BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4141
(353 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05A36|MEX3C_MOUSE RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Mus musculus
GN=Mex3c PE=2 SV=2
Length = 652
Score = 235 bits (599), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 155/312 (49%), Positives = 198/312 (63%), Gaps = 37/312 (11%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ R GCKIKALRAKTNTYIKTPVRGEEP+FVVTGRKEDVA AKREILSAA+HFS +RASR
Sbjct: 241 VGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASR 300
Query: 64 -KSG-ALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK 121
K+G AL LS +PG T++VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDK
Sbjct: 301 NKNGPALGGLSCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 360
Query: 122 EPVFEVTGAPDSVEIARQEIESHIIRRTGSCVTPAEAVLNGDDNSADLLASLCNSGLGSL 181
EPVFEVTG P++V+ AR+EIE HI RTG+ + LN +++
Sbjct: 361 EPVFEVTGMPENVDRAREEIEMHIAMRTGNYIE-----LNEEND------------FHYN 403
Query: 182 GTILNYVNGTSGPASDSYGAGPGEFNFNMPLSSSQMNHHVFSGSSGCSSASSSS--SSSA 239
GT +++ GT G A S P P + M+++ SS S S+ S S+
Sbjct: 404 GTDVSFEGGTLGSAWLSSNPVP-------PSRARMMSNYRNDSSSSLGSGSTDSYFGSNR 456
Query: 240 CAPHSSTQ-LDLGSIWSG--MSSLDKDEGLGDSPSFDASPVNPSSIWS-YPPVSSTS--- 292
A S T G+ W G + S+ ++ DSP+FD+ P + +IW+ + PV+ S
Sbjct: 457 LADFSPTSPFSTGNFWFGDTLPSVGSEDLTVDSPAFDSLPTSAQTIWTPFEPVNPLSGFG 516
Query: 293 --PSGSISGSRQ 302
PSG++ R+
Sbjct: 517 SDPSGNMKTQRR 528
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT--CPMCRVPVNQAMRIIS 353
C +C + EV AL+PCGHN FC ECA + C+ RT CP+C+ V QA++I S
Sbjct: 601 CVICFENEVIAALVPCGHNLFCMECANKICE-KRTPSCPVCQTAVTQAIQIHS 652
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 92 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIES 143
V +VG +G IK ++ +TNTYI TP R +EP+F VTG + V +A++EI S
Sbjct: 237 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILS 288
>sp|Q5U5Q3|MEX3C_HUMAN RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens
GN=MEX3C PE=1 SV=3
Length = 659
Score = 234 bits (598), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/309 (48%), Positives = 194/309 (62%), Gaps = 31/309 (10%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ R GCKIKALRAKTNTYIKTPVRGEEP+FVVTGRKEDVA AKREILSAA+HFS +RASR
Sbjct: 248 VGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILSAAEHFSMIRASR 307
Query: 64 -KSG-ALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK 121
K+G AL LS +PG T++VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDK
Sbjct: 308 NKNGPALGGLSCSPNLPGQTTVQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 367
Query: 122 EPVFEVTGAPDSVEIARQEIESHIIRRTGSCVTPAEAVLNGDDNSADLLASLCNSGLGSL 181
EPVFEVTG P++V+ AR+EIE HI RTG+ + LN ++N + + G+L
Sbjct: 368 EPVFEVTGMPENVDRAREEIEMHIAMRTGNYIE-----LN-EENDFHYNGTDVSFEGGTL 421
Query: 182 GTILNYVNGTSGPASDSYGAGPGEFNFNMPLSSSQMNHHVFSGSSGCSSASSSSSSSACA 241
G+ +S P S + + S + + GS+ + S +S S
Sbjct: 422 GSAWL----SSNPVPPSRARMISNYRNDSSSSLGSGSTDSYFGSNRLADFSPTSPFST-- 475
Query: 242 PHSSTQLDLGSIWSG--MSSLDKDEGLGDSPSFDASPVNPSSIWS-YPPVSSTS-----P 293
G+ W G + S+ ++ DSP+FD+ P + +IW+ + PV+ S P
Sbjct: 476 ---------GNFWFGDTLPSVGSEDLAVDSPAFDSLPTSAQTIWTPFEPVNPLSGFGSDP 526
Query: 294 SGSISGSRQ 302
SG++ R+
Sbjct: 527 SGNMKTQRR 535
Score = 61.6 bits (148), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT--CPMCRVPVNQAMRIIS 353
C +C + EV AL+PCGHN FC ECA + C+ RT CP+C+ V QA++I S
Sbjct: 608 CVICFENEVIAALVPCGHNLFCMECANKICE-KRTPSCPVCQTAVTQAIQIHS 659
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 92 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIES 143
V +VG +G IK ++ +TNTYI TP R +EP+F VTG + V +A++EI S
Sbjct: 244 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPIFVVTGRKEDVAMAKREILS 295
>sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis GN=mex3b PE=2 SV=1
Length = 507
Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/222 (58%), Positives = 154/222 (69%), Gaps = 14/222 (6%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ R GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAA+HFS +RASR
Sbjct: 75 VGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVALARREIISAAEHFSMIRASR 134
Query: 64 KSGALS----PLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR 119
A + + P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSR
Sbjct: 135 NKNAAALNGGSVPAPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSR 194
Query: 120 DKEPVFEVTGAPDSVEIARQEIESHIIRRTGSCVTPAEAV---LNGDDNSADLLASLC-- 174
DKEPVFEVTG P++V+ AR+EIE+HI RTG + A+ NG D DL SL
Sbjct: 195 DKEPVFEVTGMPENVDRAREEIEAHIAVRTGGLIEVADENDFHANGTDVGFDLHGSLWSK 254
Query: 175 -NSGLGSLGTILNYVNG----TSGPASDSYGAGPGEFNFNMP 211
N GS + NY N ++DSY G +++ P
Sbjct: 255 SNQSSGSRKALSNYRNDSSSSLGSASTDSYFGGTRMADYSPP 296
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 299 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDR-TCPMCRVPVNQAMRIIS 353
GSR+C +C + EV AL+PCGHN FC ECA R C+ ++ CP+C V QA+RI S
Sbjct: 452 GSRECSICFESEVIAALVPCGHNLFCMECANRICEKNQPQCPVCHAGVTQAIRIFS 507
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 46 KREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPY-KVVGLVVGPKGATIK 104
+R + A D S L A+ + P ++T V+VP + V +VG +G IK
Sbjct: 25 QRALQIALDQLSLLGLDNDESAMYD-NEPRKKSINMTECVQVPSSEHVAEIVGRQGCKIK 83
Query: 105 RIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEI 141
++ +TNTYI TP R +EPVF VTG + V +AR+EI
Sbjct: 84 ALRAKTNTYIKTPVRGEEPVFVVTGRKEDVALARREI 120
>sp|Q6ZN04|MEX3B_HUMAN RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1
Length = 569
Score = 227 bits (579), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 119/171 (69%), Positives = 137/171 (80%), Gaps = 5/171 (2%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ R GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAA+HFS +RASR
Sbjct: 82 VGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASR 141
Query: 64 -KSGALSPLSP-PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK 121
K+ AL+ P P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDK
Sbjct: 142 NKNTALNGAVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDK 201
Query: 122 EPVFEVTGAPDSVEIARQEIESHIIRRTGSCVTPAEA---VLNGDDNSADL 169
EPVFEVTG P++V+ AR+EIE+HI RTG + + NG D DL
Sbjct: 202 EPVFEVTGMPENVDRAREEIEAHIALRTGGIIELTDENDFHANGTDVGFDL 252
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 299 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQAMRIIS 353
GSR C +C + EV AL+PCGHN FC ECA R C+ + CP+C V QA+RI S
Sbjct: 514 GSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIFS 569
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 46 KREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPY-KVVGLVVGPKGATIK 104
+R + A D S L GA S P ++T V VP + V +VG +G IK
Sbjct: 31 QRALQLALDQLSLLGLDSDEGASLYDSEPRKKSVNMTECVPVPSSEHVAEIVGRQGCKIK 90
Query: 105 RIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIES 143
++ +TNTYI TP R +EPVF VTG + V +AR+EI S
Sbjct: 91 ALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIIS 129
>sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens GN=MEX3A PE=1 SV=1
Length = 520
Score = 225 bits (574), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/169 (68%), Positives = 136/169 (80%), Gaps = 11/169 (6%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ R GCKIKALRAKTNTYIKTPVRGEEPVF+VTGR+EDVA A+REI+SAA+HFS +RASR
Sbjct: 148 VGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREIISAAEHFSMIRASR 207
Query: 64 -KSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKE 122
KSGA ++P +PG VTI VRVPY+VVGLVVGPKGATIKRIQ QTNTYI+TPSRD++
Sbjct: 208 NKSGAAFGVAP--ALPGQVTIRVRVPYRVVGLVVGPKGATIKRIQQQTNTYIITPSRDRD 265
Query: 123 PVFEVTGAPDSVEIARQEIESHIIRRTGSCVTPAEAVLNGDDNSADLLA 171
PVFE+TGAP +VE AR+EIE+HI RTG + +N D LA
Sbjct: 266 PVFEITGAPGNVERAREEIETHIAVRTGKILE--------YNNENDFLA 306
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCD-FDRTCPMCRVPVNQAMRIIS 353
C +C + EVT AL+PCGHN FC ECA R C+ D CP+C + QA+RI S
Sbjct: 469 CMVCFESEVTAALVPCGHNLFCMECAVRICERTDPECPVCHITATQAIRIFS 520
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 92 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEI 141
V +VG +G IK ++ +TNTYI TP R +EPVF VTG + V AR+EI
Sbjct: 144 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFMVTGRREDVATARREI 193
>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus GN=Mex3b PE=2 SV=2
Length = 601
Score = 224 bits (570), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 118/167 (70%), Positives = 135/167 (80%), Gaps = 5/167 (2%)
Query: 8 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR-KSG 66
GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVA A+REI+SAA+HFS +RASR K+
Sbjct: 118 GCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNT 177
Query: 67 ALSPLSP-PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVF 125
AL+ P P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ QT+TYIVTPSRDKEPVF
Sbjct: 178 ALNGAVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVF 237
Query: 126 EVTGAPDSVEIARQEIESHIIRRTGSCVTPAEA---VLNGDDNSADL 169
EVTG P++V+ AR+EIE+HI RTG + + NG D DL
Sbjct: 238 EVTGMPENVDRAREEIEAHIALRTGGIIELTDENDFHANGTDVGFDL 284
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 299 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQAMRIIS 353
GSR C +C + EV AL+PCGHN FC ECA R C+ + CP+C V QA+RI S
Sbjct: 546 GSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRIFS 601
>sp|Q86XN8|MEX3D_HUMAN RNA-binding protein MEX3D OS=Homo sapiens GN=MEX3D PE=1 SV=3
Length = 651
Score = 221 bits (563), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 115/174 (66%), Positives = 136/174 (78%), Gaps = 5/174 (2%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ R GCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV AKREILSAA+HFS +RA+R
Sbjct: 195 VGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATR 254
Query: 64 -KSGALSPLSP-PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK 121
K+G L + P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ +T+TYIVTP RDK
Sbjct: 255 SKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK 314
Query: 122 EPVFEVTGAPDSVEIARQEIESHIIRRTGSCVTP---AEAVLNGDDNSADLLAS 172
EPVF VTG P++V+ AR+EIE+HI RTG+ ++ NG D DLL +
Sbjct: 315 EPVFAVTGMPENVDRAREEIEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGA 368
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 286 PPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTC-DFDRTCPMCRVP 344
PP +S++P+ + R+C +C + EV AL+PCGHN FC +CA R C + CP CR P
Sbjct: 587 PPSASSAPALA----RECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTP 642
Query: 345 VNQAMRIIS 353
QA+ I S
Sbjct: 643 ATQAIHIFS 651
Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 92 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIES-----HII 146
V +VG +G IK ++ +TNTYI TP R +EPVF VTG + VE+A++EI S II
Sbjct: 191 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSII 250
Query: 147 RRT 149
R T
Sbjct: 251 RAT 253
>sp|Q3UE17|MEX3D_MOUSE RNA-binding protein MEX3D OS=Mus musculus GN=Mex3d PE=2 SV=2
Length = 643
Score = 219 bits (559), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/174 (66%), Positives = 137/174 (78%), Gaps = 6/174 (3%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ R GCKIKALRAKTNTYIKTPVRGEEPVF+VTGRKEDV AKREILSA +HFS +RA+R
Sbjct: 176 VGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSA-EHFSLIRATR 234
Query: 64 -KSGALSPLSP-PTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK 121
K+G LS +P P +PG TI+VRVPY+VVGLVVGPKGATIKRIQ +T+TYIVTP RDK
Sbjct: 235 SKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK 294
Query: 122 EPVFEVTGAPDSVEIARQEIESHIIRRTGSCV---TPAEAVLNGDDNSADLLAS 172
EPVF VTG P++V+ AR+EIE+HI RTG+ ++ NG D DLL +
Sbjct: 295 EPVFAVTGMPENVDRAREEIEAHITLRTGAFTDSGPDSDFHANGTDVCLDLLGA 348
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 300 SRQCYLCNDREVTHALIPCGHNFFCSECAERTC-DFDRTCPMCRVPVNQAMRIIS 353
+R+C +C++ E AL+PCGHN FC +CA R C + CP CR P QA+ I S
Sbjct: 589 ARECVVCSEGEAMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHIFS 643
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 92 VGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIES----HIIR 147
V +VG +G IK ++ +TNTYI TP R +EPVF VTG + VE+A++EI S +IR
Sbjct: 172 VAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAEHFSLIR 231
Query: 148 RT 149
T
Sbjct: 232 AT 233
>sp|Q8JHV9|BIR7A_XENLA Baculoviral IAP repeat-containing protein 7-A OS=Xenopus laevis
GN=birc7-a PE=1 SV=1
Length = 401
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 284 SYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRV 343
S PP+S+ + R C +C D++V+ +PCGH C+ECA R CP+CR
Sbjct: 335 SAPPLSTEEQLRRLKEERMCKVCMDKDVSMLFVPCGHLVVCTECAPNL----RHCPICRA 390
Query: 344 PVNQAMRII 352
+ ++R
Sbjct: 391 AIRGSVRAF 399
>sp|A9ULZ2|BIR7B_XENLA Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis
GN=birc7-b PE=2 SV=2
Length = 345
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 286 PPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345
PP+S+ + R C +C D++V+ +PCGH C+ECA R CP+CR +
Sbjct: 281 PPLSTEEQLQRLKEERMCKVCMDKDVSMLFVPCGHLVVCTECAPNL----RHCPICRAAI 336
Query: 346 NQAMRII 352
++R
Sbjct: 337 RGSVRAF 343
>sp|A2AWP0|BIRC7_MOUSE Baculoviral IAP repeat-containing protein 7 OS=Mus musculus
GN=Birc7 PE=2 SV=1
Length = 285
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352
+ R+C +C DR V+ +PCGH F C+ECA + CP+CRVP+ +R
Sbjct: 232 QLQEERRCKVCLDRAVSIVFVPCGH-FVCTECAPNL----QLCPICRVPICSCVRTF 283
>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2
Length = 438
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 287 PVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 346
P +++S S SI + C +C E A +PCGH C++CA CP+CR P
Sbjct: 375 PSTNSSGSTSIPEEKLCKICYGAEYNTAFLPCGHVVACAKCASSVTK----CPLCRKPFT 430
Query: 347 QAMRI 351
MR+
Sbjct: 431 DVMRV 435
>sp|Q62210|BIRC2_MOUSE Baculoviral IAP repeat-containing protein 2 OS=Mus musculus
GN=Birc2 PE=1 SV=1
Length = 612
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 350
+ R C +C DREV+ IPCGH C ECA R CP+CR + +R
Sbjct: 559 LQEERTCKVCMDREVSIVFIPCGHLVVCQECAPSL----RKCPICRGTIKGTVR 608
>sp|Q95M71|BIRC8_GORGO Baculoviral IAP repeat-containing protein 8 OS=Gorilla gorilla
gorilla GN=BIRC8 PE=2 SV=1
Length = 236
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 288 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
+S P + + C +C DR + IPCGH C +CAE DR CPMC ++
Sbjct: 174 ISPEEPLRRLQEEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV---DR-CPMCNAVIDF 229
Query: 348 AMRII 352
R+
Sbjct: 230 KQRVF 234
>sp|Q95M72|BIRC8_PANTR Baculoviral IAP repeat-containing protein 8 OS=Pan troglodytes
GN=BIRC8 PE=2 SV=1
Length = 236
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 288 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
+S P + + C +C DR + IPCGH C +CAE DR CPMC ++
Sbjct: 174 ISPEEPLRRLQDEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV---DR-CPMCSAVIDF 229
Query: 348 AMRII 352
R+
Sbjct: 230 KQRVF 234
>sp|Q96P09|BIRC8_HUMAN Baculoviral IAP repeat-containing protein 8 OS=Homo sapiens
GN=BIRC8 PE=1 SV=2
Length = 236
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 288 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
+S P + + C +C DR + IPCGH C +CAE DR CPMC ++
Sbjct: 174 ISPEEPLRRLQEEKLCKICMDRHIAVVFIPCGHLVTCKQCAEAV---DR-CPMCSAVIDF 229
Query: 348 AMRII 352
R+
Sbjct: 230 KQRVF 234
>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus
GN=Birc3 PE=1 SV=2
Length = 600
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352
+ R C +C DREV+ IPCGH C +CA R CP+CR + +R
Sbjct: 547 LQEERMCKVCMDREVSIVFIPCGHLVVCKDCAPSL----RKCPICRGTIKGTVRTF 598
>sp|Q90660|BIR_CHICK Inhibitor of apoptosis protein OS=Gallus gallus GN=ITA PE=2 SV=1
Length = 611
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 350
+ R C +C D+EV+ IPCGH C ECA R CP+CR + +R
Sbjct: 558 LQEERTCKVCMDKEVSIVFIPCGHLVVCKECAPSL----RKCPICRGTIKGTVR 607
>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 OS=Homo sapiens
GN=BIRC2 PE=1 SV=2
Length = 618
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 350
+ R C +C D+EV+ IPCGH C ECA R CP+CR + +R
Sbjct: 565 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVR 614
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 351
+G ++C +C A++PC H CS+CAE CP+CR P+++ ++I
Sbjct: 316 TGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKI 369
>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens
GN=BIRC3 PE=1 SV=2
Length = 604
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 350
+ R C +C D+EV+ IPCGH C +CA R CP+CR + +R
Sbjct: 551 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRSTIKGTVR 600
>sp|A9JTP3|BIRC7_XENTR Baculoviral IAP repeat-containing protein 7 OS=Xenopus tropicalis
GN=birc7 PE=2 SV=1
Length = 365
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352
+ R C +C D +V+ +PCGH C+ECA R CP+CR + ++R
Sbjct: 311 QLKEERMCKVCMDNDVSMVFVPCGHLVVCTECAPNL----RHCPICRAAIRGSVRAF 363
>sp|A1E2V0|BIRC3_CANFA Baculoviral IAP repeat-containing protein 3 OS=Canis familiaris
GN=BIRC3 PE=2 SV=1
Length = 604
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 350
+ R C +C D+EV+ IPCGH C +CA R CP+CR V +R
Sbjct: 551 LQEERTCKVCMDKEVSIVFIPCGHLVVCRDCAPSL----RKCPICRGTVRGTVR 600
>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp.
japonica GN=XBOS34 PE=2 SV=1
Length = 513
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIS 353
C +C D V A IPCGH C C + CP+CR +NQ +R+ +
Sbjct: 462 CVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYA 512
>sp|Q96CA5|BIRC7_HUMAN Baculoviral IAP repeat-containing protein 7 OS=Homo sapiens
GN=BIRC7 PE=1 SV=2
Length = 298
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352
+ R C +C DR V+ +PCGH C+ECA + CP+CR PV +R
Sbjct: 246 LQEERTCKVCLDRAVSIVFVPCGH-LVCAECAPGL----QLCPICRAPVRSRVRTF 296
>sp|O62640|PIAP_PIG Putative inhibitor of apoptosis OS=Sus scrofa GN=PIAP PE=2 SV=1
Length = 358
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 350
+ R C +C D+EV+ IPCGH C +CA R CP+CR + +R
Sbjct: 305 LQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSL----RKCPICRGTIKGTVR 354
>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana
GN=XBAT35 PE=2 SV=1
Length = 462
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 263 DEGLGDSPSFDASPVNPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNF 322
D+G PS D++PV+ S S P S+ + C +C D +PCGH
Sbjct: 372 DDGPIHYPSIDSTPVDLPSAASLP-ASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVA 430
Query: 323 FCSECAERTCDFDRTCPMCRVPVNQAMRI 351
C C + + CP+CR ++Q +++
Sbjct: 431 GCMSCLKEIKSKNWGCPVCRAKIDQVIKL 459
>sp|Q5M870|NEUL3_RAT E3 ubiquitin-protein ligase NEURL3 OS=Rattus norvegicus GN=Neurl3
PE=2 SV=1
Length = 254
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 293 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
P ++ +C +C L+PCGH+ FC CA CPMCR + +
Sbjct: 187 PESEVTSGEECVICFHNTANTRLMPCGHSQFCGSCAWHIFKDTARCPMCRWQIEE 241
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 289 SSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT-CPMCRVPVNQ 347
S+ P+GS +G +C +C D EV + CGH C C R R CP+CR P+
Sbjct: 482 SAPEPTGSRNG--ECTVCFDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKD 539
Query: 348 AMRI 351
++I
Sbjct: 540 VIKI 543
>sp|Q8BUH7|RNF26_MOUSE Ring finger protein 26 OS=Mus musculus GN=Rnf26 PE=2 SV=1
Length = 424
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 301 RQCYLCNDREVTHALIPCGHNFFCSECAE---RTCDFDRTCPMCRVPVNQAMRI 351
++C +C D+ T L+PC H C C E R + R CP+CR + Q + +
Sbjct: 369 KKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRSILQTLNV 422
>sp|Q24307|IAP2_DROME Apoptosis 2 inhibitor OS=Drosophila melanogaster GN=Iap2 PE=2 SV=3
Length = 498
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 288 VSSTSPSGSIS---------GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTC 338
+S +P+G++S +R C +C D EV +PCGH C++CA + C
Sbjct: 427 MSVATPNGNLSLEEENRQLKDARLCKVCLDEEVGVVFLPCGHLATCNQCAPSVAN----C 482
Query: 339 PMCRVPVNQAMR 350
PMCR + +R
Sbjct: 483 PMCRADIKGFVR 494
>sp|Q05AK5|MYLIB_DANRE E3 ubiquitin-protein ligase MYLIP-B OS=Danio rerio GN=mylipb PE=2
SV=1
Length = 464
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 351
C LC ++E++ A PCGH F C CA + + CP+CR V++ +
Sbjct: 381 CALCCEQEISAAFCPCGHMFCCYNCASQL----QCCPVCRSEVDRVQHV 425
>sp|Q9BY78|RNF26_HUMAN RING finger protein 26 OS=Homo sapiens GN=RNF26 PE=2 SV=1
Length = 433
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 301 RQCYLCNDREVTHALIPCGHNFFCSECAE---RTCDFDRTCPMCRVPVNQAMRI 351
++C +C D+ T L+PC H C C E R + R CP+CR + Q + +
Sbjct: 378 KKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRGILQTLNV 431
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 265 GLGDSPSFDASPVNPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFC 324
G+ + + A+ + + +W ++ I R+C +C E++ +PC H C
Sbjct: 726 GMNHTTNTKANSMASAKVWE----NNQGAESKIKRERECVMCLSEEMSVIFLPCAHQVLC 781
Query: 325 SECAE-RTCDFDRTCPMCRVPVNQAMR 350
S+C + + CP CR + + ++
Sbjct: 782 SKCNQLHEKEAMEDCPSCRAKIQRRIQ 808
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP
PE=1 SV=4
Length = 711
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 10 KIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAK----REILSAADHFSALRASRKS 65
+ + + AK T V P F G+K + +++ S D S+
Sbjct: 80 RARQIAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPESKKLASQGDSISS------- 132
Query: 66 GALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-VTPSRDKEPV 124
L P+ PP +T E RVP +VGL++G G I +IQ + + ++P P
Sbjct: 133 -QLGPIHPPPRT--SMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 189
Query: 125 FEV--TGAPDSVEIARQEIESHIIRRTGSCVTPAEAVLNGDDNSA--DLLASLCNSGL 178
V TGAP+SV+ A+ ++ + R G NG N +++ +GL
Sbjct: 190 RSVSLTGAPESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGL 247
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 87 VPYKVVGLVVGPKGATIKRIQHQTNTYI-----VTPSRDKE-PVFEVTGAPDSVEIARQE 140
+P GLV+G G +K I QT ++ + P+ D +F + G+P ++ A+Q
Sbjct: 431 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQL 490
Query: 141 IESHI 145
IE I
Sbjct: 491 IEEKI 495
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 83 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK---EPVFEVTGAPDSVEIA 137
I+V VP VG+V+G G IK+IQ+ I D E + + G PD E A
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHA 382
>sp|P98170|XIAP_HUMAN E3 ubiquitin-protein ligase XIAP OS=Homo sapiens GN=XIAP PE=1 SV=2
Length = 497
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 288 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
+S+ + + C +C DR + +PCGH C +CAE CPMC +
Sbjct: 435 ISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 490
Query: 348 AMRII 352
+I
Sbjct: 491 KQKIF 495
>sp|Q3U0V1|FUBP2_MOUSE Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp
PE=1 SV=2
Length = 748
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 17/148 (11%)
Query: 10 KIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAK----REILSAADHFSALRASRKS 65
+ + + AK T V P F G+K + +++ S D +
Sbjct: 81 RARQIAAKIGGDAATTVNNNTPDFGFGGQKRQLEDGDQPDSKKLASQGDSIGS------- 133
Query: 66 GALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-VTPSRDKEPV 124
L P+ PP +T E RVP +VGL++G G I +IQ + + ++P P
Sbjct: 134 -QLGPIHPPPRT--SMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE 190
Query: 125 FEV--TGAPDSVEIARQEIESHIIRRTG 150
V TGAP+SV+ A+ ++ + R G
Sbjct: 191 RSVSLTGAPESVQKAKMMLDDIVSRGRG 218
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 87 VPYKVVGLVVGPKGATIKRIQHQTNTYI-----VTPSRDKE-PVFEVTGAPDSVEIARQE 140
+P GLV+G G +K I QT ++ + P+ D +F + G+P ++ A+Q
Sbjct: 432 IPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQL 491
Query: 141 IESHI 145
IE I
Sbjct: 492 IEEKI 496
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 83 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK---EPVFEVTGAPDSVEIA 137
I+V VP VG+V+G G IK+IQ+ I D E + + G PD E A
Sbjct: 326 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHA 383
>sp|Q60989|XIAP_MOUSE E3 ubiquitin-protein ligase XIAP OS=Mus musculus GN=Xiap PE=1 SV=2
Length = 496
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 288 VSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
+S+ + + C +C DR + +PCGH C +CAE CPMC +
Sbjct: 434 ISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 489
Query: 348 AMRII 352
+I
Sbjct: 490 KQKIF 494
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh
PE=1 SV=1
Length = 560
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD--KEPVFEVTGAPDSVEIAR 138
+ IE+RVP + V L++G +GA IK+++ QT I + D E V ++G P V A+
Sbjct: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAK 112
Query: 139 QEIESHIIRRT 149
I + T
Sbjct: 113 AAIHQILTENT 123
>sp|Q9H694|BICC1_HUMAN Protein bicaudal C homolog 1 OS=Homo sapiens GN=BICC1 PE=1 SV=2
Length = 974
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 34/144 (23%)
Query: 11 IKALRAKTNTYIKTPVR-------GEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ + +TNT I P + ++P V+G+KEDV AK I+S D S
Sbjct: 77 FQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMIMSVLDTKS------ 130
Query: 64 KSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP 123
VT+++ V + V+G G IK++ +T +I P ++
Sbjct: 131 ---------------NRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNN 175
Query: 124 VFE------VTGAPDSVEIARQEI 141
E + G P VE AR I
Sbjct: 176 QAEKSNQVSIAGQPAGVESARVRI 199
>sp|Q8CJC5|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus musculus GN=Neurl3 PE=2
SV=1
Length = 254
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 293 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
P + +C +C L+PCGH+ FC CA CP+CR + +
Sbjct: 187 PESEVISGEECVICFHNTANTRLMPCGHSHFCGSCAWHIFKDTARCPICRWQIEE 241
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD--KEPVFEVTGAPDSVEIAR 138
+ IE+RVP + V L++G +GA IK+++ QT I + D E V ++G P V A+
Sbjct: 53 IEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAK 112
Query: 139 QEIESHIIRRT 149
I + T
Sbjct: 113 AAIHQILTENT 123
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 24/105 (22%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVR--GEEPVFVVTGRKEDVARAKREILSAADHFSALRA 61
I R G IK LR +T I G+E V +++G V +AK AA H
Sbjct: 68 IGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAK-----AAIH------ 116
Query: 62 SRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRI 106
L+ +P V+ ++ VP + VG ++G G TI+ I
Sbjct: 117 ----QILTENTP-------VSEQLSVPQRSVGRIIGRGGETIRSI 150
>sp|Q96EH8|NEUL3_HUMAN E3 ubiquitin-protein ligase NEURL3 OS=Homo sapiens GN=NEURL3 PE=2
SV=2
Length = 262
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 293 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 346
P + +C +C L+PCGH +FC CA R CP+CR +
Sbjct: 192 PEPKATPGEECAICFYHAANTRLVPCGHTYFCRYCAWRVFSDTAKCPVCRWQIE 245
>sp|Q6IV57|RN141_RAT RING finger protein 141 OS=Rattus norvegicus GN=Rnf141 PE=2 SV=1
Length = 230
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 278 NPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRT 337
NPSS+ S ++ +C +C D ++PC H+F C +C ++ D R
Sbjct: 130 NPSSVTSCQASLWMGRVKQLTDEEECCICMDGR-ADLILPCAHSF-CQKCIDKWSDRHRN 187
Query: 338 CPMCRVPVNQA 348
CP+CR+ + A
Sbjct: 188 CPICRLQMTGA 198
>sp|Q99MB7|RN141_MOUSE RING finger protein 141 OS=Mus musculus GN=Rnf141 PE=2 SV=2
Length = 230
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 266 LGDSPSFDASPVNPSSIWSYPPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCS 325
L S + + NPSS+ S ++ +C +C D ++PC H+F C
Sbjct: 118 LAQSSTSEEPDENPSSVTSCQASLWMGRVKQLTDEEECCICMDGR-ADLILPCAHSF-CQ 175
Query: 326 ECAERTCDFDRTCPMCRVPVNQA 348
+C ++ D R CP+CR+ + A
Sbjct: 176 KCIDKWSDRHRNCPICRLQMTGA 198
>sp|P41437|IAP3_NPVOP E3 ubiquitin-protein ligase IAP-3 OS=Orgyia pseudotsugata
multicapsid polyhedrosis virus GN=IAP3 PE=1 SV=1
Length = 268
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 286 PPVSSTSPSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345
P + + ++ R C +C E T +PCGH C +CA TCP+CR +
Sbjct: 204 PHIERPAVEAEVADDRLCKICLGAEKTVCFVPCGHVVACGKCAAGV----TTCPVCRGQL 259
Query: 346 NQAMRIIS 353
++A+R+
Sbjct: 260 DKAVRMYQ 267
>sp|Q6R7C4|IAP4_OSHVF Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF106 PE=4 SV=1
Length = 465
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECA-ERTCDFDRT--CPMCRVPVNQAMRII 352
C C +R+ A IPCGH F C+ C E + + CPMCRV V + +I
Sbjct: 405 CKACYERKADIAFIPCGHVFSCNICTMEMFASYKKKKRCPMCRVHVEKVQKIF 457
>sp|P06105|SC160_YEAST Protein SCP160 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SCP160 PE=1 SV=3
Length = 1222
Score = 41.2 bits (95), Expect = 0.013, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP-VFEVTGAPDSVEIARQ 139
VT + +P + G ++GP G ++++ + N + P++D +TGAP++VE A +
Sbjct: 940 VTKTIDIPAERKGALIGPGGIVRRQLESEFNINLFVPNKDDPSGKITITGAPENVEKAEK 999
Query: 140 EIESHIIR 147
+I + IIR
Sbjct: 1000 KILNEIIR 1007
Score = 35.4 bits (80), Expect = 0.73, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQE 140
+T E+ VP K G ++GP G R+Q + N +I P RD E + + G V A +E
Sbjct: 713 ITKELIVPVKFHGSLIGPHGTYRNRLQEKYNVFINFP-RDNE-IVTIRGPSRGVNKAHEE 770
Query: 141 IES 143
+++
Sbjct: 771 LKA 773
>sp|Q99MQ1|BICC1_MOUSE Protein bicaudal C homolog 1 OS=Mus musculus GN=Bicc1 PE=2 SV=1
Length = 977
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 57/144 (39%), Gaps = 34/144 (23%)
Query: 11 IKALRAKTNTYIKTPVR-------GEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ + +TNT I P + ++P V+G+KEDV AK I+S D S
Sbjct: 79 FQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKEDVKEAKEMIMSVLDTKS------ 132
Query: 64 KSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP 123
VT+++ V + V+G G IK++ T +I P ++
Sbjct: 133 ---------------NRVTLKMDVSHTEHSHVIGKGGNNIKKVMEDTGCHIHFPDSNRNN 177
Query: 124 VFE------VTGAPDSVEIARQEI 141
E + G P VE AR I
Sbjct: 178 QAEKSNQVSIAGQPAGVESARARI 201
>sp|Q5U4T7|BIC1B_XENLA Protein bicaudal C homolog 1-B OS=Xenopus laevis GN=bicc1-b PE=2
SV=1
Length = 970
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 34/144 (23%)
Query: 11 IKALRAKTNTYIKTPVR-------GEEPVFVVTGRKEDVARAKREILSAADHFSALRASR 63
+ + +TNT I P + ++P V+G+KE+V AK I+S D S
Sbjct: 75 FQKIMEETNTQIAWPSKLKIGAKSKKDPHIKVSGKKENVKEAKERIMSVLDTKS------ 128
Query: 64 KSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP 123
VT+++ V + V+G G IK++ +T +I P ++
Sbjct: 129 ---------------NRVTLKMDVSHTEHSHVIGKGGNNIKKVMEETGCHIHFPDSNRNN 173
Query: 124 VFE------VTGAPDSVEIARQEI 141
E + G P VE AR I
Sbjct: 174 QAEKSNQVSIAGQPAGVESARVRI 197
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,764,899
Number of Sequences: 539616
Number of extensions: 5873051
Number of successful extensions: 23578
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 458
Number of HSP's that attempted gapping in prelim test: 19419
Number of HSP's gapped (non-prelim): 2414
length of query: 353
length of database: 191,569,459
effective HSP length: 118
effective length of query: 235
effective length of database: 127,894,771
effective search space: 30055271185
effective search space used: 30055271185
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)