Query psy414
Match_columns 176
No_of_seqs 120 out of 145
Neff 4.8
Searched_HMMs 13730
Date Fri Aug 16 17:56:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy414.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/414hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k61a_ a.4.1.1 (A:) mat alpha 56.4 3.1 0.00023 25.6 2.3 20 37-57 23-42 (60)
2 d1le8a_ a.4.1.1 (A:) Mating ty 51.7 4.3 0.00031 24.3 2.3 21 37-58 19-39 (53)
3 d1x2na1 a.4.1.1 (A:6-67) Homeo 47.3 4.5 0.00033 25.0 1.9 21 37-58 27-47 (62)
4 d1jgga_ a.4.1.1 (A:) Even-skip 45.6 5.6 0.00041 24.1 2.2 21 37-58 21-41 (57)
5 d1x2ma1 a.4.1.1 (A:8-59) Lag1 40.6 8.1 0.00059 23.0 2.3 20 37-57 16-35 (52)
6 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 38.7 8.2 0.0006 24.3 2.2 22 35-57 24-45 (73)
7 d1fjla_ a.4.1.1 (A:) Paired pr 35.5 8.4 0.00061 23.9 1.8 21 37-58 24-44 (65)
8 d1wi3a_ a.4.1.1 (A:) DNA-bindi 28.9 17 0.0013 22.5 2.5 20 37-57 30-49 (71)
9 d1lfba_ a.4.1.1 (A:) Hepatocyt 27.0 12 0.00088 24.1 1.5 19 36-55 18-36 (78)
10 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 24.9 16 0.0012 23.4 1.8 20 38-58 44-63 (80)
No 1
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.45 E-value=3.1 Score=25.57 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=16.5
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
-||| |++||...|++-||.+
T Consensus 23 ~pyP-s~~e~~~La~~~gL~~ 42 (60)
T d1k61a_ 23 NPYL-DTKGLENLMKNTSLSR 42 (60)
T ss_dssp SCCC-CHHHHHHHHHHHCCCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 4665 7899999999999875
No 2
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=51.73 E-value=4.3 Score=24.32 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.+||...|++-||.+.
T Consensus 19 ~~~P-~~~~~~~LA~~lgl~~~ 39 (53)
T d1le8a_ 19 KQSL-NSKEKEEVAKKCGITPL 39 (53)
T ss_dssp CSCC-CHHHHHHHHHHTTSCHH
T ss_pred CCCC-CHHHHHHHHHHHCCCHH
Confidence 3677 88999999999998753
No 3
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.25 E-value=4.5 Score=25.05 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=16.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
-||| |.+|+...|++.||...
T Consensus 27 nPyP-s~~e~~~La~~~~l~~~ 47 (62)
T d1x2na1 27 HPYP-TEDEKKQIAAQTNLTLL 47 (62)
T ss_dssp SCCC-CHHHHHHHHHHHTCCHH
T ss_pred CCCc-CHHHHHHHHHHHCcCHH
Confidence 4675 67899999999998653
No 4
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=45.58 E-value=5.6 Score=24.10 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=17.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| +.++|..+|++-||.+.
T Consensus 21 ~~yp-~~~~r~~LA~~lgl~~~ 41 (57)
T d1jgga_ 21 ENYV-SRPRRCELAAQLNLPES 41 (57)
T ss_dssp CSCC-CHHHHHHHHHHHTSCHH
T ss_pred CCCC-CHHHHHHHHHHhCCChh
Confidence 4676 88999999999998753
No 5
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.58 E-value=8.1 Score=23.03 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=16.6
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.++|...|++-||..
T Consensus 16 ~~~P-~~~~~~~LA~~~~ls~ 35 (52)
T d1x2ma1 16 TKHP-DEKRLEGLSKQLDWDV 35 (52)
T ss_dssp CSSC-CHHHHHHHHHHHCSCH
T ss_pred CCCc-CHHHHHHHHHHHCcCH
Confidence 4676 6899999999999865
No 6
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.71 E-value=8.2 Score=24.33 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=17.3
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCC
Q psy414 35 LPGERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 35 ~PgpyP~t~eer~aaAkKY~l~~ 57 (176)
.--||| |++||+..|++-||..
T Consensus 24 ~~~pYP-s~~~k~~La~~~gl~~ 45 (73)
T d1pufb_ 24 LSNPYP-SEEAKEELAKKCGITV 45 (73)
T ss_dssp TTSCCC-CHHHHHHHHHHHTSCH
T ss_pred cCCCCC-CHHHHHHHHHHHCcCH
Confidence 346786 6788999999999864
No 7
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=35.51 E-value=8.4 Score=23.87 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~e 58 (176)
.+|| |.+||...|++-||...
T Consensus 24 n~yP-s~~~r~~LA~~lgl~~~ 44 (65)
T d1fjla_ 24 TQYP-DIYTREELAQRTNLTEA 44 (65)
T ss_dssp CSSC-CHHHHHHHHHHHTCCHH
T ss_pred cCCC-ChHHHHHHHHHhCCCHH
Confidence 4677 77899999999998653
No 8
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.92 E-value=17 Score=22.54 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=15.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCC
Q psy414 37 GERPKTEEERRKAAKKYNLLP 57 (176)
Q Consensus 37 gpyP~t~eer~aaAkKY~l~~ 57 (176)
.+|| +.+||...|++-||.+
T Consensus 30 ~~~P-~~~~~~~La~~lgl~~ 49 (71)
T d1wi3a_ 30 GLYP-DQEAIHTLSAQLDLPK 49 (71)
T ss_dssp CSCC-CHHHHHHHHHHSCCCH
T ss_pred cCCC-CHHHHHHHHHHhCCCH
Confidence 3566 5788999999999875
No 9
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=27.03 E-value=12 Score=24.14 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.1
Q ss_pred CCCCCCCHHHHHHHHHHcCC
Q psy414 36 PGERPKTEEERRKAAKKYNL 55 (176)
Q Consensus 36 PgpyP~t~eer~aaAkKY~l 55 (176)
=.+|| |.++|.++|++-|+
T Consensus 18 ~n~yP-s~~~Re~LA~~ln~ 36 (78)
T d1lfba_ 18 RQKNP-SKEERETLVEECNR 36 (78)
T ss_dssp TCSSC-CHHHHHHHHHHHHH
T ss_pred hCCCC-CHHHHHHHHHHhch
Confidence 35888 89999999999974
No 10
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.92 E-value=16 Score=23.40 Aligned_cols=20 Identities=0% Similarity=0.034 Sum_probs=16.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCC
Q psy414 38 ERPKTEEERRKAAKKYNLLPE 58 (176)
Q Consensus 38 pyP~t~eer~aaAkKY~l~~e 58 (176)
+|| +.+|++.+|++-||.+.
T Consensus 44 ~~p-~~~~~~~la~~~gl~~~ 63 (80)
T d1wh7a_ 44 QKH-DDVAVEQFCAETGVRRQ 63 (80)
T ss_dssp CSS-TTHHHHHHHHHSCCCHH
T ss_pred cCc-CHHHHHHHHHHHCCCHH
Confidence 566 66999999999998753
Done!