Query psy4141
Match_columns 353
No_of_seqs 386 out of 2544
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 17:58:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 3.2E-24 1.1E-28 189.5 9.1 146 2-147 19-175 (178)
2 2jvz_A KH type-splicing, FAR u 99.9 1.7E-23 5.9E-28 182.1 11.9 139 2-148 15-161 (164)
3 3krm_A Insulin-like growth fac 99.9 4.9E-23 1.7E-27 179.3 14.3 133 2-148 16-157 (163)
4 2jzx_A Poly(RC)-binding protei 99.9 2.6E-23 8.9E-28 180.6 11.2 137 2-147 18-159 (160)
5 1j4w_A FUSE binding protein; s 99.9 3.9E-23 1.3E-27 182.0 10.9 140 2-145 16-174 (174)
6 2dgr_A Ring finger and KH doma 99.7 1.3E-18 4.5E-23 135.1 6.4 78 76-153 5-82 (83)
7 2qnd_A FMR1 protein; KH domain 99.7 2E-18 6.9E-23 147.7 7.7 116 3-147 18-142 (144)
8 3n89_A Defective in GERM LINE 99.7 5.6E-18 1.9E-22 164.7 10.7 145 2-146 43-260 (376)
9 2e3u_A PH-DIM2P, hypothetical 99.6 1.2E-15 4E-20 138.9 10.4 128 3-147 48-191 (219)
10 1zzk_A Heterogeneous nuclear r 99.6 4.8E-15 1.6E-19 114.6 8.8 72 80-151 6-80 (82)
11 1dtj_A RNA-binding neurooncolo 99.5 6.7E-15 2.3E-19 112.0 6.6 68 80-147 2-75 (76)
12 2p2r_A Poly(RC)-binding protei 99.5 5.4E-15 1.9E-19 112.6 5.4 69 80-148 4-75 (76)
13 2ctm_A Vigilin; K homology typ 99.5 2.4E-14 8.3E-19 113.8 9.3 78 77-154 13-92 (95)
14 2axy_A Poly(RC)-binding protei 99.5 7.6E-15 2.6E-19 111.1 5.6 68 80-147 4-72 (73)
15 1wvn_A Poly(RC)-binding protei 99.5 1E-14 3.5E-19 112.8 6.3 69 80-148 5-76 (82)
16 2ctf_A Vigilin; K homology typ 99.5 5.6E-16 1.9E-20 124.8 -1.5 90 35-150 5-95 (102)
17 2cte_A Vigilin; K homology typ 99.5 3.1E-14 1.1E-18 113.0 8.5 74 77-150 13-87 (94)
18 1x4n_A FAR upstream element bi 99.5 3.3E-14 1.1E-18 112.3 8.6 71 79-149 13-86 (92)
19 1j5k_A Heterogeneous nuclear r 99.5 8.7E-15 3E-19 114.9 5.0 72 80-151 13-87 (89)
20 1x4m_A FAR upstream element bi 99.5 1.1E-14 3.7E-19 115.6 5.5 72 77-148 11-87 (94)
21 2opv_A KHSRP protein; KH domai 99.5 3.8E-14 1.3E-18 110.3 7.9 68 80-147 13-85 (85)
22 2ctl_A Vigilin; K homology typ 99.5 5.5E-14 1.9E-18 112.2 8.4 70 80-149 16-89 (97)
23 1ec6_A RNA-binding protein NOV 99.5 2.5E-14 8.5E-19 111.8 5.4 68 81-148 3-76 (87)
24 1vig_A Vigilin; RNA-binding pr 99.5 3E-14 1E-18 107.2 5.6 66 80-145 4-70 (71)
25 2hh2_A KH-type splicing regula 99.5 3.6E-14 1.2E-18 115.2 6.2 68 81-148 7-80 (107)
26 1we8_A Tudor and KH domain con 99.5 8.8E-14 3E-18 112.3 7.9 67 81-147 15-86 (104)
27 1tua_A Hypothetical protein AP 99.5 1.3E-13 4.5E-18 122.7 9.7 128 3-147 18-160 (191)
28 2hh3_A KH-type splicing regula 99.5 6.6E-14 2.3E-18 113.5 6.7 71 81-151 11-84 (106)
29 2ctk_A Vigilin; K homology typ 99.4 2.6E-13 9.1E-18 109.5 7.7 69 81-149 17-86 (104)
30 2ctj_A Vigilin; K homology typ 99.4 1.1E-12 3.8E-17 104.2 7.2 73 77-149 13-87 (95)
31 2vje_B MDM4 protein; proto-onc 99.3 2.4E-13 8.2E-18 99.8 2.3 54 299-352 6-61 (63)
32 2vje_A E3 ubiquitin-protein li 99.3 2.8E-13 9.4E-18 99.8 2.4 55 298-352 6-62 (64)
33 2ea5_A Cell growth regulator w 99.3 9.6E-13 3.3E-17 98.1 3.9 53 297-353 12-64 (68)
34 2anr_A Neuro-oncological ventr 99.2 6.1E-12 2.1E-16 110.6 5.4 71 78-148 3-79 (178)
35 2jvz_A KH type-splicing, FAR u 99.2 1.2E-11 4.1E-16 107.0 6.9 69 81-149 2-75 (164)
36 3krm_A Insulin-like growth fac 99.2 1.3E-11 4.4E-16 106.9 6.7 68 81-148 3-74 (163)
37 1j4w_A FUSE binding protein; s 99.2 9.1E-12 3.1E-16 109.1 5.5 70 80-149 2-74 (174)
38 4ic3_A E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 96.6 1.7 52 297-352 21-72 (74)
39 2d8t_A Dactylidin, ring finger 99.2 2.4E-11 8.1E-16 90.7 5.0 50 297-347 12-61 (71)
40 2yho_A E3 ubiquitin-protein li 99.2 5.9E-12 2E-16 96.5 1.7 51 298-352 16-66 (79)
41 2jzx_A Poly(RC)-binding protei 99.2 2E-11 6.9E-16 105.3 5.1 69 81-149 5-74 (160)
42 2ecg_A Baculoviral IAP repeat- 99.1 6.4E-12 2.2E-16 95.1 1.0 51 298-352 23-73 (75)
43 2csy_A Zinc finger protein 183 99.1 4.5E-11 1.5E-15 91.4 5.4 53 295-348 10-62 (81)
44 2ea6_A Ring finger protein 4; 99.1 2.8E-11 9.5E-16 89.2 4.0 52 295-347 10-68 (69)
45 2dgr_A Ring finger and KH doma 99.1 4E-11 1.4E-15 92.8 4.8 53 2-54 23-75 (83)
46 2djb_A Polycomb group ring fin 99.1 4.8E-11 1.6E-15 89.3 4.9 54 294-348 9-63 (72)
47 2ysl_A Tripartite motif-contai 99.1 1.4E-10 4.9E-15 86.5 6.6 52 295-347 15-69 (73)
48 2ecw_A Tripartite motif-contai 99.1 1.1E-10 3.7E-15 89.4 5.7 54 293-347 12-71 (85)
49 2ecn_A Ring finger protein 141 99.1 4.6E-11 1.6E-15 88.7 3.4 55 296-352 11-65 (70)
50 3ng2_A RNF4, snurf, ring finge 99.1 4.5E-11 1.5E-15 88.7 3.0 54 298-352 8-70 (71)
51 3n89_A Defective in GERM LINE 99.1 9.7E-11 3.3E-15 113.9 6.1 67 78-144 27-103 (376)
52 2yur_A Retinoblastoma-binding 99.1 6.2E-11 2.1E-15 89.3 3.6 53 294-347 9-64 (74)
53 2egp_A Tripartite motif-contai 99.0 5.3E-11 1.8E-15 90.2 2.4 53 294-347 6-65 (79)
54 4ayc_A E3 ubiquitin-protein li 99.0 6.5E-11 2.2E-15 99.9 3.1 49 299-348 52-100 (138)
55 2ct2_A Tripartite motif protei 99.0 1.6E-10 5.4E-15 89.3 5.0 52 294-346 9-67 (88)
56 2axy_A Poly(RC)-binding protei 99.0 1.4E-10 4.9E-15 87.4 4.5 54 2-55 18-72 (73)
57 2l0b_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 91.7 3.7 51 296-347 36-89 (91)
58 2ecy_A TNF receptor-associated 99.0 1.3E-10 4.5E-15 85.3 4.0 51 296-347 11-62 (66)
59 2xeu_A Ring finger protein 4; 99.0 8.6E-11 2.9E-15 85.2 3.0 53 299-352 2-63 (64)
60 2ect_A Ring finger protein 126 99.0 1.6E-10 5.6E-15 87.5 4.0 54 294-348 9-65 (78)
61 2ctl_A Vigilin; K homology typ 99.0 5.3E-10 1.8E-14 89.0 7.0 57 2-58 30-90 (97)
62 3ztg_A E3 ubiquitin-protein li 99.0 1.9E-10 6.6E-15 89.9 4.3 52 294-346 7-61 (92)
63 1e4u_A Transcriptional repress 99.0 1.8E-10 6.1E-15 88.0 3.9 55 295-350 6-65 (78)
64 1t1h_A Gspef-atpub14, armadill 99.0 2.5E-10 8.6E-15 86.5 4.5 51 296-347 4-55 (78)
65 2cpq_A FragIle X mental retard 99.0 1.8E-10 6.3E-15 90.2 3.8 64 78-143 12-77 (91)
66 2ecv_A Tripartite motif-contai 99.0 1.8E-10 6.2E-15 88.1 3.4 52 295-347 14-71 (85)
67 1chc_A Equine herpes virus-1 r 99.0 1.3E-10 4.5E-15 85.6 2.5 52 299-351 4-56 (68)
68 2ep4_A Ring finger protein 24; 99.0 2.2E-10 7.4E-15 85.9 3.7 56 295-351 10-68 (74)
69 2kiz_A E3 ubiquitin-protein li 99.0 4.7E-10 1.6E-14 82.9 5.3 54 296-350 10-66 (69)
70 2ctm_A Vigilin; K homology typ 99.0 8.3E-10 2.8E-14 87.5 6.6 57 2-58 30-88 (95)
71 2ysj_A Tripartite motif-contai 99.0 6.4E-10 2.2E-14 80.8 5.4 46 295-341 15-63 (63)
72 1x4j_A Ring finger protein 38; 98.9 3.4E-10 1.2E-14 85.2 3.4 51 296-347 19-72 (75)
73 1iym_A EL5; ring-H2 finger, ub 98.9 3.9E-10 1.3E-14 79.5 3.3 48 298-346 3-54 (55)
74 1vig_A Vigilin; RNA-binding pr 98.9 5.4E-10 1.8E-14 83.8 4.1 52 2-53 18-70 (71)
75 1zzk_A Heterogeneous nuclear r 98.9 9.4E-10 3.2E-14 84.7 5.3 55 2-56 20-77 (82)
76 2ecj_A Tripartite motif-contai 98.9 8E-10 2.7E-14 78.6 4.2 46 295-341 10-58 (58)
77 2ecm_A Ring finger and CHY zin 98.9 4E-10 1.4E-14 79.4 2.5 47 299-346 4-54 (55)
78 2opv_A KHSRP protein; KH domai 98.9 1.2E-09 4E-14 84.7 5.4 53 2-54 27-84 (85)
79 3fl2_A E3 ubiquitin-protein li 98.9 4.3E-10 1.5E-14 92.9 2.8 49 298-347 50-99 (124)
80 1x4n_A FAR upstream element bi 98.9 1.6E-09 5.5E-14 85.2 6.0 55 2-56 28-85 (92)
81 1k1g_A SF1-BO isoform; splicin 98.9 1.9E-09 6.3E-14 90.4 6.5 69 79-147 5-99 (131)
82 1wgm_A Ubiquitin conjugation f 98.9 2.1E-09 7.3E-14 85.6 6.5 52 295-347 17-69 (98)
83 1dtj_A RNA-binding neurooncolo 98.9 1.1E-09 3.9E-14 82.8 4.7 54 2-55 16-75 (76)
84 3lrq_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 90.1 2.1 50 297-347 19-70 (100)
85 1x4m_A FAR upstream element bi 98.9 9.3E-10 3.2E-14 87.0 4.2 55 2-56 28-87 (94)
86 3l11_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 92.2 1.8 51 296-347 11-62 (115)
87 2hh2_A KH-type splicing regula 98.9 1.8E-09 6E-14 87.4 5.7 55 2-56 20-80 (107)
88 1g25_A CDK-activating kinase a 98.9 6.1E-10 2.1E-14 81.5 2.7 48 299-347 2-55 (65)
89 2p2r_A Poly(RC)-binding protei 98.9 1.4E-09 4.9E-14 82.4 4.8 54 2-55 18-74 (76)
90 1j5k_A Heterogeneous nuclear r 98.9 1.2E-09 4E-14 85.5 4.4 55 2-56 27-84 (89)
91 1ec6_A RNA-binding protein NOV 98.9 2.1E-09 7.2E-14 83.6 5.8 59 2-60 16-80 (87)
92 2hh3_A KH-type splicing regula 98.9 2.1E-09 7.2E-14 86.8 5.7 56 2-57 24-82 (106)
93 2cte_A Vigilin; K homology typ 98.9 1.9E-09 6.6E-14 85.1 5.4 56 2-57 30-86 (94)
94 2ctk_A Vigilin; K homology typ 98.9 3E-09 1E-13 85.6 6.3 57 2-58 30-87 (104)
95 2ckl_A Polycomb group ring fin 98.9 9E-10 3.1E-14 88.8 3.2 50 297-347 12-62 (108)
96 2yqr_A KIAA0907 protein; struc 98.9 5.9E-09 2E-13 85.8 8.0 68 80-147 11-99 (119)
97 3t6p_A Baculoviral IAP repeat- 98.9 4.1E-10 1.4E-14 109.0 1.2 52 297-352 292-343 (345)
98 1we8_A Tudor and KH domain con 98.8 2.3E-09 7.9E-14 86.2 5.4 58 2-59 28-90 (104)
99 2kr4_A Ubiquitin conjugation f 98.8 2.5E-09 8.4E-14 82.9 5.1 51 296-347 10-60 (85)
100 2y43_A E3 ubiquitin-protein li 98.8 9.9E-10 3.4E-14 87.1 2.8 50 297-347 19-69 (99)
101 1wvn_A Poly(RC)-binding protei 98.8 2.1E-09 7.3E-14 82.6 4.4 55 2-56 19-76 (82)
102 2kre_A Ubiquitin conjugation f 98.8 2.4E-09 8.1E-14 85.6 4.2 51 296-347 25-75 (100)
103 1z6u_A NP95-like ring finger p 98.8 1.4E-09 4.6E-14 93.3 2.8 49 298-347 76-125 (150)
104 1bor_A Transcription factor PM 98.8 5.7E-10 1.9E-14 79.5 -0.4 46 298-347 4-49 (56)
105 3hct_A TNF receptor-associated 98.8 3.1E-09 1.1E-13 87.1 3.6 51 296-347 14-65 (118)
106 2ckl_B Ubiquitin ligase protei 98.8 2.1E-09 7E-14 93.2 2.6 52 295-347 49-102 (165)
107 2ctf_A Vigilin; K homology typ 98.8 1.1E-08 3.8E-13 82.0 6.5 55 2-58 40-95 (102)
108 1v87_A Deltex protein 2; ring- 98.7 4E-09 1.4E-13 85.6 3.5 47 300-347 25-94 (114)
109 1jm7_A BRCA1, breast cancer ty 98.7 1.7E-09 5.9E-14 87.3 1.1 49 298-347 19-70 (112)
110 2y1n_A E3 ubiquitin-protein li 98.7 6.5E-09 2.2E-13 101.6 4.6 51 300-351 332-383 (389)
111 2ctj_A Vigilin; K homology typ 98.7 1.9E-08 6.6E-13 79.6 6.2 55 2-56 30-86 (95)
112 3knv_A TNF receptor-associated 98.7 2.2E-09 7.5E-14 91.1 0.7 49 296-345 27-76 (141)
113 4ap4_A E3 ubiquitin ligase RNF 98.7 6.4E-09 2.2E-13 85.9 3.1 49 298-347 5-60 (133)
114 1rmd_A RAG1; V(D)J recombinati 98.7 6.1E-09 2.1E-13 84.9 2.4 51 296-347 19-70 (116)
115 2ecl_A Ring-box protein 2; RNF 98.7 1.3E-08 4.6E-13 77.9 3.8 46 300-346 15-75 (81)
116 1jm7_B BARD1, BRCA1-associated 98.6 5.4E-09 1.8E-13 85.5 0.1 47 297-346 19-66 (117)
117 2c2l_A CHIP, carboxy terminus 98.6 2.3E-08 8E-13 92.7 3.5 48 299-347 207-255 (281)
118 4ap4_A E3 ubiquitin ligase RNF 98.6 2.1E-08 7.2E-13 82.7 2.8 54 298-352 70-132 (133)
119 3u1k_A Polyribonucleotide nucl 98.6 8.3E-08 2.8E-12 99.4 7.7 92 42-145 536-629 (630)
120 2e3u_A PH-DIM2P, hypothetical 98.5 6.9E-08 2.3E-12 87.6 5.8 64 81-146 34-102 (219)
121 2yu4_A E3 SUMO-protein ligase 98.5 4E-08 1.4E-12 77.4 3.5 47 297-344 4-59 (94)
122 2bl5_A MGC83862 protein, quaki 98.5 9.8E-08 3.4E-12 80.5 5.4 66 81-146 2-100 (140)
123 3dpl_R Ring-box protein 1; ubi 98.5 7.5E-08 2.6E-12 77.7 4.0 45 300-345 37-99 (106)
124 3hcs_A TNF receptor-associated 98.5 5.7E-08 2E-12 84.4 3.6 51 296-347 14-65 (170)
125 2f42_A STIP1 homology and U-bo 98.5 7.1E-08 2.4E-12 84.8 3.6 49 298-347 104-153 (179)
126 2qnd_A FMR1 protein; KH domain 98.4 1.9E-07 6.6E-12 79.3 3.8 60 81-141 4-64 (144)
127 3htk_C E3 SUMO-protein ligase 98.2 5.4E-07 1.8E-11 83.4 3.4 50 297-347 178-232 (267)
128 2d8s_A Cellular modulator of i 98.2 1E-06 3.4E-11 67.4 3.9 49 298-347 13-70 (80)
129 1tua_A Hypothetical protein AP 98.2 2.3E-06 7.9E-11 75.9 6.2 64 81-146 4-72 (191)
130 4a0k_B E3 ubiquitin-protein li 98.2 2.9E-07 9.8E-12 75.5 0.2 44 301-345 49-110 (117)
131 2yqr_A KIAA0907 protein; struc 98.1 2.1E-06 7.3E-11 70.4 5.1 56 2-57 32-101 (119)
132 4aid_A Polyribonucleotide nucl 98.1 1.8E-06 6.1E-11 90.6 4.7 64 81-147 570-634 (726)
133 1wim_A KIAA0161 protein; ring 98.1 1E-06 3.5E-11 69.0 1.8 45 299-344 4-61 (94)
134 2cpq_A FragIle X mental retard 98.0 1.2E-06 4.2E-11 68.4 1.6 50 3-54 29-80 (91)
135 3v69_A Protein filia; RNA-bind 98.0 9.5E-06 3.2E-10 67.4 6.2 68 81-148 56-125 (140)
136 1k1g_A SF1-BO isoform; splicin 97.9 1.2E-05 4.1E-10 67.1 5.2 54 2-55 26-99 (131)
137 2bay_A PRE-mRNA splicing facto 97.8 8.8E-06 3E-10 58.8 2.1 47 300-347 3-50 (61)
138 3vk6_A E3 ubiquitin-protein li 97.6 4.4E-05 1.5E-09 60.1 3.4 48 302-350 3-52 (101)
139 2ct0_A Non-SMC element 1 homol 97.4 0.00024 8.3E-09 53.2 5.8 48 298-346 13-63 (74)
140 1vyx_A ORF K3, K3RING; zinc-bi 97.3 9.6E-05 3.3E-09 53.1 2.5 49 298-346 4-58 (60)
141 2bl5_A MGC83862 protein, quaki 97.3 0.00013 4.4E-09 61.4 2.9 53 2-54 21-100 (140)
142 3cdi_A Polynucleotide phosphor 97.0 0.00024 8.1E-09 74.8 3.0 64 81-147 560-624 (723)
143 2cxc_A NUSA; transcription ter 97.0 0.0003 1E-08 59.5 2.9 89 3-116 50-138 (144)
144 3v69_A Protein filia; RNA-bind 96.8 0.0017 5.7E-08 54.0 5.9 56 2-57 69-126 (140)
145 3k1l_B Fancl; UBC, ring, RWD, 96.7 0.00032 1.1E-08 67.1 0.9 50 298-348 306-374 (381)
146 1e3p_A Guanosine pentaphosphat 96.7 0.00016 5.5E-09 76.3 -1.6 94 40-145 566-660 (757)
147 2asb_A Transcription elongatio 95.7 0.013 4.4E-07 53.7 5.7 91 3-119 131-222 (251)
148 1k0r_A NUSA; two component arr 95.6 0.015 5.1E-07 56.2 6.1 91 3-119 254-345 (366)
149 4aid_A Polyribonucleotide nucl 95.3 0.004 1.4E-07 65.4 0.9 53 2-56 583-635 (726)
150 2ko5_A Ring finger protein Z; 94.5 0.016 5.5E-07 44.9 2.3 56 294-351 22-77 (99)
151 2jun_A Midline-1; B-BOX, TRIM, 94.2 0.016 5.3E-07 45.2 1.6 33 299-332 2-37 (101)
152 1hh2_P NUSA, N utilization sub 93.1 0.16 5.3E-06 48.7 6.7 38 81-118 303-340 (344)
153 3nw0_A Non-structural maintena 92.0 0.1 3.6E-06 47.4 3.8 46 300-346 180-228 (238)
154 2cs3_A Protein C14ORF4, MY039 89.4 0.15 5.2E-06 38.2 1.9 34 300-334 15-52 (93)
155 2cxc_A NUSA; transcription ter 88.8 0.25 8.5E-06 41.5 3.0 36 81-116 36-71 (144)
156 3cdi_A Polynucleotide phosphor 85.0 0.17 5.9E-06 53.1 0.0 51 2-54 573-623 (723)
157 3gku_A Probable RNA-binding pr 84.6 0.61 2.1E-05 42.0 3.4 112 32-154 53-169 (225)
158 2pt7_G HP1451, hypothetical pr 81.1 0.39 1.3E-05 40.6 0.7 72 82-154 34-108 (152)
159 4hhu_A OR280; engineered prote 74.0 33 0.0011 27.5 11.3 96 28-147 40-148 (170)
160 1wh9_A 40S ribosomal protein S 73.8 1.2 4.2E-05 34.2 1.5 29 81-109 35-63 (92)
161 1e3p_A Guanosine pentaphosphat 72.9 0.23 8E-06 52.4 -3.7 50 2-53 611-660 (757)
162 3i2d_A E3 SUMO-protein ligase 64.9 3.5 0.00012 39.6 2.9 47 300-346 249-299 (371)
163 4fo9_A E3 SUMO-protein ligase 58.6 5.2 0.00018 38.3 2.8 47 300-346 215-265 (360)
164 2lri_C Autoimmune regulator; Z 57.5 8.4 0.00029 27.5 3.2 45 300-345 12-60 (66)
165 3iev_A GTP-binding protein ERA 54.0 5.2 0.00018 36.9 2.0 29 81-109 240-269 (308)
166 3m62_A Ubiquitin conjugation f 49.4 12 0.00041 40.4 4.0 50 297-347 888-938 (968)
167 1z60_A TFIIH basal transcripti 49.3 8.4 0.00029 27.1 1.9 40 301-341 16-58 (59)
168 2ba0_A Archeal exosome RNA bin 48.5 29 0.001 30.8 6.0 56 83-141 138-193 (229)
169 1weo_A Cellulose synthase, cat 46.5 11 0.00039 28.7 2.4 46 300-346 16-69 (93)
170 3j20_C 30S ribosomal protein S 43.5 8.2 0.00028 34.2 1.4 27 82-108 41-67 (210)
171 3ql9_A Transcriptional regulat 43.4 14 0.00046 30.2 2.6 48 298-346 55-113 (129)
172 2xzm_C KH domain containing pr 43.2 10 0.00035 34.3 2.0 30 81-110 47-76 (243)
173 3u5c_D RP13, YS3, 40S ribosoma 42.7 8.3 0.00028 34.8 1.3 29 82-110 45-73 (240)
174 2lbm_A Transcriptional regulat 42.3 19 0.00066 29.8 3.4 46 298-344 61-117 (142)
175 1ytb_A Protein (tata binding p 41.6 1.6E+02 0.0056 25.0 11.8 95 32-147 60-176 (180)
176 4e9j_A General secretion pathw 41.5 1.1E+02 0.0037 27.0 8.7 86 31-144 149-240 (246)
177 1wf3_A GTP-binding protein; GT 41.1 8.5 0.00029 35.5 1.2 27 83-109 232-259 (301)
178 1wil_A KIAA1045 protein; ring 39.8 33 0.0011 25.9 4.0 48 294-343 9-75 (89)
179 3eik_A Tata-box-binding protei 39.7 2E+02 0.0067 25.4 11.7 94 33-147 99-214 (218)
180 3iz6_B 40S ribosomal protein S 39.3 8.6 0.00029 34.4 0.9 29 81-109 44-72 (227)
181 1weu_A Inhibitor of growth fam 38.5 36 0.0012 25.9 4.2 45 299-345 35-86 (91)
182 3r8n_C 30S ribosomal protein S 37.3 8 0.00027 34.1 0.4 33 83-115 63-99 (206)
183 1rm1_A Tata-box binding protei 37.0 2.3E+02 0.0078 25.3 11.5 95 32-147 120-236 (240)
184 3i1m_C 30S ribosomal protein S 34.7 9.2 0.00032 34.4 0.3 31 83-113 64-98 (233)
185 2zkq_c 40S ribosomal protein S 34.6 9.4 0.00032 34.5 0.4 30 81-110 44-73 (243)
186 1mm2_A MI2-beta; PHD, zinc fin 34.4 7.9 0.00027 27.0 -0.1 48 297-345 6-57 (61)
187 2asb_A Transcription elongatio 34.4 11 0.00037 34.3 0.8 27 90-116 126-153 (251)
188 2vqe_C 30S ribosomal protein S 34.3 13 0.00044 33.5 1.2 27 83-109 64-90 (239)
189 2z0s_A Probable exosome comple 34.1 80 0.0028 27.9 6.5 57 83-142 150-207 (235)
190 1go3_E DNA-directed RNA polyme 32.4 28 0.00096 29.5 3.1 27 81-110 7-34 (187)
191 3bbn_C Ribosomal protein S3; s 31.8 11 0.00038 33.5 0.4 28 83-110 72-99 (218)
192 2fiy_A Protein FDHE homolog; F 31.3 7.1 0.00024 36.6 -1.1 46 299-344 181-231 (309)
193 1k0r_A NUSA; two component arr 30.8 16 0.00054 35.0 1.3 27 90-116 249-276 (366)
194 2kl8_A OR15; structural genomi 30.3 50 0.0017 23.5 3.5 44 103-147 23-66 (85)
195 2pv0_B DNA (cytosine-5)-methyl 29.2 37 0.0012 32.8 3.5 47 298-345 91-149 (386)
196 2l5u_A Chromodomain-helicase-D 28.8 26 0.00087 24.3 1.8 46 298-344 9-58 (61)
197 3a1b_A DNA (cytosine-5)-methyl 28.4 46 0.0016 28.0 3.6 43 299-345 78-135 (159)
198 2zet_C Melanophilin; complex, 27.6 3.4 0.00012 34.8 -3.6 45 299-344 67-117 (153)
199 3ezj_A General secretion pathw 26.9 1.2E+02 0.0042 26.5 6.4 23 121-143 215-237 (241)
200 3dhx_A Methionine import ATP-b 25.8 51 0.0018 25.3 3.3 43 101-143 36-87 (106)
201 1qd1_A Formiminotransferase-cy 25.5 1.1E+02 0.0037 28.7 5.9 57 97-153 13-80 (325)
202 1ega_A Protein (GTP-binding pr 22.1 29 0.00099 31.7 1.3 30 81-110 231-261 (301)
203 1x64_A Alpha-actinin-2 associa 21.4 1.4E+02 0.0047 21.6 4.8 14 300-313 25-38 (89)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.90 E-value=3.2e-24 Score=189.54 Aligned_cols=146 Identities=21% Similarity=0.291 Sum_probs=113.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC------CcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCC
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPT 75 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~------e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~ 75 (353)
.||||+|++||+|+++|||+|+++..+ .+++++|+|++++|.+|+.+|.+++.+...-.+........++....
T Consensus 19 ~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (178)
T 2anr_A 19 SIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTV 98 (178)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC----------------
T ss_pred eeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCccccCCcccccCCccCC
Confidence 479999999999999999999998643 35899999999999999999999988653210000000000010011
Q ss_pred CCCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-----CCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 76 GVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 76 ~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-----~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
+.....+.+|.||.+++|+||||+|++||+|+++|||+|.++... .++.|+|+|++++|++|+++|.++|.+
T Consensus 99 ~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 99 NPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175 (178)
T ss_dssp -CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred CCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 112347899999999999999999999999999999999998753 357999999999999999999999876
No 2
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=1.7e-23 Score=182.07 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=113.2
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-----CcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCC
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-----EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTG 76 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-----e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~ 76 (353)
.||||+|++||+|+++||++|+++..+ .+++++|+|++++|.+|+.+|++++++... . + +.+.....
T Consensus 15 ~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~----~--~--~~~~~~~~ 86 (164)
T 2jvz_A 15 LVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ----G--G--FGDRNEYG 86 (164)
T ss_dssp HHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSS----C--C--CSSCSSCT
T ss_pred EEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccC----C--C--CCCccccC
Confidence 479999999999999999999997543 357999999999999999999999886521 0 0 00000001
Q ss_pred CCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCC---CCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 77 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK---EPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 77 ~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~---e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
.....+.+|.||.+++|+||||+|++||+|+++|||+|.++..+. ++.|+|+|++++|++|+++|++++++-
T Consensus 87 ~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 87 SRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp TSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 111256889999999999999999999999999999999987532 579999999999999999999999873
No 3
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.89 E-value=4.9e-23 Score=179.33 Aligned_cols=133 Identities=21% Similarity=0.325 Sum_probs=113.0
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC----CcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCC
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG----EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGV 77 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~----e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (353)
.||||+|++||+|+++|||+|+++..+ .+++++|+|+++++.+|+.+|++++.+... . .+..
T Consensus 16 ~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~------~------~~~~-- 81 (163)
T 3krm_A 16 AIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENF------F------GPKE-- 81 (163)
T ss_dssp HHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTS------S------CSSC--
T ss_pred eeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccc------c------cccc--
Confidence 379999999999999999999998753 468999999999999999999999876411 0 1111
Q ss_pred CcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC----CC-CeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 78 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD----KE-PVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 78 ~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~----~e-~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
....+.+|.||.+++|+||||+|++|++|+++|||+|.++.+. .+ +.|+|+|++++|++|+++|++++++-
T Consensus 82 ~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 82 EVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 1237789999999999999999999999999999999998652 12 37999999999999999999999873
No 4
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=2.6e-23 Score=180.56 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=113.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-CcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcc
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGH 80 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 80 (353)
.||||+|++||+|+++||++|+++..+ .+++++|+|++++|.+|+.+|++++.+... ... . .. .......
T Consensus 18 ~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~--~~~--~----~~-~~~~~~~ 88 (160)
T 2jzx_A 18 SIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDIS--SSM--T----NS-TAASRPP 88 (160)
T ss_dssp HHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT--SCC--C----SS-SCCCCCS
T ss_pred eeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhhcc--ccC--C----CC-ccCCCCC
Confidence 479999999999999999999999764 468999999999999999999998876421 100 0 00 0000113
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC----CCCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR----DKEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~----~~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
.+.+|.||.+++|+||||+|++|++|+++|||+|.++.+ ..++.|+|+|++++|++|+++|.+++.+
T Consensus 89 ~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 89 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999998753 3468999999999999999999999876
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.89 E-value=3.9e-23 Score=182.00 Aligned_cols=140 Identities=26% Similarity=0.327 Sum_probs=109.3
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC---CcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCC------
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLS------ 72 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~---e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~------ 72 (353)
.||||+|++||+|+++|||+|+++... .++++.|+|++++|.+|+.+|.+++++...- .++...+.+
T Consensus 16 ~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~----~~~~~~p~~~~~~~~ 91 (174)
T 1j4w_A 16 IVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAG----NPGGPGPGGRGRGRG 91 (174)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred eeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC----CCCCCCCCCCCCCCC
Confidence 479999999999999999999997432 3589999999999999999999999876320 000000000
Q ss_pred --CC--CCCCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC------CCCCeEEEEcCHHHHHHHHHHHH
Q psy4141 73 --PP--TGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR------DKEPVFEVTGAPDSVEIARQEIE 142 (353)
Q Consensus 73 --~~--~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~------~~e~~v~I~G~~e~V~~A~~~I~ 142 (353)
.. .......+.+|.||.+++|+||||+|++||+|+++|||+|.++.+ ..++.|+|+|++++|++|+++|+
T Consensus 92 ~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~ 171 (174)
T 1j4w_A 92 QGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 171 (174)
T ss_dssp ------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHH
T ss_pred CCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHH
Confidence 00 000124688999999999999999999999999999999998764 23579999999999999999999
Q ss_pred HHH
Q psy4141 143 SHI 145 (353)
Q Consensus 143 ~~i 145 (353)
++|
T Consensus 172 ~~i 174 (174)
T 1j4w_A 172 EKI 174 (174)
T ss_dssp HHC
T ss_pred HhC
Confidence 875
No 6
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=135.10 Aligned_cols=78 Identities=68% Similarity=1.072 Sum_probs=73.4
Q ss_pred CCCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcCHHHHHHHHHHHHHHHHhhhCCCC
Q psy4141 76 GVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESHIIRRTGSCV 153 (353)
Q Consensus 76 ~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~i~~r~g~~~ 153 (353)
+.+++.+.+|.||.+++|+||||+|++||+||++|||+|+++.+++++.|+|+|++++|++|+++|++++..|+|+++
T Consensus 5 ~~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~i~~r~~~~~ 82 (83)
T 2dgr_A 5 SSGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRSGPSS 82 (83)
T ss_dssp CSCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHHHHSCCSCCC
T ss_pred CCCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHHHhcccCCCC
Confidence 456779999999999999999999999999999999999999877789999999999999999999999999999875
No 7
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.74 E-value=2e-18 Score=147.71 Aligned_cols=116 Identities=20% Similarity=0.306 Sum_probs=92.6
Q ss_pred eecCCCchHHHHHHHcCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceE
Q psy4141 3 KISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVT 82 (353)
Q Consensus 3 IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t 82 (353)
+||++|++|++|++++|+.|.....+.+.++...+++++|.+|+.++ + + ..
T Consensus 18 ~IG~~G~~I~~i~~e~gI~ii~~~~~~~~~i~~~~~p~~v~~~~~~l----~-~------------------------~e 68 (144)
T 2qnd_A 18 AIGTHGANIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFL----E-F------------------------AE 68 (144)
T ss_dssp HHCGGGHHHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHH----C-E------------------------EE
T ss_pred EECCChhHHHHHHHHHCCeEeccCCCchheeeccCCHHHHHHHHHhh----h-c------------------------ce
Confidence 69999999999999999544433333344444456799999887633 1 1 23
Q ss_pred EEEEecCCCccceeccCChHHHHHHHHhCc-eEEcCCCCC------CC--eEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQHQTNT-YIVTPSRDK------EP--VFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga-~I~ip~~~~------e~--~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
.+|.||.+++|++|||+|++||.|++.||+ +|.|+.+++ ++ .|+|+|++++|++|+++|+++|..
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999997 998876421 23 489999999999999999999874
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.74 E-value=5.6e-18 Score=164.70 Aligned_cols=145 Identities=22% Similarity=0.219 Sum_probs=106.8
Q ss_pred eeecCCC--chHHHHHHHcCceEEecCCC--------CcCeEEEecCHHHHHHHHHHHHHHHh-----hh----------
Q psy4141 2 KKISRSG--CKIKALRAKTNTYIKTPVRG--------EEPVFVVTGRKEDVARAKREILSAAD-----HF---------- 56 (353)
Q Consensus 2 ~IIGk~G--~~Ik~I~~~Tga~I~ip~~~--------e~~vv~I~G~~e~v~~Ak~~I~~i~~-----~~---------- 56 (353)
+||||+| ++|++|+++|||+|++|+.+ ....|+|+|.+++|++|+.+|++++. +.
T Consensus 43 ~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~Pl~i~~elp~~~i~~~~l 122 (376)
T 3n89_A 43 LMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCHFTVFMALSKMKMPLHEL 122 (376)
T ss_dssp HHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCEEEEEEECTTCSSCHHHH
T ss_pred hhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCCceEEEEccccccCcchh
Confidence 5899999 99999999999999999875 12689999999999999999988410 00
Q ss_pred -hhhhhccCCCCC--CCC---------------CCC---------------------CCCCcceEEEEEecCCCccceec
Q psy4141 57 -SALRASRKSGAL--SPL---------------SPP---------------------TGVPGHVTIEVRVPYKVVGLVVG 97 (353)
Q Consensus 57 -~~~~~~~~~g~~--~~~---------------~~~---------------------~~~~~~~t~~v~VP~~~vG~IIG 97 (353)
.-+......+.. ++. |+. ......++.+|.|+..+|.+|||
T Consensus 123 ~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~~~~~~s~~v~V~~~~H~~IIG 202 (376)
T 3n89_A 123 QAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPAPENNFTLHFTLSTYYVDQVLG 202 (376)
T ss_dssp HHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CCCSSCEEEEEEEEGGGHHHHTC
T ss_pred hhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcccccceEEEEEeCHHHHHHhhc
Confidence 011111111110 000 100 00113478899999999999999
Q ss_pred cCC--hHHHHHHHHhCceEEcCCCCC-------CCeEEEEcCHHHHHHHHHHHHHHHH
Q psy4141 98 PKG--ATIKRIQHQTNTYIVTPSRDK-------EPVFEVTGAPDSVEIARQEIESHII 146 (353)
Q Consensus 98 kgG--~tIk~Iq~~Tga~I~ip~~~~-------e~~v~I~G~~e~V~~A~~~I~~~i~ 146 (353)
++| ..|++|+++|||+|.||..+. ...|+|+|+.++|++|+++|+++|=
T Consensus 203 k~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLP 260 (376)
T 3n89_A 203 SSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLLP 260 (376)
T ss_dssp CTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTSE
T ss_pred CCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhCC
Confidence 998 677999999999999997532 2479999999999999999987654
No 9
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.62 E-value=1.2e-15 Score=138.92 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=97.1
Q ss_pred eecCCCchHHHHHHHcCceEEecCCCCcCeEEEecC-----HHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCC
Q psy4141 3 KISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGR-----KEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGV 77 (353)
Q Consensus 3 IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~G~-----~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (353)
|||++|.+|+.|+++||++|++... +..+.|.+. ++++++|+..|..++..+.--.+.... .++
T Consensus 48 lIG~gGk~Ik~I~e~tgvkI~I~~~--~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~ll--------~dd- 116 (219)
T 2e3u_A 48 LIGKKGQTKKEIEKRTKTKITIDSE--TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRLL--------NEG- 116 (219)
T ss_dssp HHCGGGHHHHHHHHHHTEEEEECTT--TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGGG--------STT-
T ss_pred hhcccHHHHHHHHHHHCcEEEEEcC--CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCccccceec--------cCC-
Confidence 7999999999999999999999833 455677664 799999999999998432111111000 000
Q ss_pred CcceEEEEEec-----------CCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcCHHHHHHHHHHHHHHHH
Q psy4141 78 PGHVTIEVRVP-----------YKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESHII 146 (353)
Q Consensus 78 ~~~~t~~v~VP-----------~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~i~ 146 (353)
.....+.|+ .+.+|+||||+|+|||.|++.|||+|+++. +.|.|.|++++|+.|+++|+++|.
T Consensus 117 --~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~~~~i~~A~~~i~~li~ 190 (219)
T 2e3u_A 117 --EYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGNPIQIEIAKTAIEKLAR 190 (219)
T ss_dssp --CEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEECHHHHHHHHHHHHHHHT
T ss_pred --ccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeCHHHHHHHHHHHHHHHc
Confidence 011223333 236899999999999999999999999863 579999999999999999999995
Q ss_pred h
Q psy4141 147 R 147 (353)
Q Consensus 147 ~ 147 (353)
.
T Consensus 191 g 191 (219)
T 2e3u_A 191 G 191 (219)
T ss_dssp T
T ss_pred C
Confidence 4
No 10
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.58 E-value=4.8e-15 Score=114.63 Aligned_cols=72 Identities=22% Similarity=0.481 Sum_probs=65.9
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC---CCCCeEEEEcCHHHHHHHHHHHHHHHHhhhCC
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR---DKEPVFEVTGAPDSVEIARQEIESHIIRRTGS 151 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~---~~e~~v~I~G~~e~V~~A~~~I~~~i~~r~g~ 151 (353)
..+.+|.||.+++|.||||+|++||+|+++|||+|.++.. ..++.|+|+|++++|++|+++|++++.+..|.
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~g~ 80 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGK 80 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHHHSS
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhccCC
Confidence 4889999999999999999999999999999999998864 23579999999999999999999999987765
No 11
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.54 E-value=6.7e-15 Score=112.00 Aligned_cols=68 Identities=24% Similarity=0.398 Sum_probs=61.4
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC------CCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~------~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
+.+.+|.||.+++|.||||+|++||+|+++|||+|.++.++ .++.|+|+|++++|++|+++|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 36889999999999999999999999999999999998752 357999999999999999999998865
No 12
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.53 E-value=5.4e-15 Score=112.63 Aligned_cols=69 Identities=20% Similarity=0.425 Sum_probs=63.1
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC---CCCCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR---DKEPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~---~~e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
..+.+|.||.+++|.||||+|++|++|+++|||+|.++.. ..++.|+|+|++++|++|+++|.+++.+.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 4889999999999999999999999999999999998763 24689999999999999999999998764
No 13
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.53 E-value=2.4e-14 Score=113.78 Aligned_cols=78 Identities=22% Similarity=0.281 Sum_probs=69.0
Q ss_pred CCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC--CCCeEEEEcCHHHHHHHHHHHHHHHHhhhCCCCc
Q psy4141 77 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD--KEPVFEVTGAPDSVEIARQEIESHIIRRTGSCVT 154 (353)
Q Consensus 77 ~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~--~e~~v~I~G~~e~V~~A~~~I~~~i~~r~g~~~~ 154 (353)
+...++.+|.||.+++|.|||++|++||+|+++|||+|.||.+. .++.|+|+|.+++|++|+++|++++++......+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~~~~~ 92 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLADSGP 92 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34468999999999999999999999999999999999999764 3568999999999999999999999986664443
No 14
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.53 E-value=7.6e-15 Score=111.06 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=63.0
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-CCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
..+.+|.||.+.+|.||||+|++||+|+++|||+|.++.++ .++.|+|+|++++|.+|+++|.++|++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 38899999999999999999999999999999999998763 467999999999999999999999875
No 15
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=1e-14 Score=112.76 Aligned_cols=69 Identities=22% Similarity=0.434 Sum_probs=62.3
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC---CCCCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR---DKEPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~---~~e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
..+.+|.||.+++|.||||+|++||+|+++|||+|.++.. ..++.|+|+|++++|++|+++|.+++.+.
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 4889999999999999999999999999999999998763 24679999999999999999999998875
No 16
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=5.6e-16 Score=124.83 Aligned_cols=90 Identities=21% Similarity=0.361 Sum_probs=76.0
Q ss_pred EecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceEEEEEecCCCccceeccCChHHHHHHHH-hCce
Q psy4141 35 VTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQ-TNTY 113 (353)
Q Consensus 35 I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~-Tga~ 113 (353)
|+|++++|.+|+.+|+++++. .++.+|.||..+|++|||++|++||+|+++ ++++
T Consensus 5 i~G~~~~V~~A~~~i~~~~~~------------------------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~ 60 (102)
T 2ctf_A 5 SSGEPEKLGQALTEVYAKANS------------------------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVH 60 (102)
T ss_dssp CCCCCCCCCCSCCCCCCCCCC------------------------CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSE
T ss_pred cCcCHHHHHHHHHHHHHHhcC------------------------eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcE
Confidence 467777777777776544332 278999999999999999999999999997 5999
Q ss_pred EEcCCCCCCCeEEEEcCHHHHHHHHHHHHHHHHhhhC
Q psy4141 114 IVTPSRDKEPVFEVTGAPDSVEIARQEIESHIIRRTG 150 (353)
Q Consensus 114 I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~i~~r~g 150 (353)
|.||. .++.|+|.|++++|++|+.+|++++++...
T Consensus 61 I~fp~--~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 61 IEFTE--GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEECS--SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCC--CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 99997 456899999999999999999999988544
No 17
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.51 E-value=3.1e-14 Score=112.96 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=66.4
Q ss_pred CCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-CCCeEEEEcCHHHHHHHHHHHHHHHHhhhC
Q psy4141 77 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGAPDSVEIARQEIESHIIRRTG 150 (353)
Q Consensus 77 ~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-~e~~v~I~G~~e~V~~A~~~I~~~i~~r~g 150 (353)
+..+++.+|.||.+++|.|||+||++||+|+++|||+|.|+..+ .++.|+|+|++++|++|+++|++++.+..-
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 34468999999999999999999999999999999999999754 357999999999999999999999987443
No 18
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.51 E-value=3.3e-14 Score=112.32 Aligned_cols=71 Identities=28% Similarity=0.463 Sum_probs=64.5
Q ss_pred cceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC---CCCeEEEEcCHHHHHHHHHHHHHHHHhhh
Q psy4141 79 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGAPDSVEIARQEIESHIIRRT 149 (353)
Q Consensus 79 ~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~---~e~~v~I~G~~e~V~~A~~~I~~~i~~r~ 149 (353)
..++.+|.||.+++|+||||+|++||+|+++|||+|.++.+. .++.|+|+|++++|++|+++|++++++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 358899999999999999999999999999999999998752 35799999999999999999999998743
No 19
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.51 E-value=8.7e-15 Score=114.94 Aligned_cols=72 Identities=22% Similarity=0.481 Sum_probs=64.6
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC---CCCCeEEEEcCHHHHHHHHHHHHHHHHhhhCC
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR---DKEPVFEVTGAPDSVEIARQEIESHIIRRTGS 151 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~---~~e~~v~I~G~~e~V~~A~~~I~~~i~~r~g~ 151 (353)
..+.+|.||.+++|.||||+|++||+|+++|||+|.++.. ..++.|+|+|++++|++|+++|++++.+..|.
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~~g~ 87 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGK 87 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhhhcC
Confidence 5889999999999999999999999999999999999764 24689999999999999999999999987554
No 20
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.51 E-value=1.1e-14 Score=115.62 Aligned_cols=72 Identities=28% Similarity=0.462 Sum_probs=65.7
Q ss_pred CCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-----CCCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 77 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 77 ~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-----~e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
.|+..+.+|.||.+++|+||||+|++||+|+++|||+|.++.+. .++.|+|+|++++|++|+++|++++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 35679999999999999999999999999999999999988653 4688999999999999999999999863
No 21
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.50 E-value=3.8e-14 Score=110.32 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=61.5
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-----CCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-----~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
..+.+|.||.+.+|.||||+|++||+|+++|||+|.++.+. .++.|+|+|++++|++|+++|++++++
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 37889999999999999999999999999999999988653 256799999999999999999998864
No 22
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=5.5e-14 Score=112.16 Aligned_cols=70 Identities=26% Similarity=0.337 Sum_probs=64.3
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC----CCCeEEEEcCHHHHHHHHHHHHHHHHhhh
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD----KEPVFEVTGAPDSVEIARQEIESHIIRRT 149 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~----~e~~v~I~G~~e~V~~A~~~I~~~i~~r~ 149 (353)
..+.+|.||.++||.|||+||++|++|+++|||+|.|+.+. .++.|+|+|++++|++|+++|++++.+-.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999765 35799999999999999999999988743
No 23
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=2.5e-14 Score=111.80 Aligned_cols=68 Identities=24% Similarity=0.404 Sum_probs=62.5
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC------CCCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~------~e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
.+.+|.||.+.+|+||||+|++|++|+++|||+|.++.++ .++.|+|+|++++|++|+++|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999999999999999998642 3579999999999999999999999873
No 24
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.48 E-value=3e-14 Score=107.19 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=60.5
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-CCCeEEEEcCHHHHHHHHHHHHHHH
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGAPDSVEIARQEIESHI 145 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-~e~~v~I~G~~e~V~~A~~~I~~~i 145 (353)
..+.+|.||.+++|.|||+||++|++|+++|||+|.|+.+. .++.|+|+|++++|++|+++|++++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999999999999764 4569999999999999999998864
No 25
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=3.6e-14 Score=115.25 Aligned_cols=68 Identities=26% Similarity=0.465 Sum_probs=62.0
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC------CCCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~------~e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
.+.+|.||.++||+||||+|++||+|+++|||+|+|..+. .++.|+|+|++++|++|+++|+++|.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999988752 3479999999999999999999998763
No 26
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.47 E-value=8.8e-14 Score=112.34 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=62.4
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-----CCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-----~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
.+.+|.||.+++|.||||+|++||+|+++|||+|.++... .++.|+|+|++++|++|+++|++++.+
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999998753 368999999999999999999999976
No 27
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.47 E-value=1.3e-13 Score=122.69 Aligned_cols=128 Identities=19% Similarity=0.224 Sum_probs=101.3
Q ss_pred eecCCCchHHHHHHHcCceEEecCCCCcCeEEEe-----cCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCC
Q psy4141 3 KISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVT-----GRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGV 77 (353)
Q Consensus 3 IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~-----G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~ 77 (353)
|||++|++++.|+++++++|++... ++.+.|. |++.++.+|+..|..+...|+.-.+.+...
T Consensus 18 liGk~g~~~k~i~e~~g~~i~id~~--~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~----------- 84 (191)
T 1tua_A 18 VIGPRGEVKAEIMRRTGTVITVDTE--NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLE----------- 84 (191)
T ss_dssp HHCGGGHHHHHHHHHHTEEEEEETT--TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGS-----------
T ss_pred HHhcCHhHHHHHHHHHCcEEEEEcC--CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhccc-----------
Confidence 6999999999999999999999743 5666777 999999999999999988664322221110
Q ss_pred CcceEEEEEec----------CCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 78 PGHVTIEVRVP----------YKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 78 ~~~~t~~v~VP----------~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
.+.....+.++ .+.+|+||||+|.||+.|+..|||+|++.. ..|.|.|++++++.|+..|+++|..
T Consensus 85 Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 85 EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 01122234444 246899999999999999999999999863 3899999999999999999999963
No 28
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6.6e-14 Score=113.45 Aligned_cols=71 Identities=31% Similarity=0.450 Sum_probs=62.5
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC---CCCeEEEEcCHHHHHHHHHHHHHHHHhhhCC
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGAPDSVEIARQEIESHIIRRTGS 151 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~---~e~~v~I~G~~e~V~~A~~~I~~~i~~r~g~ 151 (353)
.+++|.||.+++|.||||+|++||+|+++|||+|+|+.++ .++.|+|+|++++|++|+++|++++.+..-.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccccC
Confidence 5789999999999999999999999999999999998653 3568999999999999999999999885443
No 29
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=2.6e-13 Score=109.54 Aligned_cols=69 Identities=25% Similarity=0.491 Sum_probs=63.4
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-CCCeEEEEcCHHHHHHHHHHHHHHHHhhh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-KEPVFEVTGAPDSVEIARQEIESHIIRRT 149 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-~e~~v~I~G~~e~V~~A~~~I~~~i~~r~ 149 (353)
.+.+|.||.++||.|||+||++||+|+++|||+|.|+.+. ..+.|+|+|++++|++|+++|++++++-.
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 8899999999999999999999999999999999999764 34599999999999999999999988733
No 30
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.36 E-value=1.1e-12 Score=104.16 Aligned_cols=73 Identities=21% Similarity=0.340 Sum_probs=65.9
Q ss_pred CCcceEEEEEecCCCccceeccCChHHHHHHHHh-CceEEcCCCC-CCCeEEEEcCHHHHHHHHHHHHHHHHhhh
Q psy4141 77 VPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQT-NTYIVTPSRD-KEPVFEVTGAPDSVEIARQEIESHIIRRT 149 (353)
Q Consensus 77 ~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~T-ga~I~ip~~~-~e~~v~I~G~~e~V~~A~~~I~~~i~~r~ 149 (353)
+...++..|.||.++++.|||++|++||+|+++| ||+|.||.+. ..+.|+|.|+.++|++|+++|++++.+..
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 4556899999999999999999999999999999 9999999764 34689999999999999999999998743
No 31
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.34 E-value=2.4e-13 Score=99.78 Aligned_cols=54 Identities=26% Similarity=0.644 Sum_probs=50.2
Q ss_pred CCcccccccccccccEEe--CCCCHhhhHHhHHHHhccCCCCCCcccccccceecc
Q psy4141 299 GSRQCYLCNDREVTHALI--PCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~~ll--pCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~ 352 (353)
....|.||++.+.+++++ ||||.+||..|+.+++.....||+||+++..+++||
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence 457899999999999888 999998999999999887889999999999999998
No 32
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.34 E-value=2.8e-13 Score=99.75 Aligned_cols=55 Identities=24% Similarity=0.660 Sum_probs=50.9
Q ss_pred CCCcccccccccccccEEe--CCCCHhhhHHhHHHHhccCCCCCCcccccccceecc
Q psy4141 298 SGSRQCYLCNDREVTHALI--PCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~ll--pCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~ 352 (353)
.++..|.||++.+.+++++ ||||.+||..|+.+|+.....||+||+++.+++++|
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~ 62 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence 3567899999999999988 999998999999999988889999999999999997
No 33
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=9.6e-13 Score=98.06 Aligned_cols=53 Identities=30% Similarity=0.818 Sum_probs=48.4
Q ss_pred CCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceeccC
Q psy4141 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRIIS 353 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~~ 353 (353)
..+...|.||++.+.+++++||||.+||..|+..+ ..||+||.++...+++|.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeec
Confidence 34568999999999999999999999999999974 899999999999999983
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.23 E-value=6.1e-12 Score=110.57 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=64.0
Q ss_pred CcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC------CCCCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 78 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR------DKEPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 78 ~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~------~~e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
++.++.+|.||.+++|.||||+|++||+|+++|||+|.++.. ..++.|+|+|++++|++|+.+|.+++.+.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 456899999999999999999999999999999999998764 23578999999999999999999998763
No 35
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=106.97 Aligned_cols=69 Identities=23% Similarity=0.385 Sum_probs=62.3
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC-----CCCeEEEEcCHHHHHHHHHHHHHHHHhhh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD-----KEPVFEVTGAPDSVEIARQEIESHIIRRT 149 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-----~e~~v~I~G~~e~V~~A~~~I~~~i~~r~ 149 (353)
.+.+|.||.+++|.||||+|++||+|+++|||+|.++.+. .++.|+|+|++++|++|+.+|.+++.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhcc
Confidence 6789999999999999999999999999999999886542 35799999999999999999999988744
No 36
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.21 E-value=1.3e-11 Score=106.87 Aligned_cols=68 Identities=24% Similarity=0.382 Sum_probs=62.9
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC----CCCCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR----DKEPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~----~~e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
.+++|.||.+.+|.||||+|++||+|+++|||+|.++.+ ..++.|+|+|+++++.+|+.+|.+++.+.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEE 74 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 688999999999999999999999999999999999874 24678999999999999999999999875
No 37
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.21 E-value=9.1e-12 Score=109.12 Aligned_cols=70 Identities=29% Similarity=0.439 Sum_probs=63.2
Q ss_pred ceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC---CCCCeEEEEcCHHHHHHHHHHHHHHHHhhh
Q psy4141 80 HVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR---DKEPVFEVTGAPDSVEIARQEIESHIIRRT 149 (353)
Q Consensus 80 ~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~---~~e~~v~I~G~~e~V~~A~~~I~~~i~~r~ 149 (353)
..+.+|.||.+++|.||||+|++||+|+++|||+|.+... ..++.|+|+|++++|++|+.+|.+++.+..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQ 74 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999999999999999999999999998753 235789999999999999999999998753
No 38
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.19 E-value=3.3e-12 Score=96.55 Aligned_cols=52 Identities=33% Similarity=0.890 Sum_probs=48.3
Q ss_pred CCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceecc
Q psy4141 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~ 352 (353)
+.++..|.||++.+.+++++||||.+||..|+.+| ..||+||.++...+++|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECB
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEe
Confidence 34568999999999999999999999999999997 89999999999999987
No 39
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.4e-11 Score=90.74 Aligned_cols=50 Identities=24% Similarity=0.641 Sum_probs=45.4
Q ss_pred CCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
..+...|.||++.+.+++.++|||. ||..|+.+|......||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3456899999999999999999999 9999999998888899999999864
No 40
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.16 E-value=5.9e-12 Score=96.51 Aligned_cols=51 Identities=29% Similarity=0.879 Sum_probs=47.3
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceecc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~ 352 (353)
.++..|.||++.+.+++++||||.+||..|+..+ ..||+||.++...+++|
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCeEEEE
Confidence 4567899999999999999999999999999987 59999999999999987
No 41
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.16 E-value=2e-11 Score=105.32 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=63.6
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC-CCCCeEEEEcCHHHHHHHHHHHHHHHHhhh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR-DKEPVFEVTGAPDSVEIARQEIESHIIRRT 149 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~-~~e~~v~I~G~~e~V~~A~~~I~~~i~~r~ 149 (353)
.+.+|.||.+.+|.||||+|++||+|+++|||+|.++.. ..++.|+|+|++++|++|+.+|.+++.+..
T Consensus 5 ~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999999999999875 346799999999999999999999988753
No 42
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=6.4e-12 Score=95.09 Aligned_cols=51 Identities=33% Similarity=0.878 Sum_probs=47.0
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceecc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~ 352 (353)
.++..|.||++.+.+++++||||.+||..|+.++ ..||+||.++...++||
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEe
Confidence 4567899999999999999999999999999874 89999999999999987
No 43
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.5e-11 Score=91.44 Aligned_cols=53 Identities=21% Similarity=0.534 Sum_probs=46.9
Q ss_pred CCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccc
Q psy4141 295 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQA 348 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~ 348 (353)
+...+...|.||++.+.++++++|||. ||..|+.+|+.....||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred ccCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCcccccc
Confidence 344567899999999999999999999 99999999998888999999998643
No 44
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=89.20 Aligned_cols=52 Identities=35% Similarity=0.715 Sum_probs=45.8
Q ss_pred CCCCCCccccccccccccc-------EEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 295 GSISGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~-------~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
....+...|.||++.+.++ ++++|||. ||..|+.+|+.....||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3456678999999998876 88999998 9999999999888899999998864
No 45
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=4e-11 Score=92.76 Aligned_cols=53 Identities=43% Similarity=0.654 Sum_probs=49.4
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAD 54 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~ 54 (353)
.||||+|++||+|+++|||+|+++..+++++++|+|+++++++|+.+|.+++.
T Consensus 23 ~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 23 LVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp HHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred eeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 37999999999999999999999987778999999999999999999999755
No 46
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.8e-11 Score=89.31 Aligned_cols=54 Identities=26% Similarity=0.661 Sum_probs=48.0
Q ss_pred CCCCCCCcccccccccccccEEe-CCCCHhhhHHhHHHHhccCCCCCCcccccccc
Q psy4141 294 SGSISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQA 348 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~ 348 (353)
.+.+.+...|.||++.+.+++.+ +|||. ||..|+.+|+.....||+||.++...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 9 LSELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred HhhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 34567789999999999999987 99999 99999999998888999999998653
No 47
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=1.4e-10 Score=86.52 Aligned_cols=52 Identities=29% Similarity=0.689 Sum_probs=46.0
Q ss_pred CCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc---CCCCCCccccccc
Q psy4141 295 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF---DRTCPMCRVPVNQ 347 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~---~~~CP~Cr~~i~~ 347 (353)
+.+.+...|.||++.+.+++.++|||. ||..|+..|+.. ...||+||.++..
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 456677999999999999999999999 999999999863 6689999998864
No 48
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.08 E-value=1.1e-10 Score=89.40 Aligned_cols=54 Identities=26% Similarity=0.588 Sum_probs=47.5
Q ss_pred CCCCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc------CCCCCCccccccc
Q psy4141 293 PSGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF------DRTCPMCRVPVNQ 347 (353)
Q Consensus 293 ~~~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~------~~~CP~Cr~~i~~ 347 (353)
..+.+.+...|.||++.+.++++++|||. ||..|+..|+.. ...||+||..+..
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 34456678999999999999999999999 999999999887 6789999999863
No 49
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.6e-11 Score=88.68 Aligned_cols=55 Identities=29% Similarity=0.862 Sum_probs=48.3
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceecc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~ 352 (353)
.+.+...|.||++.+.+ +++||||. ||..|+.+|......||+||.++.....+|
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 44567899999999999 88999999 999999999888899999999998765554
No 50
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.07 E-value=4.5e-11 Score=88.74 Aligned_cols=54 Identities=35% Similarity=0.726 Sum_probs=46.7
Q ss_pred CCCccccccccccccc-------EEeCCCCHhhhHHhHHHHhccCCCCCCccccccc--ceecc
Q psy4141 298 SGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ--AMRII 352 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~-------~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~--~~ri~ 352 (353)
.++..|.||++.+.++ ++++|||. ||..|+.+|+.....||+||.++.. +.++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 4568999999998887 88999999 9999999999888899999999863 45554
No 51
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.07 E-value=9.7e-11 Score=113.89 Aligned_cols=67 Identities=25% Similarity=0.358 Sum_probs=61.4
Q ss_pred CcceEEEEEecCCCccceeccCC--hHHHHHHHHhCceEEcCCCC--------CCCeEEEEcCHHHHHHHHHHHHHH
Q psy4141 78 PGHVTIEVRVPYKVVGLVVGPKG--ATIKRIQHQTNTYIVTPSRD--------KEPVFEVTGAPDSVEIARQEIESH 144 (353)
Q Consensus 78 ~~~~t~~v~VP~~~vG~IIGkgG--~tIk~Iq~~Tga~I~ip~~~--------~e~~v~I~G~~e~V~~A~~~I~~~ 144 (353)
...+|.++.||..+|++|||||| ++|++|+++|||+|.||.++ ....|+|+|.+++|++|+++|.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 45799999999999999999999 99999999999999999764 235899999999999999999874
No 52
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.07 E-value=6.2e-11 Score=89.27 Aligned_cols=53 Identities=28% Similarity=0.701 Sum_probs=46.5
Q ss_pred CCCCCCCcccccccccccccEEeC-CCCHhhhHHhHHHHhccC--CCCCCccccccc
Q psy4141 294 SGSISGSRQCYLCNDREVTHALIP-CGHNFFCSECAERTCDFD--RTCPMCRVPVNQ 347 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~~~llp-CgH~~fC~~C~~~~~~~~--~~CP~Cr~~i~~ 347 (353)
.+.+.++..|.||++.+.+++.++ |||. ||..|+.+|+... ..||+||.++..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 345667899999999999999999 9999 9999999999863 789999998654
No 53
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=5.3e-11 Score=90.24 Aligned_cols=53 Identities=23% Similarity=0.644 Sum_probs=46.7
Q ss_pred CCCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-------CCCCCCccccccc
Q psy4141 294 SGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-------DRTCPMCRVPVNQ 347 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-------~~~CP~Cr~~i~~ 347 (353)
.+.+.++..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||.++..
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred HhhcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4456778999999999999999999999 999999999876 5689999998853
No 54
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.04 E-value=6.5e-11 Score=99.93 Aligned_cols=49 Identities=27% Similarity=0.720 Sum_probs=44.9
Q ss_pred CCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccc
Q psy4141 299 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQA 348 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~ 348 (353)
++..|.||++.+.+++.+||||. ||..|+..|+.....||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 45789999999999999999998 99999999998889999999998653
No 55
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=89.32 Aligned_cols=52 Identities=23% Similarity=0.630 Sum_probs=45.8
Q ss_pred CCCCCCCcccccccccccc----cEEeCCCCHhhhHHhHHHHhccC---CCCCCcccccc
Q psy4141 294 SGSISGSRQCYLCNDREVT----HALIPCGHNFFCSECAERTCDFD---RTCPMCRVPVN 346 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~----~~llpCgH~~fC~~C~~~~~~~~---~~CP~Cr~~i~ 346 (353)
.+.+.+...|.||++.+.+ +++++|||. ||..|+.+|+... ..||+||.++.
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 9 LDALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hhhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3456677999999999998 999999999 9999999998874 78999999874
No 56
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.04 E-value=1.4e-10 Score=87.40 Aligned_cols=54 Identities=17% Similarity=0.311 Sum_probs=49.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-CcCeEEEecCHHHHHHHHHHHHHHHhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-EEPVFVVTGRKEDVARAKREILSAADH 55 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-e~~vv~I~G~~e~v~~Ak~~I~~i~~~ 55 (353)
.||||+|++||+|+++|||+|++++.+ .++++.|+|+++++.+|+.+|.+++++
T Consensus 18 ~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 18 SIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999775 468999999999999999999999875
No 57
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.03 E-value=1e-10 Score=91.74 Aligned_cols=51 Identities=25% Similarity=0.570 Sum_probs=44.6
Q ss_pred CCCCCcccccccccccc---cEEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVT---HALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~---~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
...++..|.||++.+.. +..+||+|. ||..|+..|+.....||+||..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 44567899999998776 777899999 9999999999888899999998764
No 58
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=85.34 Aligned_cols=51 Identities=20% Similarity=0.559 Sum_probs=45.3
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+.++..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||.++..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 45567899999999999999999999 999999999954 7789999998864
No 59
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.03 E-value=8.6e-11 Score=85.23 Aligned_cols=53 Identities=32% Similarity=0.671 Sum_probs=46.2
Q ss_pred CCccccccccccccc-------EEeCCCCHhhhHHhHHHHhccCCCCCCcccccc--cceecc
Q psy4141 299 GSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN--QAMRII 352 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~-------~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~--~~~ri~ 352 (353)
++..|.||++.+.++ ++++|||. ||..|+.+|......||+||.++. .+.++|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 457899999998776 78999999 999999999988889999999987 456655
No 60
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.01 E-value=1.6e-10 Score=87.50 Aligned_cols=54 Identities=20% Similarity=0.577 Sum_probs=44.9
Q ss_pred CCCCCCCccccccccccccc---EEeCCCCHhhhHHhHHHHhccCCCCCCcccccccc
Q psy4141 294 SGSISGSRQCYLCNDREVTH---ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQA 348 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~~---~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~ 348 (353)
.+...+...|.||++.+... ..++|+|. ||..|+.+|+.....||+||..+...
T Consensus 9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 9 EEHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp CTTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred cccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 34456678999999887543 56799999 99999999998888999999998753
No 61
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.01 E-value=5.3e-10 Score=88.96 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=51.7
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCC----cCeEEEecCHHHHHHHHHHHHHHHhhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGE----EPVFVVTGRKEDVARAKREILSAADHFSA 58 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e----~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~ 58 (353)
.||||+|.+|++|+++|||+|+||+.++ ++.|+|+|.++++++|+.+|..++.+...
T Consensus 30 ~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 30 KIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp HHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999999999999998763 47899999999999999999999987654
No 62
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=89.89 Aligned_cols=52 Identities=29% Similarity=0.727 Sum_probs=45.8
Q ss_pred CCCCCCCcccccccccccccEEeC-CCCHhhhHHhHHHHhcc--CCCCCCcccccc
Q psy4141 294 SGSISGSRQCYLCNDREVTHALIP-CGHNFFCSECAERTCDF--DRTCPMCRVPVN 346 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~~~llp-CgH~~fC~~C~~~~~~~--~~~CP~Cr~~i~ 346 (353)
.+.+.++..|.||++.+.+++.+| |||. ||..|+..|+.. ...||+||.++.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 345667899999999999999999 9999 999999999875 469999999873
No 63
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.00 E-value=1.8e-10 Score=88.02 Aligned_cols=55 Identities=25% Similarity=0.570 Sum_probs=44.8
Q ss_pred CCCCCCccccccccccc--ccEEeC--CCCHhhhHHhHHHHhcc-CCCCCCccccccccee
Q psy4141 295 GSISGSRQCYLCNDREV--THALIP--CGHNFFCSECAERTCDF-DRTCPMCRVPVNQAMR 350 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~--~~~llp--CgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~~~r 350 (353)
..++++..|+||++... +.+++| |||+ ||..|+.++|.. ...||+||.++.....
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 45677899999999773 455666 9999 999999999866 6789999999876433
No 64
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.00 E-value=2.5e-10 Score=86.46 Aligned_cols=51 Identities=12% Similarity=0.274 Sum_probs=46.3
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+.++..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||.++..
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred CCcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 45667999999999999999999999 999999999987 7899999998853
No 65
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.00 E-value=1.8e-10 Score=90.18 Aligned_cols=64 Identities=23% Similarity=0.363 Sum_probs=57.1
Q ss_pred CcceEEEEEecCCCccceeccCChHHHHHHHHhCce-EEcCCCCCCCeEEEEc-CHHHHHHHHHHHHH
Q psy4141 78 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTY-IVTPSRDKEPVFEVTG-APDSVEIARQEIES 143 (353)
Q Consensus 78 ~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~-I~ip~~~~e~~v~I~G-~~e~V~~A~~~I~~ 143 (353)
...+..+|.||.+++|.|||++|++||+|+++||++ |.+. +++..|+|.| +.+++++|+++|+.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~--eddG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELD--EDTGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEE--TTTTEEEEEESSHHHHHHHHHHHSC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEE--cCCCEEEEEECCHHHHHHHHHHHHh
Confidence 345889999999999999999999999999999998 9885 3347899999 79999999999964
No 66
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=1.8e-10 Score=88.08 Aligned_cols=52 Identities=23% Similarity=0.685 Sum_probs=46.4
Q ss_pred CCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc------CCCCCCccccccc
Q psy4141 295 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF------DRTCPMCRVPVNQ 347 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~------~~~CP~Cr~~i~~ 347 (353)
..+.+...|.||++.+.+++.++|||. ||..|+..|+.. ...||+||..+..
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 455677899999999999999999999 999999999876 7899999998863
No 67
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.99 E-value=1.3e-10 Score=85.62 Aligned_cols=52 Identities=31% Similarity=0.766 Sum_probs=46.2
Q ss_pred CCccccccccccccc-EEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceec
Q psy4141 299 GSRQCYLCNDREVTH-ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 351 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~-~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri 351 (353)
+...|.||++.+.++ +.+||||. ||..|+.+|......||+||.++...++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECC
T ss_pred CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhc
Confidence 457899999999885 78999999 99999999988889999999999877654
No 68
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.2e-10 Score=85.94 Aligned_cols=56 Identities=23% Similarity=0.614 Sum_probs=46.2
Q ss_pred CCCCCCcccccccccccc---cEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceec
Q psy4141 295 GSISGSRQCYLCNDREVT---HALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 351 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~---~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri 351 (353)
..+.++..|.||++.+.. ...+||+|. ||..|+.+|+.....||+||.++..+.++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccccc
Confidence 345567899999999754 344599999 99999999998888999999999876554
No 69
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=4.7e-10 Score=82.91 Aligned_cols=54 Identities=22% Similarity=0.554 Sum_probs=45.1
Q ss_pred CCCCCcccccccccc---cccEEeCCCCHhhhHHhHHHHhccCCCCCCccccccccee
Q psy4141 296 SISGSRQCYLCNDRE---VTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMR 350 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~---~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~r 350 (353)
...+...|.||++.+ ..++.+||+|. ||..|+.+|+.....||+||..+...+.
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 345568899998876 35677999999 9999999999888899999999876553
No 70
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=8.3e-10 Score=87.49 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=51.7
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCC--cCeEEEecCHHHHHHHHHHHHHHHhhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGE--EPVFVVTGRKEDVARAKREILSAADHFSA 58 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e--~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~ 58 (353)
.|||++|.+||+|+++|||+|++|+.++ ++.|.|+|.++++++|+.+|..+++++.+
T Consensus 30 ~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 30 RIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp HHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999998763 46899999999999999999999988754
No 71
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=6.4e-10 Score=80.75 Aligned_cols=46 Identities=30% Similarity=0.718 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc---CCCCCCc
Q psy4141 295 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF---DRTCPMC 341 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~---~~~CP~C 341 (353)
+.+.++..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 456678999999999999999999999 999999999973 5689998
No 72
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=3.4e-10 Score=85.22 Aligned_cols=51 Identities=27% Similarity=0.696 Sum_probs=43.7
Q ss_pred CCCCCccccccccccccc---EEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTH---ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~---~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
...+...|.||++.+... ..+||+|. ||..|+.+|+.....||+||+.+..
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 345668999999987665 77899999 9999999999888899999998754
No 73
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.94 E-value=3.9e-10 Score=79.51 Aligned_cols=48 Identities=31% Similarity=0.767 Sum_probs=42.2
Q ss_pred CCCcccccccccccc---cEEeC-CCCHhhhHHhHHHHhccCCCCCCcccccc
Q psy4141 298 SGSRQCYLCNDREVT---HALIP-CGHNFFCSECAERTCDFDRTCPMCRVPVN 346 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~---~~llp-CgH~~fC~~C~~~~~~~~~~CP~Cr~~i~ 346 (353)
++...|.||++.+.. +..++ |+|. ||..|+.+|......||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 456889999999877 67777 9999 999999999988889999998763
No 74
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.93 E-value=5.4e-10 Score=83.76 Aligned_cols=52 Identities=25% Similarity=0.471 Sum_probs=47.1
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-CcCeEEEecCHHHHHHHHHHHHHHH
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-EEPVFVVTGRKEDVARAKREILSAA 53 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-e~~vv~I~G~~e~v~~Ak~~I~~i~ 53 (353)
.|||++|.+|++|+++|||+|++|+.+ .++.|.|+|..+++++|+.+|.+++
T Consensus 18 ~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 18 HLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp HHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred hhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 489999999999999999999999876 3468999999999999999998764
No 75
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.92 E-value=9.4e-10 Score=84.69 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=49.9
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC---CcCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~---e~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.||||+|++||+|+++|||+|++++.. .+++++|+|+++++++|+.+|.+++++.
T Consensus 20 ~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 20 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp GGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999998642 3589999999999999999999999875
No 76
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8e-10 Score=78.58 Aligned_cols=46 Identities=33% Similarity=0.809 Sum_probs=40.3
Q ss_pred CCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhc---cCCCCCCc
Q psy4141 295 GSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCD---FDRTCPMC 341 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~---~~~~CP~C 341 (353)
+.+.+...|.||++.+.+++.++|||. ||..|+.+|+. ....||+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 10 ENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred hccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 445667899999999999999999999 99999999955 36789998
No 77
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.91 E-value=4e-10 Score=79.38 Aligned_cols=47 Identities=32% Similarity=0.730 Sum_probs=41.8
Q ss_pred CCcccccccccccc----cEEeCCCCHhhhHHhHHHHhccCCCCCCcccccc
Q psy4141 299 GSRQCYLCNDREVT----HALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 346 (353)
Q Consensus 299 ~~~~C~IC~~~~~~----~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~ 346 (353)
++..|.||++.+.+ +++++|+|. ||..|+.+|......||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999998855 788999998 999999999988899999999875
No 78
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=84.70 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=47.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCC-----cCeEEEecCHHHHHHHHHHHHHHHh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGE-----EPVFVVTGRKEDVARAKREILSAAD 54 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e-----~~vv~I~G~~e~v~~Ak~~I~~i~~ 54 (353)
.||||+|++||+|+++|||+|+++..+. +++|.|+|+++++++|+.+|.+++.
T Consensus 27 ~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 27 LVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp HHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred eeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999987542 5779999999999999999999875
No 79
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.90 E-value=4.3e-10 Score=92.95 Aligned_cols=49 Identities=27% Similarity=0.661 Sum_probs=44.5
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+...|.||++.+.+++.+||||. ||..|+..|+.. ...||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 456889999999999999999999 999999999986 5699999999865
No 80
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.90 E-value=1.6e-09 Score=85.23 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=50.0
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC---CcCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~---e~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.||||+|++||+|+++|||+|+++... .+++|+|+|++++|++|+.+|.+++++.
T Consensus 28 ~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 28 FIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp HHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred eeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999753 3589999999999999999999999875
No 81
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=1.9e-09 Score=90.38 Aligned_cols=69 Identities=29% Similarity=0.469 Sum_probs=59.1
Q ss_pred cceEEEEEecCC------CccceeccCChHHHHHHHHhCceEEcCCC-------------------CCCCeEEEEc-CHH
Q psy4141 79 GHVTIEVRVPYK------VVGLVVGPKGATIKRIQHQTNTYIVTPSR-------------------DKEPVFEVTG-APD 132 (353)
Q Consensus 79 ~~~t~~v~VP~~------~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~-------------------~~e~~v~I~G-~~e 132 (353)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+ +.+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 358899999987 88999999999999999999999988542 1134788999 489
Q ss_pred HHHHHHHHHHHHHHh
Q psy4141 133 SVEIARQEIESHIIR 147 (353)
Q Consensus 133 ~V~~A~~~I~~~i~~ 147 (353)
.+++|+++|++++..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999875
No 82
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.89 E-value=2.1e-09 Score=85.55 Aligned_cols=52 Identities=13% Similarity=0.101 Sum_probs=47.1
Q ss_pred CCCCCCcccccccccccccEEeCCC-CHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 295 GSISGSRQCYLCNDREVTHALIPCG-HNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~~llpCg-H~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
..+.++..|+||++...++|.++|| |. ||+.|+.+|+.....||+||.++..
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3456679999999999999999999 99 9999999999888899999999864
No 83
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.89 E-value=1.1e-09 Score=82.82 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=47.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC------CcCeEEEecCHHHHHHHHHHHHHHHhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAADH 55 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~------e~~vv~I~G~~e~v~~Ak~~I~~i~~~ 55 (353)
.||||+|++||+|+++|||+|+++..+ .++.|.|+|+++++.+|+.+|.+++.+
T Consensus 16 ~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 16 AILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp HHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 479999999999999999999998752 358999999999999999999998753
No 84
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.89 E-value=3.7e-10 Score=90.05 Aligned_cols=50 Identities=26% Similarity=0.648 Sum_probs=45.4
Q ss_pred CCCCcccccccccccccEE-eCCCCHhhhHHhHHHHhccC-CCCCCccccccc
Q psy4141 297 ISGSRQCYLCNDREVTHAL-IPCGHNFFCSECAERTCDFD-RTCPMCRVPVNQ 347 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~l-lpCgH~~fC~~C~~~~~~~~-~~CP~Cr~~i~~ 347 (353)
+.++..|.||++.+.+++. ++|||. ||..|+.+|+... ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4567899999999999999 999999 9999999999885 799999999853
No 85
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.89 E-value=9.3e-10 Score=86.97 Aligned_cols=55 Identities=22% Similarity=0.273 Sum_probs=49.9
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-----CcCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-----EEPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-----e~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.||||+|++||+|+++|||+|++++.+ .+++|+|+|++++|++|+.+|.+++++.
T Consensus 28 ~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 28 LVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp HHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred eEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 489999999999999999999998754 3688999999999999999999998764
No 86
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.89 E-value=3.5e-10 Score=92.20 Aligned_cols=51 Identities=29% Similarity=0.696 Sum_probs=45.8
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
...++..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||..+..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 44567999999999999999999999 999999999877 7799999998763
No 87
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=1.8e-09 Score=87.41 Aligned_cols=55 Identities=20% Similarity=0.341 Sum_probs=49.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC------CcCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~------e~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.||||+|++||+|+++|||+|+|.+.. .+++|+|+|++++|++|+.+|.+++++.
T Consensus 20 ~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 20 LVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp TTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred ccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 489999999999999999999998753 2489999999999999999999998864
No 88
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=6.1e-10 Score=81.45 Aligned_cols=48 Identities=23% Similarity=0.652 Sum_probs=40.6
Q ss_pred CCcccccccc-ccccc----EEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 299 GSRQCYLCND-REVTH----ALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 299 ~~~~C~IC~~-~~~~~----~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
++..|.||++ .+.++ ++++|||. ||..|+.+|+.. ...||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3578999999 66666 57899999 999999999766 6789999999864
No 89
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.88 E-value=1.4e-09 Score=82.36 Aligned_cols=54 Identities=22% Similarity=0.242 Sum_probs=48.6
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC---CcCeEEEecCHHHHHHHHHHHHHHHhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADH 55 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~---e~~vv~I~G~~e~v~~Ak~~I~~i~~~ 55 (353)
.||||+|++|++|+++|||+|++++.. .+++|.|+|+++++.+|+.+|.+++++
T Consensus 18 ~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 18 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred eEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 479999999999999999999998632 368999999999999999999999864
No 90
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.88 E-value=1.2e-09 Score=85.50 Aligned_cols=55 Identities=20% Similarity=0.400 Sum_probs=49.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC---CcCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~---e~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.||||+|++||+|+++|||+|+++... .+++|+|+|+++++++|+.+|.+++++.
T Consensus 27 ~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 27 SIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp HHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 479999999999999999999998642 3689999999999999999999999875
No 91
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.88 E-value=2.1e-09 Score=83.60 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=51.7
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC------CcCeEEEecCHHHHHHHHHHHHHHHhhhhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG------EEPVFVVTGRKEDVARAKREILSAADHFSALR 60 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~------e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~ 60 (353)
.||||+|.+|++|+++|||+|+++..+ .++.|+|+|+++++.+|+.+|.+++.+....+
T Consensus 16 ~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~r 80 (87)
T 1ec6_A 16 AILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQGVR 80 (87)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc
Confidence 479999999999999999999999753 35899999999999999999999988765433
No 92
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=86.84 Aligned_cols=56 Identities=21% Similarity=0.234 Sum_probs=50.1
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC---CcCeEEEecCHHHHHHHHHHHHHHHhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADHFS 57 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~---e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~ 57 (353)
.||||+|++||+|+++|+|+|+|+... .+++|+|+|+++++++|+.+|.+++++..
T Consensus 24 ~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 24 VVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp HHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 479999999999999999999998543 35789999999999999999999998753
No 93
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.87 E-value=1.9e-09 Score=85.14 Aligned_cols=56 Identities=29% Similarity=0.415 Sum_probs=50.4
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCC-cCeEEEecCHHHHHHHHHHHHHHHhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAADHFS 57 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e-~~vv~I~G~~e~v~~Ak~~I~~i~~~~~ 57 (353)
.||||+|.+||+|+++|||+|++|..++ ++.|+|+|.++++++|+.+|.+++++..
T Consensus 30 ~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 30 FVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp HHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 3799999999999999999999997543 5789999999999999999999988753
No 94
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.86 E-value=3e-09 Score=85.62 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=51.3
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCCc-CeEEEecCHHHHHHHHHHHHHHHhhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGEE-PVFVVTGRKEDVARAKREILSAADHFSA 58 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e~-~vv~I~G~~e~v~~Ak~~I~~i~~~~~~ 58 (353)
.|||++|.+||+|+++|||+|++|+.+++ +.|+|+|..+++++|+.+|..++++...
T Consensus 30 ~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e~ 87 (104)
T 2ctk_A 30 YVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKELQA 87 (104)
T ss_dssp HHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhHHH
Confidence 48999999999999999999999987633 5899999999999999999999887654
No 95
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.86 E-value=9e-10 Score=88.80 Aligned_cols=50 Identities=30% Similarity=0.740 Sum_probs=45.9
Q ss_pred CCCCcccccccccccccEEe-CCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 297 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
+.++..|.||++.+.+++.+ +|||. ||..|+..|+.....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 45678999999999999998 99999 9999999999888999999999864
No 96
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=5.9e-09 Score=85.79 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=56.2
Q ss_pred ceEEEEEecCC-------CccceeccCChHHHHHHHHhCceEEcCCCC-------------CCCeEEEEc-CHHHHHHHH
Q psy4141 80 HVTIEVRVPYK-------VVGLVVGPKGATIKRIQHQTNTYIVTPSRD-------------KEPVFEVTG-APDSVEIAR 138 (353)
Q Consensus 80 ~~t~~v~VP~~-------~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~-------------~e~~v~I~G-~~e~V~~A~ 138 (353)
..+.+|.||-+ ++|.|||++|.+||+|+++|||+|.|-.+. ++-.|.|.+ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 36677777654 789999999999999999999999885331 224788887 599999999
Q ss_pred HHHHHHHHh
Q psy4141 139 QEIESHIIR 147 (353)
Q Consensus 139 ~~I~~~i~~ 147 (353)
++|++++..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999886
No 97
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.85 E-value=4.1e-10 Score=109.01 Aligned_cols=52 Identities=40% Similarity=0.965 Sum_probs=48.6
Q ss_pred CCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceecc
Q psy4141 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri~ 352 (353)
+.++..|.||++.+.+++++||||.+||..|+..+ ..||+||.++...+++|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~ 343 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTF 343 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEee
Confidence 45678999999999999999999999999999987 79999999999999997
No 98
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.85 E-value=2.3e-09 Score=86.25 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=51.6
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-----CcCeEEEecCHHHHHHHHHHHHHHHhhhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-----EEPVFVVTGRKEDVARAKREILSAADHFSAL 59 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-----e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~ 59 (353)
.||||+|++||+|+++|||+|+++... ++++|+|+|+.+++++|+.+|.+++++...+
T Consensus 28 ~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~~~ 90 (104)
T 1we8_A 28 RIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEEL 90 (104)
T ss_dssp HHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhChHH
Confidence 489999999999999999999998654 3689999999999999999999999866553
No 99
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=2.5e-09 Score=82.89 Aligned_cols=51 Identities=14% Similarity=0.038 Sum_probs=46.5
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
.+.++..|+||++...+++.++|||+ ||+.|+.+|+.....||+||.++..
T Consensus 10 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 10 DAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp TCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred cCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 34567999999999999999999999 9999999999888899999998864
No 100
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.84 E-value=9.9e-10 Score=87.11 Aligned_cols=50 Identities=30% Similarity=0.736 Sum_probs=45.3
Q ss_pred CCCCcccccccccccccEEe-CCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 297 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
+.+...|.||++.+.+++.+ +|||. ||..|+.+|+.....||+||..+..
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45568999999999999988 99999 9999999999888899999998864
No 101
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.83 E-value=2.1e-09 Score=82.64 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=48.2
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC---CcCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG---EEPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~---e~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.||||+|++||+|+++|||+|++++.. .+++|.|+|+++++++|+.+|.+++.+.
T Consensus 19 ~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 19 CIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp HHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred ceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999998632 3689999999999999999999998764
No 102
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.81 E-value=2.4e-09 Score=85.61 Aligned_cols=51 Identities=14% Similarity=0.051 Sum_probs=46.5
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
.+.++..|+||++...+++.++|||+ ||+.|+.+|+.....||+||.++..
T Consensus 25 ~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 25 DAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp SCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 34567999999999999999999999 9999999999888899999999864
No 103
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.81 E-value=1.4e-09 Score=93.29 Aligned_cols=49 Identities=29% Similarity=0.617 Sum_probs=44.4
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+...|.||++.+.+++.+||||. ||..|+..|+.. ...||+||.++..
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 456899999999999999999999 999999999987 4589999999875
No 104
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=5.7e-10 Score=79.52 Aligned_cols=46 Identities=30% Similarity=0.745 Sum_probs=40.7
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
.+...|.||++.+.+++.+||||. ||..|+..+ ...||+||..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~---~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccC---CCCCCcCCcEeec
Confidence 456889999999999999999999 999998873 5789999998764
No 105
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=3.1e-09 Score=87.08 Aligned_cols=51 Identities=22% Similarity=0.547 Sum_probs=45.9
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+.+...|.||++.+.+++.++|||. ||..|+..|+.. ...||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 45677899999999999999999999 999999999887 4599999999865
No 106
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.76 E-value=2.1e-09 Score=93.22 Aligned_cols=52 Identities=25% Similarity=0.597 Sum_probs=45.7
Q ss_pred CCCCCCcccccccccccccEEe-CCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 295 GSISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 295 ~~~~~~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
..+.+...|.||++.+.+++.+ +|||. ||..|+..|+.. ...||+||.++..
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3456678999999999999987 99999 999999999987 7889999998853
No 107
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.76 E-value=1.1e-08 Score=81.98 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=50.0
Q ss_pred eeecCCCchHHHHHHH-cCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHhhhhh
Q psy4141 2 KKISRSGCKIKALRAK-TNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSA 58 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~-Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~ 58 (353)
+|||++|++||+|+++ ++++|++|+ ++++|+|.|+++.|++|+.+|..+++++..
T Consensus 40 ~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 40 FIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp HHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 4899999999999997 599999997 467899999999999999999999988754
No 108
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.74 E-value=4e-09 Score=85.59 Aligned_cols=47 Identities=21% Similarity=0.530 Sum_probs=39.2
Q ss_pred CcccccccccccccE------------------EeCCCCHhhhHHhHHHHhc-----cCCCCCCccccccc
Q psy4141 300 SRQCYLCNDREVTHA------------------LIPCGHNFFCSECAERTCD-----FDRTCPMCRVPVNQ 347 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~------------------llpCgH~~fC~~C~~~~~~-----~~~~CP~Cr~~i~~ 347 (353)
+..|.||++.+..+. +++|+|. ||..|+..|+. ....||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 468999999985533 7899999 99999999984 36799999998754
No 109
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=1.7e-09 Score=87.28 Aligned_cols=49 Identities=20% Similarity=0.571 Sum_probs=43.3
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhccC---CCCCCccccccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFD---RTCPMCRVPVNQ 347 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~---~~CP~Cr~~i~~ 347 (353)
.+...|.||++.+.+++.++|||. ||..|+..|+... ..||+||.++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred cCCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 345789999999999999999999 9999999999863 489999998864
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.71 E-value=6.5e-09 Score=101.56 Aligned_cols=51 Identities=25% Similarity=0.720 Sum_probs=45.8
Q ss_pred CcccccccccccccEEeCCCCHhhhHHhHHHHhc-cCCCCCCcccccccceec
Q psy4141 300 SRQCYLCNDREVTHALIPCGHNFFCSECAERTCD-FDRTCPMCRVPVNQAMRI 351 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~-~~~~CP~Cr~~i~~~~ri 351 (353)
...|.||++...+++++||||. ||..|+..|.. ....||+||.++.....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 4799999999999999999999 99999999988 488999999999876544
No 111
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.70 E-value=1.9e-08 Score=79.56 Aligned_cols=55 Identities=27% Similarity=0.445 Sum_probs=50.1
Q ss_pred eeecCCCchHHHHHHHc-CceEEecCCCC-cCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKT-NTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~T-ga~I~ip~~~e-~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.|||++|.+|++|+++| |++|++|+.++ .+.|+|.|..++|++|+++|..++++.
T Consensus 30 ~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 30 SLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp HHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 47999999999999999 99999998763 368999999999999999999999875
No 112
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.70 E-value=2.2e-09 Score=91.08 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=44.2
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPV 345 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i 345 (353)
.+.++..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 45678999999999999999999999 999999999887 45899999965
No 113
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.68 E-value=6.4e-09 Score=85.91 Aligned_cols=49 Identities=37% Similarity=0.807 Sum_probs=44.4
Q ss_pred CCCccccccccccccc-------EEeCCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 298 SGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~-------~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
.++..|.||++.+.++ +.++|||. ||..|+.+|+.....||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3568999999999887 89999999 9999999999888899999999864
No 114
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.67 E-value=6.1e-09 Score=84.89 Aligned_cols=51 Identities=27% Similarity=0.591 Sum_probs=45.8
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+.++..|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||.++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 34567899999999999999999999 999999999987 7899999999864
No 115
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.3e-08 Score=77.86 Aligned_cols=46 Identities=20% Similarity=0.510 Sum_probs=38.1
Q ss_pred Ccccccccccccc--------------c-EEeCCCCHhhhHHhHHHHhccCCCCCCcccccc
Q psy4141 300 SRQCYLCNDREVT--------------H-ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN 346 (353)
Q Consensus 300 ~~~C~IC~~~~~~--------------~-~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~ 346 (353)
+..|.||++.+.. . ++.+|+|. ||..|+.+|+.....||+||+++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcc
Confidence 4668888887754 3 44469999 999999999998889999999875
No 116
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=5.4e-09 Score=85.54 Aligned_cols=47 Identities=26% Similarity=0.644 Sum_probs=42.9
Q ss_pred CCCCcccccccccccccEEe-CCCCHhhhHHhHHHHhccCCCCCCcccccc
Q psy4141 297 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVN 346 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~ 346 (353)
+.+...|.||++.+.+++.+ +|||. ||..|+..|+. ..||+||.++.
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred chhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 45678999999999999999 99999 99999999976 78999999884
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=2.3e-08 Score=92.72 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=43.5
Q ss_pred CCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 299 GSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
+...|+||++...++|.+||||+ ||..|+.+|+.. ...||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 46899999999999999999999 999999999987 4459999999864
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.56 E-value=2.1e-08 Score=82.75 Aligned_cols=54 Identities=35% Similarity=0.728 Sum_probs=46.6
Q ss_pred CCCccccccccccccc-------EEeCCCCHhhhHHhHHHHhccCCCCCCcccccc--cceecc
Q psy4141 298 SGSRQCYLCNDREVTH-------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPVN--QAMRII 352 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~-------~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~--~~~ri~ 352 (353)
.+...|.||++.+..+ +.++|||. ||..|+.+|+.....||+||..+. ++.++|
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4568899999998775 88999999 999999999988999999999986 355555
No 119
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.56 E-value=8.3e-08 Score=99.44 Aligned_cols=92 Identities=25% Similarity=0.321 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhhhh-hhhccCCCCCCCCCCCCCCCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCC
Q psy4141 42 VARAKREILSAADHFSA-LRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD 120 (353)
Q Consensus 42 v~~Ak~~I~~i~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~ 120 (353)
++.|++....+++.+.. +...+.. .....| ....|.||.+.+|.|||+||++||+|+++|||+|.|.
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~-------~~~~ap--~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~--- 603 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRAS-------RKENGP--VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV--- 603 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSS-------CCTTCC--EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-------hcccCC--eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---
Confidence 45566666666555443 2222111 122345 7889999999999999999999999999999999876
Q ss_pred CCCeEEEEcC-HHHHHHHHHHHHHHH
Q psy4141 121 KEPVFEVTGA-PDSVEIARQEIESHI 145 (353)
Q Consensus 121 ~e~~v~I~G~-~e~V~~A~~~I~~~i 145 (353)
++..|.|.|+ .+.+++|+++|++++
T Consensus 604 d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 604 DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 3468999996 689999999998765
No 120
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.54 E-value=6.9e-08 Score=87.65 Aligned_cols=64 Identities=27% Similarity=0.267 Sum_probs=57.7
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcC-----HHHHHHHHHHHHHHHH
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGA-----PDSVEIARQEIESHII 146 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~-----~e~V~~A~~~I~~~i~ 146 (353)
...+|.||.+.+|.|||++|++|+.|+++||++|.+..+ ++.|+|.|+ ++++++|+++|.+++.
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~--~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE--TGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT--TCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC--CCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 567999999999999999999999999999999998743 567999886 6999999999999873
No 121
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=4e-08 Score=77.38 Aligned_cols=47 Identities=19% Similarity=0.390 Sum_probs=41.5
Q ss_pred CCCCcccccccccccccEEeC-CCCHhhhHHhHHHHhccC------CCCCC--cccc
Q psy4141 297 ISGSRQCYLCNDREVTHALIP-CGHNFFCSECAERTCDFD------RTCPM--CRVP 344 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~llp-CgH~~fC~~C~~~~~~~~------~~CP~--Cr~~ 344 (353)
..++..|+||++.+.+++.++ |||+ ||..|+.+|+... ..||+ |+..
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 356789999999999999996 9999 9999999999863 58999 9865
No 122
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.50 E-value=9.8e-08 Score=80.50 Aligned_cols=66 Identities=23% Similarity=0.414 Sum_probs=52.2
Q ss_pred eEEEEEecC------CCccceeccCChHHHHHHHHhCceEEcCCCC--------------------CC-CeEEEEcC-HH
Q psy4141 81 VTIEVRVPY------KVVGLVVGPKGATIKRIQHQTNTYIVTPSRD--------------------KE-PVFEVTGA-PD 132 (353)
Q Consensus 81 ~t~~v~VP~------~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~--------------------~e-~~v~I~G~-~e 132 (353)
.+.+|.||. +++|+|||++|.++|+|+++|||+|.|-.+. .+ --|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 456677774 5599999999999999999999999886542 11 26889984 43
Q ss_pred -----HHHHHHHHHHHHHH
Q psy4141 133 -----SVEIARQEIESHII 146 (353)
Q Consensus 133 -----~V~~A~~~I~~~i~ 146 (353)
.+++|+++|++++.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78999999998875
No 123
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.48 E-value=7.5e-08 Score=77.67 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=38.7
Q ss_pred Cccccccccccccc------------------EEeCCCCHhhhHHhHHHHhccCCCCCCccccc
Q psy4141 300 SRQCYLCNDREVTH------------------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345 (353)
Q Consensus 300 ~~~C~IC~~~~~~~------------------~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i 345 (353)
+..|.||++.+... ++++|+|. ||..|+..|+.....||+||+.+
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 46799998876543 56899999 99999999998889999999985
No 124
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.48 E-value=5.7e-08 Score=84.36 Aligned_cols=51 Identities=22% Similarity=0.547 Sum_probs=45.9
Q ss_pred CCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 296 SISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 296 ~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+.+...|.||++.+.+++.++|||. ||..|+.+|+.. ...||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 45677999999999999999999999 999999999877 5599999998865
No 125
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.46 E-value=7.1e-08 Score=84.84 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=44.2
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQ 347 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~ 347 (353)
.+...|+||++...+||.+||||+ ||..|+..|+.. ...||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 456899999999999999999999 999999999987 4579999998864
No 126
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.36 E-value=1.9e-07 Score=79.27 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=48.9
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEc-CHHHHHHHHHHH
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTG-APDSVEIARQEI 141 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G-~~e~V~~A~~~I 141 (353)
++.++.||.+.+|.+||++|++|++|++++|+.|...+++.+ .+.+.| +|+.|.+|+.++
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~~~-~~i~~~~~p~~v~~~~~~l 64 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTC-TFHIYGEDQDAVKKARSFL 64 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETTTT-EEEEEESSHHHHHHHHHHH
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCCch-heeeccCCHHHHHHHHHhh
Confidence 688999999999999999999999999999966655544444 455555 699999998754
No 127
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.21 E-value=5.4e-07 Score=83.35 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=43.7
Q ss_pred CCCCcccccccccccccEEe-CCCCHhhhHHhHHHHhcc--CCCCCC--ccccccc
Q psy4141 297 ISGSRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDF--DRTCPM--CRVPVNQ 347 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~--~~~CP~--Cr~~i~~ 347 (353)
...+..|+||++.+.++|.. .|||+ ||..|+.+||.. ...||+ ||..+..
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 35678999999999999985 99999 999999999986 358999 9997753
No 128
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=1e-06 Score=67.38 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=40.4
Q ss_pred CCCcccccccccc--cccEEeCCC-----CHhhhHHhHHHHhcc--CCCCCCccccccc
Q psy4141 298 SGSRQCYLCNDRE--VTHALIPCG-----HNFFCSECAERTCDF--DRTCPMCRVPVNQ 347 (353)
Q Consensus 298 ~~~~~C~IC~~~~--~~~~llpCg-----H~~fC~~C~~~~~~~--~~~CP~Cr~~i~~ 347 (353)
.++..|.||++.+ .+.+++||. |. |+..|+.+|... ...||+||..+.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3457899999765 356778996 99 999999999887 3699999998854
No 129
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.16 E-value=2.3e-06 Score=75.90 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=57.4
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEE-----cCHHHHHHHHHHHHHHHH
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVT-----GAPDSVEIARQEIESHII 146 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~-----G~~e~V~~A~~~I~~~i~ 146 (353)
...++.||.+.+|.|||++|++++.|++++|++|.+.. .++.|+|. |+|.++.+|+++|.++..
T Consensus 4 ~~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 4 PRIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CCEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred cceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 34689999999999999999999999999999998864 46678888 999999999999988765
No 130
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.15 E-value=2.9e-07 Score=75.51 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=0.0
Q ss_pred ccccccccccccc------------------EEeCCCCHhhhHHhHHHHhccCCCCCCccccc
Q psy4141 301 RQCYLCNDREVTH------------------ALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345 (353)
Q Consensus 301 ~~C~IC~~~~~~~------------------~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i 345 (353)
..|.||++.+... ++++|+|. ||..|+.+|......||+||+++
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 5799999887542 23599999 99999999998888999999985
No 131
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=2.1e-06 Score=70.44 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=45.9
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-------------Cc-CeEEEecCHHHHHHHHHHHHHHHhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-------------EE-PVFVVTGRKEDVARAKREILSAADHFS 57 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-------------e~-~vv~I~G~~e~v~~Ak~~I~~i~~~~~ 57 (353)
.|||++|.+||+|+++|||+|.|-.++ ++ .+.+...+.+++++|+++|.+++....
T Consensus 32 ~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 32 KVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVH 101 (119)
T ss_dssp HHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHHHHHHHhhchH
Confidence 489999999999999999999996442 22 455555789999999999999987543
No 132
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.09 E-value=1.8e-06 Score=90.59 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=12.3
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcC-HHHHHHHHHHHHHHHHh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGA-PDSVEIARQEIESHIIR 147 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~-~e~V~~A~~~I~~~i~~ 147 (353)
....+.||.+.+|.|||+||++||+|+++||++|.+. ++..|.|.+. .+.+++|+++|..++.+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp C----------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 5678999999999999999999999999999999875 2456888885 88999999999988765
No 133
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.07 E-value=1e-06 Score=69.00 Aligned_cols=45 Identities=27% Similarity=0.671 Sum_probs=36.7
Q ss_pred CCcccccccccccccEE---eCCCCHhhhHHhHHHHhcc--------CCCCCC--cccc
Q psy4141 299 GSRQCYLCNDREVTHAL---IPCGHNFFCSECAERTCDF--------DRTCPM--CRVP 344 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~~l---lpCgH~~fC~~C~~~~~~~--------~~~CP~--Cr~~ 344 (353)
+..+|.||++.+..... .+|||. ||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45789999998766543 379999 999999999874 247999 9987
No 134
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.03 E-value=1.2e-06 Score=68.44 Aligned_cols=50 Identities=20% Similarity=0.276 Sum_probs=43.0
Q ss_pred eecCCCchHHHHHHHcCce-EEecCCCCcCeEEEec-CHHHHHHHHHHHHHHHh
Q psy4141 3 KISRSGCKIKALRAKTNTY-IKTPVRGEEPVFVVTG-RKEDVARAKREILSAAD 54 (353)
Q Consensus 3 IIGk~G~~Ik~I~~~Tga~-I~ip~~~e~~vv~I~G-~~e~v~~Ak~~I~~i~~ 54 (353)
+||++|.+||+|+++||++ |++.+ ++..|.|.| +.+++++|+.+|..+.+
T Consensus 29 vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 29 AIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp HHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred hcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 7999999999999999998 99973 347788888 89999999999965544
No 135
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.98 E-value=9.5e-06 Score=67.40 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=60.0
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCC--CCeEEEEcCHHHHHHHHHHHHHHHHhh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDK--EPVFEVTGAPDSVEIARQEIESHIIRR 148 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~--e~~v~I~G~~e~V~~A~~~I~~~i~~r 148 (353)
....+.|...+++.|||++|+.|+.|++.|++.|.+..-+. +-.|+|.|++..-.+|+.+|..+..-.
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999998765443 568999999999999999999887763
No 136
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.89 E-value=1.2e-05 Score=67.10 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=44.2
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCC-------------------CcCeEEEec-CHHHHHHHHHHHHHHHhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRG-------------------EEPVFVVTG-RKEDVARAKREILSAADH 55 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~-------------------e~~vv~I~G-~~e~v~~Ak~~I~~i~~~ 55 (353)
+|||.+|.+||+|+++|||+|.|..++ ++-.|.|++ +.+.+++|+++|..++..
T Consensus 26 ~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 26 LLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred eEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 489999999999999999999996532 122345555 789999999999999875
No 137
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.76 E-value=8.8e-06 Score=58.80 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred CcccccccccccccEEe-CCCCHhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 300 SRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
...|+||++...+++.. +|||. ||+.|+.+|......||+++.++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 36899999999999999 99999 9999999999876679999999854
No 138
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.55 E-value=4.4e-05 Score=60.12 Aligned_cols=48 Identities=33% Similarity=0.676 Sum_probs=37.6
Q ss_pred cccccccccccc-EEeCCCCHhhhHHhHHHHhcc-CCCCCCccccccccee
Q psy4141 302 QCYLCNDREVTH-ALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQAMR 350 (353)
Q Consensus 302 ~C~IC~~~~~~~-~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~~~~r 350 (353)
-|.+|--..... -.+||.|. ||.+|+..|..+ ...||.|+.++..+-+
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 366776665543 35899998 999999999866 8899999999876533
No 139
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.41 E-value=0.00024 Score=53.24 Aligned_cols=48 Identities=17% Similarity=0.442 Sum_probs=39.7
Q ss_pred CCCcccccccccccccEE-eCCCCHhhhHHhHHHHhccC--CCCCCcccccc
Q psy4141 298 SGSRQCYLCNDREVTHAL-IPCGHNFFCSECAERTCDFD--RTCPMCRVPVN 346 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~l-lpCgH~~fC~~C~~~~~~~~--~~CP~Cr~~i~ 346 (353)
+....|.||++....... ..|+|. |...|+.+|+... ..||+||..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 345889999998865443 389999 9999999999875 89999998865
No 140
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.32 E-value=9.6e-05 Score=53.12 Aligned_cols=49 Identities=20% Similarity=0.533 Sum_probs=38.9
Q ss_pred CCCcccccccccccccEEeCCCCH----hhhHHhHHHHhcc--CCCCCCcccccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHN----FFCSECAERTCDF--DRTCPMCRVPVN 346 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~----~fC~~C~~~~~~~--~~~CP~Cr~~i~ 346 (353)
++...|.||++...+..+.||.+. .|...|+.+|... ...||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 356789999987766667897641 2999999999876 678999998764
No 141
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.25 E-value=0.00013 Score=61.38 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=42.2
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCC--------------------c-CeEEEec-CH-----HHHHHHHHHHHHHHh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGE--------------------E-PVFVVTG-RK-----EDVARAKREILSAAD 54 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e--------------------~-~vv~I~G-~~-----e~v~~Ak~~I~~i~~ 54 (353)
+|||.+|.++|+|+++|||+|.|-.++. + --|.|++ +. +.+++|+.+|.+++.
T Consensus 21 ~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 21 RILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCHHHHHHHHHHHHHHHHHSS
T ss_pred EEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchhhHHHHHHHHHHHHHHHCC
Confidence 5899999999999999999999876541 1 1456666 33 379999999999976
No 142
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.03 E-value=0.00024 Score=74.76 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcC-HHHHHHHHHHHHHHHHh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGA-PDSVEIARQEIESHIIR 147 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~-~e~V~~A~~~I~~~i~~ 147 (353)
....+.||.+.++.|||+||++|++|.++||+.|.+.. +..|.|.+. .+.+++|+++|+.++.+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 66788999999999999999999999999999997663 456777775 67888899988877644
No 143
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.01 E-value=0.0003 Score=59.50 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=58.6
Q ss_pred eecCCCchHHHHHHHcCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceE
Q psy4141 3 KISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVT 82 (353)
Q Consensus 3 IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t 82 (353)
.||++|++|+.|+++.|-+|++-...++ ++. .|...+.- .+-.+... ....+...
T Consensus 50 ~IG~~G~ri~~i~~elgekIdIV~~s~d--------~~~------fI~naLsP------A~V~~V~i-----~~~~~~~~ 104 (144)
T 2cxc_A 50 AIGRGGRLIKLLREALGKNIEVVEYSSD--------LER------IVKNLFPG------VKIESINV-----RERNGVKQ 104 (144)
T ss_dssp HHCGGGHHHHHHHHHHSSEEEEEECCSS--------HHH------HHHHHSTT------SCEEEEEE-----EEETTEEE
T ss_pred cCccCchHHHHHHHHhCCeeEEEEcCCC--------HHH------HHHHhcCC------ceEEEEEE-----eecCCcEE
Confidence 4899999999999999988885433322 221 22222110 00000000 00023467
Q ss_pred EEEEecCCCccceeccCChHHHHHHHHhCceEEc
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVT 116 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~i 116 (353)
..+.||.+..++.|||+|.+++-..+.||.+|.|
T Consensus 105 ~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 105 VVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp EEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred EEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 8899999999999999999999999999988754
No 144
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.85 E-value=0.0017 Score=53.97 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=48.1
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCC--cCeEEEecCHHHHHHHHHHHHHHHhhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGE--EPVFVVTGRKEDVARAKREILSAADHFS 57 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e--~~vv~I~G~~e~v~~Ak~~I~~i~~~~~ 57 (353)
.|+|++|++|+.|+..+++.|++..-.. ..-|+|.|++..-.+|+.+|..+++...
T Consensus 69 ~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~hr 126 (140)
T 3v69_A 69 IMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGPPPFRRDVDRMLTDLAHYCR 126 (140)
T ss_dssp HHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999875432 4568889999999999999999987553
No 145
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.72 E-value=0.00032 Score=67.13 Aligned_cols=50 Identities=18% Similarity=0.470 Sum_probs=39.4
Q ss_pred CCCcccccccccccccEE--------eCCCCHhhhHHhHHHHhcc--C---------CCCCCcccccccc
Q psy4141 298 SGSRQCYLCNDREVTHAL--------IPCGHNFFCSECAERTCDF--D---------RTCPMCRVPVNQA 348 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~l--------lpCgH~~fC~~C~~~~~~~--~---------~~CP~Cr~~i~~~ 348 (353)
....+|.||++.....-. ..|+|. |...|+.+|... . ..||+||.+++.-
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 456899999998765111 379999 999999999875 1 3699999998753
No 146
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.70 E-value=0.00016 Score=76.35 Aligned_cols=94 Identities=23% Similarity=0.327 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC
Q psy4141 40 EDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR 119 (353)
Q Consensus 40 e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~ 119 (353)
+.++.|+.....+++.+...-.... .-....| ....|.||.+.+|.|||++|++||+|+++||+.|.+..
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~~-------~~~~~ap--~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~- 635 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTPD-------EMSPNAP--RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCC-------CCCTTSC--BCCCC------------------CTTCCCCCSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccc-------cccccCc--eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-
Confidence 4455666666666555433211111 1112344 44578899999999999999999999999999998763
Q ss_pred CCCCeEEEEcC-HHHHHHHHHHHHHHH
Q psy4141 120 DKEPVFEVTGA-PDSVEIARQEIESHI 145 (353)
Q Consensus 120 ~~e~~v~I~G~-~e~V~~A~~~I~~~i 145 (353)
+..|.|.+. .+..++|+++|..+.
T Consensus 636 --dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 --DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ------CCCBSSHHHHCC---------
T ss_pred --CceEEEecCCHHHHHHHHHHHHHhc
Confidence 457888875 677788888887665
No 147
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.69 E-value=0.013 Score=53.70 Aligned_cols=91 Identities=14% Similarity=0.119 Sum_probs=58.4
Q ss_pred eecCCCchHHHH-HHHcCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcce
Q psy4141 3 KISRSGCKIKAL-RAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHV 81 (353)
Q Consensus 3 IIGk~G~~Ik~I-~~~Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (353)
.||++|.+|+.| ++-.|-+|++-...++ ++ ..|...+.- ..-..... . + ....
T Consensus 131 cIG~~G~rI~~i~~eL~gekIDIi~~s~d--------p~------~fi~nalsP------A~V~~V~i----~-~-~~~~ 184 (251)
T 2asb_A 131 CIGPMGQRVRNVMSELSGEKIDIIDYDDD--------PA------RFVANALSP------AKVVSVSV----I-D-QTAR 184 (251)
T ss_dssp HHCGGGHHHHHHHHHTTTCEEEEEECCSS--------HH------HHHHHHTTT------SCCSEEEE----E-E-TTTT
T ss_pred HhCCCchHHHHHHHHhCCCeEEEEEecCC--------HH------HHHHhccCC------cceEEEEE----E-c-CCCc
Confidence 489999999999 6777777775433322 11 112122110 00000000 0 0 1125
Q ss_pred EEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC
Q psy4141 82 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR 119 (353)
Q Consensus 82 t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~ 119 (353)
...+.||.++.++-|||+|.+|+-..+.||-+|.|...
T Consensus 185 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 185 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred EEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 68899999999999999999999999999999977543
No 148
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.62 E-value=0.015 Score=56.17 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=60.0
Q ss_pred eecCCCchHHHHHHHc-CceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcce
Q psy4141 3 KISRSGCKIKALRAKT-NTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHV 81 (353)
Q Consensus 3 IIGk~G~~Ik~I~~~T-ga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (353)
.||++|.+|+.|.++. |-+|++-...++ ++ ..|...+. ..+...... -.+...
T Consensus 254 cIG~~G~rI~~i~~eL~gekIDIi~~s~d--------p~------~fi~nals------PA~V~~V~~------~~~~~~ 307 (366)
T 1k0r_A 254 CIGPMGQRVRNVMSELSGEKIDIIDYDDD--------PA------RFVANALS------PAKVVSVSV------IDQTAR 307 (366)
T ss_dssp HHCGGGHHHHHHHHHTTTCEEEEEECCSS--------HH------HHHHHHTT------TSCCSEEEE------EETTTT
T ss_pred ccCCcchHHHHHHHHhCCCeEEEEEcCCC--------HH------HHHHHhcC------CcceeEEEE------EcCCCc
Confidence 4899999999999998 777775433222 11 12222211 000000000 001235
Q ss_pred EEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCC
Q psy4141 82 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR 119 (353)
Q Consensus 82 t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~ 119 (353)
...+.||.+..++.|||+|.+++-..+.||.+|.|-..
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 78899999999999999999999999999999977544
No 149
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.27 E-value=0.004 Score=65.36 Aligned_cols=53 Identities=21% Similarity=0.134 Sum_probs=12.1
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHhhh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAADHF 56 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~~~ 56 (353)
.|||++|.+||.|.++||++|++.+. ..+.+...+.+.+++|+..|..++.+.
T Consensus 583 ~vig~gg~~i~~i~~~tg~~idi~dd--G~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 583 EVIGSGGKVIREIVATTGAKVDINDD--GVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp ---------------------------------CCSCHHHHHHHHHC--------
T ss_pred hhcCCCchhHHHHHHHHCCceeEECC--ceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 48999999999999999999998743 355555567999999999998887644
No 150
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.53 E-value=0.016 Score=44.86 Aligned_cols=56 Identities=21% Similarity=0.655 Sum_probs=44.8
Q ss_pred CCCCCCCcccccccccccccEEeCCCCHhhhHHhHHHHhccCCCCCCcccccccceec
Q psy4141 294 SGSISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 351 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~~~~CP~Cr~~i~~~~ri 351 (353)
...+....-|..|+.... -|+.|.-..+|..|+..+......||+|..++-..|++
T Consensus 22 d~s~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 22 DATHLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CccccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 334556788999998776 45668744499999999998899999999999877765
No 151
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.17 E-value=0.016 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.638 Sum_probs=27.2
Q ss_pred CCccccccccc-ccccEE--eCCCCHhhhHHhHHHHh
Q psy4141 299 GSRQCYLCNDR-EVTHAL--IPCGHNFFCSECAERTC 332 (353)
Q Consensus 299 ~~~~C~IC~~~-~~~~~l--lpCgH~~fC~~C~~~~~ 332 (353)
++..|.||.+. +..++. +.|+|+ ||..|+..++
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHHS
T ss_pred CCCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHHh
Confidence 45789999975 566666 899999 9999999843
No 152
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.09 E-value=0.16 Score=48.74 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=35.0
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEcCC
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPS 118 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~ 118 (353)
....+.||.++.++-|||+|.+++--.+.||-+|.+-+
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 57889999999999999999999999999999997653
No 153
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.02 E-value=0.1 Score=47.41 Aligned_cols=46 Identities=17% Similarity=0.469 Sum_probs=37.1
Q ss_pred CcccccccccccccEEe-CCCCHhhhHHhHHHHhcc--CCCCCCcccccc
Q psy4141 300 SRQCYLCNDREVTHALI-PCGHNFFCSECAERTCDF--DRTCPMCRVPVN 346 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~ll-pCgH~~fC~~C~~~~~~~--~~~CP~Cr~~i~ 346 (353)
-..|.+|.+.......= .|+|. |...|+.+|+.. ...||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 46799999987655442 38998 999999999876 459999998764
No 154
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.41 E-value=0.15 Score=38.23 Aligned_cols=34 Identities=24% Similarity=0.719 Sum_probs=29.4
Q ss_pred CcccccccccccccEEeCC----CCHhhhHHhHHHHhcc
Q psy4141 300 SRQCYLCNDREVTHALIPC----GHNFFCSECAERTCDF 334 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~llpC----gH~~fC~~C~~~~~~~ 334 (353)
.+.|.+|.++..+.-++.| .|. ||..|.+...+.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCe-eeccccHHHHHh
Confidence 4789999999999888888 488 999999887664
No 155
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=88.79 E-value=0.25 Score=41.46 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=33.2
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHhCceEEc
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVT 116 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~i 116 (353)
....+.|+...+|..||++|++|+.|+++.|-+|.+
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdI 71 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEV 71 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEE
Confidence 567899999999999999999999999999999954
No 156
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=85.03 E-value=0.17 Score=53.10 Aligned_cols=51 Identities=25% Similarity=0.271 Sum_probs=0.0
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHHh
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAD 54 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~~ 54 (353)
.+||++|.+|+.|.++||+.|++... ..+.+...+.+.+.+|++.|..++.
T Consensus 573 ~~ig~gGk~I~~I~~~~G~~IdI~~d--g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 573 DVIGKGGSVIRALTEETGTTIEIEDD--GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp -----------------------------------------------------
T ss_pred ccccccceeeeeeehhhCceEEecCC--ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 47999999999999999999988743 3555544566777888777766654
No 157
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=84.63 E-value=0.61 Score=41.96 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=65.0
Q ss_pred eEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCC-CcceEEEEEecCCCccceeccCChHHHHHHHHh
Q psy4141 32 VFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGV-PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 32 vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~T 110 (353)
+|.++=..+..+.|+..|.++++.+.- .. .-.... .....+.|.|..+..|.|||+.|++++.||..+
T Consensus 53 ~V~v~~~~~~~~~a~~~L~~ll~~m~~---------~~--~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~ 121 (225)
T 3gku_A 53 IIRAKRKETLQDKAIEFLEQVFDAMNM---------AV--DISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLV 121 (225)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHHTTC---------CC--EEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHH
T ss_pred EEEEEeccchHHHHHHHHHHHHHHcCC---------Ce--EEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHH
Confidence 344433334456788888888876521 00 000000 011345677777889999999999999999999
Q ss_pred CceEEcCCCCCCC-eEEEEcCHHHHHHHHHHHHHHHHh---hhCCCCc
Q psy4141 111 NTYIVTPSRDKEP-VFEVTGAPDSVEIARQEIESHIIR---RTGSCVT 154 (353)
Q Consensus 111 ga~I~ip~~~~e~-~v~I~G~~e~V~~A~~~I~~~i~~---r~g~~~~ 154 (353)
...+.-...+..+ .+-|-|-.+.-+.....+...+.+ ++|..+.
T Consensus 122 ~~~vn~~~~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~~tg~~v~ 169 (225)
T 3gku_A 122 SLVVNKSSSDYIRVKLDTENYRERRKETLETLAKNIAYKVKRTKRSVS 169 (225)
T ss_dssp HHHHHHTCSSCCEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHhcCCCceEEEEecchHHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 8666433222222 344445555555555555544444 6787765
No 158
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=81.06 E-value=0.39 Score=40.58 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=48.1
Q ss_pred EEEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcCHHHHHHHHHHHHHHHHh---hhCCCCc
Q psy4141 82 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESHIIR---RTGSCVT 154 (353)
Q Consensus 82 t~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~i~~---r~g~~~~ 154 (353)
++.+.+..+..|.||||.|.|++.||--+.-.+.-.. +..=.+-|.|-.+.-+...+.+...+.+ ++|+.+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~~~-~~~V~LDve~YRerReetL~~lA~~~A~kV~~tgk~v~ 108 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPTY-GYSIRLEISTFLQNQEKVMDTQLQSVIMTVHEVGKGQM 108 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHHH-SCEEEEEETTHHHHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhhcC-CceEEEEhHHhHHHHHHHHHHHHHHHHHHHHHHCCcCC
Confidence 4667788899999999999999999977744432111 1111244445567777776666666665 6777765
No 159
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=74.00 E-value=33 Score=27.53 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=50.0
Q ss_pred CCcCeEEEecCHHHHHHHHHHHH-HHHhhhhhhhhccCCCCCCCCCCCCCCCcceEEEEEecCCCcc-ceeccCCh----
Q psy4141 28 GEEPVFVVTGRKEDVARAKREIL-SAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVG-LVVGPKGA---- 101 (353)
Q Consensus 28 ~e~~vv~I~G~~e~v~~Ak~~I~-~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG-~IIGkgG~---- 101 (353)
+.+-++.|+|-+++|.+-...=. .+..+|. ++++..|-..-.| .+|--.|.
T Consensus 40 gn~l~i~itgvpeqvrkelakeaerl~~efn-----------------------i~v~y~imgsgsgvm~i~f~gddlea 96 (170)
T 4hhu_A 40 GNRLVIVITGVPEQVRKELAKEAERLKAEFN-----------------------INVQYQIMGSGSGVMVIVFEGDDLEA 96 (170)
T ss_dssp TTEEEEEEESCCHHHHHHHHHHHHHHHHHHT-----------------------CEEEEEEECTTCCEEEEEEECSCHHH
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHHHhcc-----------------------eEEEEEEEeCCceEEEEEEecCcHHH
Confidence 45678999999999976433322 2333341 3333333322222 22323332
Q ss_pred -------HHHHHHHHhCceEEcCCCCCCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 102 -------TIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 102 -------tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
.|++-++-.|+.-..- +..+-.|.|+|-|++|.+-..--.+.++.
T Consensus 97 ~ekalkemirqarkfagtvtytl-~gn~l~i~itgvpeqvrkelakeaerl~~ 148 (170)
T 4hhu_A 97 LEKALKEMIRQARKFAGTVTYTL-SGNRLVIVITGVPEQVRKELAKEAERLKA 148 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE-CSSEEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcceEEEEE-eCCEEEEEEeCCcHHHHHHHHHHHHHHHH
Confidence 3444444445544322 23344799999999998744333344443
No 160
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=73.77 E-value=1.2 Score=34.23 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=23.7
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHH
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQ 109 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~ 109 (353)
..++|.|....-|.|||++|+.|++|++.
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 34678888888999999999999887543
No 161
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=72.92 E-value=0.23 Score=52.38 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=17.8
Q ss_pred eeecCCCchHHHHHHHcCceEEecCCCCcCeEEEecCHHHHHHHHHHHHHHH
Q psy4141 2 KKISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAA 53 (353)
Q Consensus 2 ~IIGk~G~~Ik~I~~~Tga~I~ip~~~e~~vv~I~G~~e~v~~Ak~~I~~i~ 53 (353)
.+||++|.+||.|+++||+.|++.. +..+.+...+.+..++|+..|..+.
T Consensus 611 ~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 611 EVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ----------CTTCCCCCSCC----------CCCBSSHHHHCC---------
T ss_pred hcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3799999999999999999999884 2343333455677777776665554
No 162
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=64.85 E-value=3.5 Score=39.64 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=33.3
Q ss_pred CcccccccccccccEE-eCCCCH-hhhHHhHHHHhcc--CCCCCCcccccc
Q psy4141 300 SRQCYLCNDREVTHAL-IPCGHN-FFCSECAERTCDF--DRTCPMCRVPVN 346 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~l-lpCgH~-~fC~~C~~~~~~~--~~~CP~Cr~~i~ 346 (353)
.+.|++-+.+...++- ..|.|. ||-.+=.-.+..+ .+.||+|...+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 4889999999888886 689997 3333333333333 789999998763
No 163
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=58.56 E-value=5.2 Score=38.32 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=33.4
Q ss_pred CcccccccccccccEE-eCCCCH-hhhHHhHHHHhcc--CCCCCCcccccc
Q psy4141 300 SRQCYLCNDREVTHAL-IPCGHN-FFCSECAERTCDF--DRTCPMCRVPVN 346 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~l-lpCgH~-~fC~~C~~~~~~~--~~~CP~Cr~~i~ 346 (353)
.+.|++-+.+...++- ..|.|. ||-..=.-.+..+ .+.||+|...+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 4789999999888886 689997 3333333333333 789999998874
No 164
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=57.47 E-value=8.4 Score=27.51 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=30.3
Q ss_pred CcccccccccccccEEeCCCCHhhhHHhHHHHhcc----CCCCCCccccc
Q psy4141 300 SRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRVPV 345 (353)
Q Consensus 300 ~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~----~~~CP~Cr~~i 345 (353)
...|.||.+......---|... |...|+..-... ...|+.|....
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCcCCCCCCCeEEECCCCCCc-eecccCCCccCcCCCCCEECccccCCC
Confidence 3569999876442222467776 999999754443 56899997643
No 165
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=54.02 E-value=5.2 Score=36.93 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=23.1
Q ss_pred eEEEEEecC-CCccceeccCChHHHHHHHH
Q psy4141 81 VTIEVRVPY-KVVGLVVGPKGATIKRIQHQ 109 (353)
Q Consensus 81 ~t~~v~VP~-~~vG~IIGkgG~tIk~Iq~~ 109 (353)
+...+.|.. .+.+.|||++|++||+|..+
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ 269 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKR 269 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHH
Confidence 556677777 56799999999999988644
No 166
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=49.35 E-value=12 Score=40.37 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=44.5
Q ss_pred CCCCcccccccccccccEEeCCCC-HhhhHHhHHHHhccCCCCCCccccccc
Q psy4141 297 ISGSRQCYLCNDREVTHALIPCGH-NFFCSECAERTCDFDRTCPMCRVPVNQ 347 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~llpCgH-~~fC~~C~~~~~~~~~~CP~Cr~~i~~ 347 (353)
..++..|+|-++.-.+||.+|.|| . +=+.++.+|......||+=|.+++.
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~T-ydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMN-IDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEE-ECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 345799999999999999999984 7 9999999999888899999998864
No 167
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.26 E-value=8.4 Score=27.06 Aligned_cols=40 Identities=30% Similarity=0.720 Sum_probs=31.5
Q ss_pred cccccccccccccEE---eCCCCHhhhHHhHHHHhccCCCCCCc
Q psy4141 301 RQCYLCNDREVTHAL---IPCGHNFFCSECAERTCDFDRTCPMC 341 (353)
Q Consensus 301 ~~C~IC~~~~~~~~l---lpCgH~~fC~~C~~~~~~~~~~CP~C 341 (353)
+.|..|...+.+... -.|.+. ||.+|-.=+-+..-.||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 469999988865442 468888 9999988777778899988
No 168
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.47 E-value=29 Score=30.80 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=43.7
Q ss_pred EEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcCHHHHHHHHHHH
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEI 141 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I 141 (353)
.-+.++...+.+++|+++..++.|.+.+++.|.+= ....|=|.+.......+...|
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG---~NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG---QNGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC---TTSEEEEESCHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE---CCcEEEEeCCchhHHHHHHHH
Confidence 44678889999999999999999999999999763 445788888876554444444
No 169
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.46 E-value=11 Score=28.68 Aligned_cols=46 Identities=24% Similarity=0.601 Sum_probs=33.6
Q ss_pred Ccccccccccccc----cEE---eCCCCHhhhHHhHHHHhcc-CCCCCCcccccc
Q psy4141 300 SRQCYLCNDREVT----HAL---IPCGHNFFCSECAERTCDF-DRTCPMCRVPVN 346 (353)
Q Consensus 300 ~~~C~IC~~~~~~----~~l---lpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~i~ 346 (353)
...|.||-+..-. -++ .-|+-- .|+.|..--... ...||.|..++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCccc
Confidence 3689999987311 123 356665 899999876666 889999999886
No 170
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=43.48 E-value=8.2 Score=34.15 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.0
Q ss_pred EEEEEecCCCccceeccCChHHHHHHH
Q psy4141 82 TIEVRVPYKVVGLVVGPKGATIKRIQH 108 (353)
Q Consensus 82 t~~v~VP~~~vG~IIGkgG~tIk~Iq~ 108 (353)
.++|.|....-|.|||++|+.|++|++
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 356777777889999999999988754
No 171
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=43.36 E-value=14 Score=30.18 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=32.5
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHh-----------ccCCCCCCcccccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTC-----------DFDRTCPMCRVPVN 346 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~-----------~~~~~CP~Cr~~i~ 346 (353)
..+..|.+|.+--.-..--.|-.. ||.+|+.+.. ...+.|++|+..-.
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCcCeecCCCCeeEecCCCchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 345679999876442222467776 9999999641 12689999976543
No 172
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=43.23 E-value=10 Score=34.33 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=24.8
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~T 110 (353)
..++|.|....-|.|||++|+.|++|++.-
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 456788888889999999999999886643
No 173
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=42.66 E-value=8.3 Score=34.80 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=23.7
Q ss_pred EEEEEecCCCccceeccCChHHHHHHHHh
Q psy4141 82 TIEVRVPYKVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 82 t~~v~VP~~~vG~IIGkgG~tIk~Iq~~T 110 (353)
.++|.|....-|.|||++|+.|++|++.-
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46778888888999999999998876443
No 174
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=42.27 E-value=19 Score=29.76 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=33.6
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhc-----------cCCCCCCcccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCD-----------FDRTCPMCRVP 344 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~-----------~~~~CP~Cr~~ 344 (353)
..+..|.+|.+--.-..--.|-.. ||..|+.+... ..+.||+|+..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCe-eeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 345789999987654434578787 99999996442 27789999854
No 175
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=41.59 E-value=1.6e+02 Score=24.96 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=57.7
Q ss_pred eEEEec--CHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceEEEEEecCCCccceeccCChHHHHHHHH
Q psy4141 32 VFVVTG--RKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQ 109 (353)
Q Consensus 32 vv~I~G--~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~ 109 (353)
-++++| +.+++..|.+.|.++++++.- .... ....++=.|-.-.+++=| ++..|...
T Consensus 60 Kiv~TGaks~e~~~~a~~~i~~~L~~lg~---------------~~~~-~~~~i~NIvas~dl~~~I-----~Le~la~~ 118 (180)
T 1ytb_A 60 KMVVTGAKSEDDSKLASRKYARIIQKIGF---------------AAKF-TDFKIQNIVGSCDVKFPI-----RLEGLAFS 118 (180)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTC---------------CCCC-EEEEEEEEEEEEECSSCB-----CHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcCC---------------Cccc-ccceEEEEEEEEECCCcc-----CHHHHHHh
Confidence 356677 789999999999999887621 0001 123332223222334434 56777666
Q ss_pred hCceEEcCCC----------C--------CCCeEEEEcC--HHHHHHHHHHHHHHHHh
Q psy4141 110 TNTYIVTPSR----------D--------KEPVFEVTGA--PDSVEIARQEIESHIIR 147 (353)
Q Consensus 110 Tga~I~ip~~----------~--------~e~~v~I~G~--~e~V~~A~~~I~~~i~~ 147 (353)
.+.......+ + ....|+|+|. ++.+++|.+.|...|.+
T Consensus 119 ~~~~~~YEPE~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~ 176 (180)
T 1ytb_A 119 HGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSE 176 (180)
T ss_dssp TTTTEECCTTTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cccceEECCccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5544432221 1 1247889995 78999999999988765
No 176
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=41.46 E-value=1.1e+02 Score=27.03 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=51.0
Q ss_pred CeEEEecCHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceEEEEEecCCCccceeccCChHHHHHHHHh
Q psy4141 31 PVFVVTGRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 31 ~vv~I~G~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~T 110 (353)
..++|+|+++.++++++.|..+ +.- .. ....-+.+-+....-|. +.++++....
T Consensus 149 N~Liv~g~~~~i~~i~~li~~l-D~p------------------~~---~~~~vi~l~~a~A~dl~----~~L~~~~~~~ 202 (246)
T 4e9j_A 149 NALIISDRSANIARIEDVIRQL-DQK------------------GS---HDYSVINLRYGWVMDAA----EVLNNAMSRG 202 (246)
T ss_dssp TEEEEEECHHHHHHHHHHHHHH-HTC------------------SC---CCEEEEECSSSCHHHHH----HHHHHHHHHT
T ss_pred CEEEEEcCHHHHHHHHHHHHHh-ccc------------------cc---cceEEEEecCCCHHHHH----HHHHHHhccC
Confidence 5788999999999888877555 210 00 13344555555444442 2333333221
Q ss_pred ------CceEEcCCCCCCCeEEEEcCHHHHHHHHHHHHHH
Q psy4141 111 ------NTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESH 144 (353)
Q Consensus 111 ------ga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~ 144 (353)
+..|... +....+.|+|+++.+++.+++|.++
T Consensus 203 ~~~~~~~~~v~ad--~rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 203 QAKGAAGAQVIAD--ARTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp CSTTCTTCEEEEE--GGGTEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEe--CCCCeEEEECCHHHHHHHHHHHHHh
Confidence 1333322 2334688999999999998888653
No 177
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=41.12 E-value=8.5 Score=35.47 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEecC-CCccceeccCChHHHHHHHH
Q psy4141 83 IEVRVPY-KVVGLVVGPKGATIKRIQHQ 109 (353)
Q Consensus 83 ~~v~VP~-~~vG~IIGkgG~tIk~Iq~~ 109 (353)
..+.|.. .+.+.|||++|++||+|..+
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ 259 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQA 259 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHH
Confidence 4456655 66689999999999988543
No 178
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=39.83 E-value=33 Score=25.86 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=32.1
Q ss_pred CCCCCCCcccccccccccccEEeCC---CCHhhhHHhHHHHhc----------------cCCCCCCccc
Q psy4141 294 SGSISGSRQCYLCNDREVTHALIPC---GHNFFCSECAERTCD----------------FDRTCPMCRV 343 (353)
Q Consensus 294 ~~~~~~~~~C~IC~~~~~~~~llpC---gH~~fC~~C~~~~~~----------------~~~~CP~Cr~ 343 (353)
.++...+..|.||..-.... ++|| +-. |...|+.+.-. ..+.|+.|..
T Consensus 9 ~e~~~~D~~C~VC~~~t~~~-l~pCRvC~Rv-fH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAES-LFPCRVCTRV-FHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSSC-CSSCSSSSSC-CCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCCCCCcccCccccccccc-eecccccccc-ccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 34445678999998655443 4565 455 88899999711 1468999943
No 179
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=39.73 E-value=2e+02 Score=25.35 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=57.8
Q ss_pred EEEec--CHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceEEEEEecCCCccceeccCChHHHHHHHHh
Q psy4141 33 FVVTG--RKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 33 v~I~G--~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~T 110 (353)
++++| +.+++..|.+.+.+++++..- .... ....++-.|-.-.+++=| .+.+|....
T Consensus 99 iV~TGAkS~e~a~~A~~ki~~~L~~lG~---------------~v~~-~~fkIqNIvas~dl~f~I-----~Le~la~~~ 157 (218)
T 3eik_A 99 MVITGAKSEKSSRMAAQRYAKIIHKLGF---------------NATF-DDFKIQNIVSSCDIKFSI-----RLEGLAYAH 157 (218)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHTTC---------------CCCC-EEEEEEEEEEEEECSSCB-----CHHHHHHHS
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHcCC---------------Cccc-ccceEEEEEEEEECCCcC-----cHHHHHHhc
Confidence 45565 688999999999988886510 0011 124444444444444444 466666555
Q ss_pred CceEEcCCC----------C--------CCCeEEEEcC--HHHHHHHHHHHHHHHHh
Q psy4141 111 NTYIVTPSR----------D--------KEPVFEVTGA--PDSVEIARQEIESHIIR 147 (353)
Q Consensus 111 ga~I~ip~~----------~--------~e~~v~I~G~--~e~V~~A~~~I~~~i~~ 147 (353)
+-.+....+ + ....|+|+|. ++.+++|.+.|..+|.+
T Consensus 158 ~~~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~ 214 (218)
T 3eik_A 158 SNYCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQ 214 (218)
T ss_dssp TTTEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 444432211 1 1247899995 78999999999998876
No 180
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=39.30 E-value=8.6 Score=34.45 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=23.9
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHH
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQ 109 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~ 109 (353)
..++|.|....-|.|||++|+.|++|++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34678888888999999999999887544
No 181
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.47 E-value=36 Score=25.88 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=26.3
Q ss_pred CCcccccccccccccEEeC-----CCCHhhhHHhHHHHhcc--CCCCCCccccc
Q psy4141 299 GSRQCYLCNDREVTHALIP-----CGHNFFCSECAERTCDF--DRTCPMCRVPV 345 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~~llp-----CgH~~fC~~C~~~~~~~--~~~CP~Cr~~i 345 (353)
+...| +|...... .++- |...+|...|+..-... ...||.|+..-
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcC
Confidence 44666 99885432 2344 43234777887632211 56899997643
No 182
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=37.34 E-value=8 Score=34.12 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=24.7
Q ss_pred EEEEecCCCccceeccCChHHHHHH----HHhCceEE
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQ----HQTNTYIV 115 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq----~~Tga~I~ 115 (353)
++|.|....-|.|||++|+.|++|+ +.++..+.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~ 99 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQ 99 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceE
Confidence 4566667778999999999998875 45665543
No 183
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=36.99 E-value=2.3e+02 Score=25.29 Aligned_cols=95 Identities=17% Similarity=0.162 Sum_probs=57.3
Q ss_pred eEEEec--CHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcceEEEEEecCCCccceeccCChHHHHHHHH
Q psy4141 32 VFVVTG--RKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQ 109 (353)
Q Consensus 32 vv~I~G--~~e~v~~Ak~~I~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~ 109 (353)
-++++| +.+++..|.+.|.++++++.- .... ....++=.|-.-.+++=| ++..|...
T Consensus 120 KiV~TGaks~e~a~~A~~~i~~~L~~lg~---------------~~~~-~~f~IqNIVas~dl~f~I-----~Le~la~~ 178 (240)
T 1rm1_A 120 KMVVTGAKSEDDSKLASRKYARIIQKIGF---------------AAKF-TDFKIQNIVGSCDVKFPI-----RLEGLAFS 178 (240)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHHTC---------------CCCC-EEEEEEEEEEEEECSSCB-----CHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHcCC---------------Cccc-CcceEEEEEEEEeCCCcc-----CHHHHHHh
Confidence 356677 789999999999999987621 0001 123332222222334444 56677665
Q ss_pred hCceEEcCCC----------C--------CCCeEEEEcC--HHHHHHHHHHHHHHHHh
Q psy4141 110 TNTYIVTPSR----------D--------KEPVFEVTGA--PDSVEIARQEIESHIIR 147 (353)
Q Consensus 110 Tga~I~ip~~----------~--------~e~~v~I~G~--~e~V~~A~~~I~~~i~~ 147 (353)
.+-.+....+ + ....|+|+|. ++.+++|.+.|..+|.+
T Consensus 179 ~~~~~~YEPE~fPGLiyR~~~pkvvllIF~SGKIviTGaK~~~~~~~Ai~~i~p~L~~ 236 (240)
T 1rm1_A 179 HGTFSSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSE 236 (240)
T ss_dssp TTTTEEEETTTEEEEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred chhccEECCccCCceEEEeCCCcEEEEEecCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 5443322111 1 1247889995 78999999999988765
No 184
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=34.66 E-value=9.2 Score=34.37 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=23.7
Q ss_pred EEEEecCCCccceeccCChHHHHHHH----HhCce
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQH----QTNTY 113 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq~----~Tga~ 113 (353)
++|.|....-|.|||++|+.|++|++ .++..
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~ 98 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVP 98 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCc
Confidence 55667777889999999999988754 55544
No 185
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=34.56 E-value=9.4 Score=34.52 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=24.6
Q ss_pred eEEEEEecCCCccceeccCChHHHHHHHHh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~Iq~~T 110 (353)
..++|.|....-|.|||++|+.|++|++.-
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 346777888888999999999999987654
No 186
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=34.44 E-value=7.9 Score=27.04 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=28.4
Q ss_pred CCCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc----CCCCCCccccc
Q psy4141 297 ISGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRVPV 345 (353)
Q Consensus 297 ~~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~----~~~CP~Cr~~i 345 (353)
...+..|.||.+......--.|... |...|+..-... ...||.|+...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCC-BCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHH-HcccccCCCcCcCCCCccCChhhcCch
Confidence 3456789999874321111245554 777777642222 56799997643
No 187
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=34.39 E-value=11 Score=34.27 Aligned_cols=27 Identities=19% Similarity=0.434 Sum_probs=23.6
Q ss_pred CCccceeccCChHHHHH-HHHhCceEEc
Q psy4141 90 KVVGLVVGPKGATIKRI-QHQTNTYIVT 116 (353)
Q Consensus 90 ~~vG~IIGkgG~tIk~I-q~~Tga~I~i 116 (353)
+-+|..||++|.+|+.| ++..|=+|.+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDI 153 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDI 153 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEE
Confidence 66899999999999999 7777999864
No 188
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=34.35 E-value=13 Score=33.54 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEecCCCccceeccCChHHHHHHHH
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQHQ 109 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq~~ 109 (353)
++|.|-...-|.|||++|+.|++|++.
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 446666677899999999999888654
No 189
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=34.13 E-value=80 Score=27.91 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=43.9
Q ss_pred EEEEecCCCccceeccCChHHHHHHHHhCceEEcCCCCCCCeEEEEcC-HHHHHHHHHHHH
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGA-PDSVEIARQEIE 142 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq~~Tga~I~ip~~~~e~~v~I~G~-~e~V~~A~~~I~ 142 (353)
.-+.|+...+.+++|++|..++.|.+.+++.|.+= ....|-|.+. ++.+..+...|.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG---~NG~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA---RNGRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE---TTTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe---CCCEEEEecCCHHHHHHHHHHHH
Confidence 45688899999999999999999999999999764 3567888874 555555444443
No 190
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=32.37 E-value=28 Score=29.53 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=24.1
Q ss_pred eEEEEEecCCCccceeccCChHHHHH-HHHh
Q psy4141 81 VTIEVRVPYKVVGLVVGPKGATIKRI-QHQT 110 (353)
Q Consensus 81 ~t~~v~VP~~~vG~IIGkgG~tIk~I-q~~T 110 (353)
....|.||++..|.+|| ++|++| ++++
T Consensus 7 l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 7 IADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 56689999999999999 699995 9999
No 191
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=31.77 E-value=11 Score=33.48 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=21.5
Q ss_pred EEEEecCCCccceeccCChHHHHHHHHh
Q psy4141 83 IEVRVPYKVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 83 ~~v~VP~~~vG~IIGkgG~tIk~Iq~~T 110 (353)
++|.|....-|.|||++|+.|++|++.-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 4456666777999999999998876543
No 192
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=31.33 E-value=7.1 Score=36.61 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=35.6
Q ss_pred CCcccccccccccccEEeC----CCC-HhhhHHhHHHHhccCCCCCCcccc
Q psy4141 299 GSRQCYLCNDREVTHALIP----CGH-NFFCSECAERTCDFDRTCPMCRVP 344 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~~llp----CgH-~~fC~~C~~~~~~~~~~CP~Cr~~ 344 (353)
....|+||-......++.. =|+ .++|..|...|......||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 3578999999988776642 342 239999999997778899999775
No 193
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=30.83 E-value=16 Score=35.04 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCccceeccCChHHHHHHHHh-CceEEc
Q psy4141 90 KVVGLVVGPKGATIKRIQHQT-NTYIVT 116 (353)
Q Consensus 90 ~~vG~IIGkgG~tIk~Iq~~T-ga~I~i 116 (353)
+-+|..||++|.+|+.|.++. |=+|.+
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDI 276 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDI 276 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEE
Confidence 678999999999999999999 888854
No 194
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=30.28 E-value=50 Score=23.50 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=24.3
Q ss_pred HHHHHHHhCceEEcCCCCCCCeEEEEcCHHHHHHHHHHHHHHHHh
Q psy4141 103 IKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESHIIR 147 (353)
Q Consensus 103 Ik~Iq~~Tga~I~ip~~~~e~~v~I~G~~e~V~~A~~~I~~~i~~ 147 (353)
|++-++-.|+.-..- +..+-.|.|+|-|++|.+-..--.+.+..
T Consensus 23 irqarkfagtvtytl-dgndleiritgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 23 IRQARKFAGTVTYTL-DGNDLEIRITGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp HHHHTTTTCEEEEEE-CSSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcceEEEEe-cCCeeEEEEecChHHHHHHHHHHHHHHHH
Confidence 334444445443222 23444699999999998744333344443
No 195
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.25 E-value=37 Score=32.76 Aligned_cols=47 Identities=19% Similarity=0.452 Sum_probs=33.3
Q ss_pred CCCcccccccccccccEEe--CCCCHhhhHHhHHHHhcc----------CCCCCCccccc
Q psy4141 298 SGSRQCYLCNDREVTHALI--PCGHNFFCSECAERTCDF----------DRTCPMCRVPV 345 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~ll--pCgH~~fC~~C~~~~~~~----------~~~CP~Cr~~i 345 (353)
..+..|.+|-+-..-..-- .|... ||..|+.++... .+.|-+|...-
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~-FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCE-ECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcc-hHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 3467899999865433323 67776 999999998732 56899997653
No 196
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=28.78 E-value=26 Score=24.33 Aligned_cols=46 Identities=15% Similarity=0.416 Sum_probs=29.6
Q ss_pred CCCcccccccccccccEEeCCCCHhhhHHhHHHHhcc----CCCCCCcccc
Q psy4141 298 SGSRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF----DRTCPMCRVP 344 (353)
Q Consensus 298 ~~~~~C~IC~~~~~~~~llpCgH~~fC~~C~~~~~~~----~~~CP~Cr~~ 344 (353)
..+..|.+|.+......---|-.. |...|+..-... ...||.|+..
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~-fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRA-YHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCE-EEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChh-hhhhccCCCCCCCCCCceECcccccc
Confidence 345789999875321111356665 889999863322 6789999753
No 197
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.39 E-value=46 Score=27.99 Aligned_cols=43 Identities=23% Similarity=0.556 Sum_probs=30.4
Q ss_pred CCcccccccccccccEEe-----CCCCHhhhHHhHHHHhcc----------CCCCCCccccc
Q psy4141 299 GSRQCYLCNDREVTHALI-----PCGHNFFCSECAERTCDF----------DRTCPMCRVPV 345 (353)
Q Consensus 299 ~~~~C~IC~~~~~~~~ll-----pCgH~~fC~~C~~~~~~~----------~~~CP~Cr~~i 345 (353)
.+..|.+|-+-. .++ .|-.. ||..|+.++... ...|-+|...-
T Consensus 78 ~~~yC~wC~~Gg---~l~~Cdn~~C~r~-FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 78 YQSYCTICCGGR---EVLMCGNNNCCRC-FCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SBSSCTTTSCCS---EEEECSSTTTCCE-EEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CcceeeEecCCC---eEEeeCCCCCCCc-hhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 457899999754 233 35555 999999987654 45799997654
No 198
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.62 E-value=3.4 Score=34.77 Aligned_cols=45 Identities=16% Similarity=0.452 Sum_probs=30.8
Q ss_pred CCcccccccccc-----cccEEeCCCCHhhhHHhHHHHhcc-CCCCCCcccc
Q psy4141 299 GSRQCYLCNDRE-----VTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVP 344 (353)
Q Consensus 299 ~~~~C~IC~~~~-----~~~~llpCgH~~fC~~C~~~~~~~-~~~CP~Cr~~ 344 (353)
.+..|.+|...+ .-..-.-|.|. +|..|-.-.... ...|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 468999999975 22334679998 999997322111 5678888654
No 199
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=26.87 E-value=1.2e+02 Score=26.51 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=18.6
Q ss_pred CCCeEEEEcCHHHHHHHHHHHHH
Q psy4141 121 KEPVFEVTGAPDSVEIARQEIES 143 (353)
Q Consensus 121 ~e~~v~I~G~~e~V~~A~~~I~~ 143 (353)
....+.|+|+++.+++.+++|.+
T Consensus 215 rtNsliv~~~~~~~~~i~~lI~~ 237 (241)
T 3ezj_A 215 RTNSVIVSGDPATRDKMRRLIRR 237 (241)
T ss_dssp TTTEEEEEECHHHHHHHHHHHHH
T ss_pred CcCeEEEECCHHHHHHHHHHHHH
Confidence 33468899999999998888865
No 200
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=25.84 E-value=51 Score=25.29 Aligned_cols=43 Identities=12% Similarity=0.046 Sum_probs=32.9
Q ss_pred hHHHHHHHHhCceEEcCCCCC---------CCeEEEEcCHHHHHHHHHHHHH
Q psy4141 101 ATIKRIQHQTNTYIVTPSRDK---------EPVFEVTGAPDSVEIARQEIES 143 (353)
Q Consensus 101 ~tIk~Iq~~Tga~I~ip~~~~---------e~~v~I~G~~e~V~~A~~~I~~ 143 (353)
--|-+|.+++|+.+.|-...- .-.+.+.|.++++++|++.+.+
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 368899999999986643311 1278899999999999988864
No 201
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=25.51 E-value=1.1e+02 Score=28.71 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=36.5
Q ss_pred ccCChHHHHHHHH----hCceE--EcCCCCCCC-eEEEEcCHHHHHH-HHHHHHH---HHHhhhCCCC
Q psy4141 97 GPKGATIKRIQHQ----TNTYI--VTPSRDKEP-VFEVTGAPDSVEI-ARQEIES---HIIRRTGSCV 153 (353)
Q Consensus 97 GkgG~tIk~Iq~~----Tga~I--~ip~~~~e~-~v~I~G~~e~V~~-A~~~I~~---~i~~r~g~~~ 153 (353)
|++-+.|.+|.+. .|+++ .++..+..| ++|+.|.++.|.. |..++.. +|..+.-...
T Consensus 13 GR~~~vIe~I~~a~~~~~gv~LLd~~~D~~~NRsv~T~vg~pe~v~eaa~~~~~~A~elIDm~~H~G~ 80 (325)
T 1qd1_A 13 GKNQEVIDAISRAVAQTPGCVLLDVDSGPSTNRTVYTFVGRPEDVVEGALNAARAAYQLIDMSRHHGE 80 (325)
T ss_dssp SSCHHHHHHHHHHHHTSTTCEEEEEEEETTTTEEEEEEEECHHHHHHHHHHHHHHHHHHCCGGGCCCS
T ss_pred cCCHHHHHHHHHHHhcCCCcEEEeCCCCCCCCCceEEEccChHHHHHHHHHHHHHHHHhccccccCCC
Confidence 6777777777655 48888 345455554 7899999998866 4555554 4444444333
No 202
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=22.08 E-value=29 Score=31.69 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=22.5
Q ss_pred eEEEEEecC-CCccceeccCChHHHHHHHHh
Q psy4141 81 VTIEVRVPY-KVVGLVVGPKGATIKRIQHQT 110 (353)
Q Consensus 81 ~t~~v~VP~-~~vG~IIGkgG~tIk~Iq~~T 110 (353)
+...+.|.. .+.+.|||++|+.||+|..+.
T Consensus 231 i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~a 261 (301)
T 1ega_A 231 INGLILVEREGQKKMVIGNKGAKIKTIGIEA 261 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEEECCceEEEECCCcHHHHHHHHHH
Confidence 445666654 566899999999999886554
No 203
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=21.42 E-value=1.4e+02 Score=21.57 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=7.8
Q ss_pred Cccccccccccccc
Q psy4141 300 SRQCYLCNDREVTH 313 (353)
Q Consensus 300 ~~~C~IC~~~~~~~ 313 (353)
...|..|.......
T Consensus 25 ~~~C~~C~~~I~~~ 38 (89)
T 1x64_A 25 MPLCDKCGSGIVGA 38 (89)
T ss_dssp CCBCTTTCCBCCSC
T ss_pred CCCcccCCCEeccc
Confidence 35666666654443
Done!