RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy414
         (176 letters)



>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of
          HMG-CoA reductase {Pseudomonas mevalonii [TaxId:
          32044]}
          Length = 266

 Score = 26.9 bits (59), Expect = 1.4
 Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 35 LPGERPKTEEERRKA-AKKYNLLPEEYEVQPDDGF 68
          LP  R  +   R     +   L  ++  +  + G 
Sbjct: 5  LPAFRNLSPAARLDHIGQLLGLSHDDVSLLANAGA 39


>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
           {Thermus thermophilus [TaxId: 274]}
          Length = 231

 Score = 25.2 bits (54), Expect = 4.9
 Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 3/60 (5%)

Query: 81  YDSRDPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRIS---VWEQLAYMVGI 137
                  +    P+ R                G     + +  R+S   V  +   ++G+
Sbjct: 149 LLLDKSLFRKALPLARRVVALRKRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGV 208


>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649
           {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 439

 Score = 24.9 bits (53), Expect = 6.6
 Identities = 13/101 (12%), Positives = 21/101 (20%), Gaps = 1/101 (0%)

Query: 25  RTAFVYTPDWLPGERPKTEEERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSR 84
           R   + T      E     +    + +            P   +  G  P L        
Sbjct: 64  RYGSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSR-YYKGGKPDLKLYDAKFA 122

Query: 85  DPFYPWDYPMFRTNYGEPLPNDFAISHYGMGFNEQPVNQRI 125
                    M +    E L  D  I   G  + +       
Sbjct: 123 SLNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYR 163


>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia
           coronaria) [TaxId: 52861]}
          Length = 208

 Score = 24.6 bits (52), Expect = 7.6
 Identities = 17/133 (12%), Positives = 24/133 (18%)

Query: 44  EERRKAAKKYNLLPEEYEVQPDDGFATGDYPHLPHTHYDSRDPFYPWDYPMFRTNYGEPL 103
           E   +      +   E E+   D    G         Y         D            
Sbjct: 35  ESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQG 94

Query: 104 PNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILGTISLVLKYFCWEKRYYYPKFDSPK 163
           P   A     +              +Q   +      I      F       +      K
Sbjct: 95  PCQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTK 154

Query: 164 YQKGVVHYGYHQK 176
              GV   GY   
Sbjct: 155 LNHGVTIVGYQAN 167


>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS)
           {Escherichia coli, gene lysU [TaxId: 562]}
          Length = 143

 Score = 23.8 bits (51), Expect = 9.0
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 100 GEPLPNDFAISHYGMGFNEQPVNQRISVWEQLAYMVGILG 139
           G   PNDF   H     +E+   +     E L   V + G
Sbjct: 22  GVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAG 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0435    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 744,829
Number of extensions: 36044
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 13
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)