RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4131
(241 letters)
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 192 bits (490), Expect = 4e-58
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 24/198 (12%)
Query: 60 VSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWP------------------VYIT 101
+ R+ G++L ++ +R +K PD++V P V I
Sbjct: 107 LKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIP 166
Query: 102 FGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGIIGQDLERE 161
G + I +P N+ ++ +RR+N +LW+D + ACI+ GI+G +LE++
Sbjct: 167 MG-----GGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQ 221
Query: 162 LNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCR 221
L+ +G + GH+PDS+EFS+LGGW+AT +SG + + YG+IED+ V VT GTLE
Sbjct: 222 LHKQGVSLGHDPDSFEFSTLGGWLATCSSGHQSDKYGDIEDMAVSFRTVTPTGTLELR-N 280
Query: 222 GPRVSSGPDFNHVILGSE 239
G R +G ++ H+ILGSE
Sbjct: 281 GARSGAGINYKHIILGSE 298
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO;
HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB:
4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A*
Length = 481
Score = 58.6 bits (141), Expect = 3e-10
Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASG 191
+N+I +D D + I+AG+ L + G P + + + +GG +A G
Sbjct: 95 TPLNTIHSIDADTKLVDIDAGVNLDQLMKAALPFGLWVPVLPGTRQVT-VGGAIACDIHG 153
Query: 192 MKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSE 239
+ G+ + + + ++TA G + + +G
Sbjct: 154 KNHHSAGSFGNHVRSMDLLTADGEIRHLT---PTGEDAELFWATVGGN 198
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin,
flavoprotein, oxidoreductase; HET: FAD; 1.1A
{Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A*
2vfv_A*
Length = 422
Score = 55.8 bits (134), Expect = 2e-09
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASG 191
+ S++ +D + G+ +L R +++RG + S S+ G VAT G
Sbjct: 68 AGLPSVVDVDTAARTVRVGGGVRYAELARVVHARGLALPNMA-SLPHISVAGSVATGTHG 126
Query: 192 MKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILG 237
G++ ++ +V +VTA G+ RG F +
Sbjct: 127 SGVG-NGSLASVVREVELVTADGSTVVIARGD-----ERFGGAVTS 166
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit;
flavoprotein, electron-transfer, FAD, oxidoreductase;
HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1
d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Length = 520
Score = 55.4 bits (134), Expect = 4e-09
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 15/119 (12%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRG--YTSGHEPDSYEFSSLGGWVA-TR 188
+++N I+ +D + A +E G+ + + S++ G V T
Sbjct: 110 KKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVM----LSFSAPSAIAGPVGNTM 165
Query: 189 ASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSS--------GPDFNHVILGSE 239
G+ YG + + +V A G + R G S G + ++
Sbjct: 166 DRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQ 224
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen
channel, FAD, flavoprotein, oxidoreductase; HET: FAD
SUC; 1.54A {Chromobacterium SP}
Length = 540
Score = 51.8 bits (123), Expect = 6e-08
Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 13/99 (13%)
Query: 132 RRVNSILWLDEDNLVACI--EAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRA 189
R + + +D VA + +AGI + L L G P +LGG +A
Sbjct: 85 TRYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPA-PGDLTLGGVLAING 143
Query: 190 SG----------MKKNLYGNIEDLLVQVTMVTARGTLER 218
G + YG+I +L++ +T V
Sbjct: 144 HGTAIPAKGERRLAGASYGSISNLVLSLTAVVYDKASGA 182
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate
dehydrogenase, putative D-LACT dehydrogenase; HET: FAD;
2.57A {Rhodopseudomonas palustris}
Length = 476
Score = 51.4 bits (124), Expect = 8e-08
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASG 191
+R++ I +D + +EAG I Q ++ + + ++GG ++T A G
Sbjct: 103 KRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGG 162
Query: 192 MKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRV---SSGPDFNHVILGSE 239
YG D+ + V +V A G + ++ ++G D + +G+E
Sbjct: 163 TAALAYGLARDMALGVEVVLADGRVMN--LLSKLKKDNTGYDLRDLFIGAE 211
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity;
HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP:
d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A*
1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A*
1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Length = 560
Score = 49.5 bits (118), Expect = 3e-07
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVA---TR 188
+ +N +L ++ + +E G+ DL L + + + LGG
Sbjct: 125 KNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLR---DKLWLDVPDLGGGSVLGNAV 181
Query: 189 ASGMKKNLYGNIEDLLVQVTMVTARGTLER 218
G+ YG+ + + +V A G L R
Sbjct: 182 ERGVGYTPYGDHWMMHSGMEVVLANGELLR 211
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus
thermophilus}
Length = 219
Score = 46.7 bits (111), Expect = 1e-06
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 10/103 (9%)
Query: 140 LDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGN 199
+ + ++ L G P +GG VA +
Sbjct: 3 VHAADQYLVAPGEADLLEVHARLAGTGLFPPFPP-VELPGGVGGLVARGGFAQTF--FF- 58
Query: 200 IEDLLVQVTMVTARGTLERPCRGPRV---SSGPDFNHVILGSE 239
++ +T T +G R G V G D + +GS
Sbjct: 59 -PAEVLGLTFRTPKGRRVR--AGGVVVKNVQGYDLVRLFVGSF 98
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET:
FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3
d.145.1.1 PDB: 1i19_A*
Length = 561
Score = 46.3 bits (109), Expect = 3e-06
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
Query: 118 DPAGNQTQISNVPIRRVNSI-LWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSY 176
A + I + +N I + AG + + EL + P
Sbjct: 78 KGANVEKVILADTMTHLNGITVNTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPG 137
Query: 177 EFSSLGGWVATRASG----------MKKNLYGNIEDLLVQVTMVTARGTL 216
S+GG +A A G + + YG++ +L+ ++T V GT
Sbjct: 138 V-LSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELTAVVWNGTT 186
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Length = 571
Score = 42.3 bits (99), Expect = 7e-05
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 119 PAGNQTQISNVPI--RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTS-GHEPDS 175
P GN V I R++ + L + V G LE+ L G S
Sbjct: 87 PNGNDYDRDVVIISTLRLDKLHVLGKGEQVLA-YPGTTLYSLEKALKPLGREPHSVIGSS 145
Query: 176 YEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLER 218
+S+ G + + G ++ + + G L
Sbjct: 146 CIGASVIGGICNNSGGSLVQRGPAYTEMSL-FARINEDGKLTL 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 0.001
Identities = 46/320 (14%), Positives = 90/320 (28%), Gaps = 111/320 (34%)
Query: 4 SVT--LSLFHSKHEPKMKYNTGGLTGWE-QSYCSKIKLICLGIKLGSEVLSLLEATNVS- 59
VT LS + H + +++ LT E +S K L + L E +
Sbjct: 276 QVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLK----YLDCRPQD--LPR-EVLTTNP 327
Query: 60 --VSTQGEDRLIRAHGQTLYEVFSLRQTGLKRIPDVVVWPVYITFGKYSEHSDTQISEKF 117
+S +I S+R GL + W ++ K + ++ +
Sbjct: 328 RRLS------IIAE---------SIRD-GLATWDN---WK-HVNCDKLTTIIESSL-NVL 366
Query: 118 DPAGNQTQ-----I--SNVPI-RRVNSILWLD------EDNLVACIEAGIIGQD------ 157
+PA + + + I + S++W D + + ++ +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 158 ------------------LEREL-----NSRGYTSGHEP----DSYEFSSLG-------- 182
L R + + + S D Y +S +G
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 183 --------------GWVAT--RASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVS 226
++ R N G+I + L Q+ P V+
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 227 SGPDF-----NHVILGSEAD 241
+ DF ++I D
Sbjct: 547 AILDFLPKIEENLICSKYTD 566
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric
substrates, flavoenzymes, NI degradation; HET: FAD;
1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Length = 459
Score = 38.2 bits (89), Expect = 0.001
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT--SGHEPDSYEFSSLGGWVATRA 189
R +NSI +D A I G+I DL +E G +G P G
Sbjct: 89 RLMNSI-HIDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHPKV----GFCGLALNGG 143
Query: 190 SGMKKNLYGNIEDLLVQVTMVTARGTL 216
G YG D ++ T+VTA G +
Sbjct: 144 VGFLTPKYGLASDNILGATLVTATGDV 170
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein,
FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4
d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A*
3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Length = 534
Score = 34.6 bits (79), Expect = 0.025
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 133 RVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASGM 192
+ + D + D+ R +RG Y + ++GG ++
Sbjct: 128 AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRS-WTDYLYLTVGGTLSNAGISG 186
Query: 193 KKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILGSE 239
+ +G ++++ ++T G + C D +LG
Sbjct: 187 QAFRHGPQISNVLEMDVITGHGEMVT-CSK---QLNADLFDAVLGGL 229
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation,
oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Length = 518
Score = 33.4 bits (76), Expect = 0.066
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 131 IRRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT----SGHEPDSYEFSSLGGWVA 186
+R ++SI +D + A +EAG ++ +N + G+ P +GG +
Sbjct: 105 LRNMHSI-KIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTV----GVGGHFS 159
Query: 187 TRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPD 230
G YG D ++ +V G + R S G D
Sbjct: 160 GGGYGALMRNYGLAADNIIDAHLVNVDGKVLD-----RKSMGED 198
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 31.8 bits (71), Expect = 0.19
Identities = 7/56 (12%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 86 GLKRIPDVVVWPVYITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSILWLD 141
LK+ ++ +W +YI + + ++ E ++ + + L+ +
Sbjct: 40 CLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT-----LGQFENYWDSYGLYKE 90
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation,
alakloid biosynt oxidoreductase, alkaloid metabolism;
HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica}
PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A*
3fwa_A*
Length = 495
Score = 31.4 bits (71), Expect = 0.25
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYT----SGHEPDSYEFSSLGGWVAT 187
+N + +D ++ A +E+G +L + +G P GG ++
Sbjct: 98 MNLNRV-SIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTV----GTGGHISG 152
Query: 188 RASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPD 230
GM YG D +V ++ A G + R + G D
Sbjct: 153 GGFGMMSRKYGLAADNVVDAILIDANGAILD-----RQAMGED 190
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD
binding domain, BERB berberine-like domain,
glucooligosaccharide oxidase; HET: FAD NAG ABL TRS;
2.10A {Microdochium nivale} PDB: 3rj8_A*
Length = 473
Score = 30.5 bits (69), Expect = 0.45
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 33/101 (32%)
Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSR----------------GYTSGHEPDS 175
R+ ++ ++ +A +E G L LN + G+ +
Sbjct: 89 DRMIDVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISHGTCPGVGISGHFAH----- 143
Query: 176 YEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTL 216
GG+ G +++G D +V VT+V A G +
Sbjct: 144 ------GGF------GFSSHMHGLAVDSVVGVTVVLADGRI 172
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 28.7 bits (63), Expect = 2.2
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 78 EVFSLRQTGLKRIPDVVVWPVYITFGKYSEHSDTQISEKFDPAGNQTQISNVPIRRVNSI 137
+V L Q L ++ + +W Y+++ + ++ EK A + + + + ++
Sbjct: 64 KVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDF-ALDKIGMEIMSYQ 122
Query: 138 LWLD 141
+W+D
Sbjct: 123 IWVD 126
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin
biosynthesis, covalently bound FAD, oxidoreductase; HET:
FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Length = 501
Score = 28.3 bits (63), Expect = 2.8
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 34/116 (29%)
Query: 131 IRRVNSILWLDEDNLVACIEAGIIGQDLERELNSR----------------GYTSGHEPD 174
+ +++I D + +G +++ L R G +G
Sbjct: 85 LHNLHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALPLGACSAVGMGGLVAG---- 139
Query: 175 SYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPD 230
GG+ G G + D L V + + R D
Sbjct: 140 -------GGY------GPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDTGD 182
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics,
PSI, protein structure initiative; 2.80A
{Chromobacterium violaceum} SCOP: a.204.1.4
Length = 116
Score = 26.5 bits (59), Expect = 4.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 145 LVACIEAGIIGQDLERELNSRGYTSGHE 172
+V G+ +D+ EL+ R SG +
Sbjct: 72 MVLLTYHGLRPEDVVMELHRREGISGLD 99
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme,
twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces
galilaeus}
Length = 521
Score = 27.6 bits (61), Expect = 4.2
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 35/117 (29%)
Query: 131 IRRVNSILWLDEDNLVACIEAGIIGQDLERELNSR----------------GYTSGHEPD 174
+ ++ + + D +E G + R L G+ G
Sbjct: 106 MSQMRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIPAGVCPQVGVGGHVLG---- 160
Query: 175 SYEFSSLGGWVATRASGMKKNLYGNIEDLLVQVTMVTARGT-LERPCRGPRVSSGPD 230
GG+ G G + D L V +V + R + P+
Sbjct: 161 -------GGY------GPLSRRDGVVADHLYAVEVVVVDASGRARKVVATSAADDPN 204
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis,
glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia
coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Length = 299
Score = 27.2 bits (61), Expect = 4.3
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 149 IEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLG 182
++ GIIG+++ E G +P + L
Sbjct: 67 VDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLD 100
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural
genomics, glycosidase, PSI-2, protein initiative; 2.40A
{Bacteroides vulgatus}
Length = 801
Score = 27.0 bits (60), Expect = 6.5
Identities = 6/59 (10%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 159 ERELNSRGYTSGHEPDSYEFSSLGGWVATRASGMKKNLYGNIEDL-LVQVTMVTARGTL 216
++ +RG G + + S + + K ++ +++ +++ + G
Sbjct: 665 PGKIEARGIKKGKIVATDCYQSAEAPHSVALASNKYSVKAGSDEVIRIEIDITDKNGIP 723
>3qpd_A Cutinase 1; alpha-beta hydrolase fold, esterase, hydrolase, mono-
phosphorylated serine residue, secreted, phosphorylated
Ser residue; HET: SEP; 1.57A {Aspergillus oryzae} PDB:
3gbs_A
Length = 187
Score = 26.4 bits (58), Expect = 6.8
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 206 QVTMVTARGTLERPCRGPRVSSGPDF 231
+T + AR + E G GP
Sbjct: 14 PITFIFARASTEPGLLGIST--GPAV 37
>1yvw_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; helix bundle, histidine
biosynthesis, structural genomics, PSI, protein
structure initiative; 2.60A {Bacillus cereus} SCOP:
a.204.1.4
Length = 115
Score = 25.7 bits (57), Expect = 8.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 145 LVACIEAGIIGQDLERELNSR-GYTSGHE 172
V E I +D+ RE+ R G S
Sbjct: 71 FVLLAEKNIALEDVMREVKERNGKLSRVG 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.397
Gapped
Lambda K H
0.267 0.0523 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,580,797
Number of extensions: 203917
Number of successful extensions: 318
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 31
Length of query: 241
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 150
Effective length of database: 4,160,982
Effective search space: 624147300
Effective search space used: 624147300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.8 bits)