RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4132
(473 letters)
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS,
nucleus, protein transport, transc transcription
regulation, transport, endosome; 2.61A {Homo sapiens}
PDB: 2zme_B
Length = 218
Score = 146 bits (369), Expect = 2e-41
Identities = 69/148 (46%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 322 NDDDYYQALGNELIAALIEPLTSAGGTMLLTDAYCRINRARGLELLSPEDLLNSCLALDK 381
+ Y+ L +L L PL GG M LT+ YC +NRARG+ELLSPEDL+N+C L+
Sbjct: 69 SGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEA 128
Query: 382 LPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKH 441
L P+ L+ + SGV V++L+S ++ V E VS+ +T E+F++L +S+++AK
Sbjct: 129 L-KLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKE 187
Query: 442 RLLLAETHGKLCRDQSIEGLRFYENKFL 469
RLLLAE G LCRD S+EGLRFY N F+
Sbjct: 188 RLLLAEKMGHLCRDDSVEGLRFYPNLFM 215
Score = 59.3 bits (143), Expect = 3e-10
Identities = 28/51 (54%), Positives = 42/51 (82%)
Query: 164 ETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRD 214
ET NI+ AF+DL++LM AKEMVE+SK+I+NKI ++QG+ITED++ + +
Sbjct: 1 ETDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDETIRFKS 51
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral
budding, ubiquitin complex, protein transport; 2.70A
{Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Length = 140
Score = 127 bits (320), Expect = 2e-35
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFW----QKDITLC 56
MDRF + S L +E+ V++ VR+YDGE K +F G L+L++HRL W + +
Sbjct: 3 MDRFVWTSGLLEINETLVIQQRGVRIYDGEEKIKFDAGTLLLSTHRLIWRDQKNHECCMA 62
Query: 57 LALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLSFREGIQNE 116
+ LS I E+A + KI+++L A P K GP +S Y+KLSF+E Q E
Sbjct: 63 ILLSQIVFIEEQAAG---IGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIE 119
Query: 117 FLDALKSTVDAKIW 130
F L + + W
Sbjct: 120 FYRRLSEEMTQRRW 133
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 134 bits (336), Expect = 4e-34
Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 16/164 (9%)
Query: 319 DIDNDDDYYQALGNELIAALIEP-----LTSAGGTMLLTDAYCRINRAR--GLELLSPED 371
N + + + E+ + + + L D Y N++ G L+SP +
Sbjct: 400 KFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPME 459
Query: 372 LLNSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASFVEKTYEIVSQNVFVTVEQFSRL 431
+ +C + L + + L + + + + + EK +++ N + + +++
Sbjct: 460 MREACERFEHLGLNELKLVKVNKRILCVTSEKFDV--VKEKLVDLIGDNPGSDLLRLTQI 517
Query: 432 AS-------VSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKF 468
S +L I L G L D+ + G+ +Y+N +
Sbjct: 518 LSSNNSKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSY 561
Score = 78.6 bits (192), Expect = 9e-16
Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 90 PGKNLGPSATSAYDYVKLSFREGIQNEFLDALKSTVDAKIWT----VQNKSAQQTKLREI 145
+ S S+ ++V+LSFR+ F A + ++ + + N++ ++
Sbjct: 241 SALSSSSSTGSSTEFVQLSFRKSDGVLFSQATERALENILTEKNKHIFNQNVVSVNGVDM 300
Query: 146 KT-------------------RTGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEM 186
+ R GI +E++ + NNA DLN+LMS+A +
Sbjct: 301 RKGASSHEYNNEVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSI 360
Query: 187 VEISKNISNKIINRQGEITEDDSNKDRD 214
+ KN + + + + ++ + +
Sbjct: 361 ERLYKNSNITMKTKTLNLQDESTVNEPK 388
Score = 67.0 bits (162), Expect = 5e-12
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 15/125 (12%)
Query: 1 MDRFEY------CSFELSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFW---- 49
M+ + Y L E + +V LY G++K Q QRG + LTS R+ +
Sbjct: 1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 60
Query: 50 -QKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLS 108
+L L L + S F LT ++IL+ LG SA +A V +
Sbjct: 61 KPTQNSLGLELDDLAYV--NYSSGF-LTRSPRLILFFKDPSSKDELGKSAETASADVVST 117
Query: 109 FREGI 113
+ I
Sbjct: 118 WVCPI 122
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal,
trafficking, protein complex, transport protein; 3.60A
{Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Length = 169
Score = 125 bits (314), Expect = 4e-34
Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 12/159 (7%)
Query: 322 NDDDYYQALGNELIAALIEPLTS-----AGGTMLLTDAYCRINRAR--GLELLSPEDLLN 374
N + + + E+ + + L D Y N++ G L+SP ++
Sbjct: 8 NKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMRE 67
Query: 375 SCLALDKLPDSPIYLKTYSSGVKVLQLKSCED-----ASFVEKTYEIVSQNVFVTVEQFS 429
+C + L + + L + + + + + + + + +
Sbjct: 68 ACERFEHLGLNELKLVKVNKRILCVTSEKFDVVKEKLVDLIGDNPGSDLLRLTQILSSNN 127
Query: 430 RLASVSLVIAKHRLLLAETHGKLCRDQSIEGLRFYENKF 468
++ +L I L G L D+ + G+ +Y+N +
Sbjct: 128 SKSNWTLGILMEVLQNCVDEGDLLIDKQLSGIYYYKNSY 166
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 120 bits (302), Expect = 2e-32
Identities = 72/85 (84%), Positives = 81/85 (95%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV 298
I+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD D NGEVDFKEFI+GV
Sbjct: 5 IKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFKEFIEGV 64
Query: 299 SQFSVKGDRESKLKFAFRIYDIDND 323
SQFSVKGD+E KL+FAFRIYD+D D
Sbjct: 65 SQFSVKGDKEQKLRFAFRIYDMDKD 89
Score = 48.8 bits (117), Expect = 4e-07
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 161 KQKETSS--NINNAFK--DLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDD 208
+ + AF+ D+++ L + K MV N+ + + + + T +
Sbjct: 67 FSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVG--NNLKDTQLQQIVDKTIIN 124
Query: 209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDI 239
++KD DG+I+F+EFC++VG DIHKKMVVD+
Sbjct: 125 ADKDGDGRISFEEFCAVVGGLDIHKKMVVDV 155
Score = 48.0 bits (115), Expect = 7e-07
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
D +G+++F+EF V + K + ++L FR D+D G +S E
Sbjct: 49 TDGNGEVDFKEFIEGV--SQFSVKGDKE-QKLRFAFRIYDMDKDGYISNGELFQVLKMMV 105
Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKL 311
+L + Q +V + I D+D +G + F+EF V D K+
Sbjct: 106 GNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVG----GLDIHKKM 151
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 110 bits (276), Expect = 2e-28
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
+ RL RFR LD + G LS + + L NPL R+I+ F D + VDF F++
Sbjct: 27 SLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFPGFVRV 86
Query: 298 VSQF----------------SVKGDRESKLKFAFRIYDIDND 323
++ F R +KL +AF++YD+D D
Sbjct: 87 LAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRD 128
Score = 50.9 bits (122), Expect = 1e-07
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 26/127 (20%)
Query: 211 KDRDGKINFQEFCSI------VGNTDIHKKMVVDIRRLGKRFRKL-------DLDNSGAL 257
D +++F F + V + D + L R KL DLD G +
Sbjct: 72 PDGSQRVDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKI 131
Query: 258 SIDEF---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRE 308
S E + + E Q + R + DED +G V F EF + + K D E
Sbjct: 132 SRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE----KMDVE 187
Query: 309 SKLKFAF 315
K+
Sbjct: 188 QKMSIRI 194
Score = 44.7 bits (106), Expect = 2e-05
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 172 AFK--DLNQ--------LMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQE 221
AF+ DL++ ++ + + MV ++ + + + T ++++D DG ++F E
Sbjct: 119 AFQLYDLDRDGKISRHEMLQVLRLMVG--VQVTEEQLENIADRTVQEADEDGDGAVSFVE 176
Query: 222 FCSIVGNTDIHKKMVVDI 239
F + D+ +KM + I
Sbjct: 177 FTKSLEKMDVEQKMSIRI 194
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 109 bits (275), Expect = 4e-28
Identities = 37/102 (36%), Positives = 54/102 (52%), Gaps = 15/102 (14%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQG 297
I RL RF LD +G LS ++F +PEL NPL R+I+ F + +V+F+ F++
Sbjct: 27 QITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFRGFMRT 86
Query: 298 VSQFSVKGD---------------RESKLKFAFRIYDIDNDD 324
++ F D R +KL FAFR+YD+D DD
Sbjct: 87 LAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDD 128
Score = 54.0 bits (130), Expect = 1e-08
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 25/126 (19%)
Query: 211 KDRDGKINFQEFCSI------VGNTDIHKKMVVDIRRLGKR------FRKLDLDNSGALS 258
+ + ++NF+ F + + + K + + FR DLD +S
Sbjct: 72 SEGEDQVNFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKIS 131
Query: 259 IDEF---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES 309
DE +++ + Q + R I D+D + + F EF++ + K D E
Sbjct: 132 RDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLE----KVDVEQ 187
Query: 310 KLKFAF 315
K+ F
Sbjct: 188 KMSIRF 193
Score = 43.2 bits (102), Expect = 6e-05
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 154 IERNIVEKQKETSSNINNAFK--DLNQ--------LMSMAKEMVEISKNISNKIINRQGE 203
+ N E S+ ++ AF+ DL++ L+ + + MV NIS++ + +
Sbjct: 100 KDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMV--GVNISDEQLGSIAD 157
Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDI 239
T ++++D D I+F EF ++ D+ +KM +
Sbjct: 158 RTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRF 193
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 107 bits (268), Expect = 4e-27
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 238 DIRRLGKRFRKLD--LDNSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDRNGEVDFK 292
++ L + F+KL + + G + +EF + ++N R+ D+FD RNG ++F
Sbjct: 35 EVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVIEFG 94
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
EF++ + F K+KFAF++YD+
Sbjct: 95 EFVRSLGVFHPSAPVHEKVKFAFKLYDLRQT 125
Score = 55.6 bits (134), Expect = 4e-09
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 15/102 (14%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
R+G I F EF + H V ++ F+ DL +G + +E
Sbjct: 85 VKRNGVIEFGEF--VRSLGVFHPSAPVH-EKVKFAFKLYDLRQTGFIEREELKEMVVALL 141
Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
+ L E +V + D +G++D E+ VS
Sbjct: 142 HESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSL 183
Score = 33.6 bits (77), Expect = 0.087
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 172 AFK--DLNQ--------LMSMAKEMVEISK-NISNKIINRQGEITEDDSNKDRDGKINFQ 220
AFK DL Q L M ++ S+ +S +I + +++ DGKI+
Sbjct: 116 AFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Query: 221 EFCSIVG-NTDIHKKM 235
E+ V N + K M
Sbjct: 176 EWKDFVSLNPSLIKNM 191
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 104 bits (260), Expect = 8e-26
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 238 DIRRLGKRFRKLD--LDNSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDRNGEVDFK 292
+I L + F+K+ + + G ++ +EF + +++ RV D+FD NG + F+
Sbjct: 46 EIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGILGFE 105
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
EF + +S F + K+ F+F++YD+
Sbjct: 106 EFARALSVFHPNAPIDDKIHFSFQLYDLKQQ 136
Score = 51.7 bits (124), Expect = 8e-08
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 15/102 (14%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
+G + F+EF + H +D ++ F+ DL G + E
Sbjct: 96 TKHNGILGFEEF--ARALSVFHPNAPID-DKIHFSFQLYDLKQQGFIERQEVKQMVVATL 152
Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
M+L + ++ + + D +G++D +E+ V +
Sbjct: 153 AESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLR 194
Score = 35.2 bits (81), Expect = 0.025
Identities = 13/63 (20%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG-NTDIH 232
+++ Q++ N+ + +I + T ++++ DGKI+ +E+ S+V + +
Sbjct: 142 QEVKQMVVATLAESG--MNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLL 199
Query: 233 KKM 235
K M
Sbjct: 200 KNM 202
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 102 bits (255), Expect = 1e-25
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 238 DIRRLGKRFRKL--------DLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-RNGE 288
+I +RF +L + + ++ +SLPEL+ NP +R+ +F
Sbjct: 18 EILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDS 77
Query: 289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ F++F+ +S FS + K +AFRI+D D+D
Sbjct: 78 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDD 112
Score = 50.2 bits (120), Expect = 2e-07
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------ 262
S ++F++F ++ + FR D D+ G L+ ++
Sbjct: 70 STSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYA---FRIFDFDDDGTLNREDLSRLVNC 126
Query: 263 -------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
L + L+ +++ D DR+G ++ EF +S+
Sbjct: 127 LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 171
Score = 34.7 bits (80), Expect = 0.031
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 179 LMSMAKEMVEISK--NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNT-DIHKKM 235
L + + + +S + + + ++S+ DRDG IN EF ++ + D
Sbjct: 120 LSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSF 179
Query: 236 VVDI 239
+ +
Sbjct: 180 KIVL 183
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 102 bits (255), Expect = 3e-25
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 238 DIRRLGKRFRKL--------DLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-RNGE 288
+I +RF +L + + ++ +SLPEL+ NP +R+ +F
Sbjct: 49 EILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPAKDS 108
Query: 289 VDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ F++F+ +S FS + K +AFRI+D D+D
Sbjct: 109 LSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDD 143
Score = 47.9 bits (114), Expect = 2e-06
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 209 SNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------ 262
S ++F++F ++ + FR D D+ G L+ ++
Sbjct: 101 STSPAKDSLSFEDFLDLLSVFSDTATPDIKSHYA---FRIFDFDDDGTLNREDLSRLVNC 157
Query: 263 -------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
L + L+ +++ D DR+G ++ EF +S+
Sbjct: 158 LTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 202
Score = 36.8 bits (85), Expect = 0.009
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 170 NNAFKDLNQLMSMAKEMVEISK--NISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG 227
++ + L + + + +S + + + ++S+ DRDG IN EF ++
Sbjct: 142 DDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 201
Query: 228 NT-DIHKKMVVDI 239
+ D + +
Sbjct: 202 RSPDFASSFKIVL 214
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 94.5 bits (235), Expect = 1e-22
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKE 293
++ K+F L+ SG L + EF ++ N V+ + FD + + +DF E
Sbjct: 23 QLQEWYKKF--LEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFLE 80
Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
++ ++ +G E KLK+ F+IYD D +
Sbjct: 81 YVAALNLVL-RGTLEHKLKWTFKIYDKDRN 109
Score = 48.7 bits (116), Expect = 8e-07
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 25/111 (22%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
+ D I+F E+ + + + + +L F+ D D +G + E
Sbjct: 70 TNGDNTIDFLEY--VAALNLVLRGTLEH--KLKWTFKIYDKDRNGCIDRQELLDIVESIY 125
Query: 263 -------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
L +V R+ + DE+ +G++ EF++G +
Sbjct: 126 KLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
Score = 32.1 bits (73), Expect = 0.29
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 243 GKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFS 302
G++F + + +GA+ L + +E +G + EF +
Sbjct: 2 GQQFSWEEAEENGAVG--------AADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPD 53
Query: 303 VKGDRESKLKFAFRIYDIDND 323
+ ++ FR +D + D
Sbjct: 54 -NEEATQYVEAMFRAFDTNGD 73
Score = 27.9 bits (62), Expect = 6.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 211 KDRDGKINFQEFCSIVGNTD 230
++ DG+++ EF
Sbjct: 159 ENGDGQLSLNEFVEGARRDK 178
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 91.8 bits (228), Expect = 1e-21
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
+ + F + SG ++ EF +L + N + +V + FD +++G VDF
Sbjct: 20 ETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFL 77
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
EFI V+ + E KLK+ F++YD D +
Sbjct: 78 EFIAAVNLIM-QEKMEQKLKWYFKLYDADGN 107
Score = 54.0 bits (130), Expect = 1e-08
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 20/122 (16%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
++DG ++F EF I I ++ + +L F+ D D +G++ +E
Sbjct: 68 TNKDGFVDFLEF--IAAVNLIMQEKMEQ--KLKWYFKLYDADGNGSIDKNELLDMFMAVQ 123
Query: 263 --MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDI 320
L + V D + +GE+ +EFI G+++ + L+ ++ +D
Sbjct: 124 ALNGQQTLSPEEFINLVFHKIDINNDGELTLEEFINGMAKD------QDLLEIVYKSFDF 177
Query: 321 DN 322
N
Sbjct: 178 SN 179
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 89.1 bits (221), Expect = 8e-21
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ-----NPLVQRVIDIFDEDRNGEVDFK 292
+ + K+F + SG L++ EF L+ N V+++ + FD +++G +DF
Sbjct: 15 ECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFM 72
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
E++ +S KG + KL++ F++YD+D +
Sbjct: 73 EYVAALSLVL-KGKVDQKLRWYFKLYDVDGN 102
Score = 51.3 bits (123), Expect = 1e-07
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
++DG I+F E+ + + + K V +L F+ D+D +G + E
Sbjct: 63 FNKDGYIDFMEY--VAALSLVLKGKVDQ--KLRWYFKLYDVDGNGCIDRGELLNIIKAIR 118
Query: 263 -MSLPELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
++ V D D + +GE+ +EF++GV +
Sbjct: 119 AINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQK 159
Score = 32.1 bits (73), Expect = 0.24
Identities = 14/92 (15%), Positives = 36/92 (39%)
Query: 170 NNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNT 229
N D +L+++ K + I++ + D + + DG+++ +EF V
Sbjct: 101 GNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGVQKD 160
Query: 230 DIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE 261
++ ++ L + + D + +E
Sbjct: 161 EVLLDILTRSLDLTHIVKLIQNDGKNPHAPEE 192
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport,
ESCRT-II, lipid-binding, multivesicular bodies,
membrane; 1.9A {Saccharomyces cerevisiae} SCOP:
b.55.1.12
Length = 145
Score = 87.0 bits (215), Expect = 1e-20
Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 25/143 (17%)
Query: 1 MDRFEY------CSFELSPDESPVLKHSNVRLYDGENKS-QFQRGELILTSHRLFW---- 49
M+ + Y L E + +V LY G++K Q QRG + LTS R+ +
Sbjct: 9 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSKILQRQRGRIFLTSQRIIYIDDA 68
Query: 50 -QKDITLCLALSYIQNAVEEAKSMFNLTAGRKIILYLSKAVPGKNLGPSATSAYDYVKLS 108
+L L L + + LT ++IL+ +V+LS
Sbjct: 69 KPTQNSLGLELDDLAYVNYSSGF---LTRSPRLILFFKDPSSSTE----------FVQLS 115
Query: 109 FREGIQNEFLDALKSTVDAKIWT 131
FR+ F A + ++ +
Sbjct: 116 FRKSDGVLFSQATERALENILTE 138
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 86.4 bits (214), Expect = 7e-20
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
+I+ K F + SG LS++EF P + + V FD + +G +DF+
Sbjct: 26 EIQEWYKGFLRDC--PSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFR 83
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
EFI +S S +G E KLK+AF +YD+D +
Sbjct: 84 EFIIALSVTS-RGKLEQKLKWAFSMYDLDGNG 114
Score = 49.8 bits (119), Expect = 3e-07
Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 20/107 (18%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
+ + DG I+F+EF I+ + + + +L F DLD +G +S E
Sbjct: 73 DANGDGTIDFREF--IIALSVTSRGKLEQ--KLKWAFSMYDLDGNGYISKAEMLEIVQAI 128
Query: 263 ---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
M E +++ D +R+G++ +EFI+G
Sbjct: 129 YKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 83.7 bits (207), Expect = 5e-19
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
++++ K F K SG L F P V ++FDE+++G ++F
Sbjct: 26 EVQQWYKGFIKDC--PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFS 83
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
EFIQ +S S +G + KL++AF++YD+DND
Sbjct: 84 EFIQALSVTS-RGTLDEKLRWAFKLYDLDNDG 114
Score = 49.1 bits (117), Expect = 5e-07
Identities = 26/129 (20%), Positives = 54/129 (41%), Gaps = 27/129 (20%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
+ ++++DG+I F EF I + + + + +L F+ DLDN G ++ +E
Sbjct: 70 NVFDENKDGRIEFSEF--IQALSVTSRGTLDE--KLRWAFKLYDLDNDGYITRNEMLDIV 125
Query: 263 ------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK 310
+ E V R+ + D++ +G++ +EF +G +
Sbjct: 126 DAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSK-------ADPS 178
Query: 311 LKFAFRIYD 319
+ A +YD
Sbjct: 179 IVQALSLYD 187
Score = 30.2 bits (68), Expect = 1.1
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 274 VQRVIDIF-DEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD 325
VQ+ F + +G++D F + QF GD F F ++D + D
Sbjct: 27 VQQWYKGFIKDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGR 79
Score = 29.0 bits (65), Expect = 2.2
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 174 KDLNQLMSMAKEMV--EISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIV 226
++ ++ +MV + ++ + +K+ DGK+ QEF
Sbjct: 119 NEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGS 173
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 84.9 bits (210), Expect = 6e-19
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
+++ L + F+ SG ++ + F + P+ + + FD D NG V F+
Sbjct: 65 ELQILYRGFKNEC--PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSFE 122
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
+FI+G+S +G + KL +AF +YDI+ D
Sbjct: 123 DFIKGLSILL-RGTVQEKLNWAFNLYDINKDG 153
Score = 49.5 bits (118), Expect = 5e-07
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 20/106 (18%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
D +G ++F++F I G + + + V + +L F D++ G ++ +E
Sbjct: 113 TDHNGAVSFEDF--IKGLSILLRGTVQE--KLNWAFNLYDINKDGYITKEEMLDIMKAIY 168
Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
L E V+ D++++G V EFI+ +
Sbjct: 169 DMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214
Score = 32.9 bits (75), Expect = 0.17
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 240 RRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIF-DEDRNGEVDFKEFIQGV 298
L + + L + ELQ + F +E +G V+ + F +
Sbjct: 38 DELEMATVRHRPEALELLEAQSKFTKKELQ------ILYRGFKNECPSGVVNEETFKEIY 91
Query: 299 SQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAAL 338
SQF +GD + F F +D D++ + I L
Sbjct: 92 SQFFPQGDSTTYAHFLFNAFDTDHNGAVSF---EDFIKGL 128
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 80.6 bits (199), Expect = 5e-18
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
+++ L + F+ SG ++ + F + P + + + FD + G V F+
Sbjct: 19 ELQVLYRGFKNEX--PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFE 76
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
+F+ +S +G KL++ F +YDI+ D
Sbjct: 77 DFVTALSILL-RGTVHEKLRWTFNLYDINKDG 107
Score = 47.5 bits (113), Expect = 2e-06
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 20/106 (18%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
+ G + F++F V I + V +L F D++ G ++ +E
Sbjct: 67 TTQTGSVKFEDF---VTALSILLRGTVH-EKLRWTFNLYDINKDGYINKEEMMDIVKAIY 122
Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
L E V D++++G V EF++ +
Sbjct: 123 DMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQE 168
Score = 28.2 bits (63), Expect = 3.9
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 274 VQRVIDIF-DEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD 325
+Q + F +E +G V+ + F Q +QF GD + + F +D
Sbjct: 20 LQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 72
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 80.6 bits (199), Expect = 7e-18
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 216 KINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQ 270
K++ + +V +T KK ++++ K F K SG L+ EF P
Sbjct: 7 KLSQDQLQDLVRSTRFDKK---ELQQWYKGFFKDC--PSGHLNKSEFQKIYKQFFPFGDP 61
Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
+ + V ++FD D+NG +DFKEFI +S S +G+ KL +AF++YD+DN+
Sbjct: 62 SAFAEYVFNVFDADKNGYIDFKEFICALSVTS-RGELNDKLIWAFQLYDLDNNG 114
Score = 46.4 bits (110), Expect = 4e-06
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 27/126 (21%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
+ D++G I+F+EF I + + + D +L F+ DLDN+G +S DE
Sbjct: 73 DADKNGYIDFKEF--ICALSVTSRGELND--KLIWAFQLYDLDNNGLISYDEMLRIVDAI 128
Query: 263 ---------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF 313
+ E V ++ ++ D++++G++ +EF +G R+ +
Sbjct: 129 YKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSK-------RDPTIVS 181
Query: 314 AFRIYD 319
A +YD
Sbjct: 182 ALSLYD 187
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 80.0 bits (197), Expect = 2e-17
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
++ + F K +G ++ +F S+ P+ Q V FD + +G +DFK
Sbjct: 34 ELCSWYQSFLKDC--PTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFK 91
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
E++ + + G KL++AF +YD+D +
Sbjct: 92 EYVIALHMTT-AGKTNQKLEWAFSLYDVDGNG 122
Score = 46.9 bits (111), Expect = 4e-06
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 22/109 (20%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL---- 265
+ + DG ++F+E+ + T K ++L F D+D +G +S +E + +
Sbjct: 81 DSNLDGTLDFKEYVIALHMTTAGKTN----QKLEWAFSLYDVDGNGTISKNEVLEIVMAI 136
Query: 266 --------------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
E +++ F ++ + ++ KEFI+G
Sbjct: 137 FKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 79.6 bits (196), Expect = 3e-17
Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFK 292
+++ L + F+ SG ++ + F + P + + + FD + G V F+
Sbjct: 52 ELQVLYRGFKNEC--PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFE 109
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
+F+ +S +G KL++ F +YDI+ D
Sbjct: 110 DFVTALSILL-RGTVHEKLRWTFNLYDINKDG 140
Score = 49.6 bits (118), Expect = 5e-07
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 26/110 (23%)
Query: 210 NKDRDGKINFQEFC---SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
+ + G + F++F SI+ +H+K L F D++ G ++ +E
Sbjct: 99 DTTQTGSVKFEDFVTALSILLRGTVHEK-------LRWTFNLYDINKDGYINKEEMMDIV 151
Query: 263 ------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
L E V D++++G V EF++ +
Sbjct: 152 KAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201
Score = 29.9 bits (67), Expect = 1.6
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 174 KDLNQLMSMAKEMV--EISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTD 230
+++ ++ +M+ + + ++ +K++DG + EF D
Sbjct: 145 EEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDD 203
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 76.8 bits (189), Expect = 1e-16
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
+I++ K F + SG L+ ++F+ P + +FD+D NG + F+
Sbjct: 26 EIQQWHKGFLRDC--PSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGFIHFE 83
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
EFI +S S +G E KL +AF +YD+++D
Sbjct: 84 EFITVLSTTS-RGTLEEKLSWAFELYDLNHDG 114
Score = 43.7 bits (103), Expect = 3e-05
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 33/129 (25%)
Query: 210 NKDRDGKINFQEFC---SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
+KD +G I+F+EF S + +K L F DL++ G ++ DE
Sbjct: 73 DKDNNGFIHFEEFITVLSTTSRGTLEEK-------LSWAFELYDLNHDGYITFDEMLTIV 125
Query: 263 ------------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK 310
++ E V+++ + D++ +G + EF +G +
Sbjct: 126 ASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSK-------VDPS 178
Query: 311 LKFAFRIYD 319
+ A +YD
Sbjct: 179 IIGALNLYD 187
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 75.5 bits (185), Expect = 2e-15
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDRNGEVDFK 292
+++ L + F+ +G + D F P+ + + FD D NG + F+
Sbjct: 92 ELQSLYRGFKNEC--PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFE 149
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
+F+ G+S +G KLK+AF +YDI+ D
Sbjct: 150 DFVVGLSILL-RGTVHEKLKWAFNLYDINKDG 180
Score = 49.7 bits (118), Expect = 6e-07
Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 25/166 (15%)
Query: 156 RNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDD-----SN 210
+ + K T + + ++ + K I ++ + T +
Sbjct: 80 DQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFD 139
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
D +G I+F++F +VG + + + V + +L F D++ G ++ +E
Sbjct: 140 ADGNGAIHFEDF--VVGLSILLRGTVHE--KLKWAFNLYDINKDGCITKEEMLAIMKSIY 195
Query: 263 --------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
L E V+R D +++G V EF++ +
Sbjct: 196 DMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQK 241
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 67.8 bits (166), Expect = 2e-14
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPL-VQRVIDIFDEDRNGEVDFKEFI 295
++ RL F D + SG L +EF +L EL+ P + V D DR+G + F+EF
Sbjct: 25 ELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFA 84
Query: 296 QG 297
+G
Sbjct: 85 RG 86
Score = 30.4 bits (69), Expect = 0.30
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 279 DIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
D +R+G ++ +EF ++ V+ + + F+ D D D
Sbjct: 34 AACDANRSGRLEREEFRALCTELRVR---PADAEAVFQRLDADRD 75
Score = 26.5 bits (59), Expect = 5.4
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 211 KDRDGKINFQEFCS 224
DRDG I FQEF
Sbjct: 72 ADRDGAITFQEFAR 85
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 69.1 bits (169), Expect = 2e-13
Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 26/164 (15%)
Query: 186 MVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSIVGNTD-----IHKKMVVD 238
+ E+ + + E+ D + DGKI E ++ + + +
Sbjct: 42 IQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKS 101
Query: 239 IRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPLVQRVIDIFDEDRN 286
K +RK D D+SG + +E ++ + + ++ +FD + +
Sbjct: 102 CEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNND 161
Query: 287 GEVDFKEFIQ-------GVSQFSVKGDRESKLKFAFRIYDIDND 323
G+++ E + + +F + AF +YD D +
Sbjct: 162 GKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGN 205
Score = 51.4 bits (123), Expect = 2e-07
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 18/96 (18%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNP---------LVQRVIDIFDEDRNGEVDFKEFI 295
+ D D SG L E + EL Q ++ +D + + +G++ E
Sbjct: 22 WLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELA 81
Query: 296 QGVSQFSV--------KGDRESKLKFAFRIYDIDND 323
+ + + +R YD D+
Sbjct: 82 HVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHS 117
Score = 50.6 bits (121), Expect = 3e-07
Identities = 21/141 (14%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 170 NNAFKDLNQLMSMAKEMVE-ISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGN 228
++ F + +L + K+++E +K + + + ++ + + DGK+ E ++
Sbjct: 116 HSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLPV 175
Query: 229 TD----IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL---------PELQQNPLVQ 275
+ + + + + K F D D +G + +E +L EL N +
Sbjct: 176 QENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNIST 235
Query: 276 RVIDIFDEDRNGEVDFKEFIQ 296
+I G++ +
Sbjct: 236 YKKNIMALSDGGKLYRTDLAL 256
Score = 30.2 bits (68), Expect = 1.2
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 14/77 (18%)
Query: 160 EKQKETSSNINNAFK----------DLNQLMSMAKEMVE-ISKNISNKIINRQGEITEDD 208
+ K N AF+ D N+L ++ K++ E + + I+ +
Sbjct: 184 QGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMA- 242
Query: 209 SNKDRDGKINFQEFCSI 225
GK+ + I
Sbjct: 243 --LSDGGKLYRTDLALI 257
Score = 29.8 bits (67), Expect = 1.9
Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRK--LDLDNSGALSIDEFMSLPEL 268
+D +G I+ E +++ + K +DI + ++K + L + G L + +
Sbjct: 202 QDGNGYIDENELDALLKDLCEKNKQELDINNI-STYKKNIMALSDGGKLYRTDLALILSA 260
Query: 269 QQN 271
N
Sbjct: 261 GDN 263
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 69.5 bits (170), Expect = 3e-13
Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 20/144 (13%)
Query: 183 AKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRL 242
+++ ++ ++ I + D G++++ + + D+ L
Sbjct: 141 FQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVA----------VANDLAAL 190
Query: 243 GKRFRKLDLDNSGALSIDEFMS-LPELQQN--PLVQRVIDIFDEDRNGEVDFKEFIQGVS 299
FRK+D +++G LS EF L + + + DED + +V F E++
Sbjct: 191 VADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGL 250
Query: 300 QFSVKGDRESKLKFAFRIYDIDND 323
L+ + D D
Sbjct: 251 C-------LLVLRILYAFADFDKS 267
Score = 60.6 bits (147), Expect = 2e-10
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 17/98 (17%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM 263
D +D + F E+ + + + L + D D SG LS +E
Sbjct: 229 FRYAD--EDESDDVGFSEYV----------HLGLCLLVLRILYAFADFDKSGQLSKEEVQ 276
Query: 264 SL-----PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ + + D D + + ++EF+
Sbjct: 277 KVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQEFVM 314
Score = 49.8 bits (119), Expect = 9e-07
Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
+ +G ++ +EF KK V D FR D D S + E++ L
Sbjct: 199 TNSNGTLSRKEFREHFVRLGFDKKSVQD-----ALFRYADEDESDDVGFSEYVHLGLCLL 253
Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
++ + D D++G++ +E + + + K + F + D+D+
Sbjct: 254 V--LRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDS 304
Score = 35.6 bits (82), Expect = 0.026
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D+ G+++ +E ++ + I + F +D+D+S +LS EF+ L
Sbjct: 264 FDKSGQLSKEEVQKVLEDAHIPESARKKFEHQ---FSVVDVDDSKSLSYQEFVML 315
Score = 34.4 bits (79), Expect = 0.070
Identities = 24/191 (12%), Positives = 61/191 (31%), Gaps = 33/191 (17%)
Query: 163 KETSSNINNAFKDLNQLMSMAKEMVE-ISKNISNKIINRQGEITEDDSNKDRDGKINFQE 221
K+ N+ K L+ KE + + I+ K ++ ++ E D + + + +E
Sbjct: 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYD--QKVQNEFDARE 72
Query: 222 FCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIF 281
+RL + L+ D SG + + + +++++
Sbjct: 73 RAEREREAARGDAAAEK-QRLASLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFLSS 131
Query: 282 DEDRNGEVDFKEFIQGVSQ-----------------------------FSVKGDRESKLK 312
+G+ F++ Q +++ + + L
Sbjct: 132 AVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALV 191
Query: 313 FAFRIYDIDND 323
FR D +++
Sbjct: 192 ADFRKIDTNSN 202
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 67.0 bits (164), Expect = 5e-13
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEF 294
I+ L + FR+LD D S +L DEF L +L + V +D + +G +D +EF
Sbjct: 36 IQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLEEF 95
Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
++ + + RE+ + AF D D
Sbjct: 96 LRALRP-PMSQAREAVIAAAFAKLDRSGD 123
Score = 53.1 bits (128), Expect = 2e-08
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 20/113 (17%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
++ G ++ +EF + + F KLD G +++D+ + +
Sbjct: 84 RNGSGTLDLEEFLRAL----RPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRA 139
Query: 271 NPLV-----------QRVIDIFDE-DRNGEVDFKEFIQ---GVSQFSVKGDRE 308
+P V +R +D FD +++G+V EF GVS S+ D E
Sbjct: 140 HPKVRSGEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYSGVSA-SMNTDEE 191
Score = 28.9 bits (65), Expect = 2.7
Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
+ DS+ ++DG++ EF
Sbjct: 158 LDNFDSS-EKDGQVTLAEFQDY 178
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 65.8 bits (161), Expect = 1e-12
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 21/117 (17%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLP 266
K+ G+I F EF + I + + FRK D G L +E +S
Sbjct: 74 KNHSGEITFDEFKD----------LHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSG 123
Query: 267 ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
Q ++ FD R G + F ++++ +++ F YD +
Sbjct: 124 YQVSEQTFQALMRKFDRQRRGSLGFDDYVELSI-------FVCRVRNVFAFYDRERT 173
Score = 53.1 bits (128), Expect = 2e-08
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
FR +D D SGA+S+ E + L ++++ ++D++ +GE+ F EF
Sbjct: 33 FRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHH-- 90
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
++ FR D D
Sbjct: 91 -----FILSMREGFRKRDSSGD 107
Score = 46.9 bits (112), Expect = 3e-06
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 29/124 (23%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRK---------LDLDNSGALSIDE 261
D G I+ E + + G F D ++SG ++ DE
Sbjct: 38 TDGSGAISVPELNAA-------------LSSAGVPFSLATTEKLLHMYDKNHSGEITFDE 84
Query: 262 FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR--ESKLKFAFRIYD 319
F L + ++ D +G +D E + G + E + R +D
Sbjct: 85 FKDLHHFILS--MREGFRKRDSSGDGRLDSNEVRAALLSS---GYQVSEQTFQALMRKFD 139
Query: 320 IDND 323
Sbjct: 140 RQRR 143
Score = 41.5 bits (98), Expect = 2e-04
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSID--EFMSL 265
+ R G + F ++ ++ + + R+ F D + +G ++ F+
Sbjct: 140 RQRRGSLGFDDYV----------ELSIFVCRVRNVFAFYDRERTGQVTFTFDTFIGG 186
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 67.4 bits (164), Expect = 1e-12
Identities = 26/181 (14%), Positives = 70/181 (38%), Gaps = 30/181 (16%)
Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTD-- 230
K+L+ + ++ I+++ + + + + DG++ +E +++ +
Sbjct: 30 GKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMILPQEEN 89
Query: 231 -----IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPL 273
+ + + K +RK D D+SG +S E +P + +
Sbjct: 90 FLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEY 149
Query: 274 VQRVIDIFDEDRNGEVDFKEFIQGVS-----------QFSVKGDRESKLKFAFRIYDIDN 322
++ IFD++++G +D + + ++ S + +R+ + F YD+
Sbjct: 150 TDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSR 209
Query: 323 D 323
Sbjct: 210 T 210
Score = 50.8 bits (121), Expect = 3e-07
Identities = 20/135 (14%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 182 MAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTD--------IHK 233
+ ++ K I ++ + +K++DG+++ + I+ +
Sbjct: 130 LKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARILALQENFLLQFKMDAS 189
Query: 234 KMVVDIRRLGKRFRKLDLDNSGALSIDEFM----SLPELQQNPL--------VQRVIDIF 281
V R K F D+ +GAL E + EL + + + ++
Sbjct: 190 SQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHC 249
Query: 282 DEDRNGEVDFKEFIQ 296
D +++G++ E
Sbjct: 250 DMNKDGKIQKSELAL 264
Score = 48.1 bits (114), Expect = 2e-06
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 24/111 (21%)
Query: 237 VDIRRLGKRFRKLDLDNSGALSIDEFMS--------------LPELQQNPLVQRVIDIFD 282
+D + ++ D D++G + E + + + + + + +D
Sbjct: 8 LDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYD 67
Query: 283 EDRNGEVDFKEFIQGVSQFSV----------KGDRESKLKFAFRIYDIDND 323
+G + +E + D + +R YD D+
Sbjct: 68 ATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSS 118
Score = 33.1 bits (75), Expect = 0.15
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSIVGNTD 230
DL +++++ + + K ++ + R+ + + + R G + E V +
Sbjct: 167 LNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMM 226
Query: 231 IHKKMVVDIRRLGKR----FRKLDLDNSGALSIDEFMSLPELQQNP 272
+ + L K D++ G + E L+ P
Sbjct: 227 ELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLGLKHKP 272
Score = 28.5 bits (63), Expect = 4.4
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 142 LREIKTRTGIVGIERNIVEKQKETSSNINNAFK----------DLNQLMSMAKEMVE-IS 190
R + + + + Q E + F + ++ K+M+E +
Sbjct: 171 ARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVR 230
Query: 191 KNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVG 227
+IS +++ E + ++DGKI E +G
Sbjct: 231 PSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 65.0 bits (159), Expect = 1e-12
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDRNGEVDFKEFI 295
I+ + + F KLD +++G+LS E + L + + R++ D + G + + EF+
Sbjct: 37 HIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITYTEFM 96
Query: 296 QGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNELI 335
G + K + LK AF D D D D + ++++
Sbjct: 97 AGCYR--WKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKVL 139
Score = 45.0 bits (107), Expect = 1e-05
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL--PEL 268
+ G I + EF + ++ ++ L F K+D D G +S + +SL ++
Sbjct: 84 INDRGNITYTEFMAG-----CYRWKNIESTFLKAAFNKIDKDEDGYISKSDIVSLVHDKV 138
Query: 269 QQNPLVQRVIDIFDEDRNG--------EVDFKEFIQ 296
N + + G ++ F+EF
Sbjct: 139 LDNNDIDNFFLSVHSIKKGIPREHIINKISFQEFKD 174
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 65.1 bits (159), Expect = 1e-12
Identities = 13/104 (12%), Positives = 32/104 (30%), Gaps = 19/104 (18%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPEL-------------QQNPLVQRVIDIFDEDR 285
+R++ R +++D+ G +S +++ + + RV D
Sbjct: 13 LRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAP 72
Query: 286 NGEVDFKEFIQGVSQFSVKGD------RESKLKFAFRIYDIDND 323
+ +E + +K + + D D D
Sbjct: 73 GVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKD 116
Score = 62.8 bits (153), Expect = 1e-11
Identities = 17/150 (11%), Positives = 52/150 (34%), Gaps = 10/150 (6%)
Query: 174 KDLNQLMSMAKEMVEISKNISNKIINR-QGEITEDDSNKDRDGKINFQEFCSIVGN---T 229
+D + ++ ++S + + + +I+ +E +
Sbjct: 34 EDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLG--LAPGVRISVEEAAVNATDSLLK 91
Query: 230 DIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDR 285
++ + + + + +D D G +S+ EF ++ + + D ++
Sbjct: 92 MKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNK 151
Query: 286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAF 315
NG++ EF+ V+ F + + +
Sbjct: 152 NGQISRDEFLVTVNDFLFGLEETALANAFY 181
Score = 47.4 bits (113), Expect = 2e-06
Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 21/131 (16%)
Query: 211 KDRDGKINFQEF-------CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM 263
DG I+ +++ I + + + +L L +S++E
Sbjct: 25 VTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQE--FLRVADQLGLAPGVRISVEEAA 82
Query: 264 SL-----------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK 312
+ + D D D++G V EF + + K
Sbjct: 83 VNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDD-KAI 141
Query: 313 FAFRIYDIDND 323
F D + +
Sbjct: 142 TCFNTLDFNKN 152
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 64.2 bits (157), Expect = 3e-12
Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLP 266
++ +NF EF + I FR D DNSG + +E
Sbjct: 55 RENKAGVNFSEFTG----------VWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFG 104
Query: 267 ELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ +I FD G++ F +FIQG +L FR YD D D
Sbjct: 105 YRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCI-------VLQRLTDIFRRYDTDQD 154
Score = 55.7 bits (135), Expect = 2e-09
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL----VQRVIDIFDEDRNGEVDFK 292
D L F+++D D SG +S E L P V+ +I +FD + V+F
Sbjct: 5 DQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
Query: 293 EFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
EF + + FR YD DN
Sbjct: 65 EFTGVWK-------YITDWQNVFRTYDRDNS 88
Score = 43.0 bits (102), Expect = 4e-05
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
KDR G I+ E + N V +R + D +N ++ EF + +
Sbjct: 18 KDRSGVISDTELQQALSNGTWTPFNPVTVRSI---ISMFDRENKAGVNFSEFTGVWKYIT 74
Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR--ESKLKFAFRIYDIDND 323
+ Q V +D D +G +D E Q +S F G R + R +D
Sbjct: 75 D--WQNVFRTYDRDNSGMIDKNELKQALSGF---GYRLSDQFHDILIRKFDRQGR 124
Score = 38.0 bits (89), Expect = 0.002
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 12/57 (21%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
+ G+I F +F + + ++RL FR+ D D G +S ++++S+
Sbjct: 121 RQGRGQIAFDDF----------IQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSM 167
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 62.5 bits (153), Expect = 4e-12
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F+++D++ GA+S +E + + + + +Q + D D NGE+D EF +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSI 65
Query: 302 SV--KGDRESKLKFAFRIYDIDND 323
D + LK +++ D+D D
Sbjct: 66 QGQDLSDDKIGLKVLYKLMDVDGD 89
Score = 52.1 bits (126), Expect = 2e-08
Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
D +G+I+ EF G+ + + D L ++ +D+D G L+ +E S +
Sbjct: 47 ADGNGEIDQNEFAKFYGSI-QGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG 105
Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQ 296
V + D + +G + +EF++
Sbjct: 106 IEKVAEQVMKADANGDGYITLEEFLE 131
Score = 29.4 bits (67), Expect = 1.2
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
+ + D+N D G I +EF
Sbjct: 113 VMKADANGD--GYITLEEFLEF 132
Score = 27.9 bits (63), Expect = 4.0
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 8/55 (14%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D DGK+ +E S I + K D + G ++++EF+
Sbjct: 86 VDGDGKLTKEEVTSFFKKHGIE-----KVAEQ---VMKADANGDGYITLEEFLEF 132
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 63.3 bits (154), Expect = 8e-12
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 23/108 (21%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL-------------VQRVIDIFDEDR 285
+ RL KRF DLD+ G + +DE + P+ + + V+ +
Sbjct: 35 LSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEP 94
Query: 286 NGEVDFKEFIQGVSQFSVKGDRESK----------LKFAFRIYDIDND 323
+ +++++ F+ + + + D D D
Sbjct: 95 VNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGD 142
Score = 54.1 bits (130), Expect = 1e-08
Identities = 13/139 (9%), Positives = 42/139 (30%), Gaps = 12/139 (8%)
Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINR-QGEITEDDSNKDRDGKINFQEFCSIVGNTDI 231
++ +++V + K+ + + + + +++
Sbjct: 55 MDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKG--VEPVNGLLREDWVEANRVFAE 112
Query: 232 HKKMVVDIRRLGKR-------FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFD 282
++ + LD D G + +DE + + + D
Sbjct: 113 AERERERRGEPSLIALLSNSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKAD 172
Query: 283 EDRNGEVDFKEFIQGVSQF 301
D++G+++ E + +F
Sbjct: 173 TDKSGKLERTELVHLFRKF 191
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 61.8 bits (151), Expect = 2e-11
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
+I L F LD+DNSG LS E + L ++ + + +V+ D + +G++ + +
Sbjct: 55 EINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYTD 114
Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
F+ ++ F+ +DID +
Sbjct: 115 FLAATIDKQ-TYLKKEVCLIPFKFFDIDGN 143
Score = 55.7 bits (135), Expect = 3e-09
Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---MSLPE 267
+ G+I++ +F + I K+ + F+ D+D +G +S++E +
Sbjct: 104 SNASGQIHYTDFLAAT----IDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDD 159
Query: 268 LQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
++ + + ++ D + +GE+DF EF+
Sbjct: 160 IENPLIDKAIDSLLQEVDLNGDGEIDFHEFML 191
Score = 30.3 bits (69), Expect = 0.98
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
+ E D N D G+I+F EF +
Sbjct: 173 LQEVDLNGD--GEIDFHEFMLM 192
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMV-VDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D +GKI+ +E I G DI ++ I L +++DL+ G + EFM +
Sbjct: 140 IDGNGKISVEELKRIFGRDDIENPLIDKAIDSL---LQEVDLNGDGEIDFHEFMLM 192
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 61.0 bits (149), Expect = 4e-11
Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDE--- 261
++ + D +G I+F EF ++ + +KM + + FR D D +G +S E
Sbjct: 54 NEVDADGNGTIDFPEFLTM-----MARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRH 108
Query: 262 -FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK---LKFAFRI 317
+L E + V +I D D +G+V+++EF+Q ++ G ++ ++ R
Sbjct: 109 VMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRA 168
Query: 318 YDIDND 323
Sbjct: 169 IGKMAR 174
Score = 57.5 bits (140), Expect = 5e-10
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D D G ++ E + L QNP +Q +I+ D D NG +DF EF+ +++
Sbjct: 17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
D E +++ AFR++D D +
Sbjct: 77 MKDTDSEEEIREAFRVFDKDGN 98
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 61.1 bits (149), Expect = 4e-11
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL--VQRVIDIFDEDRNGEVDFKEF 294
D+ +L F LD D G ++ ++ L + ++D D D +G++D+ EF
Sbjct: 50 DVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGKIDYTEF 109
Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
I K + + AFR++D+DND
Sbjct: 110 IAAALD--RKQLSKKLIYCAFRVFDVDND 136
Score = 49.9 bits (120), Expect = 3e-07
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE----FMSLP 266
D GKI++ EF + + +K + + + FR D+DN G ++ E +
Sbjct: 98 SDGSGKIDYTEFIAAA----LDRKQLSK-KLIYCAFRVFDVDNDGEITTAELAHILYNGN 152
Query: 267 ELQQNPL-----VQRVIDIFDEDRNGEVDFKEFIQ 296
+ V+R+I D++ +G++DF EF +
Sbjct: 153 KKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSE 187
Score = 30.7 bits (70), Expect = 0.67
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 165 TSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCS 224
T++ + + + N+ ++ + V K + I + D N D GKI+F EF
Sbjct: 140 TTAELAHILYNGNKKGNITQRDVNRVKRM----------IRDVDKNND--GKIDFHEFSE 187
Query: 225 I 225
+
Sbjct: 188 M 188
Score = 28.8 bits (65), Expect = 3.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMV-VDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D DG+I E I+ N + + D+ R+ + R +D +N G + EF +
Sbjct: 133 VDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFHEFSEM 188
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 63.2 bits (154), Expect = 6e-11
Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS------------LPELQQNPLVQRVIDIFDEDR 285
+ + L FR +D + G L E + Q V ++ D DR
Sbjct: 344 ETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDR 403
Query: 286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNE 333
NG +D+ EF+ + KL+ AF+ +D D + D+ G +
Sbjct: 404 NGYIDYSEFVTVAMDRK-SLLSKDKLESAFQKFDQDGNGKISVDELASVFGLD 455
Score = 58.6 bits (142), Expect = 2e-09
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
++ DR+G I++ EF ++ + +K ++ +L F+K D D +G +S+DE S+
Sbjct: 397 GAADFDRNGYIDYSEFVTVA----MDRKSLLSKDKLESAFQKFDQDGNGKISVDELASVF 452
Query: 267 ELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQ 296
L + +I D + +G+VDF+EF +
Sbjct: 453 GLDHLESKTWKEMISGIDSNNDGDVDFEEFCK 484
Score = 46.6 bits (111), Expect = 1e-05
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 11/122 (9%)
Query: 210 NKDRDGKINFQEFCS----IVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF--- 262
+K+ DG+++ QE + G + + D D +G + EF
Sbjct: 356 DKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDYSEFVTV 415
Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDID 321
M L ++ FD+D NG++ E F + K D +
Sbjct: 416 AMDRKSLLSKDKLESAFQKFDQDGNGKISVDELAS---VFGLDHLESKTWKEMISGIDSN 472
Query: 322 ND 323
ND
Sbjct: 473 ND 474
Score = 34.3 bits (79), Expect = 0.075
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+D +GKI+ E S+ G + K ++ +D +N G + +EF +
Sbjct: 437 QDGNGKISVDELASVFGLDHLESKTWKEM------ISGIDSNNDGDVDFEEFCKM 485
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
I+ DSN D G ++F+EFC +
Sbjct: 466 ISGIDSNND--GDVDFEEFCKM 485
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 61.1 bits (148), Expect = 7e-11
Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 163 KETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEF 222
K + + ++ +L + +I+K +K ++ + G +F EF
Sbjct: 64 KLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKL-------ENKGSEDFVEF 116
Query: 223 CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL----VQRV 277
+ + D L F ++D + + +EF +P+L+ +
Sbjct: 117 LEFR----LMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAAL 172
Query: 278 IDIFDEDRNGEVDFKEFIQ 296
D++ G V F EF
Sbjct: 173 FKELDKNGTGSVTFDEFAA 191
Score = 56.8 bits (137), Expect = 2e-09
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 15/100 (15%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS--LPELQQNPLVQRVIDIF------------DE 283
+R + F+K D + +G L DE S L L+ + RV DI
Sbjct: 46 AKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKL 105
Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ G DF EF++ +L F D +
Sbjct: 106 ENKGSEDFVEFLE-FRLMLCYIYDFFELTVMFDEIDASGN 144
Score = 48.4 bits (115), Expect = 1e-06
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR------FRKLDLDNSGALSIDEFMS 264
K+ GK+ + E S + +R + KR L+N G+ EF+
Sbjct: 59 KNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFVEFLE 118
Query: 265 LPELQQNPLVQRVI----DIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDI 320
+ + D D N VD +EF + V + G + F+ D
Sbjct: 119 FRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDK 178
Query: 321 DND 323
+
Sbjct: 179 NGT 181
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 63.0 bits (153), Expect = 8e-11
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 201 QGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD----IRRLGKRFRKLDLDNSGA 256
+ E + + G I+F+E +I+G+ + I + F D D G
Sbjct: 270 KFEGDTLVNRIELKG-IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGT 328
Query: 257 LSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLK 312
++ E + L QNP +Q +I+ D D NG +DF EF+ +++ D E +++
Sbjct: 329 ITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIR 388
Query: 313 FAFRIYDIDND 323
AFR++D D +
Sbjct: 389 EAFRVFDKDGN 399
Score = 50.3 bits (120), Expect = 8e-07
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMV-----VDIRRLGKRFRKLDLDNSGALS 258
I E D D +G I+F EF ++ + +KM +IR FR D D +G +S
Sbjct: 354 INEVD--ADGNGTIDFPEFLTM-----MARKMKDTDSEEEIREA---FRVFDKDGNGYIS 403
Query: 259 IDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
E +L E + V +I D D +G+V+++EF+Q
Sbjct: 404 AAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 445
Score = 31.0 bits (70), Expect = 0.96
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 18/87 (20%)
Query: 244 KRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV 303
+ D+ E++ + + +DFKE +
Sbjct: 251 QERTIFFKDDGN--YKTR----AEVKF-----EGDTLVNRIELKGIDFKEDGNILGHKLE 299
Query: 304 KG-------DRESKLKFAFRIYDIDND 323
++ ++ K AF ++D D D
Sbjct: 300 YNTRDQLTEEQIAEFKEAFSLFDKDGD 326
Score = 30.6 bits (69), Expect = 1.1
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 182 MAKEMVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSIV 226
A E+ + N+ K+ + E+ E +++ D DG++N++EF ++
Sbjct: 403 SAAELRHVMTNLGEKLTDE--EVDEMIREADIDGDGQVNYEEFVQMM 447
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 59.5 bits (145), Expect = 8e-11
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
+I L + F +D D SG ++ +E L + N + ++ D D +G +D+KE
Sbjct: 25 EIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYKE 84
Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
FI + K +RE L AF +D D
Sbjct: 85 FIA-ATLHLNKIEREDHLFAAFTYFDKDGS 113
Score = 50.2 bits (121), Expect = 1e-07
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
D G I+++EF + +H + L F D D SG ++ DE
Sbjct: 74 VDNSGTIDYKEFIAAT----LHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG 129
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ +++ ++ D+D +G +D+ EF+
Sbjct: 130 VEDVRIEE------LMRDVDQDNDGRIDYNEFVA 157
Score = 29.8 bits (68), Expect = 1.3
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
KD G I E + + ++ R +D DN G + +EF+++
Sbjct: 110 KDGSGYITPDELQQACEEFGVEDVRIEEL------MRDVDQDNDGRIDYNEFVAM 158
Score = 29.4 bits (67), Expect = 1.7
Identities = 7/22 (31%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
+ + D +D DG+I++ EF ++
Sbjct: 139 MRDVD--QDNDGRIDYNEFVAM 158
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 62.8 bits (153), Expect = 9e-11
Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 18/115 (15%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQN-----------PLVQRVIDIFDEDR 285
+ + L F+KLD + G L E + L+ V ++ D D+
Sbjct: 353 ERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDK 412
Query: 286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNELI 335
NG +++ EFI E +L+ AF ++D D ++ G I
Sbjct: 413 NGYIEYSEFISVCMDKQ-ILFSEERLRRAFNLFDTDKSGKITKEELANLFGLTSI 466
Score = 58.6 bits (142), Expect = 2e-09
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
+ + D++G I + EF S+ + K+++ RL + F D D SG ++ +E +L
Sbjct: 406 KEVDFDKNGYIEYSEFISVC----MDKQILFSEERLRRAFNLFDTDKSGKITKEELANLF 461
Query: 267 ELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQ 296
L V+ D++++ +DF EF+
Sbjct: 462 GLTSISEKTWNDVLGEADQNKDNMIDFDEFVS 493
Score = 35.4 bits (82), Expect = 0.035
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D+ GKI +E ++ G T I +K D+ + D + + DEF+S+
Sbjct: 446 TDKSGKITKEELANLFGLTSISEKTWNDV------LGEADQNKDNMIDFDEFVSM 494
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
+ E D NKD I+F EF S+
Sbjct: 475 LGEADQNKD--NMIDFDEFVSM 494
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 59.3 bits (144), Expect = 1e-10
Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQN-----PLVQRVIDIF---------DE 283
++++ F ++D D GA++ +F S+ E + + ++D
Sbjct: 5 VQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAV 64
Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESK----LKFAFRIYDIDND 323
+D FI + + + +S L FR D + D
Sbjct: 65 AGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNED 108
Score = 57.0 bits (138), Expect = 6e-10
Identities = 21/147 (14%), Positives = 51/147 (34%), Gaps = 5/147 (3%)
Query: 173 FKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSN-KDRDGKINFQEFCSIVGNTDI 231
D + + E+ + +++ + ++ I+ F + +
Sbjct: 25 RMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVK 84
Query: 232 HKKMVVDIRRLGKR-FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDRNGE 288
+ + + FR +D + +S DE+ L + + D D + +G
Sbjct: 85 NPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGL 144
Query: 289 VDFKEFIQGVSQFSVKGDRESKLKFAF 315
+ +EF+ S F + D +S K +
Sbjct: 145 LSLEEFVIAGSDFFM-NDGDSTNKVFW 170
Score = 51.6 bits (124), Expect = 5e-08
Identities = 17/129 (13%), Positives = 37/129 (28%), Gaps = 19/129 (14%)
Query: 211 KDRDGKINFQEF-------CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFM 263
D+DG I +F H K+++D + + F+
Sbjct: 17 FDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFI 76
Query: 264 SL---------PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFA 314
+ + + D + + + E+ F + G ++ +
Sbjct: 77 NSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIF---FGMLGLDKTMAPAS 133
Query: 315 FRIYDIDND 323
F D +ND
Sbjct: 134 FDAIDTNND 142
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 59.2 bits (144), Expect = 2e-10
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEF 294
I L + F+ +D DNSG ++ DE L + + ++ ++D D D++G +D+ EF
Sbjct: 9 IGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEF 68
Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
I + K +RE L AF +D D
Sbjct: 69 IAATVHLN-KLEREENLVSAFSYFDKDGS 96
Score = 54.5 bits (132), Expect = 6e-09
Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 27/135 (20%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF- 262
+ D D+ G I++ EF + +H + L F D D SG +++DE
Sbjct: 52 MDAAD--IDKSGTIDYGEFIAAT----VHLNKLEREENLVSAFSYFDKDGSGYITLDEIQ 105
Query: 263 -------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ------GVSQFSVKGDRES 309
+ + +I D+D +G++D+ EF G + R++
Sbjct: 106 QACKDFGLDDIHIDD------MIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKT 159
Query: 310 -KLKFAFRIYDIDND 323
L+ A + D ++
Sbjct: 160 LNLRDALGLVDNGSN 174
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI----VGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSI 259
I E D +D DG+I++ EF ++ GN I ++ + L +D ++ +
Sbjct: 122 IKEID--QDNDGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEG 179
Query: 260 DEF 262
Sbjct: 180 YFK 182
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 61.6 bits (150), Expect = 2e-10
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS---------------LPELQQNPLVQRVIDIFD 282
+ + L F K+D + G L E + L V +V+D D
Sbjct: 333 ETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVD 392
Query: 283 EDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNELI 335
D+NG +++ EF+ +L+ AFR++D DN + G +
Sbjct: 393 FDKNGYIEYSEFVTVAMDRK-TLLSRERLERAFRMFDSDNSGKISSTELATIFGVSDV 449
Score = 58.2 bits (141), Expect = 2e-09
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
D + D++G I + EF ++ + +K ++ RL + FR D DNSG +S E ++
Sbjct: 389 DAVDFDKNGYIEYSEFVTVA----MDRKTLLSRERLERAFRMFDSDNSGKISSTELATIF 444
Query: 267 ELQQNP--LVQRVIDIFDEDRNGEVDFKEFIQ 296
+ + V+ D++ +GEVDF EF Q
Sbjct: 445 GVSDVDSETWKSVLSEVDKNNDGEVDFDEFQQ 476
Score = 45.8 bits (109), Expect = 2e-05
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 14/125 (11%)
Query: 210 NKDRDGKINFQEF-------CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
+K+ DG+++ E + G + + +D D +G + EF
Sbjct: 345 DKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEYSEF 404
Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIY 318
M L ++R +FD D +G++ E F V K
Sbjct: 405 VTVAMDRKTLLSRERLERAFRMFDSDNSGKISSTELAT---IFGVSDVDSETWKSVLSEV 461
Query: 319 DIDND 323
D +ND
Sbjct: 462 DKNND 466
Score = 33.5 bits (77), Expect = 0.13
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D GKI+ E +I G +D+ + + ++D +N G + DEF +
Sbjct: 429 SDNSGKISSTELATIFGVSDVDSETWKSV------LSEVDKNNDGEVDFDEFQQM 477
Score = 28.9 bits (65), Expect = 4.2
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 207 DDSNKDRDGKINFQEFCSI 225
+ +K+ DG+++F EF +
Sbjct: 459 SEVDKNNDGEVDFDEFQQM 477
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 58.6 bits (142), Expect = 2e-10
Identities = 21/111 (18%), Positives = 35/111 (31%), Gaps = 26/111 (23%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSL--------------PELQQ-----NPLVQRVID 279
RL KRF + D D +GAL +F E+Q L +
Sbjct: 6 SDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAK 65
Query: 280 IFDEDRNGEVDFKEFIQGVSQFSVKGDRESK-------LKFAFRIYDIDND 323
+G + ++FI+ + S +K + D + D
Sbjct: 66 EAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNAD 116
Score = 54.8 bits (132), Expect = 5e-09
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 211 KDRDGKINFQEFCSIVGN----TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-L 265
DG + ++F + N V + D + G ++ DEF + L
Sbjct: 69 VGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWL 128
Query: 266 PELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
L + + D + NGE+ E + V F
Sbjct: 129 TALGMSKAEAAEAFNQVDTNGNGELSLDELLTAVRDF 165
Score = 27.4 bits (61), Expect = 6.7
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 307 RESKLKFAFRIYDIDND-----DDYYQALGNELIAALIEPLTSA 345
+LK F +D D + D+ + + + A + +A
Sbjct: 5 ASDRLKKRFDRWDFDGNGALERADFEKEAQH-IAEAFGKDAGAA 47
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 58.1 bits (141), Expect = 4e-10
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS------------LPELQQNPL---VQRVIDIFD 282
+ + L + FR+LD + G L E + + +L + + V ++ D
Sbjct: 38 ETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVD 97
Query: 283 EDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
DRNG +++ EF+ +L AF+ +D D
Sbjct: 98 FDRNGYIEYSEFVTVCMDKQ-LLLSRERLLAAFQQFDSDGS 137
Score = 55.0 bits (133), Expect = 5e-09
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---MSLPE 267
DR+G I + EF ++ + K++++ RL F++ D D SG ++ +E + E
Sbjct: 98 FDRNGYIEYSEFVTVC----MDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTE 153
Query: 268 LQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ +V+ D++ +GEVDF+EF++
Sbjct: 154 VDDE-TWHQVLQECDKNNDGEVDFEEFVE 181
Score = 32.6 bits (75), Expect = 0.16
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D GKI +E + G T++ + + ++ D +N G + +EF+ +
Sbjct: 134 SDGSGKITNEELGRLFGVTEVDDETWHQV------LQECDKNNDGEVDFEEFVEM 182
Score = 28.8 bits (65), Expect = 2.8
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
+ E D N D G+++F+EF +
Sbjct: 163 LQECDKNND--GEVDFEEFVEM 182
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 57.9 bits (140), Expect = 5e-10
Identities = 14/137 (10%), Positives = 40/137 (29%), Gaps = 9/137 (6%)
Query: 172 AFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDI 231
A K + L S + + ++ + + G D ++ D ++ +E+ +
Sbjct: 38 AIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYAD--ENEDEQVTKEEWLKMWAECVK 95
Query: 232 HKKMVVDIRRLGKR-----FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDED 284
+ + + F D + E+ + D +
Sbjct: 96 SVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDG 155
Query: 285 RNGEVDFKEFIQGVSQF 301
V + F + +++
Sbjct: 156 GKTMVTREIFARLWTEY 172
Score = 53.3 bits (128), Expect = 2e-08
Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 28/113 (24%)
Query: 239 IRRLGKRFRKL-DLDNSGALSIDEFMSLPE--------LQQNPLVQRVIDIF-------- 281
++ + F D ++ G + D+F +
Sbjct: 11 RNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLR 70
Query: 282 ---DEDRNGEVDFKEFIQGVSQFSVKGDRESK--------LKFAFRIYDIDND 323
DE+ + +V +E+++ ++ ++ + F F + D D
Sbjct: 71 KYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGD 123
Score = 27.5 bits (61), Expect = 6.7
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 264 SLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
L + Q+N +++ +D + +G +++ +F
Sbjct: 5 QLSDFQRNKILRVFNTFYDCNHDGVIEWDDF 35
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 56.7 bits (138), Expect = 6e-10
Identities = 18/82 (21%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D D +G + + E +++ L P ++++I D++ G+++F +F+ ++Q
Sbjct: 12 FDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQK 71
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
+ D + ++ AF+++D D
Sbjct: 72 MSEKDTKEEILKAFKLFDDDET 93
Score = 47.5 bits (114), Expect = 9e-07
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 11/96 (11%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDEF-- 262
+ +K+ GK+NF +F ++ + +KM + + K F+ D D +G +S
Sbjct: 49 SEIDKEGTGKMNFGDFLTV-----MTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKR 103
Query: 263 --MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
L E + +Q +ID D D +GEV +EF++
Sbjct: 104 VAKELGENLTDEELQEMIDEADRDGDGEVSEQEFLR 139
Score = 29.4 bits (67), Expect = 1.3
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 158 IVEKQKETSS--NINNAF----KDLNQLMSMAKEMVEISKNISNKIINRQGEITE--DDS 209
+ +K E + I AF D +S K + ++K + + + E+ E D++
Sbjct: 68 MTQKMSEKDTKEEILKAFKLFDDDETGKIS-FKNLKRVAKELGENLTDE--ELQEMIDEA 124
Query: 210 NKDRDGKINFQEFCSIV 226
++D DG+++ QEF I+
Sbjct: 125 DRDGDGEVSEQEFLRIM 141
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 58.3 bits (141), Expect = 6e-10
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP---LVQRVIDIFDEDRNGEVDFKE 293
R+ + F +D D SG L I+E M R++ IFD D NG + F E
Sbjct: 49 QYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYE 108
Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
F+ F +
Sbjct: 109 FMAMYK-------FMELAYNLFVMNARARS 131
Score = 56.3 bits (136), Expect = 3e-09
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 20/118 (16%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPEL- 268
D +G I+F EF M + F SG L E +L +L
Sbjct: 98 TDFNGHISFYEF----------MAMYKFMELAYNLFVMNARARSGTLEPHEILPALQQLG 147
Query: 269 -QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD 325
N ++ D +I + R A+++ ++
Sbjct: 148 FYINQRTSLLLHRLFARGMAFCDLNCWIAICAF--AAQTRS-----AYQMIFMNPYYG 198
Score = 47.9 bits (114), Expect = 2e-06
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 18/97 (18%)
Query: 211 KDRDGKINFQEFCSIVGNTDIH------KKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS 264
+DR G + E I +M+ R D D +G +S EFM+
Sbjct: 62 RDRSGTLEINELMMGQFPGGIRLSPQTALRMM----------RIFDTDFNGHISFYEFMA 111
Query: 265 LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
+ + + + + R+G ++ E + + Q
Sbjct: 112 MYKFMEL--AYNLFVMNARARSGTLEPHEILPALQQL 146
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 56.7 bits (138), Expect = 6e-10
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D DNSG++S E + + L +P V +++ D D N ++F EF+ +S+
Sbjct: 17 FALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQ 76
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
D E +L AF+++D + D
Sbjct: 77 LKCNDSEQELLEAFKVFDKNGD 98
Score = 42.8 bits (102), Expect = 4e-05
Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
++ + D + I F EF +++ ++ F+ D + G +S E
Sbjct: 54 NEIDVDGNHAIEFSEFLALMSRQLKCNDSEQELLEA---FKVFDKNGDGLISAAELKHVL 110
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
S+ E + V ++ D +GE++ K+F
Sbjct: 111 TSIGEKLTDAEVDEMLREVS-DGSGEINIKQFAA 143
Score = 27.8 bits (63), Expect = 3.9
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIV 226
+ E D G+IN ++F +++
Sbjct: 126 LREVS---DGSGEINIKQFAALL 145
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 56.4 bits (137), Expect = 9e-10
Identities = 18/82 (21%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D++N G L E +++ L + +ID +D + + + +F + +
Sbjct: 29 FSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEK 88
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
+K D ++K AF+++D D+
Sbjct: 89 ILKRDPLDEIKRAFQLFDDDHT 110
Score = 47.9 bits (115), Expect = 9e-07
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
D+ + + + + +F ++G + + + +I+R F+ D D++G +SI
Sbjct: 66 DEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEIKRA---FQLFDDDHTGKISIKNLRRVA 122
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
L E + ++ +I+ FD D +GE++ EFI
Sbjct: 123 KELGETLTDEELRAMIEEFDLDGDGEINENEFIA 156
Score = 28.7 bits (65), Expect = 2.8
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIVGNT 229
E+ ++ + D DG+IN EF +I ++
Sbjct: 133 ELRAMIEEFDLDGDGEINENEFIAICTDS 161
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 56.4 bits (137), Expect = 9e-10
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D D SG + E +++ L P ++++I D+D +G +DF+EF+ ++
Sbjct: 34 FDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAK 93
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
+ D ++ AFR++D DN
Sbjct: 94 MGERDSREEILKAFRLFDDDNS 115
Score = 47.6 bits (114), Expect = 1e-06
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDEF-- 262
+ +KD G I+F+EF +++ KM R + K FR D DNSG ++I +
Sbjct: 71 SEIDKDGSGTIDFEEFLTMMT-----AKMGERDSREEILKAFRLFDDDNSGTITIKDLRR 125
Query: 263 --MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
L E +Q +I D + + E+D EFI+
Sbjct: 126 VAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIR 161
Score = 29.1 bits (66), Expect = 1.8
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIV 226
E+ E +++++ D +I+ EF I+
Sbjct: 138 ELQEMIAEADRNDDNEIDEDEFIRIM 163
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 59.7 bits (145), Expect = 1e-09
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 24/128 (18%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF------------------MSLPELQQNPLVQRVID 279
+ ++L + FRKLD +N G L DE + + ++
Sbjct: 329 ETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMP 388
Query: 280 IFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND-----DDYYQALGNEL 334
+ D D +G +++ EFI + +++ AF+++D D + ++
Sbjct: 389 LLDMDGSGSIEYSEFIASAIDRT-ILLSRERMERAFKMFDKDGSGKISTKELFKLFSQAD 447
Query: 335 IAALIEPL 342
+ +E L
Sbjct: 448 SSIQMEEL 455
Score = 57.0 bits (138), Expect = 7e-09
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLP 266
+ D G I + EF + I + +++ R+ + F+ D D SG +S E L
Sbjct: 388 PLLDMDGSGSIEYSEFIASA----IDRTILLSRERMERAFKMFDKDGSGKISTKELFKLF 443
Query: 267 ELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
+ + ++ +I+ D +++GEVDF EF++
Sbjct: 444 SQADSSIQMEELESIIEQVDNNKDGEVDFNEFVE 477
Score = 31.2 bits (71), Expect = 0.84
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
KD GKI+ +E + D + + L ++D + G + +EF+ +
Sbjct: 428 KDGSGKISTKELFKLFSQAD----SSIQMEELESIIEQVDNNKDGEVDFNEFVEM 478
Score = 30.4 bits (69), Expect = 1.3
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 158 IVEKQKETSSNINNAFKDLNQLMS-------MAKEMVEISKNISNKIINRQGEITEDDSN 210
I + + AFK ++ S + K + +I + + I + D+N
Sbjct: 408 IDRTILLSRERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELES--IIEQVDNN 465
Query: 211 KDRDGKINFQEFCSI 225
KD G+++F EF +
Sbjct: 466 KD--GEVDFNEFVEM 478
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 56.9 bits (137), Expect = 1e-09
Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 7/113 (6%)
Query: 196 KIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR-----FRKLD 250
+ + + ++ ++D ++++E+ ++ T K V D+ + F+ +D
Sbjct: 56 ASLEDEWRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMD 115
Query: 251 LDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
+ G + ++EF + Q V V ++ + D + + +
Sbjct: 116 VSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKELYYRL 168
Score = 48.4 bits (115), Expect = 8e-07
Identities = 12/113 (10%), Positives = 38/113 (33%), Gaps = 28/113 (24%)
Query: 239 IRRLGKRFRK-LDLDNSGALSIDEFMSLPE--------LQQNPLVQRVIDIF-------- 281
+++ F LD+++ G++ ++F + + + +
Sbjct: 7 KQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLK 66
Query: 282 ---DEDRNGEVDFKEFIQGVSQFSVKGDRESK--------LKFAFRIYDIDND 323
D +++ V ++E++ + + + F F+ D+ D
Sbjct: 67 GRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGD 119
Score = 27.2 bits (60), Expect = 8.9
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 265 LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV 303
L + Q+ + D + +G + +F ++++
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKE 40
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 55.9 bits (135), Expect = 1e-09
Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 25/109 (22%)
Query: 240 RRLGKRFRKLDLDNSGALSIDEFMSL--------------PELQQ-----NPLVQRVIDI 280
RR+ RF D D +G + +F Q L Q + I
Sbjct: 4 RRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGI 63
Query: 281 FDEDRNGEVDFKEFIQGVSQFSVKGDRESK------LKFAFRIYDIDND 323
D D + + +EF+ G + L A + D D D
Sbjct: 64 ADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGD 112
Score = 54.7 bits (132), Expect = 4e-09
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 5/96 (5%)
Query: 211 KDRDGKINFQEFCSIVGN---TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMS-LP 266
+D D +I +EF + + + L D D GA+++ + L
Sbjct: 66 RDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADTARALT 125
Query: 267 ELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
L ++ D D +G+V E + +++
Sbjct: 126 AFGVPEDLARQAAAALDTDGDGKVGETEIVPAFARY 161
Score = 27.8 bits (62), Expect = 5.7
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 306 DRESKLKFAFRIYDIDND 323
+ E ++ F +D D +
Sbjct: 1 EYERRIAARFTTFDQDGN 18
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 55.2 bits (134), Expect = 2e-09
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D + +G ++ + + L + + + D NG++ F EF+ + +
Sbjct: 12 FELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRR 71
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
+ E L+ AFR +D +
Sbjct: 72 MKQTTSEDILRQAFRTFDPEGT 93
Score = 44.0 bits (105), Expect = 1e-05
Identities = 19/99 (19%), Positives = 43/99 (43%), Gaps = 18/99 (18%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDE 261
++++ +GKI F EF S++G ++M +R+ FR D + +G +
Sbjct: 49 NEADATGNGKIQFPEFLSMMG-----RRMKQTTSEDILRQA---FRTFDPEGTGYIPKAA 100
Query: 262 F----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
++L + + + I + + G++ + FI
Sbjct: 101 LQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYDNFIN 138
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 54.0 bits (131), Expect = 5e-09
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D D G ++ E + L QNP +Q +I+ D D NG +DF EF+ +++
Sbjct: 16 FALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARK 75
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
+ D E +L AF+++D D +
Sbjct: 76 MKEQDSEEELIEAFKVFDRDGN 97
Score = 48.3 bits (116), Expect = 5e-07
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 17/99 (17%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDE 261
++ + D +G I+F EF S+ + +KM ++ F+ D D +G +S E
Sbjct: 53 NEVDADGNGTIDFPEFLSL-----MARKMKEQDSEEELIEA---FKVFDRDGNGLISAAE 104
Query: 262 F----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+L E + V +I D D +G ++++EF++
Sbjct: 105 LRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVR 143
Score = 29.0 bits (66), Expect = 2.1
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 182 MAKEMVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSIV 226
A E+ + N+ K+ + E+ E +++ D DG IN++EF ++
Sbjct: 101 SAAELRHVMTNLGEKLTDD--EVDEMIREADIDGDGHINYEEFVRMM 145
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 54.8 bits (132), Expect = 6e-09
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 24/109 (22%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNPL---VQRVIDIFDEDRNG-- 287
I R F LD++++G +S+DE + + L P + G
Sbjct: 15 IGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMK 74
Query: 288 ---EVDFKEFIQGVSQFSV----------KGDRESKLKFAFRIYDIDND 323
E D+ +I+G + + F I D D +
Sbjct: 75 YGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQN 123
Score = 53.7 bits (129), Expect = 1e-08
Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVG-------NTDIHKKMVVDIRRLGKRFRKLDLDNSG 255
E + + ++ + + + F +D D +G
Sbjct: 65 EAFFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNG 124
Query: 256 ALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGD 306
A+++DE+ + +Q + + + D D +G++D E + F D
Sbjct: 125 AITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFWYTMD 179
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 54.4 bits (131), Expect = 8e-09
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 31/121 (25%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
+D G + F EF K++ + + F D D SG + E
Sbjct: 84 RDMSGTMGFNEF----------KELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMG 133
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDN 322
L N + +R NG++ F ++I + L +FR D
Sbjct: 134 FRLSPQAVNSIAKRY------STNGKITFDDYIACCV-------KLRALTDSFRRRDTAQ 180
Query: 323 D 323
Sbjct: 181 Q 181
Score = 41.3 bits (97), Expect = 2e-04
Identities = 13/89 (14%), Positives = 27/89 (30%), Gaps = 16/89 (17%)
Query: 244 KRFRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDRNGEVDFKEF 294
+ G + DE L + + ++ + D D +G + F EF
Sbjct: 36 YGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEF 95
Query: 295 IQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ + + + F +D D
Sbjct: 96 KELWA-------VLNGWRQHFISFDTDRS 117
Score = 39.7 bits (93), Expect = 6e-04
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
+GKI F ++ + V +R L FR+ D G D+F+
Sbjct: 149 STNGKITFDDYIA----------CCVKLRALTDSFRRRDTAQQGVVNFPYDDFIQC 194
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 52.1 bits (125), Expect = 9e-09
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 231 IHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRN 286
+HK + + + F D + +S +EF ++ + L R+ + +
Sbjct: 15 LHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAK 74
Query: 287 GEVDFKEFIQGVSQFSVKGDRES 309
G + + +F +S+FS +
Sbjct: 75 GRLKYPDF---LSRFSSETAATP 94
Score = 26.7 bits (59), Expect = 6.3
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR 245
+ G++ + +F S + M + +R
Sbjct: 71 VNAKGRLKYPDFLSRFSSETAATPMATGDSAVAQR 105
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 53.3 bits (129), Expect = 1e-08
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
F D D G +S E + L QNP + +I+ DED +G +DF+EF+ + +
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85
Query: 302 ---SVKGDRESKLKFAFRIYDIDND 323
KG E +L FRI+D + D
Sbjct: 86 MKEDAKGKSEEELANCFRIFDKNAD 110
Score = 51.4 bits (124), Expect = 6e-08
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSL 265
++ ++D G I+F+EF ++ L FR D + G + I+E L
Sbjct: 63 EEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEIL 122
Query: 266 PELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
++ ++ ++ D++ +G +DF EF++
Sbjct: 123 RATGEHVTEEDIEDLMKDSDKNNDGRIDFDEFLK 156
Score = 29.5 bits (67), Expect = 1.6
Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIV 226
+I + DS+K+ DG+I+F EF ++
Sbjct: 133 DIEDLMKDSDKNNDGRIDFDEFLKMM 158
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 51.9 bits (125), Expect = 1e-08
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 202 GEITEDDSNK-----DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA 256
G + + D + N++ F + VG T K DI+ K F +D D SG
Sbjct: 5 GILADADVAAALKACEAADSFNYKAFFAKVGLT---AKSADDIK---KAFFVIDQDKSGF 58
Query: 257 LSIDE---FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
+ DE F+ + L + + D D +G + E+
Sbjct: 59 IEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAA 105
Score = 38.4 bits (90), Expect = 6e-04
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ ++K F V +K AF + D D
Sbjct: 20 EAADSFNYKAFFAKVGL---TAKSADDIKKAFFVIDQDKS 56
Score = 30.3 bits (69), Expect = 0.45
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 211 KDRDGKINFQEFCSIV 226
D DG I E+ ++V
Sbjct: 92 SDGDGAIGVDEWAALV 107
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 52.3 bits (126), Expect = 1e-08
Identities = 15/116 (12%), Positives = 43/116 (37%), Gaps = 10/116 (8%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSL 265
++ + +++ ++ ++ V ++ + F L ++ + +
Sbjct: 10 LETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKG---FSLLADPERHLITAESLRRNS 66
Query: 266 PELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQGVSQFS--VKGDRESKLKFAF 315
L + Q ++ D D +G ++ EF + + S + D E+ L+ A
Sbjct: 67 GILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKAL 122
Score = 43.9 bits (104), Expect = 1e-05
Identities = 5/53 (9%), Positives = 18/53 (33%)
Query: 271 NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
P + ++ E +++ + +++ + S+L F +
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPER 54
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 51.5 bits (124), Expect = 2e-08
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 13/101 (12%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
+I Q+F G + K ++ FR +D D SG L DE
Sbjct: 10 DIAAALQECQDPDTFEPQKFFQTSGLS---KMSASQVK---DIFRFIDNDQSGYLDGDEL 63
Query: 262 --FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
F+ + L + ++D D D +G++ EF +
Sbjct: 64 KYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQE 104
Score = 31.1 bits (71), Expect = 0.24
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ ++F Q + S++K FR D D
Sbjct: 19 QDPDTFEPQKFFQTSG---LSKMSASQVKDIFRFIDNDQS 55
Score = 28.4 bits (64), Expect = 2.0
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 211 KDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
D+ G ++ E + +D + + + L D D G + DEF +
Sbjct: 52 NDQSGYLDGDELKYFLQKFQSDARELTESETKSL---MDAADNDGDGKIGADEFQEM 105
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 211 KDRDGKINFQEFCSIV 226
D DGKI EF +V
Sbjct: 91 NDGDGKIGADEFQEMV 106
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 51.5 bits (124), Expect = 2e-08
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE-------FMS 264
+ ++F +VG KK D++ K F LD D SG + DE F S
Sbjct: 19 TAADSFDHKKFFQMVGLK---KKSADDVK---KVFHILDKDKSGFIEEDELGSILKGFSS 72
Query: 265 LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ ++ D+D +G++ +EF
Sbjct: 73 DARDLSAKETKTLMAAGDKDGDGKIGVEEFST 104
Score = 33.0 bits (76), Expect = 0.045
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 264 SLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
S+ +L +++ I F D K+F Q V K +K F I D D
Sbjct: 1 SMTDLLSAEDIKKAIGAFTAA--DSFDHKKFFQMVGL---KKKSADDVKKVFHILDKDKS 55
Score = 28.8 bits (65), Expect = 1.5
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVD--IRRLGKRFRKLDLDNSGALSIDEFMSL 265
KD+ G I E SI+ + + + L D D G + ++EF +L
Sbjct: 52 KDKSGFIEEDELGSILKGFSSDARDLSAKETKTL---MAAGDKDGDGKIGVEEFSTL 105
Score = 28.4 bits (64), Expect = 1.7
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIVGNT 229
E +KD DGKI +EF ++V +
Sbjct: 81 ETKTLMAAGDKDGDGKIGVEEFSTLVAES 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 2e-08
Identities = 78/558 (13%), Positives = 153/558 (27%), Gaps = 170/558 (30%)
Query: 1 MDRFEYCSFELSPDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQKDITL----- 55
+ L D K++ RL + + ++ L L K++ +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRL---QPYLKLRQALLELRPA-----KNVLIDGVLG 160
Query: 56 ----CLALSYIQNAVEEAKSMFN---LTAGRK-----IILYL----SKAVPGKNLGPSAT 99
+AL + + K F L ++ L + P +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 100 SAYDYVKLSFREGIQNEF-----------LDALKSTVDAKIW-----------TVQNKSA 137
S S + ++ L ++ +AK W T + K
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQV 277
Query: 138 QQTKLREIKTRTGIVGIERNIVEKQKET----SSNINNAFKDLNQLMSMAKEMVEIS-KN 192
T T T I ++ E ++ +DL +E++ + +
Sbjct: 278 --TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL------PREVLTTNPRR 329
Query: 193 ISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLD 252
+S II E RDG + + K V+ +L + L+
Sbjct: 330 LS--II---AE-------SIRDGLATWDNW----------KH--VNCDKL-TTIIESSLN 364
Query: 253 NSGALSIDE----FMSLPELQQNPLVQRVIDIFDEDRN----------GEVDFKEFIQGV 298
L E F L +F + +V + + V
Sbjct: 365 V---LEPAEYRKMFDRLS-------------VFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 299 SQFSVKG--DRESKLKFAFRIYDIDND----DDYYQALGNELIAALIEPLTSAGGTMLLT 352
++ +++ K + I I + + AL ++ P T ++
Sbjct: 409 NKLHKYSLVEKQPK-ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 353 --DAY---------CRINRARGLELLSPEDLLNSCLALD------KLPDSPIYLKTYSSG 395
D Y I + L + LD K+ S
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRM-------VFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 396 VKVLQ-LKSCEDASFVEKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRLLLAETHGKLCR 454
+ LQ LK + ++ + V + F +L+ +K+ LL
Sbjct: 521 LNTLQQLKFYKP--YICDNDPKYERLV-NAILDFLPKIEENLICSKYTDLL--------- 568
Query: 455 DQSIEGLRFYENKFLLEE 472
+ L E++ + EE
Sbjct: 569 -RI--AL-MAEDEAIFEE 582
Score = 42.1 bits (98), Expect = 3e-04
Identities = 33/230 (14%), Positives = 69/230 (30%), Gaps = 53/230 (23%)
Query: 275 QRVIDIFDEDRNGEVDFK---EFIQGV-SQFSVK-----GDRESKLKFAFRIYDIDNDDD 325
+ ++ +F++ D K + + + S+ + D S F ++
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 326 YYQALGNELIAA---LIEPL-TSAGGTMLLTDAY--CR--------------INRAR--- 362
+ + L L+ P+ T ++T Y R ++R +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 363 ----GLELLSPEDLL---------NSCLALDKLPDSPIYLKTYSSGVKVLQLKSCEDASF 409
L L P + + +ALD + + L LK+C
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPET 197
Query: 410 V----EKTYEIVSQNVFVTVEQFSRLASVSLVIAKHRL--LLAETHGKLC 453
V +K + N + S + + + + L LL + C
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENC 246
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 52.2 bits (126), Expect = 2e-08
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
FR+ D D G ++ + + + P + + + + G VDF +F++ +
Sbjct: 17 FREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPK 76
Query: 302 SVKGDRESK----LKFAFRIYDIDND 323
+ + L+ AFR +D + D
Sbjct: 77 LLAETADMIGVKELRDAFREFDTNGD 102
Score = 49.5 bits (119), Expect = 2e-07
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 207 DDSNKDRDGKINFQEFCSIVG----NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
N + G ++F +F ++G V ++R FR+ D + G +S E
Sbjct: 54 QQINMNLGGHVDFDDFVELMGPKLLAETADMIGVKELRDA---FREFDTNGDGEISTSEL 110
Query: 263 -MSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
++ L + + ++ +I D + +G VDF+EF++
Sbjct: 111 REAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVR 149
Score = 29.0 bits (66), Expect = 1.8
Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSI 225
+I E D + + DG+++F+EF +
Sbjct: 126 DIEEIIRDVDLNGDGRVDFEEFVRM 150
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 50.6 bits (122), Expect = 3e-08
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
++ + +EF + VG +D + K F +D D SG + DE
Sbjct: 10 DVAAALAACSAADSFKHKEFFAKVG----LASKSLD--DVKKAFYVIDQDKSGFIEEDEL 63
Query: 262 --FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
F+ L + + D+D +G + EF
Sbjct: 64 KLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAA 104
Score = 37.9 bits (89), Expect = 8e-04
Identities = 9/40 (22%), Positives = 11/40 (27%), Gaps = 3/40 (7%)
Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
KEF V +K AF + D D
Sbjct: 19 SAADSFKHKEFFAKVGL---ASKSLDDVKKAFYVIDQDKS 55
Score = 29.5 bits (67), Expect = 0.75
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 211 KDRDGKINFQEFCSIV 226
KD DG I EF +++
Sbjct: 91 KDGDGMIGVDEFAAMI 106
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 52.0 bits (125), Expect = 3e-08
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPEL- 268
D GK+ F+EF K + +I++ +++ D+D SG + E +
Sbjct: 58 SDTTGKLGFEEF----------KYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAG 107
Query: 269 -QQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
N + +I D G +DF FI + R + AF+ D D
Sbjct: 108 FHLNEHLYSMIIRRYSDEGGNMDFDNFISCLV-------RLDAMFRAFKSLDKDGT 156
Score = 39.3 bits (92), Expect = 0.001
Identities = 20/113 (17%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSL--------PELQQNPL----VQRVIDIFDEDR 285
++R+ + F +L + +S E M++ P+L+ + + ++ + D D
Sbjct: 2 EVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDT 60
Query: 286 NGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAAL 338
G++ F+EF + K + ++ +D+D +EL A
Sbjct: 61 TGKLGFEEFKYLW-------NNIKKWQAIYKQFDVDRSG---TIGSSELPGAF 103
Score = 37.0 bits (86), Expect = 0.005
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
D G ++F F S +V + + + F+ LD D +G ++I E++ L
Sbjct: 124 DEGGNMDFDNFIS----------CLVRLDAMFRAFKSLDKDGTGQIQVNIQEWLQL 169
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 50.4 bits (121), Expect = 4e-08
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE---FMSLPEL 268
+ ++F I G + KK ++ + FR LD D SG + DE F+ E
Sbjct: 19 QAPDSFSPKKFFQISGMS---KKSSSQLK---EIFRILDNDQSGFIEEDELKYFLQRFES 72
Query: 269 QQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
L + + D D +G++ +EF +
Sbjct: 73 GARVLTASETKTFLAAADHDGDGKIGAEEFQE 104
Score = 30.7 bits (70), Expect = 0.33
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
K+F Q + S+LK FRI D D
Sbjct: 19 QAPDSFSPKKFFQISG---MSKKSSSQLKEIFRILDNDQS 55
Score = 28.0 bits (63), Expect = 2.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 211 KDRDGKINFQEFCSIV 226
D DGKI +EF +V
Sbjct: 91 HDGDGKIGAEEFQEMV 106
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 51.8 bits (125), Expect = 4e-08
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR-LGKRFRKLDLDNSGALSIDEF-MS 264
D+ + +G I+F F I + +++ L + FR D + +G +S D
Sbjct: 57 DEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREI 116
Query: 265 LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
L EL + + +ID D D +G VDF+EF+
Sbjct: 117 LAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMG 151
Score = 49.9 bits (120), Expect = 2e-07
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 246 FRKLD-LDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
FR + + SG +S D+ + L L ++++ID FD NG++DF F ++
Sbjct: 19 FRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGAR 78
Query: 301 F----SVKGDRESKLKFAFRIYDIDND 323
F + +L+ AFR+YD + +
Sbjct: 79 FLGEEVNPEQMQQELREAFRLYDKEGN 105
Score = 28.7 bits (65), Expect = 2.4
Identities = 7/30 (23%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIVGNTD 230
++ D+ + D G ++F+EF ++ D
Sbjct: 128 DLDAMIDEIDADGSGTVDFEEFMGVMTGGD 157
Score = 27.1 bits (61), Expect = 7.9
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
K+ +G I+ I+ D D+ + ++D D SG + +EFM +
Sbjct: 102 KEGNGYISTDVMREILAELD-ETLSSEDLDAM---IDEIDADGSGTVDFEEFMGV 152
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 48.7 bits (117), Expect = 4e-08
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 246 FRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
F+++D++ GA+S +E + ++ +Q + D D NGE+D EF +
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Score = 45.6 bits (109), Expect = 6e-07
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%)
Query: 273 LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDD--DYYQAL 330
+ + + D + +G V ++E VS+ E L+ F+ D D + D
Sbjct: 1 MAEALFKEIDVNGDGAVSYEEVKAFVSKKR-AIKNEQLLQLIFKSIDADGNGEIDQ---- 55
Query: 331 GNELIAAL 338
NE
Sbjct: 56 -NEFAKFY 62
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+ DG ++++E + V K ++ + F+ +D D +G + +EF
Sbjct: 11 VNGDGAVSYEEVKAFVSKKRAIKNEQ-LLQLI---FKSIDADGNGEIDQNEFAKF 61
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 51.1 bits (123), Expect = 6e-08
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVG----NTDIHKKMVV-DIRRLGKRFRKLDLDNSGAL 257
+I DS+ + + ++ D K D K F+ D +++G +
Sbjct: 44 DIINADSSLRDASSLTLDQITGLIEVNEKELDATTKAKTEDFV---KAFQVFDKESTGKV 100
Query: 258 SIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
S+ + L E + V ++ + D NGE+D+K+FI+
Sbjct: 101 SVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIE 143
Score = 42.6 bits (101), Expect = 4e-05
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 10/88 (11%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVID-IFDEDRNGEVDFKEFIQGVSQ 300
F D GA++ D L + NP VQ +I+ + + +
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEV 69
Query: 301 FSVKGDRESK-----LKFAFRIYDIDND 323
+ D +K AF+++D ++
Sbjct: 70 NEKELDATTKAKTEDFVKAFQVFDKEST 97
Score = 27.6 bits (62), Expect = 5.6
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 182 MAKEMVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSIV 226
++ + + K+ + E+ E D +G+I++++F V
Sbjct: 101 SVGDLRYMLTGLGEKLTDA--EVDELLKGVEVDSNGEIDYKKFIEDV 145
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 49.9 bits (120), Expect = 6e-08
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE---FMSLPEL 268
+G N ++F ++VG K M + + K F+ +D D SG + +E +
Sbjct: 20 KAEGSFNHKKFFALVG----LKAMSAN--DVKKVFKAIDADASGFIEEEELKFVLKSFAA 73
Query: 269 QQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
L + + D+D +G++ EF
Sbjct: 74 DGRDLTDAETKAFLKAADKDGDGKIGIDEFET 105
Score = 38.7 bits (91), Expect = 5e-04
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 277 VIDIFDE-DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ D G + K+F V K + +K F+ D D
Sbjct: 12 IKKALDAVKAEGSFNHKKFFALVGL---KAMSANDVKKVFKAIDADAS 56
Score = 29.1 bits (66), Expect = 0.98
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 211 KDRDGKINFQEFCSIVGNT 229
KD DGKI EF ++V
Sbjct: 92 KDGDGKIGIDEFETLVHEA 110
Score = 26.4 bits (59), Expect = 8.4
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 250 DLDNSGALSIDEFMSLPELQQNPL--VQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDR 307
+ G+ + +F +L L+ V++V D D +G ++ +E + F+ G
Sbjct: 18 AVKAEGSFNHKKFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRD 77
Query: 308 --ESKLKFAFRIYDIDND 323
+++ K + D D D
Sbjct: 78 LTDAETKAFLKAADKDGD 95
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 51.2 bits (123), Expect = 6e-08
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 31/121 (25%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
+D GK+ F F K++ + + F +D D SG + E
Sbjct: 51 RDHTGKMGFNAF----------KELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMG 100
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDN 322
L +V+R +NG + F +++ + L FR D
Sbjct: 101 YRLSPQTLTTIVKRY------SKNGRIFFDDYVACCV-------KLRALTDFFRKRDHLQ 147
Query: 323 D 323
Sbjct: 148 Q 148
Score = 42.0 bits (99), Expect = 9e-05
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDRNGEVDFKEFIQ 296
F + G + +E L + N + +I + D D G++ F F +
Sbjct: 6 FSAVA-GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAFKE 64
Query: 297 GVSQFSVKGDRESKLKFAFRIYDIDND 323
+ K F D D
Sbjct: 65 LW-------AALNAWKENFMTVDQDGS 84
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
++G+I F ++ + V +R L FRK D G+ D+F+
Sbjct: 116 SKNGRIFFDDYVA----------CCVKLRALTDFFRKRDHLQQGSANFIYDDFLQG 161
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 51.7 bits (124), Expect = 7e-08
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 24/109 (22%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNPL---VQRVIDIFDEDRNG-- 287
I+R F LD++ +G +++DE +S +L+ P +V G
Sbjct: 19 IKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGME 78
Query: 288 ---EVDFKEFIQGVSQFSVKGDRES----------KLKFAFRIYDIDND 323
E+ F +F+ G Q + ++ F I+D D
Sbjct: 79 YGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGS 127
Score = 50.9 bits (122), Expect = 1e-07
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 11/118 (9%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGKR-----FRKLDLDNSG 255
E + +I F +F T KK + L + F D D SG
Sbjct: 69 EAFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSG 128
Query: 256 ALSIDEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRES 309
+++DE+ + D D G++D E + F D E+
Sbjct: 129 TITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYTLDPEA 186
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 49.6 bits (119), Expect = 8e-08
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
+I S+ N++ F S VG D ++ K F LD D SG + +E
Sbjct: 11 DIESALSSCQAADSFNYKSFFSTVG----LSSKTPD--QIKKVFGILDQDKSGFIEEEEL 64
Query: 262 --FMSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
F+ L + + D D +G++ +EF
Sbjct: 65 QLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQS 105
Score = 37.6 bits (88), Expect = 0.001
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 284 DRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
++K F V ++K F I D D
Sbjct: 20 QAADSFNYKSFFSTVGL---SSKTPDQIKKVFGILDQDKS 56
Score = 30.3 bits (69), Expect = 0.35
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 211 KDRDGKINFQEFCSIV 226
D DGKI +EF S+V
Sbjct: 92 TDGDGKIGVEEFQSLV 107
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 50.6 bits (122), Expect = 1e-07
Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 207 DDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
D+ ++D G ++F EF ++ + L FR D + G + ++E
Sbjct: 62 DEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIML 121
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ E ++ ++ D++ +G +D+ EF++
Sbjct: 122 QATGETITEDDIEELMKDGDKNNDGRIDYDEFLE 155
Score = 46.8 bits (112), Expect = 2e-06
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 246 FRKLDLD-NSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
F L G++S E + L QNP +Q +ID DED +G VDF EF+ + +
Sbjct: 24 FDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVR 83
Query: 301 FSV---KGDRESKLKFAFRIYDIDND 323
KG E +L FR++D + D
Sbjct: 84 SMKDDSKGKSEEELSDLFRMFDKNAD 109
Score = 29.1 bits (66), Expect = 1.9
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIV 226
+I E D +K+ DG+I++ EF +
Sbjct: 132 DIEELMKDGDKNNDGRIDYDEFLEFM 157
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 48.7 bits (117), Expect = 1e-07
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 20/93 (21%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDEFMS-L 265
G I+ + K M +I L + F+ +D DNSG ++ DE L
Sbjct: 1 HSSGHIDDDD-----------KHMAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGL 49
Query: 266 PELQQNPL---VQRVIDIFDEDRNGEVDFKEFI 295
+ + ++ ++D D D++G +D+ EFI
Sbjct: 50 KRVGSELMESEIKDLMDAADIDKSGTIDYGEFI 82
Score = 25.9 bits (58), Expect = 8.2
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 22/64 (34%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR---------FRKLDLDNSGALSIDE 261
D G I F E ++R+G D+D SG + E
Sbjct: 34 TDNSGTITFDELKDG-------------LKRVGSELMESEIKDLMDAADIDKSGTIDYGE 80
Query: 262 FMSL 265
F++
Sbjct: 81 FIAA 84
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 50.5 bits (121), Expect = 1e-07
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 31/121 (25%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-------- 262
+D G + F EF K++ + + F D D SG + E
Sbjct: 53 RDMSGTMGFNEF----------KELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMG 102
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDN 322
L N + +R +G++ F ++I + L +FR D
Sbjct: 103 FRLNPQTVNSIAKRY------STSGKITFDDYIACCV-------KLRALTDSFRRRDSAQ 149
Query: 323 D 323
Sbjct: 150 Q 150
Score = 39.3 bits (92), Expect = 8e-04
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 17/87 (19%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDRNGEVDFKEFIQ 296
F + G + DE L + + ++ + D D +G + F EF +
Sbjct: 8 FASVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKE 66
Query: 297 GVSQFSVKGDRESKLKFAFRIYDIDND 323
+ + + F +D D
Sbjct: 67 LWA-------VLNGWRQHFISFDSDRS 86
Score = 38.1 bits (89), Expect = 0.002
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
GKI F ++ + V +R L FR+ D G S D+F+
Sbjct: 118 STSGKITFDDYIA----------CCVKLRALTDSFRRRDSAQQGMVNFSYDDFIQC 163
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 49.1 bits (118), Expect = 1e-07
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE- 261
+I + S G +++ F +VG K ++ + F LD D SG + +E
Sbjct: 10 DINKAISAFKDPGTFDYKRFFHLVGLK---GKTDAQVK---EVFEILDKDQSGFIEEEEL 63
Query: 262 --FMSLPELQQNPLVQRVIDIF----DEDRNGEVDFKEFIQ 296
+ L D D +G++ EF +
Sbjct: 64 KGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAK 104
Score = 44.1 bits (105), Expect = 5e-06
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 280 IFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
I G D+K F V KG ++++K F I D D
Sbjct: 15 ISAFKDPGTFDYKRFFHLVGL---KGKTDAQVKEVFEILDKDQS 55
Score = 29.5 bits (67), Expect = 0.82
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 211 KDRDGKINFQEFCSIV 226
D DGKI EF +V
Sbjct: 91 SDHDGKIGADEFAKMV 106
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 49.8 bits (120), Expect = 1e-07
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 211 KDRDGKINFQEFCSIVG----NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
+ G INF F ++ G TD IR F D + SG + D
Sbjct: 50 SEAPGPINFTMFLTMFGEKLNGTDPED----VIRNA---FACFDEEASGFIHEDHLRELL 102
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
++ + + V + D+ G ++ EF +
Sbjct: 103 TTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTR 136
Score = 43.3 bits (103), Expect = 2e-05
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
F +D + G + ++ L + +NP + + + + G ++F F+ +
Sbjct: 13 FNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGM-MSEAPGPINFTMFLTMFGEKLNG 71
Query: 305 GDRESKLKFAFRIYDIDND 323
D E ++ AF +D +
Sbjct: 72 TDPEDVIRNAFACFDEEAS 90
Score = 29.0 bits (66), Expect = 1.5
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 160 EKQKETSS--NINNAF----KDLNQLMSMAKEMVEISKNISNKIINRQGEITE--DDSNK 211
EK T I NAF ++ + + + E+ + ++ + E+ E ++
Sbjct: 67 EKLNGTDPEDVIRNAFACFDEEASGFIH-EDHLRELLTTMGDRFTDE--EVDEMYREAPI 123
Query: 212 DRDGKINFQEFCSIV 226
D+ G N+ EF I+
Sbjct: 124 DKKGNFNYVEFTRIL 138
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 50.3 bits (121), Expect = 1e-07
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
F +D + G + D+ + + + + +D ++ +G ++F F+ +
Sbjct: 31 FTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLTMFGEKLKG 90
Query: 305 GDRESKLKFAFRIYDIDND 323
D E + AF++ D D
Sbjct: 91 ADPEDVIMGAFKVLDPDGK 109
Score = 49.9 bits (120), Expect = 2e-07
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVV-----DIRRLGKRFRKLDLDNSGALSIDEF--- 262
K+ G INF F ++ G +K+ I F+ LD D G++
Sbjct: 69 KEASGPINFTVFLTMFG-----EKLKGADPEDVIMGA---FKVLDPDGKGSIKKSFLEEL 120
Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ ++ + F D G VD+K
Sbjct: 121 LTTGGGRFTPEEIKNMWAAFPPDVAGNVDYKNICY 155
Score = 29.1 bits (66), Expect = 2.1
Identities = 5/26 (19%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIV 226
EI D G ++++ C ++
Sbjct: 132 EIKNMWAAFPPDVAGNVDYKNICYVI 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 4e-07
Identities = 53/302 (17%), Positives = 86/302 (28%), Gaps = 120/302 (39%)
Query: 206 EDDSNKDRDG--KINFQEF-CSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
E D + EF + DIH + KL +N L +
Sbjct: 73 EPSKVGQFDQVLNLCLTEFENCYLEGNDIH--ALA---------AKLLQENDTTLVKTKE 121
Query: 263 M-------------SLPELQQNPLVQ-------RVIDIFDEDRNGEVDFKEFIQGVSQ-- 300
+ + + L + +++ IF G QG +
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF----GG--------QGNTDDY 169
Query: 301 FSVKGDRESKLKFAFRIYDIDNDDDYYQALGNELI---AALIEPLTSAGGTMLLTDAYCR 357
F E L+ +Y Y L +LI A + L T
Sbjct: 170 F-----EE--LR---DLYQT------YHVLVGDLIKFSAETLSELIR-------TTLDAE 206
Query: 358 INRARGLELLS----PEDLLNSCLALDKLPDSPIYLKTYS-S--GVKVLQLKSCEDASFV 410
+GL +L P + PD YL + S + V+QL
Sbjct: 207 KVFTQGLNILEWLENPSN----------TPDKD-YLLSIPISCPLIGVIQLAH------- 248
Query: 411 EKTYEIVSQNVFVTVEQF-SRLASVS-----LVIAKHRLLLAETHGKLCRDQSIEGLRFY 464
Y + ++ + T + S L + LV A + +AET S E F+
Sbjct: 249 ---YVVTAKLLGFTPGELRSYLKGATGHSQGLVTA---VAIAET-------DSWES--FF 293
Query: 465 EN 466
+
Sbjct: 294 VS 295
Score = 36.2 bits (83), Expect = 0.029
Identities = 42/221 (19%), Positives = 63/221 (28%), Gaps = 105/221 (47%)
Query: 5 EYCSFE------LSPDESPVLKHSNVRLYDGEN----------------KSQFQRGELIL 42
E +FE L P ++ HS L GE + F RG
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHS---L--GEYAALASLADVMSIESLVEVVFYRGMT-- 1792
Query: 43 TSHRLFWQKDITLCLALSYIQNAV---EEAKSMFNLTAGRKIILYLSKAVPGKNLGPSAT 99
+Q AV E +S + + A + P
Sbjct: 1793 -------------------MQVAVPRDELGRSNYGMIA----------------INPGRV 1817
Query: 100 SAYDYVKLSFREGIQNEFLDALKSTVDAKI-WTVQ----NKSAQQTKLREIKTRTGIV-- 152
+A E L + V + W V+ N QQ V
Sbjct: 1818 AA----------SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ-----------YVAA 1856
Query: 153 GIERNIVEKQKETSSNINNAFK----DLNQLM-SMAKEMVE 188
G R + +T +N+ N K D+ +L S++ E VE
Sbjct: 1857 GDLRAL-----DTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 30.0 bits (67), Expect = 2.4
Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 37/123 (30%)
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDI-- 320
M + +L + + D+++ D K + F I DI
Sbjct: 1631 MGM-DLYKTSKAAQ--DVWNR---------------------ADNHFKDTYGFSILDIVI 1666
Query: 321 DNDDDYY--------QALGNELIAALIEPLTSAGGTMLLTDAYCRIN-RARGLELLSPED 371
+N + + + A + E T G + + IN + S +
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFE--TIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 372 LLN 374
LL+
Sbjct: 1725 LLS 1727
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 45.9 bits (110), Expect = 4e-07
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
F K D + G LS+DEF + + + D D NGE++ EF
Sbjct: 7 FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61
Score = 32.5 bits (75), Expect = 0.030
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 22/64 (34%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR---------FRKLDLDNSGALSIDE 261
K++DGK++ EF + F ++D+D +G L+ DE
Sbjct: 12 KNKDGKLSLDEFREV-------------ALAFSPYFTQEDIVKFFEEIDVDGNGELNADE 58
Query: 262 FMSL 265
F S
Sbjct: 59 FTSC 62
Score = 27.1 bits (61), Expect = 2.3
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSI 225
+I + ++ + D +G++N EF S
Sbjct: 38 DIVKFFEEIDVDGNGELNADEFTSC 62
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 46.4 bits (111), Expect = 2e-06
Identities = 18/98 (18%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRR-LGKRFRKLDLDNSGALSIDEF 262
+ S++ + +++F+ F ++ + K + FR D + +G + E
Sbjct: 52 LGNPKSDELKSRRVDFETFLPML--QAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAEL 109
Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+L E V+ V+ ED NG ++++ F++
Sbjct: 110 RHVLTTLGEKMTEEEVETVLA-GHEDSNGCINYEAFLK 146
Score = 42.2 bits (100), Expect = 6e-05
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDR--NGEVDFKEFIQGVS 299
F D G + + + L QNP V +V+ D + VDF+ F+ +
Sbjct: 16 FELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQ 75
Query: 300 QFSVKGDRESK--LKFAFRIYDIDND 323
+ + + FR++D + +
Sbjct: 76 AVAKNRGQGTYEDYLEGFRVFDKEGN 101
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 155 ERNIVEKQKETSSNINNAF----KDLNQLMSMAKEMVEISKNISNKIINRQGE--ITEDD 208
+ + + T + F K+ N + E+ + + K+ + E + +
Sbjct: 75 QAVAKNRGQGTYEDYLEGFRVFDKEGNGKVM-GAELRHVLTTLGEKMTEEEVETVLAGHE 133
Query: 209 SNKDRDGKINFQEFCSIV 226
D +G IN++ F +
Sbjct: 134 ---DSNGCINYEAFLKHI 148
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 44.5 bits (106), Expect = 2e-06
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL----VQRVIDIFDEDRNGEVDFKEFIQ 296
F+ D + G + DEF + ++ + PL V+ + DED NG +D EF+
Sbjct: 14 FKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIPEFMD 69
Score = 27.5 bits (62), Expect = 2.3
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+ DG I+F EF I+ ++ ++ D D +G + I EFM L
Sbjct: 19 ANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEA---MKEADEDGNGVIDIPEFMDL 70
Score = 27.5 bits (62), Expect = 2.3
Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 183 AKEMVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSI 225
E I + + + + E+ E ++++D +G I+ EF +
Sbjct: 27 FDEFKFIMQKVGEEPLTDA-EVEEAMKEADEDGNGVIDIPEFMDL 70
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 46.4 bits (111), Expect = 2e-06
Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 34/112 (30%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVD------IRRLGKRFRKLDLDNSGA 256
+ K + + F+EF M + F+ D + G
Sbjct: 51 AVGGTH--KMGEKSLPFEEFLPA-----YEGLMDCEQGTFADYMEA---FKTFDREGQGF 100
Query: 257 LSIDEF----------MSLPELQQNPLVQRVIDIFD--EDRNGEVDFKEFIQ 296
+S E +S ++ + +I + D ED G V +++F++
Sbjct: 101 ISGAELRHVLTALGERLSDEDVDE------IIKLTDLQEDLEGNVKYEDFVK 146
Score = 40.2 bits (95), Expect = 3e-04
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 44/120 (36%)
Query: 208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE 267
D RDG ++ + + R LG
Sbjct: 19 DFWDGRDGAVDAFKLGDV-------------CRCLG------------------------ 41
Query: 268 LQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQF-SVKGDRESKLKFAFRIYDIDND 323
NP V V + + F+EF+ + + AF+ +D +
Sbjct: 42 --INPRNEDVFAVGGT-HKMGEKSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQ 98
Score = 32.9 bits (76), Expect = 0.095
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIV 226
I D +D +G + +++F V
Sbjct: 126 IKLTDLQEDLEGNVKYEDFVKKV 148
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 45.6 bits (108), Expect = 4e-06
Identities = 11/92 (11%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
+ +++ + DL+N G + + + +L ++++I + + +++
Sbjct: 48 KLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRD 107
Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD 325
F+ + G R + LK +++ ++
Sbjct: 108 FVN-----MMLGKRSAVLK-LVMMFEGKANES 133
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 46.2 bits (110), Expect = 5e-06
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 16/94 (17%)
Query: 211 KDRDGKINFQEFCSIVG----NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
+ G INF F +I G TD I F D + G +
Sbjct: 100 AEAPGPINFTMFLTIFGDRIAGTDEED----VIV---NAFNLFD-EGDGKCKEETLKRSL 151
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ E V + + D NG +D K+F Q
Sbjct: 152 TTWGEKFSQDEVDQALSEAPIDGNGLIDIKKFAQ 185
Score = 39.2 bits (92), Expect = 0.001
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
F+ +D D G +S ++ + L + Q + + + G ++F F+
Sbjct: 63 FQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSM-VAEAPGPINFTMFLTIFGDRIAG 121
Query: 305 GDRESKLKFAFRIYDIDN 322
D E + AF ++D +
Sbjct: 122 TDEEDVIVNAFNLFDEGD 139
Score = 28.4 bits (64), Expect = 3.5
Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 160 EKQKETSS--NINNAFK---DLNQLMSMAKEMVEISKNISNKIINRQGEITE--DDSNKD 212
++ T I NAF + + + + K E+ + ++ D
Sbjct: 117 DRIAGTDEEDVIVNAFNLFDEGDGKCK-EETLKRSLTTWGEKFSQD--EVDQALSEAPID 173
Query: 213 RDGKINFQEFCSIV 226
+G I+ ++F I+
Sbjct: 174 GNGLIDIKKFAQIL 187
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 45.2 bits (108), Expect = 6e-06
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
F +D+D G +S ++ +L + P + + + E G ++F F+ S
Sbjct: 24 FSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE-APGPLNFTMFLSIFSDKLSG 82
Query: 305 GDRESKLKFAFRIYDIDND 323
D E ++ AF ++D
Sbjct: 83 TDSEETIRNAFAMFDEQET 101
Score = 44.8 bits (107), Expect = 8e-06
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDEF----MS 264
K+ G +NF F SI K+ + F D + L+I+ +
Sbjct: 61 KEAPGPLNFTMFLSIFS-----DKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLEN 115
Query: 265 LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ + ++ + G+ D+ +F
Sbjct: 116 MGDNFNKDEMRMTFKEAPVE-GGKFDYVKFTA 146
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 44.9 bits (107), Expect = 7e-06
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPEL 268
+ + ++++ + K V ++ K F D + +G L+ + L
Sbjct: 57 KELYGDNLTYEQYLEYLSICVHDKDNVEELI---KMFAHFDNNCTGYLTKSQMKNILTTW 113
Query: 269 QQNPLVQRVIDIFDE-DRNGEVDFKEFIQGVSQ 300
Q ID + +D+K F + + Q
Sbjct: 114 GDALTDQEAIDALNAFSSEDNIDYKLFCEDILQ 146
Score = 39.5 bits (93), Expect = 4e-04
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
+ + G +SID +L P I E + ++++++ +S
Sbjct: 21 IYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKI-KELYGDNLTYEQYLEYLSICVHD 79
Query: 305 GDRESKLKFAFRIYDIDND 323
D +L F +D +
Sbjct: 80 KDNVEELIKMFAHFDNNCT 98
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 44.4 bits (106), Expect = 1e-05
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 16/94 (17%)
Query: 211 KDRDGKINFQEFCSIVG----NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---- 262
K+ G++NF F ++ G TD +R F D D G + D
Sbjct: 59 KECPGQLNFTAFLTLFGEKVSGTDPED----ALRNA---FSMFDEDGQGFIPEDYLKDLL 111
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
++ + ++ V N + ++ + +
Sbjct: 112 ENMGDNFSKEEIKNVWKDAPLK-NKQFNYNKMVD 144
Score = 41.7 bits (99), Expect = 1e-04
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
F +D D G + +++ L + P + + E G+++F F+ +
Sbjct: 22 FTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE-CPGQLNFTAFLTLFGEKVSG 80
Query: 305 GDRESKLKFAFRIYDIDND 323
D E L+ AF ++D D
Sbjct: 81 TDPEDALRNAFSMFDEDGQ 99
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 41.8 bits (99), Expect = 2e-05
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL--VQRVIDIFDEDRNGEVDFKEFIQ 296
F++ D + G +S+ E L L VQR++ D D +G +DF EFI
Sbjct: 9 FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFIS 62
Score = 27.5 bits (62), Expect = 2.3
Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
+ E D D DG I+F EF S
Sbjct: 44 MAEID--TDGDGFIDFNEFISF 63
Score = 27.5 bits (62), Expect = 2.4
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+ DGKI+ E + +++R+ ++D D G + +EF+S
Sbjct: 14 TNGDGKISLSELTDALRTLGSTSA--DEVQRM---MAEIDTDGDGFIDFNEFISF 63
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 43.3 bits (103), Expect = 2e-05
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
EITE + +++ ++F ++ M D K F+ D D +G + + E
Sbjct: 42 EITEIE--STLPAEVDMEQFLQVLN-RPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGEL 98
Query: 263 ----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
SL E N + ++ +G V++ +F+Q
Sbjct: 99 RYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 135
Score = 41.3 bits (98), Expect = 9e-05
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVK 304
F D +G + L QNP + + +I + EVD ++F+Q +++ +
Sbjct: 11 FSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEI-ESTLPAEVDMEQFLQVLNRPNGF 69
Query: 305 GDRESK--LKFAFRIYDIDND 323
F+++D D
Sbjct: 70 DMPGDPEEFVKGFQVFDKDAT 90
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 43.0 bits (101), Expect = 3e-05
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKE 293
+ ++ + DL+ +G + I L +L ++R+I + +
Sbjct: 46 KLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYSD 105
Query: 294 FIQGVSQFSVKGDRESKLKFAFRIYDIDNDD 324
F++ + G R + L+ +Y+ N +
Sbjct: 106 FLR-----MMLGKRSAILR-MILMYEEKNKE 130
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping,
EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB:
1h4b_A
Length = 86
Score = 41.5 bits (98), Expect = 3e-05
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEF 294
DI + F++ D + G +S E + + V+R++ D D +G + F EF
Sbjct: 9 DIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEF 68
Query: 295 IQ 296
Sbjct: 69 TD 70
Score = 29.1 bits (66), Expect = 0.76
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+ DGKI+ E + ++RR+ ++D D G +S DEF
Sbjct: 22 TNGDGKISSSELGDALKTLGSVTP--DEVRRM---MAEIDTDGDGFISFDEFTDF 71
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 202 GEITEDDSNK-------DRDGKINFQEFCSI 225
G +T D+ + D DG I+F EF
Sbjct: 41 GSVTPDEVRRMMAEIDTDGDGFISFDEFTDF 71
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 42.9 bits (102), Expect = 3e-05
Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 14/101 (13%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIV----GNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSI 259
+ + I F+EF ++ N D + D R D + +G +
Sbjct: 50 LGNPSKEEMNAAAITFEEFLPMLQAAANNKD--QGTFEDFVEG---LRVFDKEGNGTVMG 104
Query: 260 DEF----MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
E +L E V+ ++ ED NG ++++ F++
Sbjct: 105 AELRHVLATLGEKMTEEEVEELMK-GQEDSNGCINYEAFVK 144
Score = 41.0 bits (97), Expect = 2e-04
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDR--NGEVDFKEFIQGVS 299
F D ++ + L QNP + +++ ++ + F+EF+ +
Sbjct: 14 FLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLPMLQ 73
Query: 300 QFSVKGDRESK--LKFAFRIYDIDND 323
+ D+ + R++D + +
Sbjct: 74 AAANNKDQGTFEDFVEGLRVFDKEGN 99
Score = 27.5 bits (62), Expect = 6.5
Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIV 226
+ + D +G IN++ F +
Sbjct: 127 MKGQE---DSNGCINYEAFVKHI 146
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 42.6 bits (101), Expect = 5e-05
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 13/102 (12%)
Query: 203 EITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVV--DIRRLGKRFRKLDLDNSGALSID 260
+ K + +E I + + F+ D + G +S
Sbjct: 51 QHGGTK--KMGEKAYKLEEILPIYEEMSSKDTGTAADEFM---EAFKTFDREGQGLISSA 105
Query: 261 EF----MSLPELQQNPLVQRVIDIFD--EDRNGEVDFKEFIQ 296
E L E + D ED +G + +++ ++
Sbjct: 106 EIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147
Score = 39.9 bits (94), Expect = 5e-04
Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 45/121 (37%)
Query: 208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPE 267
D RDG ++ + + +R LG
Sbjct: 19 DFWDGRDGDVDAAKVGDL-------------LRCLG------------------------ 41
Query: 268 LQQNP---LVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESK--LKFAFRIYDIDN 322
NP V + + +E + + S K + AF+ +D +
Sbjct: 42 --MNPTEAQVHQHGGT-KKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREG 98
Query: 323 D 323
Sbjct: 99 Q 99
Score = 31.8 bits (73), Expect = 0.23
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIV 226
T D +D DG I +++ V
Sbjct: 127 FTFCDIREDIDGNIKYEDLMKKV 149
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 41.2 bits (97), Expect = 6e-05
Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
+ + DL+ +G + I L +L ++++I + +F++
Sbjct: 38 YMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYPDFLR 92
Score = 26.9 bits (60), Expect = 5.9
Identities = 4/32 (12%), Positives = 9/32 (28%), Gaps = 7/32 (21%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM 235
I E ++ +F + + K
Sbjct: 74 IGEVS--SGSGETFSYPDFLRM-----MLGKR 98
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 41.7 bits (99), Expect = 9e-05
Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF----MSLPE 267
+ + F ++ K + + FR LD + +G + E ++L +
Sbjct: 51 NAKE-FDLATFKTVY--RKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGD 107
Query: 268 LQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ V+ ++ +G ++++ F+
Sbjct: 108 ALTSSEVEELMKEVSVSGDGAINYESFVD 136
Score = 39.8 bits (94), Expect = 4e-04
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV- 303
F+ D DN G +SI+E +L L +NP + I + E D F +
Sbjct: 11 FQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIKT 70
Query: 304 KGDRESKLKFAFRIYDIDND 323
++ ++ AFR D + +
Sbjct: 71 PTEQSKEMLDAFRALDKEGN 90
Score = 27.5 bits (62), Expect = 5.2
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIV 226
E+ E + + DG IN++ F ++
Sbjct: 113 EVEELMKEVSVSGDGAINYESFVDML 138
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 40.3 bits (95), Expect = 1e-04
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ--GVS 299
F+ D D +G +S E + L + V+++I D D +G+V+++EF++
Sbjct: 15 FKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTV 74
Query: 300 QFSVKGDRESKLKFAFR 316
+ G+ S+L+ F
Sbjct: 75 RGGGGGNGWSRLRRKFS 91
Score = 26.4 bits (59), Expect = 7.3
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 211 KDRDGKINFQEFCSIV 226
D DG++N++EF ++
Sbjct: 56 LDGDGQVNYEEFVKMM 71
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 39.5 bits (93), Expect = 1e-04
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 246 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
F D D G +S E + + L QNP + +I+ DED +G +DF+EF+
Sbjct: 26 FDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLV 80
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 22/64 (34%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR---------FRKLDLDNSGALSIDE 261
D G I+ +E ++ +R LG+ ++D D SG + +E
Sbjct: 31 ADGGGDISTKELGTV-------------MRMLGQNPTKEELDAIIEEVDEDGSGTIDFEE 77
Query: 262 FMSL 265
F+ +
Sbjct: 78 FLVM 81
Score = 26.4 bits (59), Expect = 6.2
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 204 ITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM 235
I E D +D G I+F+EF + + ++M
Sbjct: 62 IEEVD--EDGSGTIDFEEFLVM-----MVRQM 86
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 43.4 bits (101), Expect = 1e-04
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 244 KRFRKLDLDNSGALSIDEFM----SLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVS 299
F D +G + ++F S+ R++ I D +R G V F+ FI +S
Sbjct: 729 ASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQAFIDFMS 788
Query: 300 QFSVKGDRESKLKFAFRIYDIDN----DDDYYQALGNELIAALIEPLTSAGGTMLLTDAY 355
+ + D ++ +F+I D D+ + L + I + G + A
Sbjct: 789 RETADTDTADQVMASFKILAGDKNYITVDELRRELPPDQAEYCIARMAPYNGRDAVPGAL 848
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 39.1 bits (92), Expect = 2e-04
Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 246 FRKLDLDNSGALSIDEF----------MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFI 295
F+KLD + G ++ E +L + + ++I + D++ +G++ +EF+
Sbjct: 13 FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFL 72
Query: 296 Q 296
Sbjct: 73 N 73
Score = 28.7 bits (65), Expect = 0.84
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 211 KDRDGKINFQEFCSI 225
K+ DGKI+ +EF +
Sbjct: 60 KNSDGKISKEEFLNA 74
Score = 28.4 bits (64), Expect = 1.2
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 308 ESKLKFAFRIYDIDND 323
+++L+ AF+ D + D
Sbjct: 6 KAELEAAFKKLDANGD 21
Score = 28.4 bits (64), Expect = 1.3
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRR--LGKRFRKLDLDNSGALSIDEFMSL 265
+ DG + E + + D +K + D + K + D ++ G +S +EF++
Sbjct: 18 ANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNA 74
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 39.6 bits (93), Expect = 2e-04
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 216 KINFQEFC---SIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQN 271
+ E S++ +TD + +IR + FR D D +G +S E + L +
Sbjct: 9 HGSSGENLYFQSLMKDTDSEE----EIR---EAFRVEDKDGNGYISAAELRHVMTNLGEK 61
Query: 272 PL---VQRVIDIFDEDRNGEVDFKEFIQ 296
V +I D D +G+V+++EF+Q
Sbjct: 62 LTDEEVDEMIREADIDGDGQVNYEEFVQ 89
Score = 29.9 bits (68), Expect = 0.48
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 282 DEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ E + D E +++ AFR+ D D +
Sbjct: 3 SHHHHHHGSSGENLY-FQSLMKDTDSEEEIREAFRVEDKDGN 43
Score = 28.0 bits (63), Expect = 2.1
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 161 KQKETSSNINNAF----KDLNQLMSMAKEMVEISKNISNKIINRQGE--ITEDDSNKDRD 214
K ++ I AF KD N +S A E+ + N+ K+ + + + I E D D D
Sbjct: 23 KDTDSEEEIREAFRVEDKDGNGYIS-AAELRHVMTNLGEKLTDEEVDEMIREAD--IDGD 79
Query: 215 GKINFQEFCSIV 226
G++N++EF ++
Sbjct: 80 GQVNYEEFVQMM 91
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
KD +G I+ E ++ N K ++ + R+ D+D G ++ +EF+ +
Sbjct: 40 KDGNGYISAAELRHVMTNLG-EKLTDEEVDEM---IREADIDGDGQVNYEEFVQM 90
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 42.8 bits (100), Expect = 2e-04
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 26/119 (21%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ 270
D GK+ F+EF K + +I++ +++ + D SG + +E +
Sbjct: 785 SDTTGKLGFEEF----------KYLWNNIKKWQGIYKRFETDRSGTIGSNELPGA--FEA 832
Query: 271 ------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ +I + D G +DF FI + R + AFR D +
Sbjct: 833 AGFHLNQHIYSMIIRRYS-DETGNMDFDNFISCLV-------RLDAMFRAFRSLDKNGT 883
Score = 41.3 bits (96), Expect = 7e-04
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 30/123 (24%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
++D +GK+ EF + IR FRK DLD SG++S E
Sbjct: 587 DRDGNGKLGLVEF----------NILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAA 636
Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDID 321
LP +V R F D +DF F++ + R L F+ D +
Sbjct: 637 GFKLPCQLHQVIVAR----FA-DDELIIDFDNFVRCLV-------RLEILFKIFKQLDPE 684
Query: 322 NDD 324
N
Sbjct: 685 NTG 687
Score = 33.6 bits (76), Expect = 0.16
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 12/56 (21%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
D G ++F F S + V + + + FR LD + +G ++I E++ L
Sbjct: 851 DETGNMDFDNFISCL----------VRLDAMFRAFRSLDKNGTGQIQVNIQEWLQL 896
Score = 30.5 bits (68), Expect = 1.4
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 249 LDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
+D D +G L +EF L + Q + F+ DR+G + E
Sbjct: 783 MDSDTTGKLGFEEFKYLWNNIKKW--QGIYKRFETDRSGTIGSNEL 826
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 38.3 bits (90), Expect = 3e-04
Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
F D + +G++ E +++ L + + +++ +D + NG + F +F+
Sbjct: 13 FDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLD 67
Score = 28.2 bits (64), Expect = 1.1
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 22/64 (34%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKR---------FRKLDLDNSGALSIDE 261
++ G I++ E +R LG + D + +G + D+
Sbjct: 18 TNKTGSIDYHELKVA-------------MRALGFDVKKPEILELMNEYDREGNGYIGFDD 64
Query: 262 FMSL 265
F+ +
Sbjct: 65 FLDI 68
Score = 26.3 bits (59), Expect = 6.4
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 203 EITE--DDSNKDRDGKINFQEFCSIVGN 228
EI E ++ +++ +G I F +F I+
Sbjct: 44 EILELMNEYDREGNGYIGFDDFLDIMTE 71
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 38.9 bits (91), Expect = 3e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
+ + + F K D D G +S E L L + + D G++ +F
Sbjct: 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLL-AHIWSLCDTKDCGKLSKDQF 66
Query: 295 IQG 297
Sbjct: 67 ALA 69
Score = 33.1 bits (76), Expect = 0.029
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF 262
+KD DG ++ E I T + ++ I L D + G LS D+F
Sbjct: 20 DKDMDGFVSGLEVREIFLKTGLPSTLLAHIWSLC------DTKDCGKLSKDQF 66
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 38.2 bits (89), Expect = 6e-04
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
+ +F+ + D +G + F + +L L + ++ D D++G + EF
Sbjct: 7 QRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILEL-SHIWELSDFDKDGALTLDEF 65
Query: 295 I 295
Sbjct: 66 C 66
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 41.3 bits (96), Expect = 6e-04
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 30/122 (24%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF------- 262
++D GK+ +EF + I++ K +R++D+D SG ++ E
Sbjct: 585 DEDGSGKLGLKEF----------YILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEA 634
Query: 263 -MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDID 321
LP +V R F D +DF F++ + R L F+ D +
Sbjct: 635 GFKLPCQLHQVIVAR----FA-DDELIIDFDNFVRCLV-------RLEILFKIFKQLDPE 682
Query: 322 ND 323
N
Sbjct: 683 NT 684
Score = 33.2 bits (75), Expect = 0.22
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA--LSIDEFMSL 265
D + I+F F + V + L K F++LD +N+G L + ++S
Sbjct: 652 DDELIIDFDNFVRCL----------VRLEILFKIFKQLDPENTGTIQLDLISWLSF 697
Score = 29.8 bits (66), Expect = 2.3
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 249 LDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
LD D SG L + EF L + Q++ D DR+G ++ E
Sbjct: 584 LDEDGSGKLGLKEFYIL--WTKIQKYQKIYREIDVDRSGTMNSYEM 627
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 39.2 bits (91), Expect = 6e-04
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 246 FRKLDLDNSGALSIDEFMS----------------LPELQQNPLVQRVIDIFDEDRNGEV 289
F+ D D + L E + + E + ++ V+ D++ +G +
Sbjct: 74 FKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYI 133
Query: 290 DFKEFIQGV 298
D+ EF + +
Sbjct: 134 DYAEFAKSL 142
Score = 33.0 bits (75), Expect = 0.082
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 8/51 (15%)
Query: 291 FKEFIQGVSQFSVKGDRESKLKF-AFRIYDIDNDD--DYYQALGNELIAAL 338
E ++GV +L+ F+++D D ++ D G EL A+
Sbjct: 49 IMEHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLD-----GLELSTAI 94
Score = 27.6 bits (61), Expect = 4.6
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCS 224
+ +DD K+ DG I++ EF
Sbjct: 122 LRDDD--KNNDGYIDYAEFAK 140
Score = 27.2 bits (60), Expect = 7.9
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 11/55 (20%)
Query: 280 IFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKF-----------AFRIYDIDND 323
+ D D N +D E ++ + E R D +ND
Sbjct: 76 MHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNND 130
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 38.2 bits (89), Expect = 7e-04
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
+ + F D SG L+ + + L Q L + ++ D D++G++ +EF
Sbjct: 12 SRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQL-ASIWNLSDIDQDGKLTAEEF 70
Query: 295 IQG 297
I
Sbjct: 71 ILA 73
Score = 34.7 bits (80), Expect = 0.013
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---MSLP 266
+K G + + +I+ + + + + I L D+D G L+ +EF M L
Sbjct: 24 DKTMSGHLTGPQARTILMQSSLPQAQLASIWNLS------DIDQDGKLTAEEFILAMHLI 77
Query: 267 ELQQN 271
++ +
Sbjct: 78 DVAMS 82
Score = 27.0 bits (60), Expect = 6.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 207 DDSNKDRDGKINFQEFC 223
+ S+ D+DGK+ +EF
Sbjct: 55 NLSDIDQDGKLTAEEFI 71
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 37.1 bits (87), Expect = 7e-04
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNP---LVQRVIDIFDEDRNGEVDFKEFIQ 296
FR D D G +++DE ++ L Q + +I D D++G V+++EF +
Sbjct: 12 FRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFAR 66
Score = 26.7 bits (60), Expect = 3.1
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI 225
I E D D+DG++N++EF +
Sbjct: 48 IREAD--VDQDGRVNYEEFARM 67
Score = 25.9 bits (58), Expect = 6.9
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+D DG I E + ++ + R+ D+D G ++ +EF +
Sbjct: 17 QDGDGHITVDELRRAMAGLG-QPLPQEELDAM---IREADVDQDGRVNYEEFARM 67
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 36.8 bits (86), Expect = 0.001
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 246 FRKLDLD--NSGALSIDEFMS-LPELQQNPL-----VQRVIDIFDEDRNGEVDFKEFIQ 296
F + +S +E + L + L + +I+ D++ +GEV F+EF+
Sbjct: 11 FEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLV 69
Score = 32.6 bits (75), Expect = 0.039
Identities = 8/49 (16%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 183 AKEMVEISKNISNKIINRQGEITE--DDSNKDRDGKINFQEFCSIVGNT 229
+E+ + + + ++ + E ++ +K+ DG+++F+EF ++
Sbjct: 26 KEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKKI 74
Score = 28.7 bits (65), Expect = 0.78
Identities = 8/58 (13%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 208 DSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+ + +I+ +E ++ ++ + L + ++D + G +S +EF+ +
Sbjct: 15 AAKEGDPNQISKEELKLVMQTLG--PSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVM 70
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 40.4 bits (95), Expect = 0.001
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 8/123 (6%)
Query: 177 NQLMSMAKEMVEISKN----ISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIH 232
+++ + ++++E N K+ + E ++ + ++F F
Sbjct: 318 QEIIKVTEQLIEAISNGDFESYTKMCDPGMTAFEPEALGNLVEGLDFHRF---YFENLWS 374
Query: 233 KKMVVDIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDRNGEVDF 291
+ + L D S ++ L Q R+G+
Sbjct: 375 RNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQI 434
Query: 292 KEF 294
F
Sbjct: 435 VHF 437
Score = 32.7 bits (75), Expect = 0.29
Identities = 6/82 (7%), Positives = 21/82 (25%), Gaps = 6/82 (7%)
Query: 242 LGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQF 301
+ + ++ ++G + + + + P + + +DF F
Sbjct: 321 IKVTEQLIEAISNG--DFESYTKMCD----PGMTAFEPEALGNLVEGLDFHRFYFENLWS 374
Query: 302 SVKGDRESKLKFAFRIYDIDND 323
+ + D
Sbjct: 375 RNSKPVHTTILNPHIHLMGDES 396
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 36.6 bits (85), Expect = 0.001
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 252 DNSGALSIDEFMSL-----PELQQNP-LVQRVIDIFDEDRNGEVDFKEFIQ 296
+ LS +E L P L + P + + D++ +GEV F+EF
Sbjct: 21 GDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQV 71
Score = 28.9 bits (65), Expect = 0.65
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 207 DDSNKDRDGKINFQEFCSIVG 227
+ +K+ DG+++F+EF +V
Sbjct: 54 QELDKNGDGEVSFEEFQVLVK 74
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 37.4 bits (87), Expect = 0.002
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
+FR L D S +S F + +L L + ++ D D +G + EF
Sbjct: 20 QREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPEL-SYIWELSDADCDGALTLPEF 78
Query: 295 I 295
Sbjct: 79 C 79
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 36.7 bits (85), Expect = 0.002
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSV 303
N A+ D+ L P+ + D + +G V+F+EF+ V + V
Sbjct: 24 GNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQEFLILVIKMGV 80
Score = 32.1 bits (73), Expect = 0.086
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 210 NKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRR 241
+ + DG +NFQEF +V HKK + +
Sbjct: 59 DINTDGAVNFQEFLILVIKMGVAAHKKSHEESHK 92
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 38.4 bits (89), Expect = 0.002
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 212 DRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGA-LSIDEFMSL 265
D G+++F ++ + + K FR L D G L+ E+MSL
Sbjct: 126 DSVGRVSFPSLVC----------FLMRLEAMAKTFRNLSKDGKGLYLTEMEWMSL 170
Score = 34.5 bits (79), Expect = 0.029
Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 23/120 (19%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ 269
+G+++ +EF + + F+K+ LS D + ++
Sbjct: 56 ELKVNGRLDQEEFAR----------LWKRLVHYQHVFQKVQTSPGVLLSSDLWKAIENTD 105
Query: 270 Q------NPLVQRVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDND 323
+ + ++ + D G V F + + R + FR D
Sbjct: 106 FLRGIFISRELLHLVTLRYSDSVGRVSFPSLVCFLM-------RLEAMAKTFRNLSKDGK 158
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 246 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDRNGEVDFKEFIQ 296
F+ D DN L+ +E + L NP + ++ +D+D +G+ D + F+
Sbjct: 20 FQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLT 74
Score = 26.5 bits (59), Expect = 5.3
Identities = 11/55 (20%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
KD D K+ +E +++ + +++ + + D DNSG + F+++
Sbjct: 25 KDNDNKLTAEELGTVMRALGAN----PTKQKISEIVKDYDKDNSGKFDQETFLTI 75
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 38.9 bits (90), Expect = 0.002
Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 239 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV 298
I L + +L+ +++ +++ + + + +++++D R G + F G+
Sbjct: 106 INCLTTIYDRLEQEHNNLVNVPLCVDM-------CLNWLLNVYDTGRTGRIRVLSFKTGI 158
Query: 299 SQFSVKGDRESKLKFAFRIYD 319
K E K ++ F+
Sbjct: 159 ISLC-KAHLEDKYRYLFKQVA 178
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 34.7 bits (80), Expect = 0.007
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 252 DNSGALSIDEFMSL--PELQQNPL----VQRVIDIFDEDRNGEVDFKEFI 295
+ LS E L EL + + ++ D++ + E+DFKE+
Sbjct: 24 GSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFKEYS 73
Score = 29.0 bits (65), Expect = 0.78
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 210 NKDRDGKINFQEFCSIVGN--TDIHKKMVVD 238
+K+ D +I+F+E+ + + + D
Sbjct: 60 DKNSDQEIDFKEYSVFLTMLCMAYNDFFLED 90
Score = 27.0 bits (60), Expect = 4.4
Identities = 6/58 (10%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
Query: 209 SNKDRD-GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
S ++ ++ +E ++ +M + + LD ++ + E+
Sbjct: 20 SGREGSKLTLSRKELKELIKKELCLGEM--KESSIDDLMKSLDKNSDQEIDFKEYSVF 75
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 34.8 bits (80), Expect = 0.009
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 253 NSGALSIDEFMSLPE------LQQNPLVQRVIDIFDEDRNGEVDFKEFI 295
+LS++EF L L+ + + D +++ E+ F E+
Sbjct: 37 RKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFNEYW 85
Score = 33.6 bits (77), Expect = 0.028
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 211 KDRDGKINFQEFCSIVGN--TDIHKKMVVDIRR 241
++D ++ F E+ ++G +I KK + IR+
Sbjct: 73 VNQDSELKFNEYWRLIGELAKEIRKKKDLKIRK 105
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 34.8 bits (80), Expect = 0.010
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 244 KRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFI 295
K +R+++ N+G + + F+ L L ++ D+ D D G + +EF
Sbjct: 15 KYYRQVEAGNTGRVLALDAAAFLKKSGLPDLIL-GKIWDLADTDGKGVLSKQEFF 68
Score = 27.9 bits (62), Expect = 2.6
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 210 NKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEF---MSLP 266
G++ + + + + + + LGK + D D G LS EF + L
Sbjct: 21 EAGNTGRVLALDAAAFLKKSGLPDLI------LGKIWDLADTDGKGVLSKQEFFVALRLV 74
Query: 267 ELQQN 271
QN
Sbjct: 75 ACAQN 79
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 37.2 bits (85), Expect = 0.013
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 211 KDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQ 269
K++D K+NF+E + +I VD K FR+ D + +L +E + L
Sbjct: 22 KNKDNKMNFKELKDFLKELNIQ----VDDGYARKIFRECDHSQTDSLEDEEIETFYKMLT 77
Query: 270 QNPLVQRVIDIFDEDRNG--EVDFKEFIQ 296
Q + R + F+Q
Sbjct: 78 QRAEIDRAFEEAAGSAETLSVERLVTFLQ 106
Score = 30.3 bits (67), Expect = 1.5
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 276 RVIDIFDEDRNGEVDFKEFIQGVSQFSVKGDRESKLKFAFRIYDIDNDDD 325
+ D++++ +++FKE + + +++ D + + FR D D
Sbjct: 15 SCLRKADKNKDNKMNFKELKDFLKELNIQVD-DGYARKIFRECDHSQTDS 63
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 34.0 bits (78), Expect = 0.014
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 252 DNSGALSIDEFMSLPELQ-------QNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ LS E L + + Q+ + R+++ D +++ EV+F+E++
Sbjct: 24 GDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVT 75
Score = 29.7 bits (67), Expect = 0.48
Identities = 6/19 (31%), Positives = 15/19 (78%)
Query: 210 NKDRDGKINFQEFCSIVGN 228
++++D ++NFQE+ + +G
Sbjct: 61 DRNKDQEVNFQEYVTFLGA 79
Score = 28.6 bits (64), Expect = 1.2
Identities = 6/58 (10%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 209 SNKDRD-GKINFQEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
S ++ D ++ +E ++ ++ + + + LD + ++ E+++
Sbjct: 20 SGREGDKHTLSKKELKELI-QKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTF 76
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 34.1 bits (78), Expect = 0.022
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDRNGEVDFKEFI 295
+ L+ E L P Q+++ D +R+ EVDF+E+
Sbjct: 36 GDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 88
Score = 30.3 bits (68), Expect = 0.39
Identities = 6/38 (15%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 210 NKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGKR 245
+ +RD +++FQE+C + ++ + ++
Sbjct: 75 DSNRDNEVDFQEYCVFLSCIAMMCNEFFEGFPDKQPRK 112
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 33.6 bits (77), Expect = 0.026
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDRNGEVDFKEFI 295
+ LS E L +N + + D +++ +VDF+EFI
Sbjct: 26 GHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFI 78
Score = 30.9 bits (70), Expect = 0.19
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 211 KDRDGKINFQEFCSIVG------NTDIHKK 234
++D +++FQEF S+V + HK+
Sbjct: 66 ANQDEQVDFQEFISLVAIALKAAHYHTHKE 95
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 35.3 bits (80), Expect = 0.026
Identities = 27/136 (19%), Positives = 47/136 (34%), Gaps = 7/136 (5%)
Query: 177 NQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKM- 235
++L M + KN+ + R E + K + E + D +K
Sbjct: 92 SELTEFPLRMRDWLKNVLVTLYERD-EDNNLLTEKQKLRVKKIHENEKRLEAGDHPEKNY 150
Query: 236 VVDIRRLGKRFRKLDLDNS-GALSIDEFMSL--PELQQNPLVQRVIDIFDEDRNGEVDFK 292
+ I + +F +LD G LS E L P + R + D D + +
Sbjct: 151 NMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALD 210
Query: 293 EFIQ--GVSQFSVKGD 306
E+ G+ Q + D
Sbjct: 211 EWAGCFGIKQKDIDKD 226
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 33.7 bits (77), Expect = 0.028
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDRNGEVDFKEFI 295
+ L+ E L P Q+++ D +R+ EVDF+E+
Sbjct: 27 GDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 79
Score = 31.0 bits (70), Expect = 0.23
Identities = 6/38 (15%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 210 NKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGKR 245
+ +RD +++FQE+C + + ++ + ++
Sbjct: 66 DSNRDNEVDFQEYCVFLSSIAMMSNEFFEGFPDKQPRK 103
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 33.2 bits (76), Expect = 0.032
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 253 NSGALSIDEFMSL---------PELQQNPLVQRVIDIFDEDRNGEVDFKEFI 295
+ G L+ ++ L + V +++ D+ R+G+V F+ F
Sbjct: 21 DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFF 72
Score = 33.2 bits (76), Expect = 0.036
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 211 KDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGKR 245
+ RDGK+ FQ F S++ + VV +++ GK+
Sbjct: 60 QCRDGKVGFQSFFSLIAGLTIACNDYFVVHMKQKGKK 96
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 33.3 bits (76), Expect = 0.037
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 253 NSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDRNGEVDFKEFI 295
+ L E L + + + D +++ EVDF E++
Sbjct: 25 DKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYV 76
Score = 29.8 bits (67), Expect = 0.58
Identities = 3/18 (16%), Positives = 10/18 (55%)
Query: 211 KDRDGKINFQEFCSIVGN 228
++D +++F E+ +
Sbjct: 64 TNKDCEVDFVEYVRSLAC 81
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 32.9 bits (75), Expect = 0.037
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDRNGEVDFKEFI 295
+ L+ E L P Q+++ D +R+ EVDF+E+
Sbjct: 24 GDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYC 76
Score = 29.4 bits (66), Expect = 0.58
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 210 NKDRDGKINFQEFCSIVGN 228
+ +RD +++FQE+C +
Sbjct: 63 DSNRDNEVDFQEYCVFLSC 81
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 32.9 bits (75), Expect = 0.043
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPLVQRVID----IFDEDRNGEVDFKEFI 295
+ LS E L P + + + DE+ + +VDF+E+
Sbjct: 25 GDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQEYA 77
Score = 29.4 bits (66), Expect = 0.67
Identities = 4/19 (21%), Positives = 12/19 (63%)
Query: 210 NKDRDGKINFQEFCSIVGN 228
+++ D +++FQE+ +
Sbjct: 64 DENSDQQVDFQEYAVFLAL 82
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 32.9 bits (75), Expect = 0.045
Identities = 7/60 (11%), Positives = 19/60 (31%), Gaps = 9/60 (15%)
Query: 245 RFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIF----DEDRNGEVDFKEFI 295
++ +S F + + + ++ D D + +G + F E+
Sbjct: 19 KYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEYW 78
Score = 30.9 bits (70), Expect = 0.19
Identities = 8/34 (23%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 210 NKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRR 241
+ + DG+I+F E+ +++G I K + ++
Sbjct: 65 DANHDGRISFDEYWTLIGGITGPIAKLIHEQEQQ 98
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 32.5 bits (74), Expect = 0.063
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNP----LVQRVIDIFDEDRNGEVDFKEFI 295
+ LS E L + + LV+++++ D +++ EVDF EF+
Sbjct: 24 GDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFV 76
Score = 31.7 bits (72), Expect = 0.095
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 210 NKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGK 244
+ ++D +++F EF +V + ++ K
Sbjct: 63 DSNKDNEVDFNEFVVLVAALTVACNDFFQEQQKKRSK 99
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 32.1 bits (73), Expect = 0.075
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPLVQRVIDIF----DEDRNGEVDFKEFI 295
++ L+ E L P Q+ + +D D + + +VDF EFI
Sbjct: 23 GSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFI 75
Score = 28.6 bits (64), Expect = 1.1
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 210 NKDRDGKINFQEFCSIVGN 228
+ + D +++F EF V
Sbjct: 62 DANGDAQVDFSEFIVFVAA 80
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 32.1 bits (73), Expect = 0.077
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 260 DEFMSLPELQQNP-LVQRVIDIFDEDRNGEVDFKEFI 295
E S ++Q++ V +++ DE+ +GEVDF+EF+
Sbjct: 39 TELSSFLDVQKDADAVDKIMKELDENGDGEVDFQEFV 75
Score = 29.4 bits (66), Expect = 0.77
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 211 KDRDGKINFQEFCSIVGN 228
++ DG+++FQEF +V
Sbjct: 63 ENGDGEVDFQEFVVLVAA 80
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 32.1 bits (73), Expect = 0.090
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPLVQRVID----IFDEDRNGEVDFKEFI 295
N+ +S EF+ QN V+D D D +G++DF+EF+
Sbjct: 27 GNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQEFL 79
Score = 29.8 bits (67), Expect = 0.48
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 210 NKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRR 241
+ D DG+++FQEF +++G H + ++
Sbjct: 66 DLDSDGQLDFQEFLNLIGGLAIACHDSFIKSTQK 99
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 31.7 bits (72), Expect = 0.11
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 252 DNSGALSIDEFMSL---------PELQQNPLVQRVIDIFDEDRNGEVDFKEFI 295
+ L E L E+++ +V +V++ D + +GE DF+EF+
Sbjct: 23 GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQEFM 75
Score = 29.0 bits (65), Expect = 0.93
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 210 NKDRDGKINFQEFCSIVG------NTDIHKK 234
+ + DG+ +FQEF + V + +
Sbjct: 62 DSNGDGECDFQEFMAFVAMITTACHEFFEHE 92
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.15
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 12/39 (30%)
Query: 302 SVKGDRESKLKFAFRIYDIDNDDDYYQALGNELIAALIE 340
++K KL+ + ++Y DD AL I A +E
Sbjct: 21 ALK-----KLQASLKLY----ADDSAPALA---IKATME 47
Score = 30.3 bits (67), Expect = 0.72
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 1 MDRFEYCSFEL-SPDESPVL 19
+ + + S +L + D +P L
Sbjct: 22 LKKLQ-ASLKLYADDSAPAL 40
Score = 28.4 bits (62), Expect = 3.3
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 233 KKMVVDIRRLGKRFRKLDLDNSGALSID 260
K+ +++L + D++ AL+I
Sbjct: 19 KQ---ALKKLQASLKLYADDSAPALAIK 43
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 31.3 bits (71), Expect = 0.16
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 261 EFMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFI 295
F+S + + + V + D++ + ++DF EF+
Sbjct: 41 NFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFL 75
Score = 31.3 bits (71), Expect = 0.17
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 174 KDLNQLMSMAKEMVEISKNISNKIINRQGEITED-DSNKDRDGKINFQEFCSIVGN--TD 230
L +M + K N ++ E D N+D KI+F EF S++G+ TD
Sbjct: 29 PSLLTMMK--ENFPNFLSACDKKGTNYLADVFEKKDKNED--KKIDFSEFLSLLGDIATD 84
Query: 231 IHKKM 235
HK+
Sbjct: 85 YHKQS 89
Score = 27.4 bits (61), Expect = 4.0
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 220 QEFCSIVGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+ F + + D + F K D + + EF+SL
Sbjct: 37 ENFPNFLSACDKKGTNYLA-----DVFEKKDKNEDKKIDFSEFLSL 77
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 31.4 bits (71), Expect = 0.16
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 252 DNSGALSIDEFMSL-----PELQQNPL-----VQRVIDIFDEDRNGEVDFKEFIQGV 298
+ L+ EF L + ++ +++ D + + ++ F+EFI +
Sbjct: 26 GHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIMLM 82
Score = 29.5 bits (66), Expect = 0.75
Identities = 5/31 (16%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 210 NKDRDGKINFQEFCSIVG------NTDIHKK 234
+ + D +++F+EF ++ + +H+
Sbjct: 66 DTNADKQLSFEEFIMLMARLTWASHEKMHEG 96
Score = 28.7 bits (64), Expect = 1.8
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 209 SNKDRDGKINFQEFCSIVGN--TDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
+N EF +V + KK + + + LD + LS +EF+ L
Sbjct: 23 VKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFEEFIML 81
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 31.4 bits (71), Expect = 0.23
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
+ + ++F L SG ++ D+ F L Q L ++ + D + +G +D EF
Sbjct: 31 ERAKHDQQFHSLK-PISGFITGDQARNFFFQSGLPQPVL-AQIWALADMNNDGRMDQVEF 88
Query: 295 IQG 297
Sbjct: 89 SIA 91
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 32.0 bits (72), Expect = 0.26
Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 185 EMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNTDIHKKMVVDIRRLGK 244
E+ + + ++++ + + D +K+ DG++ +E I+ + K+ R +
Sbjct: 83 ELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADE 142
Query: 245 R----FRKLDLDNSGALSIDEFMSLPELQQNPLVQR 276
+LD N G + +++ +L + R
Sbjct: 143 YTALIMEELDPTNLGYIEMEDLEALLLQSPSEAAAR 178
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 30.1 bits (68), Expect = 0.44
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 238 DIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDRNGEVDFKEF 294
D + F L +G LS D+ + +L + L RV ++ D D +G +D EF
Sbjct: 13 DKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKLPVDIL-GRVWELSDIDHDGMLDRDEF 70
Query: 295 I 295
Sbjct: 71 A 71
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 29.9 bits (67), Expect = 0.56
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 211 KDRDGKINFQEFCSIVGN-----------TDIHKKMVVDIRRLGKR-FRKLDLDNSGALS 258
+ DG ++ QE ++ D ++M + R+ + + +D + ++
Sbjct: 31 INSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKNVDTNQDRLVT 90
Query: 259 IDEFM 263
++EF+
Sbjct: 91 LEEFL 95
Score = 28.0 bits (62), Expect = 2.1
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 23/93 (24%)
Query: 228 NTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDEFMSL--------------------PE 267
D + + F D+++ G L E +L E
Sbjct: 11 ELDGLDPNRFNPKTF---FILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREME 67
Query: 268 LQQNPLVQRVIDIFDEDRNGEVDFKEFIQGVSQ 300
++ + + V+ D +++ V +EF+ +
Sbjct: 68 EERLRMREHVMKNVDTNQDRLVTLEEFLASTQR 100
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 31.1 bits (69), Expect = 0.88
Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 7/96 (7%)
Query: 204 ITEDDSNKDRDGKINFQEFCSI--VGNTDIHKKMVVDIRRLGKRFRKLDLDNSGALSIDE 261
+ + + +GKI + F + + + K D N
Sbjct: 152 LVKLKMQLNSEGKIPVKNFFQMFPADRKRVEAALS----ACHLPKGKNDAINPEDFPEPV 207
Query: 262 FMSL-PELQQNPLVQRVIDIFDEDRNGEVDFKEFIQ 296
+ S L P + + + + + +
Sbjct: 208 YKSFLMSLCPRPEIDEIFTSYHAKAKPYMTKEHLTK 243
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex,
hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP:
b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Length = 528
Score = 31.0 bits (69), Expect = 1.1
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 13 PDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ 50
P E+ +V + RG L +T++RL+++
Sbjct: 11 PGENIKDMAKDVTYICPFTGAV--RGTLTVTNYRLYFK 46
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis
complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB:
1hvv_A* 1urq_B
Length = 77
Score = 28.4 bits (64), Expect = 1.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 142 LREIKTR-TGIVGIERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVE-ISKNISN 195
L EI+TR + I+ +E +I E +++ F D+ L+ EM++ I N+ +
Sbjct: 2 LSEIETRHSEIIKLENSIRE--------LHDMFMDMAMLVESQGEMIDRIEYNVEH 49
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex,
hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3
PDB: 1m7r_A
Length = 657
Score = 29.9 bits (66), Expect = 2.2
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 13 PDESPVLKHSNVRLYDGENKSQFQRGELILTSHRLFWQ 50
P E+ +V + RG L +T++RL+++
Sbjct: 83 PGENIKDMAKDVTYICPFTGAV--RGTLTVTNYRLYFK 118
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 27.6 bits (62), Expect = 4.2
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 230 DIHKKMVVDIRRL----GKRFRKLDLDNSGALSIDEFMSLPELQQNP-LVQRVIDIFDED 284
I + + K F+KL+++ ++ + + L + ++P L++R I I DE
Sbjct: 45 QILRMTEDGTDEIISTRSKVFQKLNVNVE-SMPLQDLYRL--INEHPGLLRRPI-IIDEK 100
Query: 285 R 285
R
Sbjct: 101 R 101
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 28.3 bits (64), Expect = 5.1
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 145 IKTRTGIVGIERNIVEKQKETSS 167
I RTG+ R VE ++ S+
Sbjct: 56 IVERTGVR--TRYHVEPEQAVSA 76
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 28.2 bits (64), Expect = 5.7
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 145 IKTRTGIVGIERNIVEKQKETSS 167
I TGI ER+ + ++TS
Sbjct: 33 ISKMTGIK--ERHWADDDQDTSD 53
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 6.2
Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 155 ERNIVEKQKETSSNINNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRD 214
E + K E A KDL + E VE KN N NR I + + D
Sbjct: 100 ELDAASKVME-QEWREKAKKDLEEWNQRQSEQVE--KNKIN---NR---IADKAFYQQPD 150
Query: 215 GKI 217
I
Sbjct: 151 ADI 153
>3l78_A Regulatory protein SPX; transcription, transcriptional factor,
disulfide bond, redox-active center, transcription
regulati; 1.90A {Streptococcus mutans}
Length = 120
Score = 26.8 bits (60), Expect = 7.0
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 230 DIHKKMVVDIRRL----GKRFRKLDLDNSGALSIDEFMSLPELQQNP-LVQRVIDIFDED 284
I + K F+KLD+D LS+ E ++L + +NP L++R I I D
Sbjct: 44 KILSYTENGTEDIISTRSKVFQKLDIDVD-ELSVSELINL--ISKNPSLLRRPI-IMDNK 99
Query: 285 R 285
R
Sbjct: 100 R 100
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 27.8 bits (63), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 145 IKTRTGIVGIERNIVEKQKETSS 167
I TR+GI ER I + + ++
Sbjct: 40 IVTRSGIR--ERRIAAEDETVAT 60
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 28.1 bits (61), Expect = 7.4
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 170 NNAFKDLNQLMSMAKEMVEISKNISNKIINRQGEITEDDSNKDRDGKINFQEFCSIVGNT 229
++L +L N S R+ T+ ++DG+I + +
Sbjct: 128 KVWSEELFKLAMNILAQ-----NASRNTFLRK-AYTKLKLQVNQDGRIPVKNILKMF--- 178
Query: 230 DIHKKMV-VDIRRLGKRFRKLDLDNSGALSIDEFMSL 265
KK V + G +F + + S++ F
Sbjct: 179 SADKKRVETALESCGLKFNRSESIRPDEFSLEIFERF 215
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 27.7 bits (62), Expect = 7.8
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 16/78 (20%)
Query: 263 MSLPELQQNPLVQRVIDIFDEDRNGEVDFKEFIQGV---SQFSVKG-----------DRE 308
M + E +PL V + N + I+G + F V+G DRE
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSVGNKNAMY--IIEGESANTIFKVQGYDGDIYAFERLDRE 64
Query: 309 SKLKFAFRIYDIDNDDDY 326
K ++ + ID ++
Sbjct: 65 KKAEYELTAHIIDRRNNR 82
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 27.8 bits (63), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 145 IKTRTGIVGIERNIVEKQKETSS 167
I TRTGI ER+I + S+
Sbjct: 33 IVTRTGIR--ERHIAAPNETVST 53
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 27.8 bits (63), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 145 IKTRTGIVGIERNIVEKQKETSS 167
I TRTGI ER + + + TS
Sbjct: 32 IVTRTGIK--ERRVAAEDEYTSD 52
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Length = 512
Score = 27.9 bits (61), Expect = 8.5
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 23 NVRLYD-GENKSQFQRGELILTSHRLFW 49
V+L D ++ G L LT+ L +
Sbjct: 11 QVKLLDRFSTSNKSLTGTLYLTATHLLF 38
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 27.9 bits (63), Expect = 8.8
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 145 IKTRTGIVGIERNIVEKQKETSS 167
I RTGI R E TS
Sbjct: 47 IVARTGIH--ARYFAEPDVTTSD 67
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 27.5 bits (62), Expect = 9.7
Identities = 3/23 (13%), Positives = 6/23 (26%), Gaps = 2/23 (8%)
Query: 145 IKTRTGIVGIERNIVEKQKETSS 167
+ G+ R + Q
Sbjct: 48 VVKMIGVN--RRRWADAQTSAGD 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.374
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,019,618
Number of extensions: 430762
Number of successful extensions: 2291
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1562
Number of HSP's successfully gapped: 515
Length of query: 473
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,993,456
Effective search space: 1501539456
Effective search space used: 1501539456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)