RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4131
         (241 letters)



>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia
           coli [TaxId: 562]}
          Length = 265

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 7/78 (8%), Positives = 21/78 (26%)

Query: 132 RRVNSILWLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEFSSLGGWVATRASG 191
            R++ +  L +   V       +    +               S   +S+ G +   + G
Sbjct: 94  LRLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGG 153

Query: 192 MKKNLYGNIEDLLVQVTM 209
                     ++ +   +
Sbjct: 154 SLVQRGPAYTEMSLFARI 171


>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium
           sterolicum [TaxId: 1702]}
          Length = 216

 Score = 33.1 bits (74), Expect = 0.018
 Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 9/108 (8%)

Query: 139 WLDEDNLVACIEAGIIGQDLERELNSRGYTSGHEPDSYEF---------SSLGGWVATRA 189
                       AG   + +  EL        + P              +      A   
Sbjct: 95  NTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAPGVLSIGGALAVNAHGAALPAVGQ 154

Query: 190 SGMKKNLYGNIEDLLVQVTMVTARGTLERPCRGPRVSSGPDFNHVILG 237
           + +  + YG++ +L+ ++T V   GT        R           LG
Sbjct: 155 TTLPGHTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLG 202


>d1h9ma1 b.40.6.2 (A:1-73) Cytoplasmic molybdate-binding protein
          ModG {Azotobacter vinelandii [TaxId: 354]}
          Length = 73

 Score = 23.9 bits (52), Expect = 6.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 41 LGIKLGSEVLSLLEATNVSVSTQGE 65
          L +  G EV+++++A  V + T   
Sbjct: 47 LQLAAGKEVVAVVKAPWVLLMTDSS 71


>d1h9ra2 b.40.6.2 (A:200-261) C-terminal domain of
          molybdate-dependent transcriptional regulator ModE
          {Escherichia coli [TaxId: 562]}
          Length = 62

 Score = 23.4 bits (51), Expect = 7.3
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 41 LGIKLGSEVLSLLEATNVSVST 62
            ++ G  V +   A +V ++T
Sbjct: 40 TSLQQGQNVTAYFNADSVIIAT 61


>d1fx7a3 b.34.1.2 (A:145-230) Iron-dependent regulator IdeR
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 86

 Score = 24.0 bits (52), Expect = 8.0
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 119 PAGNQTQISNVPIRRVNSILWLDEDNLVACIEAGI-IGQDLERELNSRGY----TSGHE 172
           PAG+      V +R++   +  D D +    +AG+     +  E    G       GHE
Sbjct: 14  PAGSPVA---VVVRQLTEHVQGDIDLITRLKDAGVVPNARVTVETTPGGGVTIVIPGHE 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.134    0.397 

Gapped
Lambda     K      H
   0.267   0.0644    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 862,323
Number of extensions: 37691
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 7
Length of query: 241
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,268,006
Effective search space: 200344948
Effective search space used: 200344948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)