Query psy414
Match_columns 176
No_of_seqs 120 out of 145
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:56:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1du6_A PBX1, homeobox protein 46.7 14 0.00046 23.6 2.6 21 36-57 27-47 (64)
2 1k61_A Mating-type protein alp 46.2 15 0.0005 23.1 2.6 20 37-57 23-42 (60)
3 1x2n_A Homeobox protein pknox1 45.4 14 0.0005 24.2 2.6 20 37-57 32-51 (73)
4 1puf_B PRE-B-cell leukemia tra 38.2 21 0.00073 23.3 2.6 20 37-57 26-45 (73)
5 2dmn_A Homeobox protein TGIF2L 37.5 22 0.00076 24.1 2.6 20 37-57 32-51 (83)
6 1b72_B Protein (PBX1); homeodo 33.8 27 0.00092 23.6 2.6 21 36-57 25-45 (87)
7 2kr6_A Presenilin-1; protease, 32.2 32 0.0011 27.6 3.1 36 126-162 112-147 (176)
8 3k2a_A Homeobox protein MEIS2; 32.1 32 0.0011 22.4 2.6 21 36-57 22-42 (67)
9 1mnm_C Protein (MAT alpha-2 tr 31.4 32 0.0011 23.3 2.6 20 37-57 52-71 (87)
10 1akh_A Protein (mating-type pr 31.2 32 0.0011 21.5 2.5 19 38-57 28-46 (61)
11 3a03_A T-cell leukemia homeobo 30.4 35 0.0012 21.1 2.5 20 37-57 19-38 (56)
12 3a02_A Homeobox protein arista 26.9 42 0.0015 20.9 2.5 20 37-57 21-40 (60)
13 1le8_B Mating-type protein alp 26.4 44 0.0015 22.5 2.6 21 37-58 27-47 (83)
14 2k40_A Homeobox expressed in E 25.9 46 0.0016 21.3 2.5 20 37-57 23-42 (67)
15 2dmu_A Homeobox protein goosec 25.9 45 0.0015 21.5 2.5 21 37-58 29-49 (70)
16 2lx0_A Membrane fusion protein 25.7 82 0.0028 18.2 3.2 21 128-149 6-26 (32)
17 1bw5_A ISL-1HD, insulin gene e 24.5 50 0.0017 21.0 2.5 20 37-57 25-44 (66)
18 2da2_A Alpha-fetoprotein enhan 23.8 57 0.0019 20.9 2.7 20 37-57 29-48 (70)
19 2hdd_A Protein (engrailed home 23.6 54 0.0019 20.5 2.5 20 37-57 25-44 (61)
20 2h1k_A IPF-1, pancreatic and d 23.4 55 0.0019 20.6 2.5 20 37-57 25-44 (63)
21 1qzm_A ATP-dependent protease 23.2 39 0.0013 24.1 1.9 12 42-53 4-15 (94)
22 1uhs_A HOP, homeodomain only p 22.7 56 0.0019 21.2 2.5 21 37-58 24-44 (72)
23 2e19_A Transcription factor 8; 22.5 58 0.002 21.1 2.5 21 37-58 25-45 (64)
24 1jgg_A Segmentation protein EV 22.3 60 0.002 20.2 2.5 20 37-57 23-42 (60)
25 1ftt_A TTF-1 HD, thyroid trans 22.1 49 0.0017 21.3 2.1 20 37-57 24-43 (68)
26 2cra_A Homeobox protein HOX-B1 21.7 66 0.0023 20.7 2.7 21 37-58 29-49 (70)
27 1ig7_A Homeotic protein MSX-1; 21.4 76 0.0026 19.4 2.9 20 37-57 22-41 (58)
28 2e1o_A Homeobox protein PRH; D 21.4 67 0.0023 20.7 2.7 21 37-58 29-49 (70)
29 2vi6_A Homeobox protein nanog; 20.6 69 0.0024 20.0 2.6 20 37-57 25-44 (62)
30 2dms_A Homeobox protein OTX2; 20.5 69 0.0024 21.1 2.7 21 37-58 29-49 (80)
31 3rkq_A Homeobox protein NKX-2. 20.4 76 0.0026 19.2 2.7 20 37-57 24-43 (58)
32 2da3_A Alpha-fetoprotein enhan 20.4 65 0.0022 21.1 2.5 19 38-57 40-58 (80)
33 2dn0_A Zinc fingers and homeob 20.1 50 0.0017 21.7 1.8 21 37-58 30-50 (76)
No 1
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=46.69 E-value=14 Score=23.63 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q psy414 36 PGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 36 PgpyP~t~eer~aaAkKY~l~~ 57 (176)
=.||| |.+||...|++-||..
T Consensus 27 ~~~yp-~~~~r~~La~~~~L~~ 47 (64)
T 1du6_A 27 SNPYP-SEEAKEELAKKCGITV 47 (64)
T ss_dssp TSCCC-CHHHHHHHHHHHTSCH
T ss_pred cCCCC-CHHHHHHHHHHHCcCH
Confidence 36787 7889999999999864
No 2
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=46.15 E-value=15 Score=23.14 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.||| +.+||...|++-||..
T Consensus 23 ~~yp-~~~~r~~La~~~gl~~ 42 (60)
T 1k61_A 23 NPYL-DTKGLENLMKNTSLSR 42 (60)
T ss_dssp SCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 5787 7788999999999864
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.41 E-value=14 Score=24.17 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
-||| |.+||...|++-||..
T Consensus 32 ~~yp-~~~~r~~La~~~~L~~ 51 (73)
T 1x2n_A 32 HPYP-TEDEKKQIAAQTNLTL 51 (73)
T ss_dssp SCCC-CHHHHHHHHHHHTCCH
T ss_pred CCCC-CHHHHHHHHHHHCcCH
Confidence 5787 8899999999999865
No 4
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=38.21 E-value=21 Score=23.31 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
-||| |.+||...|++-||..
T Consensus 26 ~~yP-~~~~r~~La~~~~L~~ 45 (73)
T 1puf_B 26 NPYP-SEEAKEELAKKCGITV 45 (73)
T ss_dssp SCCC-CHHHHHHHHHHHTSCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 6787 7889999999999865
No 5
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=37.53 E-value=22 Score=24.14 Aligned_cols=20 Identities=35% Similarity=0.428 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
-||| |++||..+|++-||..
T Consensus 32 ~pYP-s~~~r~~LA~~~gLs~ 51 (83)
T 2dmn_A 32 KAYP-SEEEKQMLSEKTNLSL 51 (83)
T ss_dssp TCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCC-CHHHHHHHHHHHCcCH
Confidence 5676 7889999999999864
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=33.80 E-value=27 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.6
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q psy414 36 PGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 36 PgpyP~t~eer~aaAkKY~l~~ 57 (176)
=-+|| |.+||...|++-||..
T Consensus 25 ~~~yp-~~~~r~~La~~~~l~~ 45 (87)
T 1b72_B 25 SNPYP-SEEAKEELAKKCGITV 45 (87)
T ss_dssp TSCCC-CHHHHHHHHHHHTSCH
T ss_pred cCCCC-CHHHHHHHHHHHCcCH
Confidence 36787 8899999999999864
No 7
>2kr6_A Presenilin-1; protease, alternative splicing, alzheimer disease, amyloidos apoptosis, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=32.20 E-value=32 Score=27.65 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCC
Q psy414 126 SVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSP 162 (176)
Q Consensus 126 s~~~~l~~~~g~l~g~~~~~~~l~~~y~~~~Pv~prq 162 (176)
+|...+..|+++++|+.+.+.+|. .++..-|+.|-+
T Consensus 112 d~~t~~ac~vaIL~GL~~TL~lLa-~~~~aLPALPiS 147 (176)
T 2kr6_A 112 DWNTTIACFVAILIGLCLTLLLLA-IFKKALPALPIS 147 (176)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHH-HHTCSCSSSSSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-hhcccCCCCcHH
Confidence 566778888999988777666666 666667777644
No 8
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=32.06 E-value=32 Score=22.41 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHcCCCC
Q psy414 36 PGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 36 PgpyP~t~eer~aaAkKY~l~~ 57 (176)
=-||| |.+||...|++-||..
T Consensus 22 ~~pyp-~~~~r~~La~~~~l~~ 42 (67)
T 3k2a_A 22 THPYP-SEEQKKQLAQDTGLTI 42 (67)
T ss_dssp TSCCC-CHHHHHHHHHHHTCCH
T ss_pred cCCCC-CHHHHHHHHHHhCcCH
Confidence 46787 6788899999999864
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=31.44 E-value=32 Score=23.32 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
-||| |.+||...|++-||..
T Consensus 52 ~~yP-~~~~r~~La~~~gL~~ 71 (87)
T 1mnm_C 52 NPYL-DTKGLENLMKNTSLSR 71 (87)
T ss_dssp SCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 5787 7889999999999864
No 10
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=31.22 E-value=32 Score=21.48 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHHcCCCC
Q psy414 38 ERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 38 pyP~t~eer~aaAkKY~l~~ 57 (176)
+|| +.+||...|++-||..
T Consensus 28 ~yp-~~~~r~~La~~~~l~~ 46 (61)
T 1akh_A 28 QSL-NSKEKEEVAKKCGITP 46 (61)
T ss_dssp SSC-CHHHHHHHHHHHTSCH
T ss_pred CCc-CHHHHHHHHHHHCcCH
Confidence 676 7788999999999864
No 11
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=30.37 E-value=35 Score=21.13 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.+||...|++-||..
T Consensus 19 ~~yp-~~~~r~~LA~~l~l~~ 38 (56)
T 3a03_A 19 QKYL-ASAERAALAKALRMTD 38 (56)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCc-CHHHHHHHHHHhCcCH
Confidence 3576 7788999999999864
No 12
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=26.87 E-value=42 Score=20.93 Aligned_cols=20 Identities=25% Similarity=0.175 Sum_probs=16.2
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.++|...|++-||..
T Consensus 21 ~~yp-~~~~r~~La~~l~l~~ 40 (60)
T 3a02_A 21 THYP-DVFTREELAMKIGLTE 40 (60)
T ss_dssp CSSC-CHHHHHHHHHHHTSCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 4676 6788999999999864
No 13
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=26.44 E-value=44 Score=22.47 Aligned_cols=21 Identities=10% Similarity=-0.084 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.||| |.+||...|++-||...
T Consensus 27 ~~yP-~~~~r~~La~~~gLt~~ 47 (83)
T 1le8_B 27 NPYL-DTKGLENLMKNTSLSRI 47 (83)
T ss_dssp SCCC-CHHHHHHHHHHHCCCHH
T ss_pred CCCc-CHHHHHHHHHHHCCCHH
Confidence 5787 68899999999998653
No 14
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=25.88 E-value=46 Score=21.26 Aligned_cols=20 Identities=25% Similarity=0.114 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.++|...|++-||..
T Consensus 23 ~~yp-~~~~r~~La~~l~l~~ 42 (67)
T 2k40_A 23 NCYP-GIDILEDLAQKLNLEL 42 (67)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCC-CHHHHHHHHHHHCcCH
Confidence 5787 7788999999999865
No 15
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.87 E-value=45 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.+||...|++-||...
T Consensus 29 ~~yp-~~~~r~~LA~~l~l~~~ 49 (70)
T 2dmu_A 29 TKYP-DVGTREQLARKVHLREE 49 (70)
T ss_dssp CSSC-CHHHHHHHHHHHTCCHH
T ss_pred cCCC-CHHHHHHHHHHHCCCHH
Confidence 4676 77889999999998653
No 16
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.66 E-value=82 Score=18.23 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy414 128 WEQLAYMVGILGTISLVLKYFC 149 (176)
Q Consensus 128 ~~~l~~~~g~l~g~~~~~~~l~ 149 (176)
|..++.+.+.+ .|+++.||+-
T Consensus 6 weviaglvall-tflafgfwlf 26 (32)
T 2lx0_A 6 WEVIAGLVALL-TFLAFGFWLF 26 (32)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHH
Confidence 44455555555 6666666654
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=24.46 E-value=50 Score=20.98 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.+||...|++-||..
T Consensus 25 ~~yp-~~~~r~~La~~l~l~~ 44 (66)
T 1bw5_A 25 NPRP-DALMKEQLVEMTGLSP 44 (66)
T ss_dssp CSCC-CHHHHHHHHHHHTSCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 3677 6678999999999864
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=23.78 E-value=57 Score=20.92 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.+||...|++-||..
T Consensus 29 ~~yp-~~~~r~~LA~~l~l~~ 48 (70)
T 2da2_A 29 NAYP-KDDEFEQLSNLLNLPT 48 (70)
T ss_dssp CSSC-CHHHHHHHHHHSCCCH
T ss_pred CCCc-CHHHHHHHHHHhCCCH
Confidence 3576 6788999999999865
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=23.65 E-value=54 Score=20.48 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.+||...|++-||..
T Consensus 25 ~~yp-~~~~r~~La~~l~l~~ 44 (61)
T 2hdd_A 25 NRYL-TERRRQQLSSELGLNE 44 (61)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCC-CHHHHHHHHHHHCcCH
Confidence 4676 6788999999999864
No 20
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=23.37 E-value=55 Score=20.64 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.++|...|++-||..
T Consensus 25 ~~yp-~~~~r~~LA~~l~l~~ 44 (63)
T 2h1k_A 25 NKYI-SRPRRVELAVMLNLTE 44 (63)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred CCCc-CHHHHHHHHHHhCcCH
Confidence 4576 6788999999999865
No 21
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=23.19 E-value=39 Score=24.13 Aligned_cols=12 Identities=42% Similarity=0.529 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHc
Q psy414 42 TEEERRKAAKKY 53 (176)
Q Consensus 42 t~eer~aaAkKY 53 (176)
|++|+..+|++|
T Consensus 4 t~~EK~~IAk~~ 15 (94)
T 1qzm_A 4 TEDEKLNIAKRH 15 (94)
T ss_dssp CHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh
Confidence 788999999887
No 22
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=22.67 E-value=56 Score=21.17 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.++|...|++-||...
T Consensus 24 ~~yp-~~~~r~~LA~~l~l~~~ 44 (72)
T 1uhs_A 24 NKHP-DPTTLCLIAAEAGLTEE 44 (72)
T ss_dssp CSSC-CHHHHHHHHHHHTCCHH
T ss_pred CCCC-CHHHHHHHHHHHCcCHH
Confidence 4576 77889999999998653
No 23
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.51 E-value=58 Score=21.06 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.++|...|++-||...
T Consensus 25 ~~yp-~~~~r~~LA~~l~L~e~ 45 (64)
T 2e19_A 25 NAQP-SAEELSKIADSVNLPLD 45 (64)
T ss_dssp CSSC-CHHHHHHHHHHHTCCHH
T ss_pred CCCc-CHHHHHHHHHHhCcChh
Confidence 4576 67789999999998653
No 24
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=22.34 E-value=60 Score=20.19 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.++|...|++-||..
T Consensus 23 ~~yp-~~~~r~~La~~l~l~~ 42 (60)
T 1jgg_A 23 ENYV-SRPRRCELAAQLNLPE 42 (60)
T ss_dssp CSCC-CHHHHHHHHHHHTSCH
T ss_pred cCCC-CHHHHHHHHHHHCcCH
Confidence 4576 5778999999999864
No 25
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=22.10 E-value=49 Score=21.26 Aligned_cols=20 Identities=25% Similarity=0.286 Sum_probs=16.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.++|...|++-||..
T Consensus 24 ~~yp-~~~~r~~LA~~l~l~~ 43 (68)
T 1ftt_A 24 QKYL-SAPEREHLASMIHLTP 43 (68)
T ss_dssp SSSC-CHHHHHHHHHHHTSCH
T ss_pred CCCC-CHHHHHHHHHHhCCCH
Confidence 3576 6788999999999865
No 26
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.67 E-value=66 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=16.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.+||...|++-||...
T Consensus 29 ~~yp-~~~~r~~LA~~l~l~~~ 49 (70)
T 2cra_A 29 NKFI-TKDKRRKISAATSLSER 49 (70)
T ss_dssp CSSC-CHHHHHHHHHHTCCCHH
T ss_pred cCCC-CHHHHHHHHHHHCCCHH
Confidence 3576 67889999999998653
No 27
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=21.42 E-value=76 Score=19.42 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.+||...|++-||..
T Consensus 22 ~~yp-~~~~r~~La~~l~l~~ 41 (58)
T 1ig7_A 22 KQYL-SIAERAEFSSSLSLTE 41 (58)
T ss_dssp CSCC-CHHHHHHHHHHTTCCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 3565 6678999999999865
No 28
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.36 E-value=67 Score=20.67 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.+||...|++-||...
T Consensus 29 ~~yp-~~~~r~~La~~l~l~~~ 49 (70)
T 2e1o_A 29 QKYL-SPPERKRLAKMLQLSER 49 (70)
T ss_dssp CSSC-CHHHHHHHHHHTTCCHH
T ss_pred CCCc-CHHHHHHHHHHHCCCHH
Confidence 4576 67889999999998653
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=20.61 E-value=69 Score=20.01 Aligned_cols=20 Identities=10% Similarity=-0.002 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.++|...|++-||..
T Consensus 25 ~~yp-~~~~r~~LA~~l~l~~ 44 (62)
T 2vi6_A 25 QKYL-SLQQMQELSSILNLSY 44 (62)
T ss_dssp CSCC-CHHHHHHHHHHHTCCH
T ss_pred CCCC-CHHHHHHHHHHhCCCH
Confidence 3576 6788999999999865
No 30
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.50 E-value=69 Score=21.15 Aligned_cols=21 Identities=29% Similarity=0.175 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.++|..+|++.||...
T Consensus 29 ~~yp-~~~~r~~La~~l~l~~~ 49 (80)
T 2dms_A 29 TRYP-DIFMREEVALKINLPES 49 (80)
T ss_dssp CSSC-CHHHHHHHHHHTTCCHH
T ss_pred cCCC-CHHHHHHHHHHHCcCHH
Confidence 4576 77889999999998754
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=20.42 E-value=76 Score=19.21 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.+||..+|++-||..
T Consensus 24 ~~yp-~~~~r~~La~~l~l~~ 43 (58)
T 3rkq_A 24 QRYL-SAPERDQLASVLKLTS 43 (58)
T ss_dssp CSSC-CHHHHHHHHHHHTCCH
T ss_pred cCCC-CHHHHHHHHHHhCcCH
Confidence 4676 5678889999999864
No 32
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.36 E-value=65 Score=21.09 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHHcCCCC
Q psy414 38 ERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 38 pyP~t~eer~aaAkKY~l~~ 57 (176)
+|| +.+||..+|++-||..
T Consensus 40 ~yp-~~~~r~~La~~l~l~~ 58 (80)
T 2da3_A 40 SNP-TRKMLDHIAHEVGLKK 58 (80)
T ss_dssp SSC-CHHHHHHHHHHHTSCH
T ss_pred CCC-CHHHHHHHHHHHCcCH
Confidence 576 6788999999999865
No 33
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.12 E-value=50 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.+||...|++-||...
T Consensus 30 ~~yp-~~~~r~~La~~~~l~~~ 50 (76)
T 2dn0_A 30 NQFP-GQSEVEHLTKVTGLSTR 50 (76)
T ss_dssp SSSC-CSHHHHHHHHHHCCCHH
T ss_pred CCCc-CHHHHHHHHHHhCCChH
Confidence 3576 55778899999998753
Done!