC---eEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCccccc
Confidence 9999999 999998887643 69999999999999999999999999999999999999999999999998888
Q ss_pred ceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcCC-CCCCCcCCCcccccccCCCC
Q psy4131 179 SSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCR-GPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 179 ~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~-~~k~~~G~dl~~l~~GseGt 241 (241)
+||||++++|++|..+.+||.++|+|+++|||+|||+++++++ ..|+..||||.++|+|||||
T Consensus 96 ~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gt 159 (413)
T TIGR00387 96 STIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGT 159 (413)
T ss_pred ceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCcc
Confidence 9999999999999999999999999999999999999999764 56889999999999999997
No 8
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.94 E-value=3.5e-26 Score=210.44 Aligned_cols=133 Identities=23% Similarity=0.244 Sum_probs=118.3
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCC-
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYE- 177 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~- 177 (241)
|+|+|+| |+...+. +.. +++|||++||+|+++|+++.+|+||||+++.+|+++|+++|+.+|.+|....
T Consensus 21 v~~~GgG-----t~~~~g~-~~~----~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~lp~~p~~~~~ 90 (352)
T PRK11282 21 LRIRGGG-----SKDFYGR-ALA----GEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQMLPFEPPHFGG 90 (352)
T ss_pred EEEECCC-----CCCCCCC-CCC----CeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCeeCCCCCCcCC
Confidence 8999999 7543333 332 4799999999999999999999999999999999999999999998765433
Q ss_pred CceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcC-CCCCCCcCCCcccccccCCCC
Q psy4131 178 FSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC-RGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 178 ~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~-~~~k~~~G~dl~~l~~GseGt 241 (241)
.+||||++++|++|+.+.+||..+|+|+++|+|++||++++++ +..|+.+||||.++|+||+||
T Consensus 91 ~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~Gt 155 (352)
T PRK11282 91 GATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGT 155 (352)
T ss_pred CcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCch
Confidence 4899999999999999999999999999999999999999976 456899999999999999997
No 9
>PLN02441 cytokinin dehydrogenase
Probab=99.93 E-value=2.1e-25 Score=214.04 Aligned_cols=162 Identities=13% Similarity=0.173 Sum_probs=143.6
Q ss_pred CCceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce--------------------EEEEcCCCCCCCCCCCCc
Q psy4131 57 NVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV--------------------YITFGKYSEHSDTQISEK 116 (241)
Q Consensus 57 g~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~--------------------v~~rG~G~~~~~t~~~G~ 116 (241)
+..|++|+.++..|++|++. .+...|.+|++|+ |.+||+| |++.|+
T Consensus 40 ~~~v~~d~~~~~~~s~d~g~---------~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgG-----HS~~G~ 105 (525)
T PLN02441 40 DGHLSFDPVSTASASKDFGN---------LVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHG-----HSLNGQ 105 (525)
T ss_pred CceEEeCHHHHHHHhcCccc---------ccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCC-----cCCCCC
Confidence 56899999999999999763 3567899999999 8999999 999988
Q ss_pred cccCCCCCceEEEEcCCCCC------eeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCC
Q psy4131 117 FDPAGNQTQISNVPIRRVNS------ILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRAS 190 (241)
Q Consensus 117 ~~~~~~g~~gvvIdl~rmn~------Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~ 190 (241)
+.+. ++|+|||++||+ ++++|.+..+|+|+||++|.++.+++.++|+..+ .+.....+||||.+++++.
T Consensus 106 a~~~----~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~-~~~d~~~~TVGG~ist~G~ 180 (525)
T PLN02441 106 AQAP----GGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPR-SWTDYLYLTVGGTLSNAGI 180 (525)
T ss_pred ccCC----CeEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccC-CccccCceEEeEEcCCCCc
Confidence 8763 269999999999 6789999999999999999999999999998744 4555566899999999998
Q ss_pred CCCCCccccccccEeEEEEEecCCcEEEcCCCCCCCcCCCcccccccCCCC
Q psy4131 191 GMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 191 G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~~G~dl~~l~~GseGt 241 (241)
|..+.+||...|+|+++|||+++|+++++++ ..++||.++++|++|+
T Consensus 181 gg~s~ryG~~~d~Vl~leVVtadGevv~~s~----~~n~DLF~Av~GglG~ 227 (525)
T PLN02441 181 SGQAFRHGPQISNVLELDVVTGKGEVVTCSP----TQNSDLFFAVLGGLGQ 227 (525)
T ss_pred cccccccCcHHHhEEEEEEEeCCceEEEeCC----CCChhHHHhhccCCCC
Confidence 8899999999999999999999999999874 4679999999999986
No 10
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.93 E-value=1.7e-25 Score=179.13 Aligned_cols=113 Identities=25% Similarity=0.278 Sum_probs=103.4
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF 178 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~ 178 (241)
+.++|+| |++.+.+... ++++|||++||+|+++|+++.+++||||++|.||+++|+++|+.++..|.+...
T Consensus 27 v~~~g~G-----~~~~~~~~~~----~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~~~~~~~ 97 (139)
T PF01565_consen 27 VRVRGGG-----HSWTGQSSDE----GGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYEALAPRGLMLPVEPGSGIP 97 (139)
T ss_dssp EEEESSS-----TTSSSTTSST----TEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHHHHHHHTEEESSGGGSTTT
T ss_pred EEEEcCC-----CCcccccccC----CcEEEeeccccccccccccceeEEEeccccchhccccccccccccccccccccc
Confidence 9999999 9988766522 379999999999989999999999999999999999999999999987777777
Q ss_pred ceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcC
Q psy4131 179 SSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC 220 (241)
Q Consensus 179 ~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~ 220 (241)
++|||++++|++|+.+.+||...|+|+++|+|++||++++++
T Consensus 98 ~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 98 GTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp SBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 899999999999999999999999999999999999999864
No 11
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.89 E-value=4e-23 Score=194.40 Aligned_cols=141 Identities=18% Similarity=0.217 Sum_probs=123.5
Q ss_pred CCccCCCceEEcce---------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEe
Q psy4131 85 TGLKRIPDVVVWPV---------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACI 149 (241)
Q Consensus 85 ~~~~~~P~aVv~P~---------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~V 149 (241)
+.....|.+|++|+ |+++|+| |++.+.+.. ++++|||++||+|+++|+++.+|+|
T Consensus 6 ~~~~~~p~~v~~P~s~~ev~~~v~~a~~~v~~~G~G-----hs~~~~~~~-----~g~~idl~~l~~i~~~d~~~~~v~v 75 (419)
T TIGR01679 6 GEQVAAPSAIVRPTDEGELADVIAQAAKPVRAVGSG-----HSFTDLACT-----DGTMISLTGLQGVVDVDQPTGLATV 75 (419)
T ss_pred CCccCCCCeEECCCCHHHHHHHHHHhCCCEEEEeCC-----CCCCCcccC-----CCEEEEhhHcCCceeecCCCCEEEE
Confidence 34566788999998 8999999 887654432 2599999999999999999999999
Q ss_pred CccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcCCCCCCCcCC
Q psy4131 150 EAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGP 229 (241)
Q Consensus 150 eaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~~G~ 229 (241)
|||+++.+|.+.|+++|+.+|..|+. ...||||+++++++|.+ .+||..+|+|+++|||++||+++++++ ...|
T Consensus 76 ~aG~~l~~l~~~L~~~G~~l~~~~~~-~~~tvGG~ia~~~hG~g-~~~G~~~d~V~~l~vV~a~G~v~~~~~----~~~~ 149 (419)
T TIGR01679 76 EAGTRLGALGPQLAQRGLGLENQGDI-DPQSIGGALGTATHGTG-VRFQALHARIVSLRLVTAGGKVLDLSE----GDDQ 149 (419)
T ss_pred cCCCCHHHHHHHHHHcCCccccCCCC-CCceeccceecCCCCCC-ccCCchhhhEEEEEEEcCCCCEEEEcC----CCCH
Confidence 99999999999999999999876654 45799999999999975 689999999999999999999999875 4579
Q ss_pred CcccccccCCCC
Q psy4131 230 DFNHVILGSEAD 241 (241)
Q Consensus 230 dl~~l~~GseGt 241 (241)
||.+.++|++|+
T Consensus 150 dLf~a~~g~~G~ 161 (419)
T TIGR01679 150 DMYLAARVSLGA 161 (419)
T ss_pred HHHHHHHhCCCc
Confidence 999999999985
No 12
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=99.89 E-value=6.3e-23 Score=197.12 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=125.1
Q ss_pred CCccCCCceEEcce------------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCe
Q psy4131 85 TGLKRIPDVVVWPV------------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLV 146 (241)
Q Consensus 85 ~~~~~~P~aVv~P~------------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~ 146 (241)
+.....|..+++|+ |+|+|+| |++.+.+.+. +.+|||++||+|+++|+++++
T Consensus 56 g~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsG-----hS~sg~a~t~-----g~lldL~~ln~Vl~vD~~~~t 125 (541)
T TIGR01676 56 GTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSG-----LSPNGIGLSR-----AGMVNLALMDKVLEVDEEKKR 125 (541)
T ss_pred CccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCC-----cCCCCcccCC-----CeEEEhhhCCCCEEEcCCCCE
Confidence 45667899999998 9999999 8888777653 357999999999999999999
Q ss_pred EEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcCCCCCCC
Q psy4131 147 ACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVS 226 (241)
Q Consensus 147 v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~ 226 (241)
|+||||+++.+|.++|+++|+.++..| +...+||||+++++++|.+ .+||.++|+|+++++|+++|+++++++ .
T Consensus 126 VtV~AG~~l~~L~~~L~~~Glal~n~g-si~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~----~ 199 (541)
T TIGR01676 126 VRVQAGIRVQQLVDAIKEYGITLQNFA-SIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISK----D 199 (541)
T ss_pred EEEcCCCCHHHHHHHHHHcCCEeccCC-CCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECC----C
Confidence 999999999999999999999998644 5567999999999999986 589999999999999999999999874 3
Q ss_pred cCCCcccccccCCCC
Q psy4131 227 SGPDFNHVILGSEAD 241 (241)
Q Consensus 227 ~G~dl~~l~~GseGt 241 (241)
..+||..++.|+.|+
T Consensus 200 ~~pdLF~AargslG~ 214 (541)
T TIGR01676 200 KDPELFFLARCGLGG 214 (541)
T ss_pred CCHHHHHHHhcCCCc
Confidence 468999999999985
No 13
>KOG1231|consensus
Probab=99.88 E-value=3e-22 Score=185.28 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=135.9
Q ss_pred ceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce--------------------EEEEcCCCCCCCCCCCCccc
Q psy4131 59 SVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV--------------------YITFGKYSEHSDTQISEKFD 118 (241)
Q Consensus 59 ~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~--------------------v~~rG~G~~~~~t~~~G~~~ 118 (241)
.+.+++.....-++|+.. .++..|.+|.+|+ |+|||+| |++.|++.
T Consensus 41 ~~~~~~~~~a~~s~dFg~---------~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~G-----hSl~Gqa~ 106 (505)
T KOG1231|consen 41 TLESDPSSVAHASTDFGN---------RTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGG-----HSLEGQAL 106 (505)
T ss_pred eeeccchhhhhhhhhccc---------cCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCc-----ccccCccc
Confidence 566666555445566542 3688999999999 9999999 99999998
Q ss_pred cCCCCCceEEE--EcC-CCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCC--ceeccCCCCCCceehhhhccCCCCCC
Q psy4131 119 PAGNQTQISNV--PIR-RVNSILWLDEDNLVACIEAGIIGQDLERELNSRGY--TSGHEPDSYEFSSLGGWVATRASGMK 193 (241)
Q Consensus 119 ~~~~g~~gvvI--dl~-rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl--~~~~~p~s~~~~tIGG~ia~~g~G~~ 193 (241)
+..+ |++| |++ .|+++-.+..++.+|.|+||..|-+|++++.++|| .++.||.- .||||.+++.+.|..
T Consensus 107 a~~~---GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~---ltVGGtlsnagiggq 180 (505)
T KOG1231|consen 107 ATRG---GVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP---LTVGGTLSNAGIGGQ 180 (505)
T ss_pred cCCC---CeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc---eeecceeccCccccc
Confidence 7443 5555 454 57777677888899999999999999999999999 77777763 799999999999999
Q ss_pred CCccccccccEeEEEEEecCCcEEEcCCCCCCCcCCCcccccccCCCC
Q psy4131 194 KNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 194 s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~~G~dl~~l~~GseGt 241 (241)
+.+||...+||++++|||++||+++|++ -.|++|+.+|+|+|||
T Consensus 181 afRyGpqi~NV~~LdVVtgkGeiv~cs~----r~n~~lf~~vlGglGq 224 (505)
T KOG1231|consen 181 AFRYGPQISNVIELDVVTGKGEIVTCSK----RANSNLFFLVLGGLGQ 224 (505)
T ss_pred eeeccchhhceEEEEEEcCCCcEEeccc----ccCceeeeeeeccCcc
Confidence 9999999999999999999999999975 3899999999999997
No 14
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=99.88 E-value=3.5e-22 Score=188.94 Aligned_cols=141 Identities=21% Similarity=0.215 Sum_probs=123.7
Q ss_pred CCccCCCceEEcce------------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCe
Q psy4131 85 TGLKRIPDVVVWPV------------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLV 146 (241)
Q Consensus 85 ~~~~~~P~aVv~P~------------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~ 146 (241)
+.+...|.+|++|+ |+++|+| |++.+.++. ++++|||++||+|+++|+++.+
T Consensus 9 ~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~G-----hS~s~~~~~-----~gvvIdl~~l~~i~~id~~~~~ 78 (438)
T TIGR01678 9 KTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGG-----HSPSDIACT-----DGFLIHLDKMNKVLQFDKEKKQ 78 (438)
T ss_pred CcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCC-----CCCCCCccC-----CeEEEEhhhcCCceEEcCCCCE
Confidence 44677899999999 9999999 887654443 2699999999999999999999
Q ss_pred EEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcCCCCCCC
Q psy4131 147 ACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVS 226 (241)
Q Consensus 147 v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~ 226 (241)
|+||||+++.+|.+.|.++|+.++.. ++.+.+||||+++++++|. +.+||..+|+|+++|+|++||+++++++ .
T Consensus 79 vtV~aG~~l~~L~~~L~~~Gl~l~~~-g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~----~ 152 (438)
T TIGR01678 79 ITVEAGIRLYQLHEQLDEHGYSMSNL-GSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSE----E 152 (438)
T ss_pred EEEcCCCCHHHHHHHHHHcCCEecCC-CCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCC----C
Confidence 99999999999999999999998864 4556789999999999997 5899999999999999999999999874 3
Q ss_pred cCCCcccccccCCCC
Q psy4131 227 SGPDFNHVILGSEAD 241 (241)
Q Consensus 227 ~G~dl~~l~~GseGt 241 (241)
..+||.+..+|++|+
T Consensus 153 ~~~dlf~a~~~~~G~ 167 (438)
T TIGR01678 153 RNADVFQAARVSLGC 167 (438)
T ss_pred CChhHHHHHhcCCCc
Confidence 568999999999884
No 15
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.86 E-value=4.2e-21 Score=185.97 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=126.3
Q ss_pred hhcccCCccCCCceEEcce------------------EEEEc-CCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEE
Q psy4131 80 FSLRQTGLKRIPDVVVWPV------------------YITFG-KYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWL 140 (241)
Q Consensus 80 ~~l~~~~~~~~P~aVv~P~------------------v~~rG-~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~i 140 (241)
+.-|.+.+...|.+|++|+ |.++| +| |++.+.+.+... .++++|||++||+|+++
T Consensus 21 w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~g-----Hs~~~~a~t~~~-~ggvvIdL~~Ln~il~i 94 (557)
T TIGR01677 21 YGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYS-----HSIPKLACPDGS-DGALLISTKRLNHVVAV 94 (557)
T ss_pred hhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCC-----CCcCcccccCCC-CCEEEEEcccCCCCEEE
Confidence 3445567888999999999 88886 57 666554443221 12599999999999999
Q ss_pred eCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCCCC-CccccccccEeEEEEEecCC-----
Q psy4131 141 DEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKK-NLYGNIEDLLVQVTMVTARG----- 214 (241)
Q Consensus 141 d~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s-~~yG~~~d~V~~levVl~dG----- 214 (241)
|+++.+|+||||+++.+|.++|.++|+.++..|.. ...||||+++++++|+.. .+||.++|+|+++|||++||
T Consensus 95 D~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~-~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~ 173 (557)
T TIGR01677 95 DATAMTVTVESGMSLRELIVEAEKAGLALPYAPYW-WGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGF 173 (557)
T ss_pred eCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCC-CCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCc
Confidence 99999999999999999999999999999988764 357999999999999876 47899999999999999999
Q ss_pred -cEEEcCCCCCCCcCCCcccccccCCCC
Q psy4131 215 -TLERPCRGPRVSSGPDFNHVILGSEAD 241 (241)
Q Consensus 215 -~i~~~~~~~k~~~G~dl~~l~~GseGt 241 (241)
+++++++ ...+||.+.++|++|+
T Consensus 174 ~~v~~~s~----~~~~dLf~a~rgslG~ 197 (557)
T TIGR01677 174 AKVRILSE----GDTPNEFNAAKVSLGV 197 (557)
T ss_pred ceEEEeCC----CCCHHHHHhhccCCCc
Confidence 7777753 4568999999999985
No 16
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.80 E-value=4.6e-19 Score=171.64 Aligned_cols=142 Identities=14% Similarity=0.129 Sum_probs=121.4
Q ss_pred cCCccCCCceEEcce------------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCC
Q psy4131 84 QTGLKRIPDVVVWPV------------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNL 145 (241)
Q Consensus 84 ~~~~~~~P~aVv~P~------------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~ 145 (241)
.+.....|.+|+.|+ |.++|+| |+..+.+... +.+|||++||+|+++|++++
T Consensus 90 sg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsG-----hS~~~l~~td-----~glIdL~~l~~Il~vD~e~~ 159 (573)
T PLN02465 90 SGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSG-----LSPNGLAFSR-----EGMVNLALMDKVLEVDKEKK 159 (573)
T ss_pred ccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCC-----cCCCCeeeCC-----CEEEECcCCCCcEEEeCCCC
Confidence 455678899999999 9999999 7776655542 35789999999999999999
Q ss_pred eEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcCCCCCC
Q psy4131 146 VACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRV 225 (241)
Q Consensus 146 ~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~ 225 (241)
+|+|+||+++.+|.+.|+++|+.++..++ ....||||+++++++|.+ .+||.++|+|+++++|+++|+++++++
T Consensus 160 ~VtV~AG~~l~~L~~~L~~~GLal~n~g~-I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~---- 233 (573)
T PLN02465 160 RVTVQAGARVQQVVEALRPHGLTLQNYAS-IREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSK---- 233 (573)
T ss_pred EEEEccCCCHHHHHHHHHHcCCEeccCCC-CCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECC----
Confidence 99999999999999999999999887554 446899999999999986 579999999999999999999999864
Q ss_pred CcCCCcccccccCCCC
Q psy4131 226 SSGPDFNHVILGSEAD 241 (241)
Q Consensus 226 ~~G~dl~~l~~GseGt 241 (241)
...+||.++..++.|+
T Consensus 234 ~~~pdLF~aar~glG~ 249 (573)
T PLN02465 234 EDDPELFRLARCGLGG 249 (573)
T ss_pred CCCHHHHhHhhccCCC
Confidence 3447888888887764
No 17
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=2.2e-15 Score=136.45 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=119.2
Q ss_pred CCHHHHHHHHh-cCCceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEEcCC
Q psy4131 45 LGSEVLSLLEA-TNVSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITFGKY 105 (241)
Q Consensus 45 ~~~~~~~~L~~-vg~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~rG~G 105 (241)
+.++++++|++ +...+..++ .+..|++ + .....|+++++|+ ++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~l~~~tt---~---------~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgG 68 (302)
T PRK14652 2 VEATWRDEIARRVRGEVLRDA-PLAPRTA---V---------RVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGG 68 (302)
T ss_pred chHHHHHHHHHhhccccccCC-CcccccE---e---------ecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCC
Confidence 35689999999 875565554 3444432 1 2467889999998 9999999
Q ss_pred CCCCCCCCCCccccCCCCCceEEEEcCC-CCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhh
Q psy4131 106 SEHSDTQISEKFDPAGNQTQISNVPIRR-VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGW 184 (241)
Q Consensus 106 ~~~~~t~~~G~~~~~~~g~~gvvIdl~r-mn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ 184 (241)
||+. ++..+ -++++|++++ ++.+ ++ ++.+++|+||+.|.+|.+++.++||. +..+.+....||||+
T Consensus 69 -----SNll---v~d~g-~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~~~~L~~~~~~~GL~-GlE~l~gIPGTvGGa 135 (302)
T PRK14652 69 -----ANTL---VADAG-VRGVVLRLPQDFPGE-ST--DGGRLVLGAGAPISRLPARAHAHGLV-GMEFLAGIPGTLGGA 135 (302)
T ss_pred -----ccee---ecCCC-EeeEEEEecCCcceE-Ee--cCCEEEEECCCcHHHHHHHHHHcCCc-ccccccCCCcchhHH
Confidence 9873 33322 2369999987 4444 43 35699999999999999999999996 434444344699999
Q ss_pred hccCCCCCCCCccccccccEeEEEEEecCCcEEEcCCCCCCCcCCCcccccccC
Q psy4131 185 VATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGS 238 (241)
Q Consensus 185 ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~~~k~~~G~dl~~l~~Gs 238 (241)
+.+|++ .+||.++|+|.++++|+++| +.+. .+...++++++.+++.
T Consensus 136 v~mNaG----a~ggei~d~v~~v~vv~~~G-~~~~---~~~e~~f~YR~s~~~~ 181 (302)
T PRK14652 136 VAMNAG----TKLGEMKDVVTAVELATADG-AGFV---PAAALGYAYRTCRLPP 181 (302)
T ss_pred HHHcCC----CCceEhhheEEEEEEECCCC-cEEe---ehhhcCcccceeccCC
Confidence 999986 46799999999999999999 4333 3456788888887764
No 18
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=1.9e-15 Score=137.09 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=110.7
Q ss_pred CHHHHHHHHh-cCC-ceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEEcCC
Q psy4131 46 GSEVLSLLEA-TNV-SVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITFGKY 105 (241)
Q Consensus 46 ~~~~~~~L~~-vg~-~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~rG~G 105 (241)
.++++++|++ +++ .+..+ +++..|++.. ....++++++|+ ++++|+|
T Consensus 3 ~~~~~~~l~~~~~~~~v~~~-~~L~~~tt~~------------iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgG 69 (307)
T PRK13906 3 NKDIYQALQQLIPNEKIKVD-EPLKRYTYTK------------TGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNG 69 (307)
T ss_pred hHHHHHHHHHhcCCCeeecC-CccccceEcC------------cCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 3468899999 863 67776 4565666543 235678888887 9999999
Q ss_pred CCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhh
Q psy4131 106 SEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWV 185 (241)
Q Consensus 106 ~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~i 185 (241)
||+. +... +-++++|++++|++| +++. .+++|+||+.|.+|.+++.++||. +....+....||||++
T Consensus 70 -----SNll---~~d~-g~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~-GlE~~~gIPGtVGGav 136 (307)
T PRK13906 70 -----SNII---IREG-GIRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALT-GLEFACGIPGSIGGAV 136 (307)
T ss_pred -----eeEe---ecCC-CcceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCc-cchhhcCCCccHhHHH
Confidence 8874 2222 223799999999998 6763 589999999999999999999995 1111112234899999
Q ss_pred ccCCCCCCCCccccccccEeEEEEEecCCcEEEcCC
Q psy4131 186 ATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCR 221 (241)
Q Consensus 186 a~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~ 221 (241)
.+|+++++ |.++|+|+++++|+++|++++..+
T Consensus 137 ~mNaGayG----g~i~D~l~~v~vv~~~G~~~~~~~ 168 (307)
T PRK13906 137 YMNAGAYG----GEVKDCIDYALCVNEQGSLIKLTT 168 (307)
T ss_pred HhhCCcch----hhhhhheeEEEEEeCCCCEEEEEH
Confidence 99997633 689999999999999999998753
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.60 E-value=6.4e-15 Score=133.59 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=108.3
Q ss_pred HHHHHHHh-cC-CceecChhhhhhhhcCCCccchhhcccCCccCCCceEEcce------------------EEEEcCCCC
Q psy4131 48 EVLSLLEA-TN-VSVSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPV------------------YITFGKYSE 107 (241)
Q Consensus 48 ~~~~~L~~-vg-~~V~~d~~~~~~ys~d~~~~~~~~l~~~~~~~~P~aVv~P~------------------v~~rG~G~~ 107 (241)
+++++|++ ++ ..+..++ .+..|+++. ....|++|++|+ ++++|+|
T Consensus 5 ~~~~~l~~~l~~~~~~~~~-~l~~~tt~~------------igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgG-- 69 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQDE-MLKNHTHIK------------VGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNG-- 69 (305)
T ss_pred HHHHHHHHhcCcCceecCC-cchhccCcc------------cCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCC--
Confidence 56788888 76 3666664 666666542 356788899998 9999999
Q ss_pred CCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhcc
Q psy4131 108 HSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVAT 187 (241)
Q Consensus 108 ~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~ 187 (241)
||+. ++..+ -++++|+|++|++| +++ +.+++|+||+.|.+|.+++.++||. +....+....||||++.+
T Consensus 70 ---SNll---~~d~g-~~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~-Gle~~~giPGtVGGav~~ 138 (305)
T PRK12436 70 ---SNVI---IKDGG-IRGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLT-GLEFACGIPGSVGGALYM 138 (305)
T ss_pred ---eEEE---EeCCC-eeEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCc-cchhhcCCccchhHHHHh
Confidence 8885 32221 23699999999997 676 4689999999999999999999885 211111223589999999
Q ss_pred CCCCCCCCccc-cccccEeEEEEEecCCcEEEcCC
Q psy4131 188 RASGMKKNLYG-NIEDLLVQVTMVTARGTLERPCR 221 (241)
Q Consensus 188 ~g~G~~s~~yG-~~~d~V~~levVl~dG~i~~~~~ 221 (241)
|+++ || .+.|.+.+++++++||++++.++
T Consensus 139 NAGa-----yG~~~~dvl~~v~vv~~~G~v~~~~~ 168 (305)
T PRK12436 139 NAGA-----YGGEISFVLTEAVVMTGDGELRTLTK 168 (305)
T ss_pred cCcc-----chhehheeeeEEEEEeCCCCEEEEEH
Confidence 9987 55 67788889999999999998754
No 20
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.53 E-value=3.5e-14 Score=128.33 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=91.2
Q ss_pred ccCCCceEEcce------------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCC-CCCeeEEeCCCCeE
Q psy4131 87 LKRIPDVVVWPV------------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRR-VNSILWLDEDNLVA 147 (241)
Q Consensus 87 ~~~~P~aVv~P~------------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~r-mn~Il~id~~~~~v 147 (241)
....|+++++|+ ++++|+| ||+. .+..+ -++++|||++ |++| ++ ++.++
T Consensus 27 igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgG-----snll---~~d~g-~~gvvI~l~~~l~~i-~~--~~~~v 94 (298)
T PRK13905 27 VGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNG-----SNLL---VRDGG-IRGVVIRLGKGLNEI-EV--EGNRI 94 (298)
T ss_pred cCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCC-----ceEE---ecCCC-cceEEEEecCCcceE-Ee--cCCEE
Confidence 346788888887 9999999 8874 22221 1369999999 9987 44 45789
Q ss_pred EeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCCCCCccc-cccccEeEEEEEecCCcEEEcCC
Q psy4131 148 CIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYG-NIEDLLVQVTMVTARGTLERPCR 221 (241)
Q Consensus 148 ~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG-~~~d~V~~levVl~dG~i~~~~~ 221 (241)
+|+||++|.+|.++|.++|+. +....+....||||++++|+++ || .++|+|.++++|++||++++.++
T Consensus 95 ~v~aG~~~~~L~~~l~~~Gl~-gle~~~gipGTVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~~~~~~~ 163 (298)
T PRK13905 95 TAGAGAPLIKLARFAAEAGLS-GLEFAAGIPGTVGGAVFMNAGA-----YGGETADVLESVEVLDRDGEIKTLSN 163 (298)
T ss_pred EEECCCcHHHHHHHHHHcCCC-cchhccCCCcchhHHHHHcCCc-----CceEhheeEEEEEEEeCCCCEEEEEH
Confidence 999999999999999999983 1111112225899999999865 55 79999999999999999998753
No 21
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.51 E-value=6.5e-14 Score=125.85 Aligned_cols=113 Identities=21% Similarity=0.191 Sum_probs=92.5
Q ss_pred cCCCceEEcce------------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEe
Q psy4131 88 KRIPDVVVWPV------------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACI 149 (241)
Q Consensus 88 ~~~P~aVv~P~------------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~V 149 (241)
...|.++++|+ ++++|+| ||+...... .++++|++.+|+++ .+|+ +.+++|
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgG-----SNll~~d~~----~~gvvi~l~~~~~~-~~~~-~~~v~v 78 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEG-----SNLLILDDG----RGGVIINLGKGIDI-EDDE-GEYVHV 78 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecc-----eEEEEccCC----cCeEEEECCCCceE-EEec-CCEEEE
Confidence 55678888887 9999999 998633321 24799999999997 5666 579999
Q ss_pred CccchHHHHHHHHHHcCC----ceeccCCCCCCceehhhhccCCCCCCCCcccc-ccccEeEEEEEecCCcEEEcCC
Q psy4131 150 EAGIIGQDLERELNSRGY----TSGHEPDSYEFSSLGGWVATRASGMKKNLYGN-IEDLLVQVTMVTARGTLERPCR 221 (241)
Q Consensus 150 eaGv~~~~L~~~L~~~Gl----~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~-~~d~V~~levVl~dG~i~~~~~ 221 (241)
+||+.|.+|.+++.++|| ++...|+ ||||++.+|+++ ||. +.|.|+++|+|++||++++..+
T Consensus 79 ~aG~~~~~l~~~~~~~Gl~GlE~l~giPG-----tvGGai~mNAGa-----yG~~i~d~l~~v~vv~~~G~~~~~~~ 145 (284)
T TIGR00179 79 GGGENWHKLVKYALKNGLSGLEFLAGIPG-----TVGGAVIMNAGA-----YGVEISEVLVYATILLATGKTEWLTN 145 (284)
T ss_pred EcCCcHHHHHHHHHHCCCcccccCCCCCc-----hHHHHHHHhccc-----chhehhheEEEEEEEeCCCCEEEEEH
Confidence 999999999999999999 6666665 799999999976 555 4567899999999999988653
No 22
>KOG4730|consensus
Probab=99.49 E-value=6.7e-14 Score=130.27 Aligned_cols=112 Identities=18% Similarity=0.195 Sum_probs=95.2
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF 178 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~ 178 (241)
+++.|.| |+..+-.++. +.+|++.+||+++++|++..++|||+|+++.||++++++.||.+|..|... .
T Consensus 76 irvVg~g-----HSp~~l~ctd-----g~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLie~~~~~GlsL~~~~si~-e 144 (518)
T KOG4730|consen 76 IRVVGSG-----HSPSKLVCTD-----GLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLIEELAKLGLSLPNAPSIS-E 144 (518)
T ss_pred EEEeccc-----CCCCcceecc-----ccEEEhhhhccceeeCchhceEEeccCcCHHHHHHHHHhcCccccCCCcee-c
Confidence 8888988 6665555543 589999999999999999999999999999999999999999999988654 4
Q ss_pred ceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcCC
Q psy4131 179 SSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCR 221 (241)
Q Consensus 179 ~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~~ 221 (241)
.+|||++++++||++..-++.....+....++.++|.++..++
T Consensus 145 ~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~ 187 (518)
T KOG4730|consen 145 QSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSE 187 (518)
T ss_pred ceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecc
Confidence 7999999999999976656666666777777788999887765
No 23
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.31 E-value=1.7e-11 Score=110.93 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=91.2
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCc----eeccCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT----SGHEPD 174 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~----~~~~p~ 174 (241)
+.+.|+| ||+...-.+ -++++|.+.+|++| +++. ..++|+||+.|.+|..++.++||. +...|+
T Consensus 59 ~~vlG~G-----SNlLv~d~g----~~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPG 126 (297)
T PRK14653 59 VKILGNG-----TNVLPKDEP----MDFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPG 126 (297)
T ss_pred EEEEcCC-----eeEEEecCC----ccEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCch
Confidence 8899999 998543322 23799999889998 7873 589999999999999999999992 333465
Q ss_pred CCCCceehhhhccCCCCCCCCcccc-ccccEeEEEEEecCCcEEEcCCCCCCCcCCCcccccccCC
Q psy4131 175 SYEFSSLGGWVATRASGMKKNLYGN-IEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSE 239 (241)
Q Consensus 175 s~~~~tIGG~ia~~g~G~~s~~yG~-~~d~V~~levVl~dG~i~~~~~~~k~~~G~dl~~l~~Gse 239 (241)
||||++.+|+++ ||. ++|.|.++++++ +|++++.++ ...+++.++.+++++
T Consensus 127 -----TVGGAv~mNAGa-----yG~ei~d~l~~V~~~d-~g~v~~~~~---~e~~f~YR~S~~~~~ 178 (297)
T PRK14653 127 -----SVGGAVYMNAGA-----YGWETAENIVEVVAYD-GKKIIRLGK---NEIKFSYRNSIFKEE 178 (297)
T ss_pred -----hHHHHHHHhCcc-----CchhhheeEEEEEEEC-CCEEEEEch---hhccccCccccCCCC
Confidence 699999999987 565 999999999999 788887643 356677777776665
No 24
>KOG1262|consensus
Probab=99.24 E-value=4.1e-12 Score=116.71 Aligned_cols=119 Identities=22% Similarity=0.305 Sum_probs=95.8
Q ss_pred cCCCceEEcceEEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCC
Q psy4131 88 KRIPDVVVWPVYITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGY 167 (241)
Q Consensus 88 ~~~P~aVv~P~v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl 167 (241)
+..|.|-.+|.....|-.+...+-+ .--|++..+..||++|.++++|+|||+|+++|+.++|-+.|+
T Consensus 78 ~k~~lctaRp~Wltvs~r~~dykk~-------------h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~ 144 (543)
T KOG1262|consen 78 EKKPLCTARPGWLTVSTRFFDYKKC-------------HHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGY 144 (543)
T ss_pred ccCcccccCCCeEEEEEecchhhhh-------------cccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCc
Confidence 5567777788744444331111110 123566677789999999999999999999999999999999
Q ss_pred ceeccCCCCCCceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcC
Q psy4131 168 TSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC 220 (241)
Q Consensus 168 ~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~ 220 (241)
++|..|.- ...|+||.|.+-|.-..|.+||...+.+.+.|||++||+++++.
T Consensus 145 tLaV~~El-dDlTvGGLinG~Gies~ShkyGlfq~~~~aYEvVladGelv~~t 196 (543)
T KOG1262|consen 145 TLAVLPEL-DDLTVGGLINGVGIESSSHKYGLFQHICTAYEVVLADGELVRVT 196 (543)
T ss_pred eeeeeccc-ccceecceeeecccccccchhhhHHhhhheeEEEecCCeEEEec
Confidence 99998865 56899999987777788999999999999999999999999975
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.18 E-value=1e-10 Score=105.77 Aligned_cols=107 Identities=15% Similarity=0.108 Sum_probs=84.2
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCC-CeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVN-SILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYE 177 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn-~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~ 177 (241)
+.++|+| ||+. +++.+ -++++|++++|+ ++ ..+.++.+++|+||+.|.+|.+++.++||. +..+.+..
T Consensus 47 ~~vlG~G-----SNlL---~~d~g-~~GvVI~l~~~~~~i-~~~~~~~~v~v~AG~~~~~l~~~~~~~GL~-GlE~l~GI 115 (295)
T PRK14649 47 LFWLGGG-----SNLL---VRDEG-FDGLVARYRGQRWEL-HEHGDTAEVWVEAGAPMAGTARRLAAQGWA-GLEWAEGL 115 (295)
T ss_pred EEEEecc-----eeEE---EeCCC-cCeEEEEecCCCcEE-EEeCCcEEEEEEcCCcHHHHHHHHHHcCCc-cccccCCC
Confidence 8889999 8884 33322 247999998754 65 556555589999999999999999999986 22333334
Q ss_pred CceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcC
Q psy4131 178 FSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC 220 (241)
Q Consensus 178 ~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~ 220 (241)
..||||++.+|++.+ .+.+.|.|.++++++.+|++++..
T Consensus 116 PGTvGGa~~mNaGay----g~ei~d~l~~V~~~~~~g~~~~~~ 154 (295)
T PRK14649 116 PGTIGGAIYGNAGCY----GGDTATVLIRAWLLLNGSECVEWS 154 (295)
T ss_pred CcchhHHHHhhcccc----ceEhheeEEEEEEEeCCCCEEEEe
Confidence 458999999999765 378999999999999999998764
No 26
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.10 E-value=5.1e-10 Score=103.77 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=90.9
Q ss_pred ccCCCceEEcce------------------EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEE
Q psy4131 87 LKRIPDVVVWPV------------------YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVAC 148 (241)
Q Consensus 87 ~~~~P~aVv~P~------------------v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~ 148 (241)
....|++++.|+ +.++|+| ||+. +.+.+ -++++|+++ ++.| ++++++.+++
T Consensus 29 iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgG-----SNlL---v~D~g-~~GvVI~l~-~~~i-~i~~~~~~v~ 97 (363)
T PRK13903 29 VGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGG-----SNLV---IADDG-FDGTVVRVA-TRGV-TVDCGGGLVR 97 (363)
T ss_pred cCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCC-----eeEe---ECCCC-ccEEEEEeC-CCcE-EEeCCCCEEE
Confidence 345677777777 8899999 8873 33332 347999997 5887 7876678999
Q ss_pred eCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCCCCCCCccccccccEeEEEEEecC-CcEEEcC
Q psy4131 149 IEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTAR-GTLERPC 220 (241)
Q Consensus 149 VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~d-G~i~~~~ 220 (241)
|+||+.|.+|.+++.++||. +....+....||||.+.+|++.++ ..+.|.|.++++++.+ |++++..
T Consensus 98 vgAG~~~~~l~~~a~~~GL~-GlE~laGIPGTVGGAv~mNaGayG----~ei~D~l~sV~vvd~~~G~~~~~~ 165 (363)
T PRK13903 98 AEAGAVWDDVVARTVEAGLG-GLECLSGIPGSAGATPVQNVGAYG----QEVSDTITRVRLLDRRTGEVRWVP 165 (363)
T ss_pred EEcCCCHHHHHHHHHHcCCc-cccccCCCCcchhhHhhcCCChhH----HHHhhhEeEEEEEECCCCEEEEEE
Confidence 99999999999999999985 222222233589999999998753 3789999999999965 9998864
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.77 E-value=3.9e-08 Score=89.18 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=81.0
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF 178 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~ 178 (241)
+.+.|+| +|+. +++.+--++++|.+.+|+.| +++. ..++|+||+.|.+|.+++.++||. +....+...
T Consensus 59 ~~vlG~G-----SNlL---v~D~g~~~g~vi~~~~~~~i-~~~~--~~v~a~AG~~~~~l~~~~~~~gl~-GlE~l~gIP 126 (302)
T PRK14650 59 IFILGGG-----SNIL---INDEEEIDFPIIYTGHLNKI-EIHD--NQIVAECGTNFEDLCKFALQNELS-GLEFIYGLP 126 (302)
T ss_pred EEEEece-----eEEE---EECCCccceEEEEECCcCcE-EEeC--CEEEEEeCCcHHHHHHHHHHcCCc-hhhhhcCCC
Confidence 7888999 8873 44332024688888679987 7764 479999999999999999999984 222222233
Q ss_pred ceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcC
Q psy4131 179 SSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC 220 (241)
Q Consensus 179 ~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~ 220 (241)
.||||++.+|++.++ +.+.|.|.++++++.+|++.+..
T Consensus 127 GTVGGAv~mNAGayG----~ei~d~l~sV~~~d~~g~~~~~~ 164 (302)
T PRK14650 127 GTLGGAIWMNARCFG----NEISEILDKITFIDEKGKTICKK 164 (302)
T ss_pred cchhHHHHhhCCccc----cchheeEEEEEEEECCCCEEEEE
Confidence 489999999997643 58999999999999999987653
No 28
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=7.9e-08 Score=86.47 Aligned_cols=103 Identities=22% Similarity=0.230 Sum_probs=84.8
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCC----ceeccCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGY----TSGHEPD 174 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl----~~~~~p~ 174 (241)
+...|+| +|+. +.++ +-++++|.+.+.+.+ +++.++..+++++|+.|.+|.+++.++|+ ++...|+
T Consensus 47 ~~ilG~G-----SNlL---v~d~-g~~gvvi~~~~~~~~-~~~~~~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPG 116 (291)
T COG0812 47 VLILGGG-----SNLL---VRDG-GIGGVVIKLGKLNFI-EIEGDDGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPG 116 (291)
T ss_pred EEEEecC-----ceEE---EecC-CCceEEEEcccccce-eeeccCCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCc
Confidence 8889999 8863 3333 345799999988886 77777779999999999999999999988 3334454
Q ss_pred CCCCceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcC
Q psy4131 175 SYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC 220 (241)
Q Consensus 175 s~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~ 220 (241)
||||++-||++-++ +.++|.+.++++++.+|++.+..
T Consensus 117 -----svGgav~mNaGAyG----~Ei~d~~~~v~~ld~~G~~~~l~ 153 (291)
T COG0812 117 -----SVGGAVIMNAGAYG----VEISDVLVSVEVLDRDGEVRWLS 153 (291)
T ss_pred -----ccchhhhccCcccc----cchheeEEEEEEEcCCCCEEEEE
Confidence 79999999997654 67999999999999999998865
No 29
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.66 E-value=9.8e-08 Score=87.71 Aligned_cols=105 Identities=16% Similarity=0.103 Sum_probs=79.6
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEe-CCC--CeEEeCccchHHHHHHHHHHcCCceeccCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLD-EDN--LVACIEAGIIGQDLERELNSRGYTSGHEPDS 175 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id-~~~--~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s 175 (241)
+.+.|+| +|+. +.+ + -++++|.+ +|+.+ +++ .++ ..++++||+.|.+|.+++.++||. +....+
T Consensus 47 ~~vlG~G-----SNlL---v~D-~-~~g~vI~~-~~~~~-~~~~~~~~~~~v~a~AG~~~~~l~~~~~~~gl~-GlE~l~ 113 (334)
T PRK00046 47 VLVLGGG-----SNVL---FTE-D-FDGTVLLN-RIKGI-EVLSEDDDAWYLHVGAGENWHDLVLWTLQQGMP-GLENLA 113 (334)
T ss_pred EEEEece-----EEEE---ECC-C-CCEEEEEe-cCCce-EEEecCCCeEEEEEEcCCcHHHHHHHHHHcCch-hhHHhc
Confidence 7788999 8874 333 2 34788887 48887 663 222 279999999999999999999984 222222
Q ss_pred CCCceehhhhccCCCCCCCCccccccccEeEEEEEecC-CcEEEcC
Q psy4131 176 YEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTAR-GTLERPC 220 (241)
Q Consensus 176 ~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~d-G~i~~~~ 220 (241)
....||||++.+|++.++ +.+.|.|.++++++.+ |++++..
T Consensus 114 gIPGTVGGAv~mNaGayG----~ei~d~l~~V~v~d~~~g~~~~~~ 155 (334)
T PRK00046 114 LIPGTVGAAPIQNIGAYG----VELKDVCDYVEALDLATGEFVRLS 155 (334)
T ss_pred CCCcchhHHHHhcCCcCc----ccHheeEEEEEEEECCCCcEEEEE
Confidence 233589999999997654 5899999999999987 9987754
No 30
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.56 E-value=2.8e-07 Score=85.09 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=73.2
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEE---eCCCCeEEeCccchHHHHHHHHHHcCCceeccCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWL---DEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDS 175 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~i---d~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s 175 (241)
+.+.|+| +|+. +++.+ -++++|.+.+|+.+ ++ +.+...++|++|+.|.+|.+++.++||. +...-+
T Consensus 56 ~~iLG~G-----SNlL---~~D~g-~~G~VI~l~~~~~i-~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~-GlE~la 124 (354)
T PRK14648 56 LSLIGGG-----SNVL---IADEG-VPGLMLSLRRFRSL-HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALR-GLETFA 124 (354)
T ss_pred EEEEece-----eEEE---EeCCC-ccEEEEEeCCcCce-EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCc-chhhhc
Confidence 7789999 8873 33332 34799999779887 54 2222479999999999999999999984 222222
Q ss_pred CCCceehhhhccCCCCCCCCccccccccEeEEEEE
Q psy4131 176 YEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMV 210 (241)
Q Consensus 176 ~~~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levV 210 (241)
....||||++.+|++.++ +.+.|.|.+++++
T Consensus 125 GIPGTVGGAv~mNAGAyG----~ei~d~l~~V~v~ 155 (354)
T PRK14648 125 GLPGSVGGAAYMNARCYG----RAIADCFHSARTL 155 (354)
T ss_pred CCCcchhhHhhhcCCccc----eEhhheEEEEEEE
Confidence 233589999999997643 5789999999999
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.41 E-value=1.1e-06 Score=78.78 Aligned_cols=101 Identities=20% Similarity=0.194 Sum_probs=75.5
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCC-CCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRR-VNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYE 177 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~r-mn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~ 177 (241)
+.+.|+| +|+. +++.+ -++++|.+.+ ++.+ +++. +|+||+.|.+|.+++.++||. ....-+..
T Consensus 40 ~~vlG~G-----SNlL---~~D~g-~~g~vI~l~~~~~~~-~~~~-----~a~AG~~~~~l~~~~~~~gl~-GlE~l~gI 103 (273)
T PRK14651 40 YRVLGGG-----SNLL---VSDAG-VPERVIRLGGEFAEW-DLDG-----WVGGGVPLPGLVRRAARLGLS-GLEGLVGI 103 (273)
T ss_pred eEEEece-----eEEE---EcCCC-cceEEEEECCcceeE-eECC-----EEECCCcHHHHHHHHHHCCCc-chhhhcCC
Confidence 7789999 8873 33332 2468888866 6665 5432 699999999999999999983 22222223
Q ss_pred CceehhhhccCCCCCCCCccccccccEeEEEEEecCCcEEEcC
Q psy4131 178 FSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPC 220 (241)
Q Consensus 178 ~~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl~dG~i~~~~ 220 (241)
..||||++.+|++.++ +.+.|.|.++++++ +|++.+..
T Consensus 104 PGTVGGAv~mNaGayG----~ei~d~l~~V~~~~-~g~~~~~~ 141 (273)
T PRK14651 104 PAQVGGAVKMNAGTRF----GEMADALHTVEIVH-DGGFHQYS 141 (273)
T ss_pred CcchhhHHHhhCCccc----cChheeEEEEEEEE-CCCEEEEE
Confidence 3489999999997643 58999999999997 89988754
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.17 E-value=8.6e-06 Score=72.39 Aligned_cols=95 Identities=14% Similarity=0.024 Sum_probs=70.4
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCceeccCCCCCC
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF 178 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~ 178 (241)
+.+.|+| +|+. +++.+ .+ +++-+++|+.+ +++. ..++|+||+.|.+|.+++.++||. .....+...
T Consensus 34 ~~vlG~G-----SNlL---v~D~g-~~-~vv~~~~~~~~-~~~~--~~v~~~AG~~l~~l~~~~~~~gl~-GlE~l~gIP 99 (257)
T PRK13904 34 GQIIGGA-----NNLL---ISPNP-KN-LAILGKNFDYI-KIDG--ECLEIGGATKSGKIFNYAKKNNLG-GFEFLGKLP 99 (257)
T ss_pred eEEEece-----eEEE---EecCC-cc-EEEEccCcCeE-EEeC--CEEEEEcCCcHHHHHHHHHHCCCc-hhhhhcCCC
Confidence 7888999 8873 44443 23 44434568887 6754 479999999999999999999984 212222223
Q ss_pred ceehhhhccCCCCCCCCccccccccEeEEEEEe
Q psy4131 179 SSLGGWVATRASGMKKNLYGNIEDLLVQVTMVT 211 (241)
Q Consensus 179 ~tIGG~ia~~g~G~~s~~yG~~~d~V~~levVl 211 (241)
.||||++.+|++.++ +.+.|.|.++++++
T Consensus 100 GtVGGAv~mNaGa~g----~ei~d~l~~V~~~~ 128 (257)
T PRK13904 100 GTLGGLVKMNAGLKE----YEISNNLESICTNG 128 (257)
T ss_pred ccHHHHHHhcCCcCc----cchheeEEEEEEEe
Confidence 489999999997643 57889999999997
No 33
>PRK09799 putative oxidoreductase; Provisional
Probab=92.51 E-value=0.2 Score=44.54 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=50.6
Q ss_pred EEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHc-CC-----ceeccC
Q psy4131 100 ITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSR-GY-----TSGHEP 173 (241)
Q Consensus 100 ~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~-Gl-----~~~~~p 173 (241)
.+.+|| |.+.-.. ... ...++||++++ .+-.|..++..+++++++++.++.+...-. .| .+ ..|
T Consensus 26 ~ilAGG-----T~L~~~~-~~~--~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~~~~~~L~~a~~~v-as~ 95 (258)
T PRK09799 26 VWFAGG-----SKLNATP-TRT--DKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDARFIPAALREALGFV-YSR 95 (258)
T ss_pred EEEecC-----CChHhhh-CCC--CCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCcccHHHHHHHHHHh-CCH
Confidence 456888 8773211 111 12489999985 544455567899999999999998743111 11 11 124
Q ss_pred CCCCCceehhhhccCC
Q psy4131 174 DSYEFSSLGGWVATRA 189 (241)
Q Consensus 174 ~s~~~~tIGG~ia~~g 189 (241)
.--..+||||++++..
T Consensus 96 qIRN~aTiGGNl~~a~ 111 (258)
T PRK09799 96 HLRNQSTIGGEIAARQ 111 (258)
T ss_pred HHhccchhHHHhhcCC
Confidence 4445689999998654
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=92.28 E-value=0.047 Score=45.43 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=48.5
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHH---------HHHcCCce
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERE---------LNSRGYTS 169 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~---------L~~~Gl~~ 169 (241)
..+.+|| |.+.-.. ....-....+||++++..+-.|..++..++++|++++.++.+. |.++=..+
T Consensus 24 a~~vaGg-----T~l~~~~-~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~~~~~~~~p~L~~~~~~i 97 (171)
T PF00941_consen 24 ARIVAGG-----TDLGVQM-REGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELEESPLIQQYFPALAQAARRI 97 (171)
T ss_dssp EEEESS------TTHHHHH-HTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred CEEEeCC-----Cccchhc-ccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHhhcchhhhhHHHHHHHHHHh
Confidence 6677899 8753111 1110012489999986554444555789999999999999886 11111111
Q ss_pred eccCCCCCCceehhhhccCC
Q psy4131 170 GHEPDSYEFSSLGGWVATRA 189 (241)
Q Consensus 170 ~~~p~s~~~~tIGG~ia~~g 189 (241)
. .|.--..+|+||+++...
T Consensus 98 a-s~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 98 A-SPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp S--HHHHTT-BHHHHHHHTB
T ss_pred C-CHhHeeeeeeccccccCc
Confidence 1 122234589999997654
No 35
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=91.64 E-value=0.23 Score=47.89 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=54.0
Q ss_pred EEEEcCCCCCCCCCCCCcc-ccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHc--CC----ceec
Q psy4131 99 YITFGKYSEHSDTQISEKF-DPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSR--GY----TSGH 171 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~-~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~--Gl----~~~~ 171 (241)
..+.+|| |.+.-.. .... ....+||++++..+-.|..++..++++|++++.++.+.++++ .+ ..-.
T Consensus 214 a~lvAGG-----Tdl~~~~~~~~~--~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~~l~~~~p~L~~a~~~ia 286 (467)
T TIGR02963 214 ARIVAGS-----TDVGLWVTKQMR--DLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYAALAKRYPELGELLRRFA 286 (467)
T ss_pred CEEEecC-----cchHHHHhcCCC--CCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHHHHHHHhHHHHHHHHHhC
Confidence 5678899 8773221 1111 124899999865544455556789999999999998877654 11 0112
Q ss_pred cCCCCCCceehhhhccCC
Q psy4131 172 EPDSYEFSSLGGWVATRA 189 (241)
Q Consensus 172 ~p~s~~~~tIGG~ia~~g 189 (241)
.|.--..+||||++++..
T Consensus 287 s~qIRN~aTiGGNI~~as 304 (467)
T TIGR02963 287 SLQIRNAGTLGGNIANGS 304 (467)
T ss_pred CHHHcCceecccccccCC
Confidence 244445689999998654
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=90.95 E-value=0.35 Score=42.97 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=49.9
Q ss_pred EEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHH------HHHcCCceeccC
Q psy4131 100 ITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERE------LNSRGYTSGHEP 173 (241)
Q Consensus 100 ~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~------L~~~Gl~~~~~p 173 (241)
.+.+|| |.+.-... .. ...++||++++ .+-.|..++..++++|.+++.++.+. |.+.=..+ ..|
T Consensus 25 ~~lAGG-----TdL~~~~~-~~--~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~~~~~L~~aa~~v-a~~ 94 (257)
T TIGR03312 25 VWFAGG-----SKLNATPT-RT--DKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNELTPAALKEALGFV-YSR 94 (257)
T ss_pred EEEecC-----cchhhhhc-cc--CCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcchHHHHHHHHHHh-CCH
Confidence 346888 88732211 11 12478999886 44445556679999999999998763 22111112 234
Q ss_pred CCCCCceehhhhccCC
Q psy4131 174 DSYEFSSLGGWVATRA 189 (241)
Q Consensus 174 ~s~~~~tIGG~ia~~g 189 (241)
.--..+|+||++++..
T Consensus 95 qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 95 HIRNQATIGGEIAAFQ 110 (257)
T ss_pred HHhccccHHHHhhcCC
Confidence 4446689999998654
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=88.24 E-value=0.45 Score=42.97 Aligned_cols=84 Identities=12% Similarity=0.063 Sum_probs=50.0
Q ss_pred EEEEcCCCCCCCCCCCCcc-ccCCCCCceEEEEcCCCCCeeEEe-CCCCeEEeCccchHHHHHH--HHHHcC--C----c
Q psy4131 99 YITFGKYSEHSDTQISEKF-DPAGNQTQISNVPIRRVNSILWLD-EDNLVACIEAGIIGQDLER--ELNSRG--Y----T 168 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~-~~~~~g~~gvvIdl~rmn~Il~id-~~~~~v~VeaGv~~~~L~~--~L~~~G--l----~ 168 (241)
..+.+|| |.+.-.. .... +...+||++++..+-.|. .++..+++++++++.++.+ .++++- | .
T Consensus 26 a~ivaGG-----Tdl~~~~~~~~~--~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~~~~~i~~~~p~L~~a~~ 98 (291)
T PRK09971 26 AKLIAGG-----TDVLIQLHHHND--RYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQIIEDPIIQKHLPALAEAAV 98 (291)
T ss_pred CEEEecc-----chHHHHHhCCCC--CCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHhcChHHHHHhHHHHHHHH
Confidence 3557888 8763221 1111 124899999865443444 2446799999999999986 222210 0 0
Q ss_pred eeccCCCCCCceehhhhccCC
Q psy4131 169 SGHEPDSYEFSSLGGWVATRA 189 (241)
Q Consensus 169 ~~~~p~s~~~~tIGG~ia~~g 189 (241)
.-..|.--..+||||++++..
T Consensus 99 ~ia~~qIRN~aTiGGNi~~a~ 119 (291)
T PRK09971 99 SIGGPQIRNVATIGGNICNGA 119 (291)
T ss_pred HhCCHHHhcceecccccccCC
Confidence 012344445689999998654
No 38
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=86.32 E-value=0.48 Score=42.11 Aligned_cols=84 Identities=10% Similarity=0.138 Sum_probs=51.2
Q ss_pred EEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHH--HHHc--CC----ceec
Q psy4131 100 ITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERE--LNSR--GY----TSGH 171 (241)
Q Consensus 100 ~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~--L~~~--Gl----~~~~ 171 (241)
.+.+|| |.+.-......-.....+||++++..+-.|+.++..+++++++++.++.+. +.++ .+ ..-.
T Consensus 18 ~ivaGg-----T~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~i~~~~p~L~~a~~~ia 92 (264)
T TIGR03199 18 TFVSGS-----TLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPLIKRALPCFVDAASAIA 92 (264)
T ss_pred EEEEcc-----ChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChHhHhHhHHHHHHHHHhc
Confidence 456888 876322111000012489999987666566667789999999999999752 1111 00 0112
Q ss_pred cCCCCCCceehhhhccC
Q psy4131 172 EPDSYEFSSLGGWVATR 188 (241)
Q Consensus 172 ~p~s~~~~tIGG~ia~~ 188 (241)
.|.--..+|+||++++.
T Consensus 93 ~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 93 APGVRNRATIGGNIASG 109 (264)
T ss_pred CHHHhcceecHHhccCc
Confidence 34444568999999865
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=84.72 E-value=0.67 Score=42.65 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=48.9
Q ss_pred EEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHH--HHHc-C-C----ceec
Q psy4131 100 ITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERE--LNSR-G-Y----TSGH 171 (241)
Q Consensus 100 ~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~--L~~~-G-l----~~~~ 171 (241)
.+.+|| |.+.-.... .......+||+.++..+-.|..++..+++++.+++.++.+. +.++ . | ....
T Consensus 27 ~ivaGG-----Tdl~~~~~~-~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~~~~i~~~~p~L~~a~~~ia 100 (321)
T TIGR03195 27 RPLAGG-----TDLLPNLRR-GLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAEDALVRTRWPALAQAARAVA 100 (321)
T ss_pred EEEEcc-----chHHHHHhc-ccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhhChhhHhHhHHHHHHHHHhC
Confidence 457888 765222211 00112489999975444334455678999999999999652 2211 0 0 0012
Q ss_pred cCCCCCCceehhhhccC
Q psy4131 172 EPDSYEFSSLGGWVATR 188 (241)
Q Consensus 172 ~p~s~~~~tIGG~ia~~ 188 (241)
.|..-..+||||++++.
T Consensus 101 s~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 101 GPTHRAAATLGGNLCLD 117 (321)
T ss_pred CHHHhCceecHHhhhcc
Confidence 34444568999999964
No 40
>PLN02906 xanthine dehydrogenase
Probab=82.93 E-value=1.9 Score=46.89 Aligned_cols=85 Identities=12% Similarity=-0.004 Sum_probs=54.0
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcC-----C---ce-
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRG-----Y---TS- 169 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~G-----l---~~- 169 (241)
....+|| |.+.-.. ........++||++++..+-.|..++..++++|++++.+|.+.|.+.= + .+
T Consensus 250 a~ivAGG-----Tdl~~~~-~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~~~l~~~i~~~~~~~~~~~p 323 (1319)
T PLN02906 250 AKLVVGN-----TEVGIEM-RFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQNLFRKVVKERPAHETSACK 323 (1319)
T ss_pred CEEEEcC-----chhHHHh-hhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHHHHHHHHhhhcchhhhHHHH
Confidence 4567888 8873221 111111248999998655544555667899999999999998754431 0 01
Q ss_pred --------eccCCCCCCceehhhhccCC
Q psy4131 170 --------GHEPDSYEFSSLGGWVATRA 189 (241)
Q Consensus 170 --------~~~p~s~~~~tIGG~ia~~g 189 (241)
-..|.--..+||||+|++..
T Consensus 324 ~L~~~~~~ias~qIRN~aTiGGNI~~as 351 (1319)
T PLN02906 324 AFIEQLKWFAGTQIRNVASIGGNICTAS 351 (1319)
T ss_pred HHHHHHHHhCCHhhcCceechhhhccCC
Confidence 12344446689999998654
No 41
>PLN00192 aldehyde oxidase
Probab=76.91 E-value=2.2 Score=46.50 Aligned_cols=83 Identities=12% Similarity=0.001 Sum_probs=53.4
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCC---cee-----
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGY---TSG----- 170 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl---~~~----- 170 (241)
....+|| |.+.= ..... ...++||++++..+-.|..++..++++|++++.++.+.+...-. .+|
T Consensus 259 a~lvAGg-----Tdl~~-~k~~~--~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~~l~~~~~~~~~~p~L~~~ 330 (1344)
T PLN00192 259 VKLVVGN-----TGTGY-YKDEE--LYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIEALREESKSEYVFKKIADH 330 (1344)
T ss_pred eEEEEeC-----Cccee-eeccC--CCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHHHHHhhccccchHHHHHHH
Confidence 3456888 77621 11111 12489999986555455556679999999999999987765421 122
Q ss_pred ----ccCCCCCCceehhhhccCC
Q psy4131 171 ----HEPDSYEFSSLGGWVATRA 189 (241)
Q Consensus 171 ----~~p~s~~~~tIGG~ia~~g 189 (241)
..|.--..+||||+|++..
T Consensus 331 ~~~vAs~qIRN~aTlGGNI~~As 353 (1344)
T PLN00192 331 MEKIASRFVRNTGSIGGNLVMAQ 353 (1344)
T ss_pred HHHhcChhhccceechhhhcccC
Confidence 1233445689999998653
No 42
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=76.45 E-value=3.4 Score=44.99 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=53.8
Q ss_pred EEEEcCCCCCCCCCCCCccccCCCCCceEEEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHc----C----Ccee
Q psy4131 99 YITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSR----G----YTSG 170 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~~~~~~g~~gvvIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~----G----l~~~ 170 (241)
-...+|| |.+.=.. .........+||+++...+-.|..++..++++|++++.+|.+.|.+. . -.+|
T Consensus 258 a~lvAGG-----Tdl~~~~-k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~~~l~~~i~~~p~~~~~~~p 331 (1330)
T TIGR02969 258 APVVMGN-----TSVGPEV-KFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVKDILADVVQKLPEETTQTYR 331 (1330)
T ss_pred CEEEecC-----cchHHHh-hhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHHHHHHHhhhcCchhhhHHHH
Confidence 4567888 8873221 01100113799999866555556667899999999999999875533 0 0011
Q ss_pred ---------ccCCCCCCceehhhhccCC
Q psy4131 171 ---------HEPDSYEFSSLGGWVATRA 189 (241)
Q Consensus 171 ---------~~p~s~~~~tIGG~ia~~g 189 (241)
..|.--..+||||+|++..
T Consensus 332 ~L~~a~~~ias~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 332 ALLKHLGTLAGSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHHHHhCChhhcccccchhhcccCC
Confidence 1244445689999998654
No 43
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=64.62 E-value=4.6 Score=38.19 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=51.0
Q ss_pred EEEcCCCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCc-------eeccCCCCCCceehhhhccCCCCCCCCccccc
Q psy4131 128 NVPIRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT-------SGHEPDSYEFSSLGGWVATRASGMKKNLYGNI 200 (241)
Q Consensus 128 vIdl~rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~-------~~~~p~s~~~~tIGG~ia~~g~G~~s~~yG~~ 200 (241)
+|=..++..+-+|+...+.+++++|+++.|.+..|..+=-. |...+ .-...||||+|++++. -|..
T Consensus 248 vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~q-vRN~gTlGGNIangSP------IGDt 320 (493)
T COG4630 248 VIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAGRYPALGELWDRFGGEQ-VRNMGTLGGNIANGSP------IGDT 320 (493)
T ss_pred eEEecchhhhheeeecCCcEEEccCccHHHHHHHHHhhCchHHHHHHHhcchh-hhccccccccccCCCc------CCCC
Confidence 33334433333445566899999999999999999865221 11111 1134799999986542 2332
Q ss_pred c--ccEeEEEEEecCCcEEE
Q psy4131 201 E--DLLVQVTMVTARGTLER 218 (241)
Q Consensus 201 ~--d~V~~levVl~dG~i~~ 218 (241)
- =..++..+++-.|+-.+
T Consensus 321 PPaLIALgA~ltLr~g~~~R 340 (493)
T COG4630 321 PPALIALGATLTLRSGDGRR 340 (493)
T ss_pred CchhhhcCcEEEEEecCCcc
Confidence 2 23467788876665444
No 44
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=45.98 E-value=28 Score=31.54 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=50.8
Q ss_pred EEEEcCCCCCCCCCCCCcc-ccCCCCCceEEEEcCCCC-CeeEEeCCCCeEEeCccchHHHHHHHHHHcCC--------c
Q psy4131 99 YITFGKYSEHSDTQISEKF-DPAGNQTQISNVPIRRVN-SILWLDEDNLVACIEAGIIGQDLERELNSRGY--------T 168 (241)
Q Consensus 99 v~~rG~G~~~~~t~~~G~~-~~~~~g~~gvvIdl~rmn-~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl--------~ 168 (241)
..+.+|| |++.-.. .... +..-+||+.++. ....+..+++.++++|-+++.++.+--.-+.. .
T Consensus 25 a~~laGG-----t~L~~~~k~~~~--~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~~~~~~~~~~p~L~ea~~ 97 (284)
T COG1319 25 AKYLAGG-----TDLLPLMKLGIE--RPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIARHPAVRRIPPALSEAAS 97 (284)
T ss_pred cEEeeCc-----chHHHHhhcccC--CcceEEEecCChhhhceEeecCCEEEEeecccHHHHHhChhhhhhchHHHHHHH
Confidence 4667899 8875322 1111 123688998874 22233445677999999999998643211111 1
Q ss_pred eeccCCCCCCceehhhhccCCC
Q psy4131 169 SGHEPDSYEFSSLGGWVATRAS 190 (241)
Q Consensus 169 ~~~~p~s~~~~tIGG~ia~~g~ 190 (241)
...+|.--..+||||+++...+
T Consensus 98 ~ia~~qvRN~aTiGGn~c~a~p 119 (284)
T COG1319 98 AIASPQVRNRATIGGNLCNADP 119 (284)
T ss_pred HhcChhhcceeeecchhccCCC
Confidence 2234655566899999876543
No 45
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=27.45 E-value=82 Score=22.35 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=30.0
Q ss_pred CCeEEeCccchHHHHHHHHHHcCCceeccCCCCCCceehhhhccCCC
Q psy4131 144 NLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRAS 190 (241)
Q Consensus 144 ~~~v~VeaGv~~~~L~~~L~~~Gl~~~~~p~s~~~~tIGG~ia~~g~ 190 (241)
++...|.+-+.+.++++.+ |+.++.. ..-||||++...-+
T Consensus 5 ~~~~~v~G~~~l~~l~~~~---~~~l~~~----~~~Tl~G~i~~~l~ 44 (81)
T PF03471_consen 5 DGTYIVSGSTPLDDLNELL---GLDLPEE----DYDTLGGLILEQLG 44 (81)
T ss_dssp TSEEEEETTSBHHHHHHHH---TS-TTTT----TTSBHHHHHHHHHT
T ss_pred CCEEEEEecCCHHHHHHHH---CcCCCcc----chhhHHHHHHHHcC
Confidence 4678999999999999887 5665542 33599999986554
No 46
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=25.35 E-value=89 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=20.1
Q ss_pred CCCeEEeCccchHHHHH-HHHHHcCCc
Q psy4131 143 DNLVACIEAGIIGQDLE-RELNSRGYT 168 (241)
Q Consensus 143 ~~~~v~VeaGv~~~~L~-~~L~~~Gl~ 168 (241)
....|.|.||.+..|+. ..++++|+.
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~ 36 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLN 36 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 34578999999999954 556788885
No 47
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.27 E-value=1.2e+02 Score=19.86 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=20.7
Q ss_pred EEeCCCCeEEeCcc---chHHHHHHHHHHcCC
Q psy4131 139 WLDEDNLVACIEAG---IIGQDLERELNSRGY 167 (241)
Q Consensus 139 ~id~~~~~v~VeaG---v~~~~L~~~L~~~Gl 167 (241)
++|..+++++|..- +...++.+.+.+.|+
T Consensus 30 ~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy 61 (62)
T PF00403_consen 30 KVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY 61 (62)
T ss_dssp EEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred EEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence 56666666665443 456999999999886
No 48
>KOG4656|consensus
Probab=22.35 E-value=1e+02 Score=26.95 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=31.3
Q ss_pred CCCCeeEEeCCCCeEEeCccchHHHHHHHHHHcCCc
Q psy4131 133 RVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT 168 (241)
Q Consensus 133 rmn~Il~id~~~~~v~VeaGv~~~~L~~~L~~~Gl~ 168 (241)
..|++ ++|.+++.+.|+.-+.+.+++..|..-|..
T Consensus 33 Gi~~v-evdle~q~v~v~ts~p~s~i~~~le~tGr~ 67 (247)
T KOG4656|consen 33 GINSV-EVDLEQQIVSVETSVPPSEIQNTLENTGRD 67 (247)
T ss_pred CcceE-EEEhhhcEEEEEccCChHHHHHHHHhhChh
Confidence 45676 999999999999999999999999988874
No 49
>smart00455 RBD Raf-like Ras-binding domain.
Probab=21.47 E-value=1.1e+02 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=19.6
Q ss_pred CCeEEeCccchHHHH-HHHHHHcCCc
Q psy4131 144 NLVACIEAGIIGQDL-ERELNSRGYT 168 (241)
Q Consensus 144 ~~~v~VeaGv~~~~L-~~~L~~~Gl~ 168 (241)
.-.|.+.||.+..|+ ...++++|+.
T Consensus 11 ~~~V~vrpg~tl~e~L~~~~~kr~l~ 36 (70)
T smart00455 11 RTVVKVRPGKTVRDALAKALKKRGLN 36 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 346889999999994 5566889985
Done!