RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4141
(353 letters)
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 72.0 bits (177), Expect = 8e-17
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR-DKEPVFEVTGAPDSVEIARQ 139
+ V +P + V+G G ++ ++ +T T I P D ++TG + +E AR
Sbjct: 10 ASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARH 69
Query: 140 EIES 143
E+
Sbjct: 70 EVLL 73
Score = 50.1 bits (120), Expect = 7e-09
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILSAADHFS 57
I ++G K++ L KT T I+ P + +TG KE + +A+ E+L +
Sbjct: 25 IGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQD 79
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 69.8 bits (171), Expect = 7e-16
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 67 ALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-VTPSRDKEPVF 125
AL L P VTIEV VP+ + V+G KG+ I+++ + I V + +
Sbjct: 3 ALEALVP-------VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDII 55
Query: 126 EVTGAPDSVEIARQEIESHI 145
+TG +++ A+ + +
Sbjct: 56 AITGLAANLDRAKAGLLERV 75
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 79
Score = 67.2 bits (164), Expect = 6e-15
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGAPDSVEIA 137
+T E +VP +VG ++G G I RIQ ++ I E +TG P+SV+ A
Sbjct: 8 MTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSA 67
Query: 138 RQEIESHI 145
++ ++ +
Sbjct: 68 KRLLDQIV 75
Score = 40.6 bits (95), Expect = 1e-05
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILS 51
I R G +I ++ ++ I+ E ++TG E V AKR +
Sbjct: 23 IGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQ 73
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 66.7 bits (163), Expect = 6e-15
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-VTPSRDKEPVFEVTGAPDSVEIARQ 139
+TI + + K VG ++G KG ++K+++ ++ I ++ E + + G +++ A
Sbjct: 4 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFA 63
Query: 140 EIESHI 145
I +
Sbjct: 64 MIIDKL 69
Score = 41.7 bits (98), Expect = 6e-06
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILS 51
I + G +K +R ++ I E + + G + +A I+
Sbjct: 19 IGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIID 67
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 66.3 bits (162), Expect = 8e-15
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSR-DKEPVFEVTGAPDSVEIARQ 139
+E+ + +K ++G GA I RI+ Q + P +K + + G P V+ A++
Sbjct: 5 DYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKR 64
Query: 140 EIES 143
E+
Sbjct: 65 ELLE 68
Score = 45.1 bits (107), Expect = 3e-07
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE-EPVFVVTGRKEDVARAKREILS 51
I +SG I ++ + ++ P E + + G + V +AKRE+L
Sbjct: 20 IGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGDPQGVQQAKRELLE 68
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 66.0 bits (161), Expect = 1e-14
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 79 GHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGAPDSVE 135
G I+V +P VG+V+G G IK+IQ+ I D E + ++TG PD +
Sbjct: 1 GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQ 60
Query: 136 IARQEIESHI 145
A + I +
Sbjct: 61 HAAEIITDLL 70
Score = 37.5 bits (87), Expect = 2e-04
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVR---GEEPVFVVTGRKEDVARAKREIL 50
I R+G IK ++ I+ E + +TG + A I
Sbjct: 18 IGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIIT 67
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 63.7 bits (155), Expect = 9e-14
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP--VFEVTGAPDSVEIAR 138
V+ +V + ++V ++G +G I++I + I P VTG P++VE A
Sbjct: 10 VSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAI 69
Query: 139 QEIESHI 145
I +
Sbjct: 70 DHILNLE 76
Score = 42.9 bits (101), Expect = 3e-06
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEP--VFVVTGRKEDVARAKREILSAADHF 56
I G I+ + + I+ P G VTG E+V A IL+ + +
Sbjct: 25 IGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGLPENVEEAIDHILNLEEEY 79
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 70
Score = 63.3 bits (154), Expect = 1e-13
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD---KEPVFEVTGAPDSVEIA 137
T E+ +P ++G ++G +GA I I+ + I + +TG+ S+ +A
Sbjct: 2 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLA 61
Query: 138 RQEIESHI 145
+ I + +
Sbjct: 62 QYLINARL 69
Score = 34.4 bits (79), Expect = 0.002
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILS 51
I R G I +R + IK E +TG ++ A+ I +
Sbjct: 17 IGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 67
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 81
Score = 63.4 bits (154), Expect = 1e-13
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 78 PGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEP-----VFEVTGAPD 132
PG+ E+ +P GLV+G G TIK++Q + +V + +TG P
Sbjct: 5 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPY 64
Query: 133 SVEIARQEIESHI 145
V+ A++ + I
Sbjct: 65 KVQQAKEMVLELI 77
Score = 35.7 bits (82), Expect = 8e-04
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEP-----VFVVTGRKEDVARAKREILS 51
I + G IK L+ + + G + +TG V +AK +L
Sbjct: 23 IGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLE 75
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 75
Score = 62.2 bits (151), Expect = 3e-13
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIV---TPSRDKEPVFEVTGAPDSVEIA 137
+T +V +P + G ++G G IK+I+H++ I ++ + +TG D ++ A
Sbjct: 4 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 63
Query: 138 RQEIESHI 145
+ +++ +
Sbjct: 64 QYLLQNSV 71
Score = 37.5 bits (87), Expect = 2e-04
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE---EPVFVVTGRKEDVARAKREILSAADHFS 57
I + G +IK +R ++ IK E + + +TG ++ + A+ + ++ +S
Sbjct: 19 IGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYS 75
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome
related protein 1, FXR1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 78
Score = 61.4 bits (149), Expect = 7e-13
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQE 140
E V ++GL +G G+ I++ + + D + D+V+ AR
Sbjct: 8 FHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGF 67
Query: 141 IES 143
+E
Sbjct: 68 LEF 70
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2,
KH3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 60.6 bits (147), Expect = 1e-12
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 82 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGAPDSVE 135
+E+ VP +VG ++G G T+ Q T I + + +TG+P + +
Sbjct: 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQ 63
Query: 136 IARQEIESHI 145
A+ I +
Sbjct: 64 AAQYLISQRV 73
Score = 37.5 bits (87), Expect = 2e-04
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE------EPVFVVTGRKEDVARAKREI 49
+ + G + + T I+ +GE +TG A+ I
Sbjct: 18 LGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 69
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 60.6 bits (147), Expect = 1e-12
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD----KEPVFEVTGAPDSVEI 136
+ V V K ++G KGA I +I+ + + I P +D + +TG + E
Sbjct: 10 FKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEA 69
Query: 137 ARQEIESHI 145
AR I +
Sbjct: 70 ARDAILRIV 78
Score = 40.6 bits (95), Expect = 2e-05
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE----EPVFVVTGRKEDVARAKREILS 51
I R G I +R + + I+ P + + + +TG +++ A+ IL
Sbjct: 25 IGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILR 76
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 60.2 bits (146), Expect = 2e-12
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 25/109 (22%)
Query: 37 GRKEDVARAKREILSAADHFSALRASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVV 96
G E + +A E+ + A+ F V P + ++
Sbjct: 1 GEPEKLGQALTEVYAKANSF------------------------TVSSVAAPSWLHRFII 36
Query: 97 GPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIESHI 145
G KG + +I Q + + E + G + V +A+++IE +
Sbjct: 37 GKKGQNLAKITQQMPKVHIEFTEG-EDKITLEGPTEDVSVAQEQIEGMV 84
Score = 31.0 bits (70), Expect = 0.038
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILS 51
I + G + + + + E + G EDV+ A+ +I
Sbjct: 36 IGKKGQNLAKITQQM-PKVHIEFTEGEDKITLEGPTEDVSVAQEQIEG 82
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 58.8 bits (142), Expect = 4e-12
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 82 TIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRD------KEPVFEVTGAPDSVE 135
VP GL++G G TIK I Q+ I +F + G P ++
Sbjct: 2 EFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQID 61
Query: 136 IARQEIESHI 145
ARQ IE I
Sbjct: 62 YARQLIEEKI 71
Score = 37.2 bits (86), Expect = 2e-04
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGE------EPVFVVTGRKEDVARAKREIL 50
I + G IK++ ++ I+ +F + G + + A++ I
Sbjct: 16 IGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIE 68
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 82
Score = 57.9 bits (140), Expect = 1e-11
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQ-TNTYI-VTPSRDKEPVFEVTGAPDSVEIAR 138
+EV +P K+ ++G KG I+ I + +I + G VE A+
Sbjct: 10 AEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPSSDVEKAK 69
Query: 139 QEIE 142
+++
Sbjct: 70 KQLL 73
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 57.3 bits (138), Expect = 3e-11
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 12/90 (13%)
Query: 61 ASRKSGALSPLSPPTGVPGHVTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI-----V 115
+S SG L+ +P V ++ VP + VG ++G G TI+ I + I
Sbjct: 2 SSGSSGILTENTP-------VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES 54
Query: 116 TPSRDKEPVFEVTGAPDSVEIARQEIESHI 145
+ + +++G V A+ I +
Sbjct: 55 EGTLLLSRLIKISGTQKEVAAAKHLILEKV 84
Score = 34.9 bits (80), Expect = 0.002
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 4 ISRSGCKIKALRAKTNTYIK-----TPVRGEEPVFVVTGRKEDVARAKREILSAADHFSA 58
I R G I+++ + I + ++G +++VA AK IL
Sbjct: 30 IGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSEDEE 89
Query: 59 LRASRKSGALSPLS 72
LR A P S
Sbjct: 90 LRKRIAHSASGPSS 103
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1,
ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Length = 84
Score = 54.4 bits (131), Expect = 2e-10
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 85 VRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIES 143
V + V V+G KG+ IK ++ + + IV + + V G V IA + I
Sbjct: 5 VAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDRRKVSIAEEAIYL 60
Score = 36.3 bits (84), Expect = 6e-04
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 4 ISRSGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREI 49
I + G IK L+++ + I G+ + V G + V+ A+ I
Sbjct: 16 IGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDRRKVSIAEEAI 58
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 84
Score = 51.3 bits (123), Expect = 2e-09
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 83 IEVRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIE 142
I V+V + +G V+GP+G I +T T I + + V A + +
Sbjct: 5 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSM-VIVEPEAEGIPPVNLMKAA 63
Query: 143 SHIIRRTGSCVTPAEAVLNGDD 164
+++ P +A ++
Sbjct: 64 E-VVKAISLGFPPEKAFRLLEE 84
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 48.5 bits (115), Expect = 3e-08
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCDFD-RTCPMCRVPVNQAMRII 352
C +C + + + PCGH C+ C + + + CP CR + I+
Sbjct: 26 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1,
ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Length = 69
Score = 47.8 bits (114), Expect = 3e-08
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 9/67 (13%)
Query: 85 VRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGA-PDSVEIARQEI-- 141
+ + V V+G + + + ++ I T S EI + I
Sbjct: 5 IDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAIRK 61
Query: 142 ---ESHI 145
ESHI
Sbjct: 62 IENESHI 68
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum
pernix [TaxId: 56636]}
Length = 104
Score = 46.2 bits (110), Expect = 2e-07
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 90 KVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGAPDSVEIARQEIES 143
++ G ++G G + I+ T+TYI + V + G + A+Q IE
Sbjct: 22 RIKGRIIGEGGRARRTIEEMTDTYINV---GEYEVA-IIGDYERAMAAKQAIEM 71
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 43.8 bits (103), Expect = 8e-07
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 302 QCYLCNDR-EVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRII 352
+C +C + +PC H F C C R + TCP+C+VPV + I
Sbjct: 7 RCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI 57
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 44.1 bits (104), Expect = 1e-06
Identities = 14/50 (28%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 300 SRQCYLCNDREVTHALIPCGHNFFCSECAERTCDF-DRTCPMCRVPVNQA 348
S C +C C H FC C R CP CR P
Sbjct: 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFPT 71
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 42.6 bits (100), Expect = 1e-06
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345
C C L+PC H CS C E + CP+C+ P
Sbjct: 9 CQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPW 47
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 41.6 bits (98), Expect = 7e-06
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 85 VRVPYKVVGLVVGPKGATIKRIQHQTNTYIVTPSRDKEPVFEVTGA-PDSVEIARQEIES 143
V + V V+G K + +K ++ +T I + + D IA I+
Sbjct: 5 VEISPAKVPRVIGRKMSMLKTLEEKTECKIFV---ARNGRIHLECPNEDLEAIAVMAIKI 61
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 39.9 bits (93), Expect = 1e-05
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 296 SISGSRQCYLC----NDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345
++ +C +C D E L CGH F +EC + TCP+CR+ V
Sbjct: 1 AMDDGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 38.5 bits (89), Expect = 4e-05
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 4/50 (8%)
Query: 302 QCYLC----NDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQ 347
+C LC ++ CG+ D + CP CR P +
Sbjct: 2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 38.5 bits (89), Expect = 1e-04
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 302 QCYLCNDREVTHALIPCGHNFFCSECAERTCDFDR---TCPMCRVPVNQ 347
+C +C + C H FC C + + + CP+C+ + +
Sbjct: 23 ECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 37.5 bits (87), Expect = 5e-04
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 89 YKVVGLVVGPKGATIKRIQHQTNTYI 114
+ VG ++GP+G T K+++ +T I
Sbjct: 16 FNFVGRILGPRGLTAKQLEAETGCKI 41
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 35.4 bits (82), Expect = 6e-04
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 81 VTIEVRVPYKVVGLVVGPKGATIKRIQHQTNTYI 114
I V++P +G V+GPK I +IQ T I
Sbjct: 3 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEI 36
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 36.7 bits (85), Expect = 7e-04
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 81 VTIEVRVP------YKVVGLVVGPKGATIKRIQHQTNTYI 114
V+ +V +P VGL++GP+G T+K I+ + N I
Sbjct: 3 VSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKI 42
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 35.1 bits (80), Expect = 0.002
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 314 ALIPCGHNFFCSECAERTCDFDRTCPMCRVP 344
A C H F C R + CP+
Sbjct: 53 AWGVCNHAF-HFHCISRWLKTRQVCPLDNRE 82
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 32.4 bits (73), Expect = 0.009
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 301 RQCYLC----NDREVTHALIPCGHNFFCSECAERTCDFD-RTCPMCRVPVNQ 347
+ C C ++ + C C + CP C P+ +
Sbjct: 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 34.7 bits (80), Expect = 0.014
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 1 MKKISRSGC-KIKALRAKTNTYIKTPVRGEEP---VFVVTGR-KEDVARAKREILSAADH 55
+++ KIK R+ + + P V V TG ED+ +A AD
Sbjct: 120 ALSMAKETVEKIKNNRSIRESRFEEYGDKSGPLLYVIVATGNIYEDITQAVAAAKQGADV 179
Query: 56 FSALRASRKS 65
+ +R + +S
Sbjct: 180 IAVIRTTGQS 189
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 31.4 bits (70), Expect = 0.016
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 8/53 (15%)
Query: 301 RQCYLC-----NDREVTHALIPCGHNFFCSECAER--TCDFDRTCPMCRVPVN 346
C++C N+R C T + C +C V N
Sbjct: 7 PVCWICNEELGNERFRACGCTGELE-NVHRSCLSTWLTISRNTACQICGVVYN 58
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 30.9 bits (69), Expect = 0.021
Identities = 5/44 (11%), Positives = 9/44 (20%), Gaps = 2/44 (4%)
Query: 303 CYLCND-REVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345
C + F E+ P+ P+
Sbjct: 3 CAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPL 45
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 32.1 bits (72), Expect = 0.024
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 302 QCYLCNDR-EVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPV 345
+C C + L C H F CS C CP+C P
Sbjct: 24 RCSRCTNILREPVCLGGCEHIF-CSNCVSDC--IGTGCPVCYTPA 65
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 30.0 bits (66), Expect = 0.18
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 6/43 (13%)
Query: 310 EVTHALIPCGHNFFCSEC-----AERTCDFDRTCPMCRVPVNQ 347
V L C H F C D CP C+ +
Sbjct: 53 MVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 27.1 bits (59), Expect = 0.76
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 303 CYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMCRVPVNQAMRI 351
+ + + P G + + E P+ R P+ Q I
Sbjct: 10 GKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 58
>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory
protein vp16 {Herpes simplex virus type 1 [TaxId:
10298]}
Length = 356
Score = 26.0 bits (57), Expect = 7.7
Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 203 PGEFNFNMPLSSSQMNHHVFSGSSGCSSASSSSSSSACAPHSSTQLDLGSIWSGMSSLDK 262
P + N +S + + SS ++S S + H+ ++ G +
Sbjct: 276 PPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHAYSR-APTKNNYGSTI--- 331
Query: 263 DEGLGDSPSFDA 274
EGL D P DA
Sbjct: 332 -EGLLDLPDDDA 342
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 74
Score = 24.3 bits (52), Expect = 9.0
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 302 QCYLCNDREVTHALIPCGHNFFCSECAERTCDFDRTCPMC 341
C LC+D H L E+ +TC C
Sbjct: 31 TCRLCHDTNEDHQLDRFKVKEVQCINCEKLQHAQQTCEDC 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.129 0.385
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,279,828
Number of extensions: 58864
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 62
Length of query: 353
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 267
Effective length of database: 1,226,816
Effective search space: 327559872
Effective search space used: 327559872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.7 bits)