RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy414
         (176 letters)



>gnl|CDD|218766 pfam05821, NDUF_B8, NADH-ubiquinone oxidoreductase ASHI subunit
           (CI-ASHI or NDUFB8).  This family consists of several
           eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit
           (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase
           (complex I) is an extremely complicated multiprotein
           complex located in the inner mitochondrial membrane. Its
           main function is the transport of electrons from NADH to
           ubiquinone, which is accompanied by translocation of
           protons from the mitochondrial matrix to the
           intermembrane space. Human complex I appears to consist
           of 41 subunits.
          Length = 179

 Score =  106 bits (267), Expect = 1e-29
 Identities = 47/90 (52%), Positives = 58/90 (64%)

Query: 18  SLQQNSVRTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLP 77
           ++     R A  +  D+ PG  PKTEEER  AAKKYNL PE+Y+  PDDG   GDYP LP
Sbjct: 15  AVAPRGARAASGWNKDYKPGPYPKTEEERAAAAKKYNLRPEDYQPYPDDGLGYGDYPKLP 74

Query: 78  HTHYDSRDPFYPWDYPMFRTNYGEPLPNDF 107
               + RDP+YPWD+P  R N+GEP+  DF
Sbjct: 75  DRSVEERDPYYPWDHPELRRNWGEPIHADF 104


>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
          Length = 881

 Score = 29.7 bits (67), Expect = 0.83
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 61  EVQPDDGF---ATGDYPHLPHTHYDS-RDPFYPWDYP 93
           EV  +DGF       Y     THYDS  D FY +D  
Sbjct: 114 EVTAEDGFPDPEEAKYEIDAITHYDSIDDRFYVFDLG 150


>gnl|CDD|240411 PTZ00419, PTZ00419, valyl-tRNA synthetase-like protein;
           Provisional.
          Length = 995

 Score = 28.0 bits (63), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 43  EEERRKAAKKYNLLPEEYEVQPD 65
           EE   KA KK+ L  E++E++ D
Sbjct: 484 EEALEKAKKKFGLSEEDFELEQD 506


>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
           Provisional.
          Length = 475

 Score = 28.0 bits (63), Expect = 3.4
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 9/35 (25%)

Query: 67  GFATGDYPHLP-HTHYDSRDP------FYPWDYPM 94
           G A G+Y  L  HT    RDP        PW+YP+
Sbjct: 120 GKAAGEY--LEGHTSMIRRDPVGVVASIAPWNYPL 152


>gnl|CDD|236784 PRK10876, recB, exonuclease V subunit beta; Provisional.
          Length = 1181

 Score = 27.2 bits (61), Expect = 4.9
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 4/21 (19%)

Query: 136  GIL-GTISLVLKYFCWEKRYY 155
            G+L G I LV   F W+ RYY
Sbjct: 1060 GMLKGFIDLV---FRWQGRYY 1077


>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
          Length = 701

 Score = 26.9 bits (59), Expect = 6.4
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)

Query: 37  GERPKTEE------ERRKAAKKYNLLPEEYEVQ 63
           GE PK EE       ++K  KK   + +EYEVQ
Sbjct: 230 GEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQ 262


>gnl|CDD|151671 pfam11229, DUF3028, Protein of unknown function (DUF3028).  This
           eukaryotic family of proteins has no known function.
          Length = 589

 Score = 26.9 bits (59), Expect = 6.5
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 13/69 (18%)

Query: 4   LRVLSQVKSLGKVLSLQQNSVRTAFVYTPDWLPGE----RPKTEEERRKAAKKYNLLPEE 59
           +R L+QV S+  V+ LQ N++         WL G        + + R      Y+ LPE 
Sbjct: 99  IRTLTQVISVSGVIGLQSNAI---------WLLGHLHLSTLSSNQSRTSVPTDYSYLPEG 149

Query: 60  YEVQPDDGF 68
             ++   GF
Sbjct: 150 SFIRAAIGF 158


>gnl|CDD|147004 pfam04633, Herpes_BMRF2, Herpesvirus BMRF2 protein. 
          Length = 349

 Score = 26.9 bits (60), Expect = 6.6
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 120 PVNQRISVWEQLAYMVGI-LGTISLVLKYFCWEKRYYYP 157
           P    +S + +L   V I L  +  +L  + W      P
Sbjct: 62  PAKHGLSRYLELICAVNIFLAFVCFLLSQYTWSTSVVVP 100


>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
          Length = 490

 Score = 26.7 bits (59), Expect = 8.0
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 75  HLPHTHYDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYM 134
           HL  + YD    F PW +       G    +    +++ M F   P   R+    +LA +
Sbjct: 392 HLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNF-MPFGGGP---RLCAGSELAKL 447

Query: 135 VGILGTISLVLKYFCWE-----KRYYYPKFDSPK 163
              +    LVL  F WE     + + +P  D PK
Sbjct: 448 EMAVFIHHLVLN-FNWELAEADQAFAFPFVDFPK 480


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0776    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,393,921
Number of extensions: 862736
Number of successful extensions: 912
Number of sequences better than 10.0: 1
Number of HSP's gapped: 912
Number of HSP's successfully gapped: 19
Length of query: 176
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 86
Effective length of database: 6,945,742
Effective search space: 597333812
Effective search space used: 597333812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)