Query psy4150
Match_columns 395
No_of_seqs 413 out of 2965
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 18:11:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 5.7E-35 1.2E-39 295.7 11.0 197 25-231 246-448 (519)
2 KOG0330|consensus 100.0 2.3E-33 5E-38 269.8 10.0 208 24-256 210-423 (476)
3 KOG0333|consensus 100.0 4E-33 8.6E-38 276.2 11.5 197 24-234 402-627 (673)
4 COG0556 UvrB Helicase subunit 100.0 1.5E-32 3.2E-37 273.3 14.5 239 90-368 419-662 (663)
5 COG1111 MPH1 ERCC4-like helica 100.0 1E-31 2.2E-36 266.7 19.6 221 21-253 273-503 (542)
6 COG0513 SrmB Superfamily II DN 100.0 2.8E-32 6E-37 283.2 13.5 199 24-236 180-385 (513)
7 KOG0338|consensus 100.0 4.2E-32 9.1E-37 268.1 10.0 210 4-231 314-533 (691)
8 KOG0342|consensus 100.0 2.7E-30 5.8E-35 254.9 9.8 207 13-232 223-438 (543)
9 KOG0326|consensus 100.0 5.8E-30 1.2E-34 240.9 10.9 207 23-255 232-444 (459)
10 KOG0343|consensus 100.0 7.3E-30 1.6E-34 254.3 11.6 206 24-241 221-432 (758)
11 KOG0328|consensus 100.0 8.8E-30 1.9E-34 236.3 10.3 206 24-254 175-387 (400)
12 KOG0340|consensus 100.0 2.9E-29 6.3E-34 239.1 11.6 218 19-255 152-376 (442)
13 KOG0335|consensus 100.0 1.8E-29 4E-34 252.0 9.7 200 24-229 232-442 (482)
14 KOG0341|consensus 100.0 2.7E-29 5.9E-34 241.4 8.0 198 24-239 332-536 (610)
15 KOG0345|consensus 100.0 3.4E-28 7.3E-33 238.8 12.3 196 24-230 163-363 (567)
16 TIGR00631 uvrb excinuclease AB 99.9 4.3E-27 9.3E-32 249.4 18.2 225 98-362 426-655 (655)
17 PRK04837 ATP-dependent RNA hel 99.9 1E-27 2.3E-32 244.0 12.2 191 25-231 164-362 (423)
18 KOG0336|consensus 99.9 4E-28 8.6E-33 234.7 8.1 195 25-233 374-574 (629)
19 PTZ00110 helicase; Provisional 99.9 3.9E-27 8.4E-32 246.6 14.9 194 26-232 285-485 (545)
20 PRK11776 ATP-dependent RNA hel 99.9 3.3E-27 7.1E-32 242.8 13.6 189 26-231 155-349 (460)
21 PRK11192 ATP-dependent RNA hel 99.9 1.1E-26 2.5E-31 237.0 15.0 189 26-230 155-351 (434)
22 PRK10590 ATP-dependent RNA hel 99.9 9.7E-27 2.1E-31 239.1 14.1 205 26-255 157-367 (456)
23 KOG0332|consensus 99.9 9E-27 2E-31 223.3 12.8 188 32-235 235-447 (477)
24 KOG0354|consensus 99.9 4.5E-26 9.7E-31 237.7 18.1 205 29-241 324-538 (746)
25 PRK11634 ATP-dependent RNA hel 99.9 1.5E-26 3.2E-31 245.2 13.6 190 25-230 156-351 (629)
26 PRK04537 ATP-dependent RNA hel 99.9 2E-26 4.4E-31 242.2 14.1 190 25-230 166-363 (572)
27 PLN00206 DEAD-box ATP-dependen 99.9 2.8E-26 6.1E-31 239.0 14.2 193 25-231 277-475 (518)
28 PRK05298 excinuclease ABC subu 99.9 1.7E-25 3.8E-30 238.2 18.5 215 98-366 430-649 (652)
29 PRK01297 ATP-dependent RNA hel 99.9 1.5E-25 3.2E-30 231.4 15.2 205 26-255 245-457 (475)
30 KOG0348|consensus 99.9 3.8E-25 8.2E-30 220.1 12.1 203 25-234 294-557 (708)
31 KOG0339|consensus 99.9 1.1E-25 2.4E-30 222.6 7.3 196 24-233 376-577 (731)
32 KOG0327|consensus 99.9 2.2E-24 4.7E-29 208.2 10.6 202 26-254 177-384 (397)
33 TIGR03817 DECH_helic helicase/ 99.9 2.3E-24 5E-29 232.4 11.8 151 120-280 271-428 (742)
34 KOG4284|consensus 99.9 2E-24 4.4E-29 218.5 9.5 202 24-240 173-388 (980)
35 KOG0346|consensus 99.9 3.4E-24 7.4E-29 209.2 10.2 196 25-234 177-413 (569)
36 PTZ00424 helicase 45; Provisio 99.9 7.1E-24 1.5E-28 213.8 11.9 189 26-230 178-373 (401)
37 KOG0334|consensus 99.9 3.5E-24 7.6E-29 227.7 8.5 192 24-230 521-719 (997)
38 KOG0344|consensus 99.9 1E-23 2.2E-28 212.6 11.0 190 26-231 296-495 (593)
39 KOG0347|consensus 99.9 3.1E-23 6.8E-28 207.1 12.8 212 26-256 348-586 (731)
40 PLN03137 ATP-dependent DNA hel 99.9 1.9E-22 4.2E-27 219.1 16.8 106 120-230 680-786 (1195)
41 TIGR00614 recQ_fam ATP-depende 99.9 2E-22 4.3E-27 207.9 15.3 108 119-231 225-333 (470)
42 PRK11057 ATP-dependent DNA hel 99.9 8.3E-22 1.8E-26 209.0 17.3 110 118-232 234-344 (607)
43 PRK13766 Hef nuclease; Provisi 99.9 1.7E-21 3.6E-26 212.5 20.0 190 32-237 285-485 (773)
44 KOG0350|consensus 99.9 5.4E-22 1.2E-26 196.5 11.4 113 118-233 427-542 (620)
45 TIGR01389 recQ ATP-dependent D 99.9 7.9E-21 1.7E-25 201.3 16.9 122 96-230 208-330 (591)
46 KOG0337|consensus 99.8 1.2E-21 2.6E-26 190.7 6.8 196 25-234 171-371 (529)
47 TIGR02621 cas3_GSU0051 CRISPR- 99.8 3.6E-20 7.7E-25 198.5 13.7 183 26-228 179-388 (844)
48 PRK04914 ATP-dependent helicas 99.8 1.1E-19 2.3E-24 198.6 15.8 113 96-221 477-592 (956)
49 PHA02653 RNA helicase NPH-II; 99.8 2.1E-20 4.6E-25 198.4 9.7 191 26-232 299-515 (675)
50 TIGR01587 cas3_core CRISPR-ass 99.8 6.2E-20 1.3E-24 182.6 10.4 121 98-231 207-336 (358)
51 cd00079 HELICc Helicase superf 99.8 1E-18 2.2E-23 147.5 13.0 118 98-226 12-130 (131)
52 PRK09751 putative ATP-dependen 99.8 1.8E-19 4E-24 202.8 10.8 98 120-220 244-372 (1490)
53 PRK13767 ATP-dependent helicas 99.8 1.1E-18 2.4E-23 191.8 15.7 110 101-219 271-384 (876)
54 PRK12898 secA preprotein trans 99.8 9.6E-19 2.1E-23 183.7 13.8 127 92-231 451-586 (656)
55 COG0514 RecQ Superfamily II DN 99.8 1.3E-18 2.9E-23 179.7 14.2 110 118-232 228-338 (590)
56 PRK10689 transcription-repair 99.8 7.9E-19 1.7E-23 196.0 12.9 108 120-230 809-918 (1147)
57 PRK09200 preprotein translocas 99.8 1.2E-18 2.5E-23 186.6 13.3 130 91-233 405-543 (790)
58 TIGR00580 mfd transcription-re 99.8 6.4E-19 1.4E-23 192.9 11.4 109 120-231 660-770 (926)
59 PF00271 Helicase_C: Helicase 99.8 1.5E-18 3.2E-23 134.8 7.4 77 139-220 2-78 (78)
60 PRK10917 ATP-dependent DNA hel 99.7 2.2E-17 4.7E-22 177.4 16.6 127 96-231 453-589 (681)
61 TIGR03714 secA2 accessory Sec 99.7 1.2E-17 2.6E-22 177.5 12.9 130 90-233 400-539 (762)
62 TIGR00643 recG ATP-dependent D 99.7 5.1E-17 1.1E-21 173.2 16.8 123 99-230 433-565 (630)
63 TIGR00963 secA preprotein tran 99.7 4.7E-17 1E-21 172.2 14.2 131 91-234 382-520 (745)
64 TIGR01970 DEAH_box_HrpB ATP-de 99.7 3.4E-17 7.5E-22 177.6 11.8 109 120-231 209-336 (819)
65 PRK11131 ATP-dependent RNA hel 99.7 1.6E-17 3.5E-22 184.5 8.8 188 26-231 194-411 (1294)
66 TIGR00603 rad25 DNA repair hel 99.7 1.5E-16 3.3E-21 169.0 15.6 128 96-239 478-615 (732)
67 PRK11664 ATP-dependent RNA hel 99.7 4.3E-17 9.3E-22 177.1 10.8 110 120-232 212-340 (812)
68 PRK00254 ski2-like helicase; P 99.7 7.6E-17 1.6E-21 174.5 11.8 193 26-231 146-388 (720)
69 PRK12906 secA preprotein trans 99.7 1.6E-16 3.5E-21 169.4 12.4 131 91-234 417-556 (796)
70 PRK02362 ski2-like helicase; P 99.7 2E-16 4.4E-21 171.7 13.2 109 120-231 243-397 (737)
71 KOG0349|consensus 99.7 7.9E-17 1.7E-21 157.6 8.9 114 119-235 504-619 (725)
72 PHA02558 uvsW UvsW helicase; P 99.7 2.9E-16 6.4E-21 163.3 12.6 99 120-223 344-443 (501)
73 PRK01172 ski2-like helicase; P 99.7 2.8E-16 6.1E-21 169.0 11.7 109 120-232 236-379 (674)
74 PRK12900 secA preprotein trans 99.7 4.2E-16 9.2E-21 167.5 11.8 132 90-234 574-714 (1025)
75 COG1201 Lhr Lhr-like helicases 99.6 5.6E-16 1.2E-20 165.6 11.9 120 101-230 240-361 (814)
76 KOG0329|consensus 99.6 1.2E-16 2.6E-21 147.2 5.0 162 26-237 193-361 (387)
77 smart00490 HELICc helicase sup 99.6 8.6E-16 1.9E-20 118.8 8.2 81 135-220 2-82 (82)
78 TIGR01967 DEAH_box_HrpA ATP-de 99.6 5E-16 1.1E-20 173.1 9.3 124 99-232 263-405 (1283)
79 PRK09401 reverse gyrase; Revie 99.6 7.1E-16 1.5E-20 172.8 9.5 149 47-219 268-431 (1176)
80 TIGR03158 cas3_cyano CRISPR-as 99.6 5.7E-15 1.2E-19 147.4 11.4 87 119-217 271-357 (357)
81 COG1202 Superfamily II helicas 99.6 7.2E-15 1.6E-19 148.4 10.6 134 96-234 416-556 (830)
82 KOG0351|consensus 99.6 1E-14 2.2E-19 158.8 12.5 109 118-231 483-592 (941)
83 PLN03142 Probable chromatin-re 99.6 4.6E-14 1E-18 155.4 15.6 136 95-241 468-609 (1033)
84 TIGR01054 rgy reverse gyrase. 99.5 6.9E-14 1.5E-18 157.1 11.3 98 89-204 304-409 (1171)
85 PRK14701 reverse gyrase; Provi 99.5 2E-14 4.4E-19 164.7 6.6 113 89-220 307-444 (1638)
86 KOG0352|consensus 99.5 2.1E-13 4.5E-18 133.8 10.7 113 120-237 255-367 (641)
87 TIGR00595 priA primosomal prot 99.4 6.1E-13 1.3E-17 138.3 12.9 98 133-234 271-383 (505)
88 COG4098 comFA Superfamily II D 99.4 1.7E-12 3.7E-17 124.5 13.6 134 102-251 293-430 (441)
89 PRK09694 helicase Cas3; Provis 99.4 1.2E-12 2.7E-17 142.7 12.3 95 120-220 560-663 (878)
90 COG1061 SSL2 DNA or RNA helica 99.4 2.3E-12 4.9E-17 132.2 13.5 113 98-223 268-382 (442)
91 PRK05580 primosome assembly pr 99.4 6.8E-12 1.5E-16 134.9 14.2 104 132-238 438-555 (679)
92 COG1200 RecG RecG-like helicas 99.4 8.5E-12 1.8E-16 129.7 14.1 134 91-233 450-592 (677)
93 PRK12904 preprotein translocas 99.3 1E-11 2.2E-16 133.5 14.0 131 91-234 407-576 (830)
94 PRK13104 secA preprotein trans 99.3 1.3E-11 2.8E-16 133.0 13.0 131 90-233 420-589 (896)
95 PRK13107 preprotein translocas 99.3 3E-11 6.4E-16 130.0 13.0 130 91-233 426-593 (908)
96 COG1197 Mfd Transcription-repa 99.3 5.7E-11 1.2E-15 129.8 15.2 109 120-231 803-913 (1139)
97 COG1204 Superfamily II helicas 99.3 1.4E-11 3.1E-16 133.0 9.7 131 100-236 239-413 (766)
98 COG1205 Distinct helicase fami 99.3 1.9E-11 4.2E-16 133.6 10.8 130 98-236 290-426 (851)
99 PRK11448 hsdR type I restricti 99.2 4.1E-11 8.9E-16 134.2 12.8 106 119-229 697-812 (1123)
100 KOG4150|consensus 99.2 2.4E-11 5.3E-16 122.8 8.4 172 99-284 510-686 (1034)
101 KOG0353|consensus 99.2 7.3E-11 1.6E-15 114.5 7.7 88 119-211 316-403 (695)
102 KOG0387|consensus 99.1 1.2E-09 2.5E-14 114.6 13.8 135 96-241 528-668 (923)
103 KOG0392|consensus 99.1 9.3E-10 2E-14 119.4 13.3 157 95-254 1307-1477(1549)
104 COG1203 CRISPR-associated heli 99.0 6.1E-10 1.3E-14 120.9 10.3 104 118-229 438-548 (733)
105 KOG0385|consensus 99.0 1.4E-09 2.9E-14 113.7 11.4 135 94-239 467-607 (971)
106 KOG0384|consensus 99.0 7.8E-10 1.7E-14 120.2 8.7 130 97-237 682-817 (1373)
107 KOG0951|consensus 99.0 2E-09 4.2E-14 117.2 10.8 153 83-241 507-711 (1674)
108 KOG0952|consensus 98.9 6.5E-09 1.4E-13 111.8 11.4 121 120-241 349-500 (1230)
109 KOG0950|consensus 98.9 2.1E-09 4.6E-14 114.8 7.3 110 120-232 460-612 (1008)
110 COG1643 HrpA HrpA-like helicas 98.9 4.6E-09 9.9E-14 113.8 9.3 111 118-231 257-387 (845)
111 KOG0391|consensus 98.9 2.5E-08 5.5E-13 107.8 13.8 133 95-241 1257-1397(1958)
112 KOG0388|consensus 98.9 1.1E-08 2.3E-13 106.1 10.3 148 93-252 1023-1174(1185)
113 KOG0922|consensus 98.8 1E-08 2.3E-13 106.2 9.1 133 96-232 235-391 (674)
114 TIGR00596 rad1 DNA repair prot 98.8 4.6E-08 9.9E-13 106.4 14.2 217 33-256 193-540 (814)
115 KOG0389|consensus 98.8 5.3E-08 1.1E-12 102.3 13.5 136 95-241 758-898 (941)
116 KOG1002|consensus 98.7 1.2E-07 2.5E-12 95.3 11.8 150 96-254 618-772 (791)
117 PRK12903 secA preprotein trans 98.7 1.6E-07 3.5E-12 100.9 13.1 129 91-233 403-541 (925)
118 KOG0923|consensus 98.7 3.9E-08 8.5E-13 101.6 7.8 138 91-232 445-607 (902)
119 COG0553 HepA Superfamily II DN 98.7 2.8E-07 6.2E-12 101.6 15.2 145 98-253 692-844 (866)
120 KOG0390|consensus 98.6 3.1E-07 6.8E-12 98.2 13.7 130 98-237 578-713 (776)
121 COG1198 PriA Primosomal protei 98.6 2.6E-07 5.7E-12 98.9 12.7 121 133-255 493-627 (730)
122 KOG0953|consensus 98.6 5.7E-07 1.2E-11 91.7 12.2 143 66-220 309-462 (700)
123 KOG0920|consensus 98.5 1.3E-07 2.9E-12 102.6 7.7 128 99-233 396-546 (924)
124 KOG0924|consensus 98.5 1.4E-07 3.1E-12 97.7 6.8 135 96-234 540-700 (1042)
125 PRK12326 preprotein translocas 98.5 9.7E-07 2.1E-11 93.8 13.0 130 90-233 403-549 (764)
126 KOG0947|consensus 98.5 3.2E-07 6.9E-12 98.2 9.1 108 120-231 567-723 (1248)
127 KOG1123|consensus 98.5 1.9E-06 4.1E-11 87.0 13.1 129 94-238 523-660 (776)
128 KOG0948|consensus 98.4 8.2E-07 1.8E-11 93.1 8.4 113 119-234 382-542 (1041)
129 TIGR01407 dinG_rel DnaQ family 98.4 3.3E-06 7.2E-11 93.5 13.3 118 102-228 661-811 (850)
130 PRK12901 secA preprotein trans 98.3 4E-06 8.7E-11 91.7 12.5 131 90-234 604-744 (1112)
131 PRK12899 secA preprotein trans 98.3 4.7E-06 1E-10 90.8 12.8 129 91-234 545-684 (970)
132 KOG1000|consensus 98.3 4.5E-06 9.8E-11 84.2 10.6 146 96-248 470-620 (689)
133 TIGR00348 hsdR type I site-spe 98.3 5.7E-06 1.2E-10 89.3 11.8 119 99-219 494-634 (667)
134 PRK13103 secA preprotein trans 98.3 6.4E-06 1.4E-10 89.6 11.6 131 90-234 425-594 (913)
135 PF13307 Helicase_C_2: Helicas 98.2 4.6E-06 1E-10 74.4 8.1 108 119-231 8-149 (167)
136 KOG1015|consensus 98.2 5.1E-06 1.1E-10 89.0 9.0 135 96-239 1124-1285(1567)
137 COG4096 HsdR Type I site-speci 98.1 1.4E-05 3E-10 85.4 9.5 115 100-219 406-525 (875)
138 KOG0949|consensus 98.1 8.4E-06 1.8E-10 87.8 7.8 74 157-230 970-1047(1330)
139 KOG0386|consensus 98.0 1.6E-05 3.5E-10 85.9 9.3 133 95-238 707-845 (1157)
140 COG1110 Reverse gyrase [DNA re 98.0 1.6E-05 3.5E-10 86.3 9.1 96 89-204 314-417 (1187)
141 KOG0926|consensus 98.0 2.6E-06 5.6E-11 90.0 2.9 82 147-231 605-704 (1172)
142 CHL00122 secA preprotein trans 98.0 5.8E-05 1.3E-09 81.9 13.1 89 91-192 401-491 (870)
143 PRK08074 bifunctional ATP-depe 97.9 0.00013 2.8E-09 81.7 12.7 96 101-204 738-835 (928)
144 KOG4439|consensus 97.8 0.00023 5.1E-09 74.7 13.0 136 96-241 727-868 (901)
145 KOG0925|consensus 97.8 6.3E-05 1.4E-09 76.0 8.3 131 93-231 227-387 (699)
146 COG1199 DinG Rad3-related DNA 97.8 0.00016 3.5E-09 78.0 11.5 118 99-228 463-614 (654)
147 PRK12902 secA preprotein trans 97.7 0.00051 1.1E-08 74.9 13.8 89 91-192 416-506 (939)
148 PF02151 UVR: UvrB/uvrC motif; 97.7 2E-05 4.4E-10 51.9 1.7 35 328-364 2-36 (36)
149 COG4581 Superfamily II RNA hel 97.7 8.3E-05 1.8E-09 82.2 7.4 115 119-233 378-539 (1041)
150 PRK11747 dinG ATP-dependent DN 97.6 0.00041 8.9E-09 75.4 12.2 91 100-204 520-616 (697)
151 COG4889 Predicted helicase [Ge 97.5 4.7E-05 1E-09 81.5 2.9 100 120-220 460-573 (1518)
152 PRK07246 bifunctional ATP-depe 97.5 0.0013 2.7E-08 72.8 13.1 88 102-203 635-724 (820)
153 TIGR00604 rad3 DNA repair heli 97.2 0.0036 7.8E-08 68.3 12.9 96 100-204 507-615 (705)
154 TIGR03117 cas_csf4 CRISPR-asso 97.1 0.0081 1.7E-07 64.3 14.2 90 103-204 458-561 (636)
155 smart00492 HELICc3 helicase su 97.1 0.0043 9.3E-08 53.9 9.5 47 158-204 30-79 (141)
156 smart00491 HELICc2 helicase su 96.9 0.005 1.1E-07 53.5 8.5 42 163-204 32-80 (142)
157 TIGR02562 cas3_yersinia CRISPR 96.9 0.0036 7.7E-08 69.5 9.1 92 124-221 760-881 (1110)
158 PF13871 Helicase_C_4: Helicas 96.7 0.0067 1.4E-07 58.4 8.6 82 166-247 52-144 (278)
159 COG0653 SecA Preprotein transl 96.6 0.0048 1E-07 67.0 7.3 125 91-229 406-543 (822)
160 PRK14873 primosome assembly pr 96.4 0.014 3E-07 63.1 9.2 79 133-227 440-535 (665)
161 KOG1001|consensus 96.4 0.0017 3.7E-08 69.8 2.1 135 97-241 521-660 (674)
162 PRK10917 ATP-dependent DNA hel 96.4 0.019 4.1E-07 62.5 10.1 100 95-203 291-393 (681)
163 KOG0701|consensus 96.4 0.0015 3.2E-08 75.3 1.6 97 122-219 294-398 (1606)
164 PF06862 DUF1253: Protein of u 96.3 0.056 1.2E-06 55.4 12.4 124 99-230 282-414 (442)
165 PRK05580 primosome assembly pr 96.1 0.049 1.1E-06 59.3 11.4 98 95-203 171-268 (679)
166 TIGR00595 priA primosomal prot 96.0 0.044 9.6E-07 57.5 10.7 97 95-202 6-102 (505)
167 KOG1016|consensus 96.0 0.0048 1E-07 65.8 3.3 115 98-221 703-836 (1387)
168 TIGR00643 recG ATP-dependent D 95.9 0.048 1E-06 58.8 10.2 81 120-203 284-367 (630)
169 PRK14873 primosome assembly pr 95.4 0.078 1.7E-06 57.4 9.7 97 96-202 170-266 (665)
170 TIGR00580 mfd transcription-re 95.3 0.1 2.3E-06 58.5 10.4 99 95-202 481-582 (926)
171 PRK10689 transcription-repair 94.5 0.22 4.8E-06 57.2 10.5 97 95-200 630-729 (1147)
172 COG1200 RecG RecG-like helicas 94.3 0.34 7.4E-06 51.7 10.6 87 119-218 310-401 (677)
173 COG1198 PriA Primosomal protei 94.3 0.11 2.3E-06 56.6 7.1 94 94-198 225-318 (730)
174 KOG0921|consensus 94.1 0.053 1.1E-06 59.1 4.3 109 118-229 641-772 (1282)
175 PF02399 Herpes_ori_bp: Origin 93.5 0.35 7.6E-06 52.8 9.1 100 120-230 282-387 (824)
176 PRK07883 hypothetical protein; 93.3 0.067 1.4E-06 56.8 3.4 38 328-367 406-443 (557)
177 COG0513 SrmB Superfamily II DN 93.0 0.21 4.6E-06 52.5 6.5 70 123-199 102-180 (513)
178 PRK00558 uvrC excinuclease ABC 92.9 0.074 1.6E-06 56.9 3.1 38 328-367 202-239 (598)
179 COG1110 Reverse gyrase [DNA re 92.9 0.28 6E-06 54.5 7.3 62 119-184 124-190 (1187)
180 COG1197 Mfd Transcription-repa 92.1 0.47 1E-05 53.6 7.9 79 118-199 641-722 (1139)
181 PRK12306 uvrC excinuclease ABC 91.5 0.11 2.5E-06 54.4 2.4 37 328-366 192-228 (519)
182 TIGR00194 uvrC excinuclease AB 91.4 0.12 2.6E-06 54.9 2.5 38 328-367 194-231 (574)
183 PRK14671 uvrC excinuclease ABC 91.3 0.11 2.3E-06 55.8 2.0 37 328-366 215-251 (621)
184 PRK14670 uvrC excinuclease ABC 91.2 0.11 2.3E-06 55.2 1.8 37 328-366 177-213 (574)
185 PRK11192 ATP-dependent RNA hel 91.2 1.4 3E-05 45.1 9.9 77 119-202 72-156 (434)
186 PRK14669 uvrC excinuclease ABC 91.2 0.11 2.5E-06 55.6 2.0 38 328-367 203-240 (624)
187 PRK14667 uvrC excinuclease ABC 91.1 0.11 2.5E-06 55.0 1.9 38 328-367 199-236 (567)
188 PRK14666 uvrC excinuclease ABC 91.1 0.13 2.7E-06 55.5 2.2 37 328-366 201-237 (694)
189 COG3880 Modulator of heat shoc 90.9 0.22 4.7E-06 43.9 3.1 38 328-367 136-173 (176)
190 COG0322 UvrC Nuclease subunit 90.8 0.17 3.7E-06 53.7 2.9 42 328-371 202-243 (581)
191 PRK14672 uvrC excinuclease ABC 90.6 0.14 3E-06 55.0 1.9 37 328-366 205-241 (691)
192 PRK14668 uvrC excinuclease ABC 90.2 0.19 4.1E-06 53.5 2.5 37 328-366 199-235 (577)
193 PRK14701 reverse gyrase; Provi 90.1 0.76 1.6E-05 54.6 7.5 62 120-184 122-187 (1638)
194 cd00268 DEADc DEAD-box helicas 90.0 3.3 7.1E-05 37.2 10.3 100 95-203 45-153 (203)
195 KOG0331|consensus 89.9 2 4.4E-05 44.9 9.7 94 118-218 163-272 (519)
196 KOG1513|consensus 89.6 0.48 1E-05 51.4 4.9 78 169-246 851-939 (1300)
197 PRK11776 ATP-dependent RNA hel 89.5 1.7 3.7E-05 44.8 8.9 99 94-202 49-156 (460)
198 KOG0298|consensus 89.4 0.56 1.2E-05 53.1 5.5 114 118-241 1219-1336(1394)
199 KOG0347|consensus 89.1 0.74 1.6E-05 48.1 5.7 54 123-183 266-321 (731)
200 KOG0951|consensus 88.7 1.9 4E-05 49.3 8.7 110 119-232 1358-1495(1674)
201 TIGR01054 rgy reverse gyrase. 88.5 1.5 3.3E-05 50.7 8.3 61 120-183 121-186 (1171)
202 TIGR00614 recQ_fam ATP-depende 88.2 1.5 3.2E-05 45.6 7.4 78 120-202 51-136 (470)
203 PRK04537 ATP-dependent RNA hel 87.4 1.3 2.8E-05 47.3 6.6 76 120-202 84-168 (572)
204 KOG2340|consensus 87.3 2.6 5.7E-05 43.9 8.3 124 98-230 534-667 (698)
205 PRK11634 ATP-dependent RNA hel 87.2 3.4 7.4E-05 44.6 9.7 96 94-199 51-155 (629)
206 PF10593 Z1: Z1 domain; Inter 86.6 2.3 5E-05 40.2 7.1 98 133-241 100-202 (239)
207 PF04364 DNA_pol3_chi: DNA pol 85.9 6.9 0.00015 33.6 9.2 92 91-204 5-97 (137)
208 TIGR01389 recQ ATP-dependent D 85.9 3.8 8.2E-05 43.8 9.2 59 120-183 53-111 (591)
209 PRK10590 ATP-dependent RNA hel 85.6 2.6 5.5E-05 43.6 7.5 76 121-203 76-159 (456)
210 PF00270 DEAD: DEAD/DEAH box h 84.1 9.4 0.0002 32.8 9.4 79 94-183 22-103 (169)
211 PRK09401 reverse gyrase; Revie 83.5 6 0.00013 45.9 9.9 82 119-202 122-210 (1176)
212 PRK04837 ATP-dependent RNA hel 83.3 4.1 8.9E-05 41.5 7.8 77 120-203 83-167 (423)
213 PTZ00110 helicase; Provisional 82.2 3.9 8.5E-05 43.4 7.3 77 120-203 203-287 (545)
214 KOG0343|consensus 81.7 4.5 9.7E-05 42.6 7.1 75 100-183 121-198 (758)
215 KOG1133|consensus 81.3 12 0.00027 40.3 10.3 95 99-204 613-720 (821)
216 PRK01297 ATP-dependent RNA hel 80.7 6.4 0.00014 40.8 8.2 78 120-203 162-247 (475)
217 PRK11057 ATP-dependent DNA hel 78.9 9.6 0.00021 41.0 9.0 58 121-183 66-123 (607)
218 KOG0389|consensus 77.5 9.3 0.0002 41.8 8.1 63 118-186 446-511 (941)
219 PLN03137 ATP-dependent DNA hel 77.2 12 0.00026 43.1 9.2 59 120-183 500-560 (1195)
220 KOG0338|consensus 77.1 6.2 0.00013 41.2 6.4 101 95-203 227-337 (691)
221 cd00046 DEXDc DEAD-like helica 75.8 23 0.00049 28.4 8.7 78 96-184 10-88 (144)
222 PRK13766 Hef nuclease; Provisi 75.3 16 0.00034 40.4 9.7 97 95-204 38-142 (773)
223 smart00487 DEXDc DEAD-like hel 75.3 16 0.00034 31.6 8.0 94 95-199 33-135 (201)
224 KOG0330|consensus 73.9 14 0.00031 37.3 7.8 90 97-197 109-208 (476)
225 KOG0339|consensus 72.8 10 0.00022 39.6 6.7 100 95-201 269-378 (731)
226 PF11496 HDA2-3: Class II hist 72.7 28 0.0006 34.1 9.6 138 94-237 92-251 (297)
227 COG3587 Restriction endonuclea 70.4 9.7 0.00021 42.1 6.2 46 174-219 482-527 (985)
228 KOG0383|consensus 70.2 3 6.5E-05 45.2 2.4 80 97-188 614-696 (696)
229 KOG0329|consensus 70.1 8.7 0.00019 36.7 5.1 90 120-216 110-213 (387)
230 KOG0345|consensus 67.9 38 0.00082 35.2 9.4 102 94-202 51-166 (567)
231 PRK15483 type III restriction- 64.1 18 0.0004 40.9 7.0 45 175-219 501-545 (986)
232 PLN00206 DEAD-box ATP-dependen 60.7 24 0.00053 37.1 7.0 78 119-203 195-280 (518)
233 PTZ00424 helicase 45; Provisio 60.4 69 0.0015 32.0 10.1 99 95-203 74-180 (401)
234 PRK02362 ski2-like helicase; P 60.3 24 0.00052 38.9 7.2 94 94-203 47-147 (737)
235 KOG0350|consensus 59.6 18 0.00039 37.8 5.5 82 120-203 215-305 (620)
236 TIGR00696 wecB_tagA_cpsF bacte 58.3 89 0.0019 28.0 9.3 57 120-179 48-104 (177)
237 cd00032 CASc Caspase, interleu 57.1 1.2E+02 0.0027 28.3 10.6 85 119-214 8-108 (243)
238 TIGR00963 secA preprotein tran 57.0 46 0.00099 36.7 8.4 56 120-184 97-154 (745)
239 KOG0385|consensus 56.7 44 0.00096 36.8 8.0 59 118-182 215-274 (971)
240 cd01524 RHOD_Pyr_redox Member 56.6 14 0.00031 28.6 3.4 37 119-160 50-86 (90)
241 COG1111 MPH1 ERCC4-like helica 55.5 58 0.0013 34.1 8.4 94 98-204 41-142 (542)
242 TIGR00631 uvrb excinuclease AB 55.0 72 0.0016 34.8 9.6 108 95-211 38-171 (655)
243 TIGR03817 DECH_helic helicase/ 55.0 59 0.0013 36.0 9.0 96 95-203 60-167 (742)
244 COG0610 Type I site-specific r 53.9 47 0.001 37.9 8.2 56 163-219 579-636 (962)
245 PRK00254 ski2-like helicase; P 53.8 42 0.00092 36.9 7.7 94 94-203 47-148 (720)
246 PRK09751 putative ATP-dependen 53.7 56 0.0012 39.0 8.9 76 120-202 37-133 (1490)
247 COG4098 comFA Superfamily II D 53.5 62 0.0014 32.4 7.8 113 93-228 123-240 (441)
248 PF03808 Glyco_tran_WecB: Glyc 51.9 1.1E+02 0.0024 27.1 8.8 58 120-180 48-106 (172)
249 TIGR02621 cas3_GSU0051 CRISPR- 51.8 27 0.00059 39.0 5.7 56 120-182 61-142 (844)
250 cd01523 RHOD_Lact_B Member of 51.6 14 0.00031 29.1 2.8 37 119-160 60-96 (100)
251 smart00115 CASc Caspase, inter 51.1 1.1E+02 0.0024 28.6 9.2 85 118-213 6-106 (241)
252 PRK05728 DNA polymerase III su 50.6 46 0.001 28.7 5.9 83 96-202 11-94 (142)
253 cd06533 Glyco_transf_WecG_TagA 49.9 1.3E+02 0.0028 26.6 8.9 58 120-180 46-104 (171)
254 PF01751 Toprim: Toprim domain 49.4 36 0.00078 27.1 4.8 66 123-190 1-75 (100)
255 KOG0335|consensus 49.0 38 0.00082 35.3 5.9 93 100-199 126-232 (482)
256 COG0514 RecQ Superfamily II DN 48.8 39 0.00084 36.2 6.1 58 121-183 58-115 (590)
257 KOG0340|consensus 47.8 46 0.00099 33.5 6.0 62 115-183 70-133 (442)
258 KOG0342|consensus 46.7 81 0.0018 33.0 7.7 59 118-183 152-213 (543)
259 PF12344 UvrB: Ultra-violet re 46.6 12 0.00027 25.6 1.4 39 235-273 4-42 (44)
260 PRK13767 ATP-dependent helicas 46.4 45 0.00099 37.6 6.6 76 120-202 84-181 (876)
261 smart00450 RHOD Rhodanese Homo 46.1 22 0.00047 27.1 3.0 38 118-160 54-92 (100)
262 PRK12898 secA preprotein trans 45.7 54 0.0012 35.7 6.7 61 120-192 144-208 (656)
263 PRK01172 ski2-like helicase; P 44.7 71 0.0015 34.8 7.6 93 94-202 45-144 (674)
264 cd01529 4RHOD_Repeats Member o 43.6 35 0.00077 26.6 3.9 35 118-154 54-89 (96)
265 PRK13104 secA preprotein trans 43.2 61 0.0013 36.5 6.8 56 120-184 123-180 (896)
266 PRK12899 secA preprotein trans 42.4 91 0.002 35.4 7.9 76 93-184 114-192 (970)
267 PRK05298 excinuclease ABC subu 41.3 1.6E+02 0.0035 32.0 9.7 93 120-212 57-175 (652)
268 cd01526 RHOD_ThiF Member of th 40.3 23 0.0005 29.2 2.4 37 119-160 71-109 (122)
269 PRK09189 uroporphyrinogen-III 40.3 58 0.0013 30.2 5.4 76 99-183 103-178 (240)
270 COG2927 HolC DNA polymerase II 39.5 87 0.0019 27.2 5.8 91 91-203 5-96 (144)
271 PRK13103 secA preprotein trans 39.0 1.7E+02 0.0037 33.1 9.4 61 119-191 122-186 (913)
272 COG1205 Distinct helicase fami 38.4 1.5E+02 0.0033 33.4 9.1 114 95-219 94-228 (851)
273 PF13245 AAA_19: Part of AAA d 38.2 92 0.002 23.6 5.3 44 95-140 19-62 (76)
274 cd01518 RHOD_YceA Member of th 37.0 34 0.00074 26.9 2.8 34 119-154 60-94 (101)
275 PF14617 CMS1: U3-containing 9 36.8 99 0.0022 29.5 6.3 75 119-198 125-206 (252)
276 PRK10310 PTS system galactitol 36.7 1.6E+02 0.0035 23.3 6.7 62 122-195 4-71 (94)
277 cd08171 GlyDH-like2 Glycerol d 36.3 2.6E+02 0.0057 27.6 9.7 15 166-180 69-83 (345)
278 smart00493 TOPRIM topoisomeras 35.9 1.5E+02 0.0032 21.8 6.1 58 123-187 2-59 (76)
279 cd01527 RHOD_YgaP Member of th 35.3 45 0.00097 26.0 3.3 35 119-154 53-87 (99)
280 PRK06646 DNA polymerase III su 35.0 1.1E+02 0.0024 26.9 5.9 84 95-202 10-93 (154)
281 cd01533 4RHOD_Repeat_2 Member 35.0 39 0.00085 27.1 2.9 37 119-160 65-103 (109)
282 KOG1802|consensus 33.9 2.1E+02 0.0046 31.3 8.6 50 98-154 437-486 (935)
283 PF02670 DXP_reductoisom: 1-de 33.8 2.6E+02 0.0056 23.8 7.8 75 95-190 31-105 (129)
284 KOG1132|consensus 33.8 3.5E+02 0.0075 30.6 10.4 96 100-204 546-656 (945)
285 cd08185 Fe-ADH1 Iron-containin 33.7 2.5E+02 0.0055 28.1 9.1 78 94-182 8-90 (380)
286 cd01534 4RHOD_Repeat_3 Member 33.0 42 0.00091 26.1 2.7 35 120-159 56-90 (95)
287 cd01521 RHOD_PspE2 Member of t 32.3 47 0.001 26.7 3.0 36 119-159 63-100 (110)
288 cd01528 RHOD_2 Member of the R 32.3 46 0.00099 26.2 2.9 36 120-160 58-94 (101)
289 PHA03371 circ protein; Provisi 32.2 39 0.00085 31.5 2.7 42 184-225 29-84 (240)
290 cd08194 Fe-ADH6 Iron-containin 32.2 3.4E+02 0.0073 27.2 9.7 79 94-182 5-87 (375)
291 cd08187 BDH Butanol dehydrogen 31.2 3.3E+02 0.0071 27.3 9.5 78 94-182 11-93 (382)
292 PRK09200 preprotein translocas 30.9 1E+02 0.0022 34.4 6.1 53 120-183 119-176 (790)
293 cd00158 RHOD Rhodanese Homolog 30.8 65 0.0014 23.9 3.4 36 118-154 48-83 (89)
294 cd01520 RHOD_YbbB Member of th 30.6 45 0.00097 27.8 2.7 38 118-160 84-122 (128)
295 KOG0352|consensus 30.2 80 0.0017 32.6 4.7 58 121-183 62-121 (641)
296 cd01447 Polysulfide_ST Polysul 30.0 40 0.00087 26.3 2.2 34 119-154 60-94 (103)
297 cd01532 4RHOD_Repeat_1 Member 28.6 65 0.0014 24.9 3.1 36 120-160 50-88 (92)
298 KOG0386|consensus 28.5 88 0.0019 35.6 5.0 57 120-182 444-500 (1157)
299 cd01519 RHOD_HSP67B2 Member of 28.2 57 0.0012 25.6 2.8 34 119-154 65-99 (106)
300 KOG0334|consensus 27.9 96 0.0021 35.2 5.2 57 120-183 438-496 (997)
301 PRK09860 putative alcohol dehy 27.2 3.7E+02 0.0079 27.1 9.0 78 95-182 14-95 (383)
302 COG0052 RpsB Ribosomal protein 27.1 1.4E+02 0.003 28.5 5.4 39 98-143 48-86 (252)
303 cd01444 GlpE_ST GlpE sulfurtra 27.0 60 0.0013 24.9 2.7 34 119-154 55-89 (96)
304 cd01525 RHOD_Kc Member of the 26.1 63 0.0014 25.4 2.7 36 120-160 65-101 (105)
305 PRK12904 preprotein translocas 26.1 2.5E+02 0.0053 31.6 7.9 54 120-184 122-179 (830)
306 cd01449 TST_Repeat_2 Thiosulfa 25.5 78 0.0017 25.5 3.2 34 119-154 77-111 (118)
307 cd08193 HVD 5-hydroxyvalerate 25.4 4.6E+02 0.01 26.1 9.4 78 95-182 9-90 (376)
308 COG5509 Uncharacterized small 25.2 55 0.0012 24.0 1.9 26 342-370 28-53 (65)
309 cd08550 GlyDH-like Glycerol_de 25.1 4.2E+02 0.009 26.2 8.9 62 123-191 54-117 (349)
310 cd08189 Fe-ADH5 Iron-containin 25.1 5.5E+02 0.012 25.6 9.9 79 94-182 8-90 (374)
311 cd01080 NAD_bind_m-THF_DH_Cycl 24.9 4.7E+02 0.01 23.1 8.3 93 99-207 27-122 (168)
312 KOG0351|consensus 24.8 1.4E+02 0.0031 34.0 5.9 58 121-183 305-364 (941)
313 COG1204 Superfamily II helicas 24.8 2E+02 0.0044 32.0 7.1 84 120-215 76-176 (766)
314 KOG0337|consensus 24.7 1.6E+02 0.0035 30.4 5.7 75 118-199 88-170 (529)
315 PF07652 Flavi_DEAD: Flaviviru 24.2 1.5E+02 0.0032 26.0 4.7 98 96-214 14-116 (148)
316 cd01535 4RHOD_Repeat_4 Member 23.8 1.5E+02 0.0033 25.4 4.8 38 119-160 48-85 (145)
317 cd03028 GRX_PICOT_like Glutare 23.8 3.4E+02 0.0074 20.9 6.5 31 120-152 7-43 (90)
318 cd08551 Fe-ADH iron-containing 23.7 5.8E+02 0.013 25.3 9.7 47 134-182 41-87 (370)
319 COG0353 RecR Recombinational D 23.7 3E+02 0.0066 25.2 6.8 67 119-188 77-149 (198)
320 PRK06827 phosphoribosylpyropho 23.5 1.5E+02 0.0033 30.0 5.4 62 120-185 264-329 (382)
321 COG0634 Hpt Hypoxanthine-guani 23.5 72 0.0016 28.7 2.7 87 98-191 19-109 (178)
322 cd01448 TST_Repeat_1 Thiosulfa 23.4 77 0.0017 25.7 2.8 37 119-160 78-116 (122)
323 cd08186 Fe-ADH8 Iron-containin 23.4 6E+02 0.013 25.4 9.8 80 96-182 7-91 (383)
324 PHA02558 uvsW UvsW helicase; P 23.3 3.3E+02 0.0072 28.4 8.1 90 94-202 137-231 (501)
325 KOG0701|consensus 23.3 29 0.00063 41.3 0.3 60 158-217 704-763 (1606)
326 PRK05928 hemD uroporphyrinogen 23.3 1.4E+02 0.003 27.3 4.8 61 120-183 125-185 (249)
327 PF00465 Fe-ADH: Iron-containi 23.2 2.3E+02 0.0049 28.2 6.6 59 122-182 23-85 (366)
328 PF02602 HEM4: Uroporphyrinoge 22.7 79 0.0017 28.8 3.0 89 99-217 103-191 (231)
329 TIGR02313 HpaI-NOT-DapA 2,4-di 22.7 2.2E+02 0.0048 27.5 6.2 50 131-182 21-76 (294)
330 PHA02653 RNA helicase NPH-II; 22.7 3.1E+02 0.0067 30.1 7.9 75 120-203 222-301 (675)
331 TIGR03714 secA2 accessory Sec 22.6 3.5E+02 0.0076 30.2 8.2 57 120-184 111-173 (762)
332 PRK05320 rhodanese superfamily 22.1 1.6E+02 0.0034 28.1 5.0 38 119-161 174-212 (257)
333 COG3089 Uncharacterized protei 22.1 96 0.0021 23.2 2.6 51 158-231 7-58 (72)
334 cd08170 GlyDH Glycerol dehydro 21.6 6.9E+02 0.015 24.5 9.7 24 158-181 60-83 (351)
335 PRK10628 LigB family dioxygena 21.4 1.4E+02 0.0029 28.5 4.3 45 181-225 86-143 (246)
336 PRK10287 thiosulfate:cyanide s 21.3 1.2E+02 0.0026 24.5 3.5 33 120-154 60-92 (104)
337 cd08181 PPD-like 1,3-propanedi 21.3 5.6E+02 0.012 25.4 9.0 18 164-181 72-89 (357)
338 TIGR03249 KdgD 5-dehydro-4-deo 21.2 2.3E+02 0.005 27.3 6.0 49 132-182 27-81 (296)
339 cd08184 Fe-ADH3 Iron-containin 21.1 6.9E+02 0.015 24.8 9.5 59 122-182 27-88 (347)
340 cd00408 DHDPS-like Dihydrodipi 20.9 2.6E+02 0.0056 26.5 6.3 49 132-182 19-73 (281)
341 cd08192 Fe-ADH7 Iron-containin 20.9 5.9E+02 0.013 25.3 9.1 79 94-182 6-88 (370)
342 TIGR00674 dapA dihydrodipicoli 20.9 2.6E+02 0.0056 26.8 6.3 49 132-182 20-74 (285)
343 COG4019 Uncharacterized protei 20.8 3E+02 0.0064 23.5 5.6 81 120-229 36-116 (156)
344 PRK10858 nitrogen regulatory p 20.7 1.9E+02 0.0041 23.9 4.5 33 196-228 63-95 (112)
345 cd05212 NAD_bind_m-THF_DH_Cycl 20.5 3.3E+02 0.0072 23.3 6.2 50 99-154 11-60 (140)
346 cd08191 HHD 6-hydroxyhexanoate 20.3 6E+02 0.013 25.5 9.1 77 95-182 6-86 (386)
347 cd03418 GRX_GRXb_1_3_like Glut 20.2 3.4E+02 0.0074 19.5 6.8 43 123-170 2-45 (75)
348 PRK01415 hypothetical protein; 20.1 1.7E+02 0.0036 27.8 4.6 38 118-160 169-207 (247)
349 cd00952 CHBPH_aldolase Trans-o 20.1 2.6E+02 0.0056 27.3 6.2 48 133-182 31-84 (309)
350 PRK11070 ssDNA exonuclease Rec 20.1 4.9E+02 0.011 28.0 8.6 76 99-186 54-138 (575)
No 1
>KOG0331|consensus
Probab=100.00 E-value=5.7e-35 Score=295.66 Aligned_cols=197 Identities=25% Similarity=0.292 Sum_probs=162.4
Q ss_pred HHHHHHHhcchHHHHHHHHhC---CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccc-cceeeeccccH
Q psy4150 25 IQRDFHVTHSLASALENLVTY---GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINI-MSSEYAWSHLK 99 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~---g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~K 99 (395)
-|||.|++|||.++++.|..+ ..+|+++||||.|.++. ....++.++.-+.+..........+. .....+....|
T Consensus 246 DEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K 325 (519)
T KOG0331|consen 246 DEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAK 325 (519)
T ss_pred ccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHH
Confidence 399999999999999999886 45789999999999985 33455555544433322211111111 11112335668
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...|..+|..+.. ..++|+||||+|++.|+.|+..|+..+ +.+..||| +.+|.+|..+|+.|++|++.||
T Consensus 326 ~~~l~~lL~~~~~-----~~~~KvIIFc~tkr~~~~l~~~l~~~~--~~a~~iHG---d~sQ~eR~~~L~~FreG~~~vL 395 (519)
T KOG0331|consen 326 LRKLGKLLEDISS-----DSEGKVIIFCETKRTCDELARNLRRKG--WPAVAIHG---DKSQSERDWVLKGFREGKSPVL 395 (519)
T ss_pred HHHHHHHHHHHhc-----cCCCcEEEEecchhhHHHHHHHHHhcC--cceeeecc---cccHHHHHHHHHhcccCCcceE
Confidence 8999999988752 467899999999999999999999998 99999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|||||++||||||+|++|||||+|.++++|+||+|||||+| .|.++.|++..
T Consensus 396 VATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~ 448 (519)
T KOG0331|consen 396 VATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSD 448 (519)
T ss_pred EEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHH
Confidence 99999999999999999999999999999999999999985 78889888764
No 2
>KOG0330|consensus
Probab=100.00 E-value=2.3e-33 Score=269.76 Aligned_cols=208 Identities=20% Similarity=0.265 Sum_probs=166.9
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccccc-ccccCChhHHHHHHhhcccccccccceeee--cccc
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDGSC-PILGKDNDLQNLLQQLKPKLDINIMSSEYA--WSHL 98 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~~~-~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~ 98 (395)
|-|||..++|.|.+.++.+... .-|++++|||||+..++.. +..+.+|.-+..-.... ....+.|.|. ....
T Consensus 210 lDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~---tv~~lkQ~ylfv~~k~ 286 (476)
T KOG0330|consen 210 LDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQ---TVDHLKQTYLFVPGKD 286 (476)
T ss_pred hchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhc---chHHhhhheEeccccc
Confidence 4499999999999998887774 5689999999999988432 22223332111111100 0111333444 4556
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|-..|..||.+. .+..+||||+|+.+++.++-.|+..| +.+..+|| .|++..|...++.|++|.++|
T Consensus 287 K~~yLV~ll~e~--------~g~s~iVF~~t~~tt~~la~~L~~lg--~~a~~LhG---qmsq~~Rlg~l~~Fk~~~r~i 353 (476)
T KOG0330|consen 287 KDTYLVYLLNEL--------AGNSVIVFCNTCNTTRFLALLLRNLG--FQAIPLHG---QMSQSKRLGALNKFKAGARSI 353 (476)
T ss_pred cchhHHHHHHhh--------cCCcEEEEEeccchHHHHHHHHHhcC--cceecccc---hhhHHHHHHHHHHHhccCCcE
Confidence 888899998874 35889999999999999999999999 99999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHHHcccc
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKS 256 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~~~~ 256 (395)
||||||++||+|+|.|++|||||.|.+..+||||+||+||+| +|.++.+++..+- +.+..|+..++.+.
T Consensus 354 Lv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv---------e~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 354 LVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDV---------ELVQRIEHALGKKL 423 (476)
T ss_pred EEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhh---------HHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999996 8999999987332 33577888887754
No 3
>KOG0333|consensus
Probab=100.00 E-value=4e-33 Score=276.21 Aligned_cols=197 Identities=24% Similarity=0.338 Sum_probs=165.6
Q ss_pred hHHHHHHHhcchHHHHHHHHhC---------------------------CCcchhhhccccCcccc-ccccccCChhHHH
Q psy4150 24 MIQRDFHVTHSLASALENLVTY---------------------------GLRSFYNNLVEVSKEDG-SCPILGKDNDLQN 75 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~---------------------------g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~ 75 (395)
+.|+|.|++|||.+++..++++ .+||+++|+||+|+.+. .++.++.+|-++.
T Consensus 402 ldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vt 481 (673)
T KOG0333|consen 402 LDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVT 481 (673)
T ss_pred ccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEE
Confidence 4489999999999987776652 13889999999998774 5667777775554
Q ss_pred HHHhhcccccccccceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEecc
Q psy4150 76 LLQQLKPKLDINIMSSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ 155 (395)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~ 155 (395)
+-....+..... ..-.+...+.|+.+|.++|...+ ..++|||+|+++.|+.|++.|.+.| +++..|||
T Consensus 482 ig~~gk~~~rve-Q~v~m~~ed~k~kkL~eil~~~~--------~ppiIIFvN~kk~~d~lAk~LeK~g--~~~~tlHg- 549 (673)
T KOG0333|consen 482 IGSAGKPTPRVE-QKVEMVSEDEKRKKLIEILESNF--------DPPIIIFVNTKKGADALAKILEKAG--YKVTTLHG- 549 (673)
T ss_pred eccCCCCccchh-eEEEEecchHHHHHHHHHHHhCC--------CCCEEEEEechhhHHHHHHHHhhcc--ceEEEeeC-
Confidence 333333222222 22345567889999999998853 4799999999999999999999999 99999999
Q ss_pred CCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 156 SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 156 ~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
+-+|++|..+|.+|+.|..+||||||+++||||||+|++|||||++++...|+||||||||+| .|.++.|++..+.+
T Consensus 550 --~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 550 --GKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred --CccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 999999999999999999999999999999999999999999999999999999999999998 78889998887654
No 4
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-32 Score=273.28 Aligned_cols=239 Identities=22% Similarity=0.317 Sum_probs=199.2
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
....+...|....+.+++.+..... ..+.|+||.+-|+++|++|+++|.+.| +++.++|+ ++..-+|.++++
T Consensus 419 lDP~ievRp~~~QvdDL~~EI~~r~---~~~eRvLVTtLTKkmAEdLT~Yl~e~g--ikv~YlHS---didTlER~eIir 490 (663)
T COG0556 419 LDPEIEVRPTKGQVDDLLSEIRKRV---AKNERVLVTTLTKKMAEDLTEYLKELG--IKVRYLHS---DIDTLERVEIIR 490 (663)
T ss_pred CCCceeeecCCCcHHHHHHHHHHHH---hcCCeEEEEeehHHHHHHHHHHHHhcC--ceEEeeec---cchHHHHHHHHH
Confidence 3333445566666666666654431 346999999999999999999999999 99999999 999999999999
Q ss_pred HHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC-----ChhhHhhhccccccccCceEEEEEeCCchhhHHHHHHHHh
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-----SPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTC 244 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-----s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~~~~ 244 (395)
++|.|.++|||+.|++.+|||+|+|++|.++|+.+ |..++||.+|||+|+-.|.++++ .+.++.+|+.+
T Consensus 491 dLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlY------AD~iT~sM~~A 564 (663)
T COG0556 491 DLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILY------ADKITDSMQKA 564 (663)
T ss_pred HHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEE------chhhhHHHHHH
Confidence 99999999999999999999999999999999876 89999999999999999999999 67788899999
Q ss_pred HHHHHHHHcccchhhhhcccCCCCCCCCcchhhhhhcccccccCCCCCCCCCCchhhHHhhhcchhhhccCCCCCccccc
Q psy4150 245 KSYVEKIINNKSIYANLAKNGPRMIPAHVTPRIKCLHIVVKDRVTPAKPSKKKPKENEKANKKSKKKLETDGNSEPAGKQ 324 (395)
Q Consensus 245 ~~~i~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (395)
..+.++....+.+||..|+..|..+.+.+...+........ .. ........++++++.+
T Consensus 565 i~ET~RRR~iQ~~yN~~hgItP~ti~K~i~d~l~~~~~~~~-~~---------~~~~~~~~~~~~~e~~----------- 623 (663)
T COG0556 565 IDETERRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDE-YK---------AKIEKKASKMSKKELE----------- 623 (663)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchhhhhhhhHhhhhhhhhhh-hh---------hhcccccccCCHHHHH-----------
Confidence 99999999999999999999999988887766554322100 00 0000113345666666
Q ss_pred ccchhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcCC
Q psy4150 325 NKTNAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSGE 368 (395)
Q Consensus 325 ~k~~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~~ 368 (395)
..|++|+++|.+||++|+ ||.||++||+|.+|++++.+.
T Consensus 624 ---~~I~~Le~~M~~aA~~l~--FE~Aa~lRD~i~~L~~~~~~~ 662 (663)
T COG0556 624 ---KLIKKLEKEMKEAAKNLE--FEEAARLRDEIKELKEELLGK 662 (663)
T ss_pred ---HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999 999999999999999988653
No 5
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.98 E-value=1e-31 Score=266.66 Aligned_cols=221 Identities=39% Similarity=0.572 Sum_probs=181.0
Q ss_pred cchhHHHHHHHhcchHHHHHHHHhCCCcchhhhccccCcccc-----ccccccCChhHHHHHHhhcccccccccceeeec
Q psy4150 21 LDRMIQRDFHVTHSLASALENLVTYGLRSFYNNLVEVSKEDG-----SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW 95 (395)
Q Consensus 21 ~~~~lead~~~~~~l~~~~~~L~~~g~r~~~~fsatl~~~~~-----~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 95 (395)
...-+..-+...+.+.+++++|.+||+++++.|+..+..... ..+.++.++.+...+..+... .....
T Consensus 273 ~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~-------~~~~v 345 (542)
T COG1111 273 DKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRA-------DESGV 345 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHh-------ccccC
Confidence 334456678888999999999999999999999986654331 246778888777665443211 22356
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCC-----CCCHHHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSS-----GVTQQEQKEIMKK 170 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~-----~~~~~~R~~~l~~ 170 (395)
.|||++.+.+++.+++.. +++.|+|||++.|++|+.+.++|.+.++..+ ..|.|+++ ||+|.++.+++++
T Consensus 346 ~HPKl~~l~eilke~~~k----~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~ 420 (542)
T COG1111 346 EHPKLEKLREILKEQLEK----NGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQ 420 (542)
T ss_pred CCccHHHHHHHHHHHHhc----CCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHH
Confidence 899999999999999876 6679999999999999999999999996555 57888543 8999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHHHHhHHHHHH
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEK 250 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~ 250 (395)
|+.|+++|||||+++++|||||+|++||+|++-+|+..+|||.|||||.+.|.+++|++.++-+..|...-.+..+.+.+
T Consensus 421 Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e 500 (542)
T COG1111 421 FRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIE 500 (542)
T ss_pred HhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccCCCCeEEEEEecCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986554444333244555555
Q ss_pred HHc
Q psy4150 251 IIN 253 (395)
Q Consensus 251 ~i~ 253 (395)
.+.
T Consensus 501 ~i~ 503 (542)
T COG1111 501 SIR 503 (542)
T ss_pred HHH
Confidence 443
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2.8e-32 Score=283.16 Aligned_cols=199 Identities=22% Similarity=0.328 Sum_probs=162.7
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeecccc--
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHL-- 98 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-- 98 (395)
+-|||.|++|||.+.++.+... ..+|+++||||++..+. ....++.+|..+.+-... .......+.|.|.....
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~-~~~~~~~i~q~~~~v~~~~ 258 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK-LERTLKKIKQFYLEVESEE 258 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc-ccccccCceEEEEEeCCHH
Confidence 3499999999999999998886 45999999999998663 445566666533322111 10122335566665442
Q ss_pred -HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 99 -KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 99 -K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
|+..|..++... ...++||||+|+..|+.|+..|...| +++..||| +|+|.+|.++++.|++|+++
T Consensus 259 ~k~~~L~~ll~~~--------~~~~~IVF~~tk~~~~~l~~~l~~~g--~~~~~lhG---~l~q~~R~~~l~~F~~g~~~ 325 (513)
T COG0513 259 EKLELLLKLLKDE--------DEGRVIVFVRTKRLVEELAESLRKRG--FKVAALHG---DLPQEERDRALEKFKDGELR 325 (513)
T ss_pred HHHHHHHHHHhcC--------CCCeEEEEeCcHHHHHHHHHHHHHCC--CeEEEecC---CCCHHHHHHHHHHHHcCCCC
Confidence 888887777653 34579999999999999999999999 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhH
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHN 236 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~ 236 (395)
||||||+++||||||+|++|||||+|.+++.|+||+|||||+| .|.++.|+++..+...
T Consensus 326 vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~ 385 (513)
T COG0513 326 VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKK 385 (513)
T ss_pred EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHH
Confidence 9999999999999999999999999999999999999999997 7888999887434433
No 7
>KOG0338|consensus
Probab=99.97 E-value=4.2e-32 Score=268.13 Aligned_cols=210 Identities=21% Similarity=0.277 Sum_probs=160.7
Q ss_pred hhHHhhcCCCCCCcccccch-hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHh
Q psy4150 4 KDKYVKSKAQFPHINRDLDR-MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQ 79 (395)
Q Consensus 4 ~~~~~~~~~~~~~i~~~~~~-~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~ 79 (395)
-|+-+++ |+-++-...-- +-|||.|++-||.+.++.|... .-||+++|||||+..+. .....+..|- .-.+..
T Consensus 314 IDHlrNs--~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPv-rifvd~ 390 (691)
T KOG0338|consen 314 IDHLRNS--PSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPV-RIFVDP 390 (691)
T ss_pred HHHhccC--CCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCe-EEEeCC
Confidence 3666666 44444444322 4599999999999998887764 67999999999998773 1111122221 000000
Q ss_pred hcccccccccceeeec-----cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 80 LKPKLDINIMSSEYAW-----SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 80 ~~~~~~~~~~~~~~~~-----~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.. . .-..+.|.|.- .+.+-..|..++...|. .++||||.|+..|..|.-+|.-.| +++.-+||
T Consensus 391 ~~-~-~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~--------~~~ivFv~tKk~AHRl~IllGLlg--l~agElHG 458 (691)
T KOG0338|consen 391 NK-D-TAPKLTQEFIRIRPKREGDREAMLASLITRTFQ--------DRTIVFVRTKKQAHRLRILLGLLG--LKAGELHG 458 (691)
T ss_pred cc-c-cchhhhHHHheeccccccccHHHHHHHHHHhcc--------cceEEEEehHHHHHHHHHHHHHhh--chhhhhcc
Confidence 00 0 00002333332 33455566667776664 699999999999999999999999 99999999
Q ss_pred cCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 155 QSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 155 ~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
.++|.+|.+.++.|+.++++|||||||++|||||++|.+||||++|.+...|+||+|||+|+| .|.++.|+.+.
T Consensus 459 ---sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~ 533 (691)
T KOG0338|consen 459 ---SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGES 533 (691)
T ss_pred ---cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccc
Confidence 999999999999999999999999999999999999999999999999999999999999996 89999998876
No 8
>KOG0342|consensus
Probab=99.96 E-value=2.7e-30 Score=254.95 Aligned_cols=207 Identities=19% Similarity=0.291 Sum_probs=167.9
Q ss_pred CCCCcccccchhH--HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccc-cccCChhHHHHHHhhcccccc
Q psy4150 13 QFPHINRDLDRMI--QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCP-ILGKDNDLQNLLQQLKPKLDI 86 (395)
Q Consensus 13 ~~~~i~~~~~~~l--ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~-~l~~~~~~~~~v~~~~~~~~~ 86 (395)
++..+-..++..+ |||..++|||.+.++.+... ..||+++||||.+..+. .++ .+..++.|+.++....... +
T Consensus 223 t~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~T-h 301 (543)
T KOG0342|consen 223 TSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERET-H 301 (543)
T ss_pred CCcchhhccceeEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcch-h
Confidence 3445555555533 99999999999998888775 57899999999998885 233 2334577777665444322 2
Q ss_pred cccceeeecc--ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHH
Q psy4150 87 NIMSSEYAWS--HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQ 164 (395)
Q Consensus 87 ~~~~~~~~~~--~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R 164 (395)
..+.|.|+.+ ..++-.|..+|.++.. ..++||||.|+..+..+++.|.... +.|..||| +++|..|
T Consensus 302 e~l~Qgyvv~~~~~~f~ll~~~LKk~~~-------~~KiiVF~sT~~~vk~~~~lL~~~d--lpv~eiHg---k~~Q~kR 369 (543)
T KOG0342|consen 302 ERLEQGYVVAPSDSRFSLLYTFLKKNIK-------RYKIIVFFSTCMSVKFHAELLNYID--LPVLEIHG---KQKQNKR 369 (543)
T ss_pred hcccceEEeccccchHHHHHHHHHHhcC-------CceEEEEechhhHHHHHHHHHhhcC--Cchhhhhc---CCccccc
Confidence 3355555543 3356677777777643 3899999999999999999999888 99999999 9999999
Q ss_pred HHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 165 KEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 165 ~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
..+..+|+..+.-|||||||++||+|+|+|++||+||+|.++.+||||+|||||.| .|.+++++.+++
T Consensus 370 T~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 370 TSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred chHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 99999999999999999999999999999999999999999999999999999996 788888877644
No 9
>KOG0326|consensus
Probab=99.96 E-value=5.8e-30 Score=240.93 Aligned_cols=207 Identities=20% Similarity=0.250 Sum_probs=174.7
Q ss_pred hhHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceee--eccc
Q psy4150 23 RMIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEY--AWSH 97 (395)
Q Consensus 23 ~~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~ 97 (395)
-+-|||.+++..|...++.|.+. .-+|.++||||+|-.+. .....+..|..+.+...+...- +.|.| +.++
T Consensus 232 V~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~G----vtQyYafV~e~ 307 (459)
T KOG0326|consen 232 VMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKG----VTQYYAFVEER 307 (459)
T ss_pred EechhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcc----hhhheeeechh
Confidence 35599999999999999998886 57899999999998773 3345666777777777665433 33444 4556
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|+..|..++..+.- .+.|||||+...+|.|+..+.+.| +.|.++|+ .|.|+.|..++.+|++|.++
T Consensus 308 qKvhCLntLfskLqI--------NQsIIFCNS~~rVELLAkKITelG--yscyyiHa---kM~Q~hRNrVFHdFr~G~cr 374 (459)
T KOG0326|consen 308 QKVHCLNTLFSKLQI--------NQSIIFCNSTNRVELLAKKITELG--YSCYYIHA---KMAQEHRNRVFHDFRNGKCR 374 (459)
T ss_pred hhhhhHHHHHHHhcc--------cceEEEeccchHhHHHHHHHHhcc--chhhHHHH---HHHHhhhhhhhhhhhccccc
Confidence 688888887776533 689999999999999999999999 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHHHccc
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~~~ 255 (395)
.|||||++.||||++.|++|||||+|++.++|+||+||.||.| -|-++.+++.++... ...|++.++..
T Consensus 375 nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~---------L~~IE~eLGtE 444 (459)
T KOG0326|consen 375 NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFN---------LYRIEQELGTE 444 (459)
T ss_pred eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhh---------HHHHHHHhccc
Confidence 9999999999999999999999999999999999999999998 688999988755433 34577777653
No 10
>KOG0343|consensus
Probab=99.96 E-value=7.3e-30 Score=254.26 Aligned_cols=206 Identities=20% Similarity=0.256 Sum_probs=175.4
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee--cccc
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA--WSHL 98 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~ 98 (395)
+-|||.+++|||...++-|.++ ..||+++||||-++.+. .++.-+.+|.|+.+..+..... ...+.|.|+ ....
T Consensus 221 LDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~at-P~~L~Q~y~~v~l~~ 299 (758)
T KOG0343|consen 221 LDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAAT-PSNLQQSYVIVPLED 299 (758)
T ss_pred eccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccC-hhhhhheEEEEehhh
Confidence 3399999999999999998886 67999999999988774 5666678888887653321111 112334443 4567
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|+..|...|..|.. .++|||+.|++.+..+++.+.+..|+++...||| .|+|..|.++..+|-....-|
T Consensus 300 Ki~~L~sFI~shlk--------~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G---~~~Q~~R~ev~~~F~~~~~~v 368 (758)
T KOG0343|consen 300 KIDMLWSFIKSHLK--------KKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHG---TMSQKKRIEVYKKFVRKRAVV 368 (758)
T ss_pred HHHHHHHHHHhccc--------cceEEEEehhhHHHHHHHHHHhcCCCCceeeecc---chhHHHHHHHHHHHHHhcceE
Confidence 99999999988764 7999999999999999999999999999999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHH
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~ 241 (395)
|+|||+++||||+|.|++||+||+|-++.+||||+||++|.. .|.+++++++.+++..+..+.
T Consensus 369 LF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq 432 (758)
T KOG0343|consen 369 LFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQ 432 (758)
T ss_pred EEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999995 899999999888666555444
No 11
>KOG0328|consensus
Probab=99.96 E-value=8.8e-30 Score=236.31 Aligned_cols=206 Identities=19% Similarity=0.282 Sum_probs=160.6
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeec---cc
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW---SH 97 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~ 97 (395)
+-|+|.|+.-||.+..--+-.+ +-.|..++|||+|+++. ....++.+| +.++...... ....+.+.|.. +.
T Consensus 175 LDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdp--vrilvkrdel-tlEgIKqf~v~ve~Ee 251 (400)
T KOG0328|consen 175 LDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDP--VRILVKRDEL-TLEGIKQFFVAVEKEE 251 (400)
T ss_pred eccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCc--eeEEEecCCC-chhhhhhheeeechhh
Confidence 3499999999999775444443 34788999999998873 445666666 2222221111 11123344442 34
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|++.|+++...+ .-.+++|||||+..+++|.+.|++.. +.+..+|| +|.+++|.+++.+|++|..+
T Consensus 252 wKfdtLcdLYd~L--------tItQavIFcnTk~kVdwLtekm~~~n--ftVssmHG---Dm~qkERd~im~dFRsg~Sr 318 (400)
T KOG0328|consen 252 WKFDTLCDLYDTL--------TITQAVIFCNTKRKVDWLTEKMREAN--FTVSSMHG---DMEQKERDKIMNDFRSGKSR 318 (400)
T ss_pred hhHhHHHHHhhhh--------ehheEEEEecccchhhHHHHHHHhhC--ceeeeccC---CcchhHHHHHHHHhhcCCce
Confidence 4888888877654 24799999999999999999999998 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHHHcc
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKIINN 254 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~~ 254 (395)
||+|||+.+||+|+|.|++|||||+|.+...||||+||.||.| .|.++.|+...+- +....|++.++.
T Consensus 319 vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~---------~~lrdieq~yst 387 (400)
T KOG0328|consen 319 VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDL---------RILRDIEQYYST 387 (400)
T ss_pred EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHH---------HHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999996 7888888765332 334566666654
No 12
>KOG0340|consensus
Probab=99.96 E-value=2.9e-29 Score=239.14 Aligned_cols=218 Identities=22% Similarity=0.268 Sum_probs=165.5
Q ss_pred cccchhH--HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccccccccccCChhHHHHHHhhcccccccccceeee
Q psy4150 19 RDLDRMI--QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDGSCPILGKDNDLQNLLQQLKPKLDINIMSSEYA 94 (395)
Q Consensus 19 ~~~~~~l--ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 94 (395)
..++.++ |||.++.-.|.+.++-+.+. .-||+++|+||++.........-....+-..+...........+.+.|.
T Consensus 152 ~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI 231 (442)
T KOG0340|consen 152 QRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYI 231 (442)
T ss_pred hceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhhee
Confidence 3344443 99999999999998888775 4479999999998766321111111001111111111111222344444
Q ss_pred --ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 --WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 --~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
..+.|-..|..+|...-. ...+.++|||||...|+.|+..|+..+ +++..+|| .|+|.+|...+..|+
T Consensus 232 ~~~~~vkdaYLv~~Lr~~~~-----~~~~simIFvnttr~cQ~l~~~l~~le--~r~~~lHs---~m~Q~eR~~aLsrFr 301 (442)
T KOG0340|consen 232 LVSIDVKDAYLVHLLRDFEN-----KENGSIMIFVNTTRECQLLSMTLKNLE--VRVVSLHS---QMPQKERLAALSRFR 301 (442)
T ss_pred ecchhhhHHHHHHHHhhhhh-----ccCceEEEEeehhHHHHHHHHHHhhhc--eeeeehhh---cchHHHHHHHHHHHh
Confidence 445577788888877533 256889999999999999999999999 99999999 999999999999999
Q ss_pred cCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHH
Q psy4150 173 AGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251 (395)
Q Consensus 173 ~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~ 251 (395)
++..+|||||||++||+|||.|++|||||.|.+|..||||+||++|+| .|.++.++++.+ . +....|++.
T Consensus 302 s~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rD-v--------~l~~aiE~~ 372 (442)
T KOG0340|consen 302 SNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRD-V--------ELLQAIEEE 372 (442)
T ss_pred hcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhh-H--------HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996 788888888433 3 234667777
Q ss_pred Hccc
Q psy4150 252 INNK 255 (395)
Q Consensus 252 i~~~ 255 (395)
++..
T Consensus 373 igkK 376 (442)
T KOG0340|consen 373 IGKK 376 (442)
T ss_pred Hhcc
Confidence 7764
No 13
>KOG0335|consensus
Probab=99.96 E-value=1.8e-29 Score=252.02 Aligned_cols=200 Identities=21% Similarity=0.228 Sum_probs=156.3
Q ss_pred hHHHHHHHh-cchHHHHHHHHhC------CCcchhhhccccCcccc-ccccccCC-hhHHHHHHhhcccccccccceeee
Q psy4150 24 MIQRDFHVT-HSLASALENLVTY------GLRSFYNNLVEVSKEDG-SCPILGKD-NDLQNLLQQLKPKLDINIMSSEYA 94 (395)
Q Consensus 24 ~lead~~~~-~~l~~~~~~L~~~------g~r~~~~fsatl~~~~~-~~~~l~~~-~~~~~~v~~~~~~~~~~~~~~~~~ 94 (395)
+-|||+|++ |||.+.++.|..+ +.+|+++||||+|.... ....++.+ ..++.+. .+............++
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~-rvg~~~~ni~q~i~~V 310 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVG-RVGSTSENITQKILFV 310 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEe-eeccccccceeEeeee
Confidence 349999999 9999999999886 47899999999998873 22222222 1111111 1111111111223345
Q ss_pred ccccHHHHHHHHHHHHHHh-hhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 95 WSHLKFIRLREILESHFRL-HAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~-~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
....|...|+++|...... +.......+++|||.|++.|..|+.+|...+ +++..+|| +.++.+|.+.++.|++
T Consensus 311 ~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~--~~~~sIhg---~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 311 NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG--YPAKSIHG---DRTQIEREQALNDFRN 385 (482)
T ss_pred cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC--CCceeecc---hhhhhHHHHHHHHhhc
Confidence 5567999999998875432 2222335589999999999999999999999 99999999 9999999999999999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEe
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLT 229 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~ 229 (395)
|.+.|||||+|++||||||+|.+|||||+|.+..+|+||||||||.| .|.++.|+.
T Consensus 386 g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 386 GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEec
Confidence 99999999999999999999999999999999999999999999998 566666665
No 14
>KOG0341|consensus
Probab=99.96 E-value=2.7e-29 Score=241.37 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=158.7
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccccccccccCChhHHHHHHh----hcccccccccceeeeccc
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDGSCPILGKDNDLQNLLQQ----LKPKLDINIMSSEYAWSH 97 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~~~~~l~~~~~~~~~v~~----~~~~~~~~~~~~~~~~~~ 97 (395)
+-|||.|++|||.+++..+.++ +.||+++||||||+.+ +.+..++-...+..+ ....+... ....|+...
T Consensus 332 lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KI---Q~FAkSALVKPvtvNVGRAGAAsldVi-QevEyVkqE 407 (610)
T KOG0341|consen 332 LDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKI---QNFAKSALVKPVTVNVGRAGAASLDVI-QEVEYVKQE 407 (610)
T ss_pred hhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHH---HHHHHhhcccceEEecccccccchhHH-HHHHHHHhh
Confidence 4599999999999999999887 8899999999999877 333333322222111 11111111 122344555
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|+-.|++-|.. ...++||||..+..++.+.+||--.| +.+..+|| +.+|++|...++.|+.|+-+
T Consensus 408 aKiVylLeCLQK---------T~PpVLIFaEkK~DVD~IhEYLLlKG--VEavaIHG---GKDQedR~~ai~afr~gkKD 473 (610)
T KOG0341|consen 408 AKIVYLLECLQK---------TSPPVLIFAEKKADVDDIHEYLLLKG--VEAVAIHG---GKDQEDRHYAIEAFRAGKKD 473 (610)
T ss_pred hhhhhHHHHhcc---------CCCceEEEeccccChHHHHHHHHHcc--ceeEEeec---CcchhHHHHHHHHHhcCCCc
Confidence 566655554422 35789999999999999999999999 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHH
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQT 239 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~ 239 (395)
|||||||++.|+|+|++.+|||||+|...+.|+||+|||||.| .|.+..|+....++..+..
T Consensus 474 VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlD 536 (610)
T KOG0341|consen 474 VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLD 536 (610)
T ss_pred eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999997 7888889988877765543
No 15
>KOG0345|consensus
Probab=99.95 E-value=3.4e-28 Score=238.85 Aligned_cols=196 Identities=20% Similarity=0.249 Sum_probs=159.8
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcc-cccccccceeeeccccH
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKP-KLDINIMSSEYAWSHLK 99 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~K 99 (395)
+-|||..++|||...++.|.++ ..|.+-+||||.+.++. ..+.-+.+|--+.+-..... .+..-.+.+..+....|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 4499999999999999998886 57899999999988774 33455556533332222110 01101122333445569
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
+..|.++|..+ ...++|||+.|+.++++.+..|...........+|| .|++..|..+++.|+...-.||
T Consensus 243 ~~~lv~~L~~~--------~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHG---K~~q~~R~k~~~~F~~~~~~vl 311 (567)
T KOG0345|consen 243 LSQLVHLLNNN--------KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHG---KMSQKARAKVLEAFRKLSNGVL 311 (567)
T ss_pred HHHHHHHHhcc--------ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecc---hhcchhHHHHHHHHHhccCceE
Confidence 99999988773 458999999999999999999988755688999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
+||||++||||||+|++||+||+|.++.+|+||+|||||+| .|.+++|+.+
T Consensus 312 ~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 312 FCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred EeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 99999999999999999999999999999999999999996 8999999887
No 16
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.95 E-value=4.3e-27 Score=249.43 Aligned_cols=225 Identities=20% Similarity=0.311 Sum_probs=170.1
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.+++.|.+.|..... .+.++||||+|+..++.|+++|.+.| +.+.++|| ++++.+|.++++.|+.|++.
T Consensus 426 ~qi~~Ll~eI~~~~~------~g~~vLIf~~tk~~ae~L~~~L~~~g--i~~~~lh~---~~~~~eR~~~l~~fr~G~i~ 494 (655)
T TIGR00631 426 GQVDDLLSEIRQRVA------RNERVLVTTLTKKMAEDLTDYLKELG--IKVRYLHS---EIDTLERVEIIRDLRLGEFD 494 (655)
T ss_pred chHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHHhhhc--cceeeeeC---CCCHHHHHHHHHHHhcCCce
Confidence 356666666655433 36899999999999999999999998 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcC-----CCCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHHHHhHHHHHHHH
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFD-----AQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d-----~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i 252 (395)
|||||+++++|+|+|++++||++| .|.+..+|+||+|||||...|.+++|+...+.... .+........
T Consensus 495 VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~------~ai~~~~~~~ 568 (655)
T TIGR00631 495 VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQ------KAIEETERRR 568 (655)
T ss_pred EEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHH------HHHHHHHhHH
Confidence 999999999999999999999999 79999999999999999999999888776554322 3334443444
Q ss_pred cccchhhhhcccCCCCCCCCcchhhhhhcccccccCCCCCCCCCCchhhHHhhhcchhhhccCCCCCcccccccchhhhh
Q psy4150 253 NNKSIYANLAKNGPRMIPAHVTPRIKCLHIVVKDRVTPAKPSKKKPKENEKANKKSKKKLETDGNSEPAGKQNKTNAKKT 332 (395)
Q Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 332 (395)
..+..++..+...|..+.+.+...+........ . ..... ... ....+++++++. +.+++
T Consensus 569 ~iq~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~-~~~~~---~~~-~~~~~~~~~~~~--------------~~i~~ 627 (655)
T TIGR00631 569 KIQMAYNEEHGITPQTIRKPIRDILDIELKEKE--D-AAKKK---KKG-EDLSDLSKKELK--------------KLIKQ 627 (655)
T ss_pred HHHhhhhhhcCCCCcccCcchHHHhhhhhhccc--c-hhhcc---ccc-cccccCCHHHHH--------------HHHHH
Confidence 444566677777888877766654432111100 0 00000 000 000112334444 79999
Q ss_pred hccchhhhhHHHHHHHHhhhhchhhHHHHH
Q psy4150 333 KKQPMMTQSNDIRTCFENITKKKKTFIDFL 362 (395)
Q Consensus 333 ~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~ 362 (395)
|+++|.+||++|+ ||.||.+||+|..|+
T Consensus 628 l~~~M~~aa~~l~--FE~Aa~~RD~i~~L~ 655 (655)
T TIGR00631 628 LEKEMKQAARNLE--FEEAARLRDEILELK 655 (655)
T ss_pred HHHHHHHHHHccC--HHHHHHHHHHHHhcC
Confidence 9999999999999 999999999999875
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1e-27 Score=243.98 Aligned_cols=191 Identities=21% Similarity=0.267 Sum_probs=147.5
Q ss_pred HHHHHHHhcchHHHHHHHHhC----CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccce--eeeccc
Q psy4150 25 IQRDFHVTHSLASALENLVTY----GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSS--EYAWSH 97 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~----g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~ 97 (395)
.|+|.+++++|...+..+... ..++.+.||||++.... .+...+.++.++.+..... ....+.+ .+....
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~---~~~~i~~~~~~~~~~ 240 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK---TGHRIKEELFYPSNE 240 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc---CCCceeEEEEeCCHH
Confidence 399999999998887776653 23567899999987552 2223334443322111100 0011122 223345
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|...|..++.. ....++||||+++..|+.+++.|...| +.+.++|| +|++.+|..++++|+.|+++
T Consensus 241 ~k~~~l~~ll~~--------~~~~~~lVF~~t~~~~~~l~~~L~~~g--~~v~~lhg---~~~~~~R~~~l~~F~~g~~~ 307 (423)
T PRK04837 241 EKMRLLQTLIEE--------EWPDRAIIFANTKHRCEEIWGHLAADG--HRVGLLTG---DVAQKKRLRILEEFTRGDLD 307 (423)
T ss_pred HHHHHHHHHHHh--------cCCCeEEEEECCHHHHHHHHHHHHhCC--CcEEEecC---CCChhHHHHHHHHHHcCCCc
Confidence 577777666654 235799999999999999999999988 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
||||||+++||||+|+|++||+||+|.+..+|+||+|||||.| .|.+++|+++.
T Consensus 308 vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~ 362 (423)
T PRK04837 308 ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEE 362 (423)
T ss_pred EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHH
Confidence 9999999999999999999999999999999999999999997 78888887653
No 18
>KOG0336|consensus
Probab=99.95 E-value=4e-28 Score=234.71 Aligned_cols=195 Identities=18% Similarity=0.252 Sum_probs=154.4
Q ss_pred HHHHHHHhcchHHHHHHHHh--CCCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeec--cccH
Q psy4150 25 IQRDFHVTHSLASALENLVT--YGLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW--SHLK 99 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~--~g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~K 99 (395)
-|||.|++|||..++..++- .+.||+.+-|||.|..++ ....++.+|-.+ .+..+. ....+.+.|.+.. ...|
T Consensus 374 DEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v-~vGsLd-L~a~~sVkQ~i~v~~d~~k 451 (629)
T KOG0336|consen 374 DEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIV-YVGSLD-LVAVKSVKQNIIVTTDSEK 451 (629)
T ss_pred cchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEE-Eecccc-eeeeeeeeeeEEecccHHH
Confidence 49999999999998776433 488999999999999885 334455555221 122221 1122223344433 3446
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
+.....++..+ ....++||||..+..|+.|..-|.-.| +.+..||| +-.|.+|+..+++|++|+++||
T Consensus 452 ~~~~~~f~~~m-------s~ndKvIiFv~~K~~AD~LSSd~~l~g--i~~q~lHG---~r~Q~DrE~al~~~ksG~vrIL 519 (629)
T KOG0336|consen 452 LEIVQFFVANM-------SSNDKVIIFVSRKVMADHLSSDFCLKG--ISSQSLHG---NREQSDREMALEDFKSGEVRIL 519 (629)
T ss_pred HHHHHHHHHhc-------CCCceEEEEEechhhhhhccchhhhcc--cchhhccC---ChhhhhHHHHHHhhhcCceEEE
Confidence 65555555443 446899999999999999999988888 99999999 8999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
||||+++||||++++.+|+|||+|.+.+.|+||+||+||+| .|..+.|++..+-
T Consensus 520 vaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 520 VATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDW 574 (629)
T ss_pred EEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhH
Confidence 99999999999999999999999999999999999999996 8889988887543
No 19
>PTZ00110 helicase; Provisional
Probab=99.94 E-value=3.9e-27 Score=246.61 Aligned_cols=194 Identities=24% Similarity=0.287 Sum_probs=151.1
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCC-hhHHHHHHhhccccccccccee--eeccccH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKD-NDLQNLLQQLKPKLDINIMSSE--YAWSHLK 99 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~-~~~~~~v~~~~~~~~~~~~~~~--~~~~~~K 99 (395)
|+|.+++++|...+..|... ..+|++.||||++..+. ....++.. +..+.+ ...... ....+.+. +.....|
T Consensus 285 EAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~v-g~~~l~-~~~~i~q~~~~~~~~~k 362 (545)
T PTZ00110 285 EADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNV-GSLDLT-ACHNIKQEVFVVEEHEK 362 (545)
T ss_pred hHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEE-CCCccc-cCCCeeEEEEEEechhH
Confidence 99999999999888877764 56789999999987652 11222211 111000 000000 00111222 2334568
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...|..+|..... .+.++||||+|+..|+.|+..|...+ +.+..+|| ++++.+|..++++|++|+++||
T Consensus 363 ~~~L~~ll~~~~~------~~~k~LIF~~t~~~a~~l~~~L~~~g--~~~~~ihg---~~~~~eR~~il~~F~~G~~~IL 431 (545)
T PTZ00110 363 RGKLKMLLQRIMR------DGDKILIFVETKKGADFLTKELRLDG--WPALCIHG---DKKQEERTWVLNEFKTGKSPIM 431 (545)
T ss_pred HHHHHHHHHHhcc------cCCeEEEEecChHHHHHHHHHHHHcC--CcEEEEEC---CCcHHHHHHHHHHHhcCCCcEE
Confidence 8888888876542 35899999999999999999999888 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
|||++++||||||+|++||+||+|.+..+|+||+|||||.| .|.+++|+++.+
T Consensus 432 VaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 432 IATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred EEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcch
Confidence 99999999999999999999999999999999999999996 788888887643
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=3.3e-27 Score=242.80 Aligned_cols=189 Identities=20% Similarity=0.328 Sum_probs=149.6
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeec--cccHH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW--SHLKF 100 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~K~ 100 (395)
|+|.+++++|...+..+... ..++++.||||++.... ....++.++..+.+.... ....+.+.|.. ...|+
T Consensus 155 Ead~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~----~~~~i~~~~~~~~~~~k~ 230 (460)
T PRK11776 155 EADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH----DLPAIEQRFYEVSPDERL 230 (460)
T ss_pred CHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC----CCCCeeEEEEEeCcHHHH
Confidence 99999999999888777665 45789999999987653 223334444322211110 11112333332 33477
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..|..+|..+ ...++||||+|+..++.+++.|...+ +.+..+|| +|++.+|..+++.|++|+++|||
T Consensus 231 ~~l~~ll~~~--------~~~~~lVF~~t~~~~~~l~~~L~~~~--~~v~~~hg---~~~~~eR~~~l~~F~~g~~~vLV 297 (460)
T PRK11776 231 PALQRLLLHH--------QPESCVVFCNTKKECQEVADALNAQG--FSALALHG---DLEQRDRDQVLVRFANRSCSVLV 297 (460)
T ss_pred HHHHHHHHhc--------CCCceEEEECCHHHHHHHHHHHHhCC--CcEEEEeC---CCCHHHHHHHHHHHHcCCCcEEE
Confidence 7777776542 35789999999999999999999998 99999999 99999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 181 aT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
||+++++|||+|+|++||+||+|.++.+|+||+|||||.| .|.+++++.+.
T Consensus 298 aTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~ 349 (460)
T PRK11776 298 ATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPE 349 (460)
T ss_pred EecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchh
Confidence 9999999999999999999999999999999999999997 67788777654
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=1.1e-26 Score=237.01 Aligned_cols=189 Identities=23% Similarity=0.310 Sum_probs=143.1
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcc-c-cccccccCChhHHHHHHhhcccccccccceeeecc---cc
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKE-D-GSCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWS---HL 98 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~-~-~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~ 98 (395)
|+|.+++++|...+..+... ..++.+.||||++.. . ..+..++.++..+..... ......+.+.+... ..
T Consensus 155 Eah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~i~~~~~~~~~~~~ 231 (434)
T PRK11192 155 EADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS---RRERKKIHQWYYRADDLEH 231 (434)
T ss_pred CHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC---cccccCceEEEEEeCCHHH
Confidence 89999999999988887653 446889999999743 2 122233333321111100 00011122222222 23
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|...|..++.. ....++||||+++..++.|+..|...+ +.+..+|| +|++.+|..+++.|++|+++|
T Consensus 232 k~~~l~~l~~~--------~~~~~~lVF~~s~~~~~~l~~~L~~~~--~~~~~l~g---~~~~~~R~~~l~~f~~G~~~v 298 (434)
T PRK11192 232 KTALLCHLLKQ--------PEVTRSIVFVRTRERVHELAGWLRKAG--INCCYLEG---EMVQAKRNEAIKRLTDGRVNV 298 (434)
T ss_pred HHHHHHHHHhc--------CCCCeEEEEeCChHHHHHHHHHHHhCC--CCEEEecC---CCCHHHHHHHHHHHhCCCCcE
Confidence 55555554432 346899999999999999999999988 99999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
||||+++++|||+|+|++||+||+|.+...|+||+|||||.| .|.+++++..
T Consensus 299 LVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~ 351 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEA 351 (434)
T ss_pred EEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecH
Confidence 999999999999999999999999999999999999999996 6777777754
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=9.7e-27 Score=239.09 Aligned_cols=205 Identities=17% Similarity=0.273 Sum_probs=151.1
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeecc--ccHH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWS--HLKF 100 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~K~ 100 (395)
|+|.+++++|.+.+..+... ..+|.+.||||++.... .+..++.++..+.+.... .....+.+.+... ..|.
T Consensus 157 Eah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~---~~~~~i~~~~~~~~~~~k~ 233 (456)
T PRK10590 157 EADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN---TASEQVTQHVHFVDKKRKR 233 (456)
T ss_pred cHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc---ccccceeEEEEEcCHHHHH
Confidence 99999999998887776654 45688999999987652 223334333222111100 0011122232222 2333
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..|..++ .. ....++||||+++..++.|++.|...+ +.+..+|| +|++.+|..++++|++|+++|||
T Consensus 234 ~~l~~l~----~~----~~~~~~lVF~~t~~~~~~l~~~L~~~g--~~~~~lhg---~~~~~~R~~~l~~F~~g~~~iLV 300 (456)
T PRK10590 234 ELLSQMI----GK----GNWQQVLVFTRTKHGANHLAEQLNKDG--IRSAAIHG---NKSQGARTRALADFKSGDIRVLV 300 (456)
T ss_pred HHHHHHH----Hc----CCCCcEEEEcCcHHHHHHHHHHHHHCC--CCEEEEEC---CCCHHHHHHHHHHHHcCCCcEEE
Confidence 3333333 22 345799999999999999999999988 99999999 99999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHHHccc
Q psy4150 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255 (395)
Q Consensus 181 aT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~~~ 255 (395)
||+++++|||+|+|++||+||+|.++.+|+||+|||||.| .|.++++++..+ . .....+++.++..
T Consensus 301 aTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d-~--------~~~~~ie~~l~~~ 367 (456)
T PRK10590 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE-H--------KLLRDIEKLLKKE 367 (456)
T ss_pred EccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHH-H--------HHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999996 688887776532 2 2235566666543
No 23
>KOG0332|consensus
Probab=99.94 E-value=9e-27 Score=223.32 Aligned_cols=188 Identities=19% Similarity=0.311 Sum_probs=145.9
Q ss_pred hcchHHHHHHHHhCCCcchhhhcc-ccCccccccccccCChhHHHHHHhhcccccccc--------------cceeeec-
Q psy4150 32 THSLASALENLVTYGLRSFYNNLV-EVSKEDGSCPILGKDNDLQNLLQQLKPKLDINI--------------MSSEYAW- 95 (395)
Q Consensus 32 ~~~l~~~~~~L~~~g~r~~~~fsa-tl~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~--------------~~~~~~~- 95 (395)
.+.|+++..+|-.+|++....-+. .+|+ .++.++++++|.+-+..+...+..+. +.+.|..
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~---~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C 311 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPR---NQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLC 311 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCC---cceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeec
Confidence 356677777777776654432222 2232 33666677777766665554443332 4444443
Q ss_pred --cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 96 --SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 96 --~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
...|++.|.+|... ..-++.||||.|+.+|.+|+..|...| ..+..+|| +|+..+|..++..||.
T Consensus 312 ~~~~~K~~~l~~lyg~--------~tigqsiIFc~tk~ta~~l~~~m~~~G--h~V~~l~G---~l~~~~R~~ii~~Fr~ 378 (477)
T KOG0332|consen 312 ACRDDKYQALVNLYGL--------LTIGQSIIFCHTKATAMWLYEEMRAEG--HQVSLLHG---DLTVEQRAAIIDRFRE 378 (477)
T ss_pred cchhhHHHHHHHHHhh--------hhhhheEEEEeehhhHHHHHHHHHhcC--ceeEEeec---cchhHHHHHHHHHHhc
Confidence 35688888885433 234899999999999999999999999 99999999 9999999999999999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcCCCC------ChhhHhhhcccccccc-CceEEEEEeCCchhh
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQK------SPIKMVQRLGRTGRKR-NGRCVILLTQGREAH 235 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~------s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~ 235 (395)
|..+|||+|+|++||||++.|++|||||+|. ++..|+||+|||||.| .|.++.++.......
T Consensus 379 g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 379 GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMN 447 (477)
T ss_pred CcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHH
Confidence 9999999999999999999999999999996 7899999999999997 788888777655543
No 24
>KOG0354|consensus
Probab=99.94 E-value=4.5e-26 Score=237.70 Aligned_cols=205 Identities=39% Similarity=0.560 Sum_probs=159.6
Q ss_pred HHHhcchHHHHHHHHhCCCc--chhhhccccCccccccc--cccCChhHHHHHHhhcccccccccceeeeccccHHHHHH
Q psy4150 29 FHVTHSLASALENLVTYGLR--SFYNNLVEVSKEDGSCP--ILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHLKFIRLR 104 (395)
Q Consensus 29 ~~~~~~l~~~~~~L~~~g~r--~~~~fsatl~~~~~~~~--~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~K~~~L~ 104 (395)
|..+..+.+.+.+|..+|+| ..+.+..++..+....+ .+..+..+.......-..+.. +...-...+||++.|.
T Consensus 324 f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~--l~~~~~~~npkle~l~ 401 (746)
T KOG0354|consen 324 FYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEH--LSLDPPKENPKLEKLV 401 (746)
T ss_pred HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhh--hhcCCCccChhHHHHH
Confidence 77777778889999999999 55555556655443222 222222222222211111111 1111136799999999
Q ss_pred HHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHc-ccCCCCceeEEeccCC-----CCCHHHHHHHHHHHhcCCccE
Q psy4150 105 EILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK-PLEPMVKASMFVGQSS-----GVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 105 ~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~-~~~~~~~~~~lhg~~~-----~~~~~~R~~~l~~Fk~g~~~v 178 (395)
++|.+++.. .+..|+||||.||.+|+.|..+|. -+.+.+++..+.|++. +|+|.++.+++++|++|+++|
T Consensus 402 ~~l~e~f~~----~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~Nv 477 (746)
T KOG0354|consen 402 EILVEQFEQ----NPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINV 477 (746)
T ss_pred HHHHHHhhc----CCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccE
Confidence 999999885 778999999999999999999998 4455589999999664 899999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHH
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~ 241 (395)
||||+|+++||||++|++||+||+..|+..+|||+|| ||+.+|.++++++ +.+...+....
T Consensus 478 LVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~ns~~vll~t-~~~~~~~E~~~ 538 (746)
T KOG0354|consen 478 LVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRARNSKCVLLTT-GSEVIEFERNN 538 (746)
T ss_pred EEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccccCCeEEEEEc-chhHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999988 66665555544
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=1.5e-26 Score=245.18 Aligned_cols=190 Identities=21% Similarity=0.309 Sum_probs=151.7
Q ss_pred HHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee--ccccH
Q psy4150 25 IQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA--WSHLK 99 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~K 99 (395)
-|+|.++.++|.+.++.+... ..+++++||||+|..+. ....++.++..+.+..... ....+.+.|. ....|
T Consensus 156 DEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~---~~~~i~q~~~~v~~~~k 232 (629)
T PRK11634 156 DEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT---TRPDISQSYWTVWGMRK 232 (629)
T ss_pred ccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc---cCCceEEEEEEechhhH
Confidence 399999999999888877664 45789999999998763 2334444543332221111 1111233333 33457
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...|..+|.. ....++||||+|+..++.|++.|...+ +.+..+|| +|++.+|..+++.|++|+++||
T Consensus 233 ~~~L~~~L~~--------~~~~~~IVF~~tk~~a~~l~~~L~~~g--~~~~~lhg---d~~q~~R~~il~~Fr~G~~~IL 299 (629)
T PRK11634 233 NEALVRFLEA--------EDFDAAIIFVRTKNATLEVAEALERNG--YNSAALNG---DMNQALREQTLERLKDGRLDIL 299 (629)
T ss_pred HHHHHHHHHh--------cCCCCEEEEeccHHHHHHHHHHHHhCC--CCEEEeeC---CCCHHHHHHHHHHHhCCCCCEE
Confidence 7877777754 234789999999999999999999998 99999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
|||+++++|||+|+|++||+||+|.++.+|+||+|||||+| .|.+++|+.+
T Consensus 300 VATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~ 351 (629)
T PRK11634 300 IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 (629)
T ss_pred EEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEech
Confidence 99999999999999999999999999999999999999997 5888877764
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2e-26 Score=242.24 Aligned_cols=190 Identities=18% Similarity=0.250 Sum_probs=145.6
Q ss_pred HHHHHHHhcchHHHHHHHHhC----CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee--ccc
Q psy4150 25 IQRDFHVTHSLASALENLVTY----GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA--WSH 97 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~----g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~ 97 (395)
.|+|.+++++|...+..|... ..+++++||||++..+. .....+.++....+. .. ......+.+.+. ...
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~--~~-~~~~~~i~q~~~~~~~~ 242 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVE--TE-TITAARVRQRIYFPADE 242 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEec--cc-cccccceeEEEEecCHH
Confidence 499999999999888777664 25789999999987652 222222222111000 00 001111222222 234
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|+..|..++.. ..+.++||||+|+..|+.|++.|...+ +.+..+|| +|++.+|..+++.|++|+++
T Consensus 243 ~k~~~L~~ll~~--------~~~~k~LVF~nt~~~ae~l~~~L~~~g--~~v~~lhg---~l~~~eR~~il~~Fr~G~~~ 309 (572)
T PRK04537 243 EKQTLLLGLLSR--------SEGARTMVFVNTKAFVERVARTLERHG--YRVGVLSG---DVPQKKRESLLNRFQKGQLE 309 (572)
T ss_pred HHHHHHHHHHhc--------ccCCcEEEEeCCHHHHHHHHHHHHHcC--CCEEEEeC---CCCHHHHHHHHHHHHcCCCe
Confidence 466666555543 346799999999999999999999998 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
||||||++++|||+|+|++|||||+|.+..+|+||+|||||.| .|.+++|+++
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~ 363 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACE 363 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecH
Confidence 9999999999999999999999999999999999999999997 7888888765
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=2.8e-26 Score=239.03 Aligned_cols=193 Identities=20% Similarity=0.263 Sum_probs=146.9
Q ss_pred HHHHHHHhcchHHHHHHHHh-CCCcchhhhccccCcccc-ccccccCChhHHHHHHhhccccccccccee--eeccccHH
Q psy4150 25 IQRDFHVTHSLASALENLVT-YGLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSE--YAWSHLKF 100 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~-~g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~K~ 100 (395)
-|+|.++++||...+..+.. .+..|++.||||++..+. ....++.++.++.+-.... ....+.+. ++....|.
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~---~~~~v~q~~~~~~~~~k~ 353 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR---PNKAVKQLAIWVETKQKK 353 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC---CCcceeEEEEeccchhHH
Confidence 39999999999887665544 366799999999987653 2222333322111111000 00111122 33345577
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcc-cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKP-LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~-~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
..|.++|..... ...++||||+++..++.|++.|.. .+ +.+..+|| ++++.+|..+++.|++|+++||
T Consensus 354 ~~l~~~l~~~~~------~~~~~iVFv~s~~~a~~l~~~L~~~~g--~~~~~~Hg---~~~~~eR~~il~~Fr~G~~~IL 422 (518)
T PLN00206 354 QKLFDILKSKQH------FKPPAVVFVSSRLGADLLANAITVVTG--LKALSIHG---EKSMKERREVMKSFLVGEVPVI 422 (518)
T ss_pred HHHHHHHHhhcc------cCCCEEEEcCCchhHHHHHHHHhhccC--cceEEeeC---CCCHHHHHHHHHHHHCCCCCEE
Confidence 778777765321 246899999999999999999975 46 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|||++++||||+|+|++||+||+|.+..+|+||+|||||.| .|.+++|++..
T Consensus 423 VaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 423 VATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475 (518)
T ss_pred EEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchh
Confidence 99999999999999999999999999999999999999997 67888877653
No 28
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.93 E-value=1.7e-25 Score=238.18 Aligned_cols=215 Identities=21% Similarity=0.341 Sum_probs=160.3
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.++..|.+.|..... .+.++||||+|+..++.|++.|.+.| +++.++|| ++++.+|..++..|+.|.+.
T Consensus 430 ~q~~~L~~~L~~~~~------~g~~viIf~~t~~~ae~L~~~L~~~g--i~~~~~h~---~~~~~~R~~~l~~f~~g~i~ 498 (652)
T PRK05298 430 GQVDDLLSEIRKRVA------KGERVLVTTLTKRMAEDLTDYLKELG--IKVRYLHS---DIDTLERVEIIRDLRLGEFD 498 (652)
T ss_pred ccHHHHHHHHHHHHh------CCCEEEEEeCCHHHHHHHHHHHhhcc--eeEEEEEC---CCCHHHHHHHHHHHHcCCce
Confidence 356666666655443 36899999999999999999999999 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCC-----CCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHHHHhHHHHHHHH
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDA-----QKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~-----p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i 252 (395)
|||||+++++|+|+|++++||++|. |.+..+|+||+|||||...|.+++|++..+....-........+.++..+
T Consensus 499 vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~ 578 (652)
T PRK05298 499 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRREIQIAY 578 (652)
T ss_pred EEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999986 78999999999999999889999888754432221111112233343333
Q ss_pred cccchhhhhcccCCCCCCCCcchhhhhhcccccccCCCCCCCCCCchhhHHhhhcchhhhccCCCCCcccccccchhhhh
Q psy4150 253 NNKSIYANLAKNGPRMIPAHVTPRIKCLHIVVKDRVTPAKPSKKKPKENEKANKKSKKKLETDGNSEPAGKQNKTNAKKT 332 (395)
Q Consensus 253 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 332 (395)
+ ..+...|..+.+.+...+... . . ...+..+..+ +.++.
T Consensus 579 ~------~~~~~~~~~~~~~~~~~~~~~-------~---~-----------~~~~~~~~~~--------------~~~~~ 617 (652)
T PRK05298 579 N------EEHGITPKTIKKKIRDILDSV-------Y---K-----------KDKLSKKELE--------------KLIKE 617 (652)
T ss_pred h------hccCCCChhHHHHHHHHHHhh-------h---h-----------hccCCHHHHH--------------HHHHH
Confidence 2 333333433333333322100 0 0 0012222333 68899
Q ss_pred hccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 333 KKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 333 ~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
++++|..||++|+ ||.||.+||+|..|+..+.
T Consensus 618 l~~~M~~aa~~l~--fE~Aa~~Rd~i~~l~~~~~ 649 (652)
T PRK05298 618 LEKQMKEAAKNLE--FEEAARLRDEIKELKEELL 649 (652)
T ss_pred HHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 9999999999999998654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.5e-25 Score=231.43 Aligned_cols=205 Identities=20% Similarity=0.292 Sum_probs=151.7
Q ss_pred HHHHHHhcchHHHHHHHHhC----CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceee--ecccc
Q psy4150 26 QRDFHVTHSLASALENLVTY----GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEY--AWSHL 98 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~----g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~ 98 (395)
|+|.++.++|...+..|..+ +.++++.+|||++.... ....++.++....+... . .....+.+.+ .....
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~--~-~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPE--N-VASDTVEQHVYAVAGSD 321 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccC--c-CCCCcccEEEEEecchh
Confidence 89999999988777666553 34689999999876542 22222233322111100 0 0000111121 23445
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|...|..++.. ....++||||+++..++.+++.|...+ +.+..+|| ++++.+|.++++.|++|+++|
T Consensus 322 k~~~l~~ll~~--------~~~~~~IVF~~s~~~~~~l~~~L~~~~--~~~~~~~g---~~~~~~R~~~~~~Fr~G~~~v 388 (475)
T PRK01297 322 KYKLLYNLVTQ--------NPWERVMVFANRKDEVRRIEERLVKDG--INAAQLSG---DVPQHKRIKTLEGFREGKIRV 388 (475)
T ss_pred HHHHHHHHHHh--------cCCCeEEEEeCCHHHHHHHHHHHHHcC--CCEEEEEC---CCCHHHHHHHHHHHhCCCCcE
Confidence 66666666543 345799999999999999999999888 89999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHHHccc
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~~~ 255 (395)
||||+++++|||||+|++||+||+|.+..+|+||+||+||.| .|.+++|+.+. +. .....+++.++..
T Consensus 389 LvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~--------~~~~~~~~~~~~~ 457 (475)
T PRK01297 389 LVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED-DA--------FQLPEIEELLGRK 457 (475)
T ss_pred EEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH-HH--------HHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999997 67777777643 21 2245677777654
No 30
>KOG0348|consensus
Probab=99.92 E-value=3.8e-25 Score=220.10 Aligned_cols=203 Identities=18% Similarity=0.247 Sum_probs=155.7
Q ss_pred HHHHHHHhcchHHHHHHHHhC---------C------CcchhhhccccCcccc-ccccccCChhHHHH------------
Q psy4150 25 IQRDFHVTHSLASALENLVTY---------G------LRSFYNNLVEVSKEDG-SCPILGKDNDLQNL------------ 76 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~---------g------~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~------------ 76 (395)
.|+|..++|||...+..|... . .+|.++.|||++..+. ....-+.||.++.+
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 399999999999887776652 1 3788999999987763 22223334433330
Q ss_pred -HHhh-cc--------cccccccceeeeccccHHHH--HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC
Q psy4150 77 -LQQL-KP--------KLDINIMSSEYAWSHLKFIR--LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE 144 (395)
Q Consensus 77 -v~~~-~~--------~~~~~~~~~~~~~~~~K~~~--L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~ 144 (395)
+... .. ......+.+.|...+||+.. |..+|.+++.. ....++|||+.|++.++.-++.|....
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~----~~~qk~iVF~S~~d~VeFHy~lf~~~l 449 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKF----EEKQKMIVFFSCSDSVEFHYSLFSEAL 449 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhh----hhhceeEEEEechhHHHHHHHHHHhhh
Confidence 0000 00 11112266778888887765 56777777665 445699999999999999888875421
Q ss_pred ----------C----------CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC
Q psy4150 145 ----------P----------MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK 204 (395)
Q Consensus 145 ----------~----------~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~ 204 (395)
| ..+...||| +|+|++|..+++.|+...-.||+||||++||||+|+|.+||.||+|.
T Consensus 450 ~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG---sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~ 526 (708)
T KOG0348|consen 450 LSHLEGSSGAPDSEGLPPLFMDLKFYRLHG---SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPF 526 (708)
T ss_pred hcccccccCCcccCCChhhhhcceEEEecC---chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCC
Confidence 0 357788999 99999999999999999888999999999999999999999999999
Q ss_pred ChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 205 SPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 205 s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
++.+|+||+|||+|+| .|.+++|+.+.+.+
T Consensus 527 s~adylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 527 STADYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred CHHHHHHHhhhhhhccCCCceEEEecccHHH
Confidence 9999999999999998 78888888776654
No 31
>KOG0339|consensus
Probab=99.92 E-value=1.1e-25 Score=222.62 Aligned_cols=196 Identities=23% Similarity=0.244 Sum_probs=160.8
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHh-hc-ccccccccceeeecccc
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQ-LK-PKLDINIMSSEYAWSHL 98 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~-~~-~~~~~~~~~~~~~~~~~ 98 (395)
+-|+|.|.+|||..++.-|..| +.||+++|++|++..+. ..+.++.+| +.+++. +. .--.+.+.+..+.....
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dp--VrvVqg~vgean~dITQ~V~V~~s~~~ 453 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDP--VRVVQGEVGEANEDITQTVSVCPSEEK 453 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCC--eeEEEeehhccccchhheeeeccCcHH
Confidence 3499999999999999999998 78999999999987663 455666666 222211 11 10111112233334556
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|+.+|..-|..... .+++||||..+..++.+...|.-.+ +.+..+|| +|+|.+|.++|.+|+.+...|
T Consensus 454 Kl~wl~~~L~~f~S-------~gkvlifVTKk~~~e~i~a~Lklk~--~~v~llhg---dkdqa~rn~~ls~fKkk~~~V 521 (731)
T KOG0339|consen 454 KLNWLLRHLVEFSS-------EGKVLIFVTKKADAEEIAANLKLKG--FNVSLLHG---DKDQAERNEVLSKFKKKRKPV 521 (731)
T ss_pred HHHHHHHHhhhhcc-------CCcEEEEEeccCCHHHHHHHhcccc--ceeeeecC---chhhHHHHHHHHHHhhcCCce
Confidence 88888776666533 4899999999999999999999999 99999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
||+||+++||+||+++..|||||+-.+...|.||+||+||+| .|.++.|+++-+.
T Consensus 522 lvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 522 LVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred EEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhH
Confidence 999999999999999999999999999999999999999997 7889999987443
No 32
>KOG0327|consensus
Probab=99.91 E-value=2.2e-24 Score=208.15 Aligned_cols=202 Identities=19% Similarity=0.272 Sum_probs=162.1
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee--ccccHH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA--WSHLKF 100 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~K~ 100 (395)
|+|.|++.||.+.+..|..+ ...|..+||||+|.++. ..+.++.+|-.+.+-.+. +....+.+.|. ...+|+
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~---ltl~gikq~~i~v~k~~k~ 253 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE---LTLEGIKQFYINVEKEEKL 253 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh---hhhhheeeeeeeccccccc
Confidence 89999999999998888886 45699999999998873 345556555322111110 11222334443 345588
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..|+.+..+ -.+.+|||||++.+..|...|..++ +.+.++|| +|.+.+|..+++.|+.|+.+|||
T Consensus 254 ~~l~dl~~~----------~~q~~if~nt~r~v~~l~~~L~~~~--~~~s~~~~---d~~q~~R~~~~~ef~~gssrvlI 318 (397)
T KOG0327|consen 254 DTLCDLYRR----------VTQAVIFCNTRRKVDNLTDKLRAHG--FTVSAIHG---DMEQNERDTLMREFRSGSSRVLI 318 (397)
T ss_pred cHHHHHHHh----------hhcceEEecchhhHHHHHHHHhhCC--ceEEEeec---ccchhhhhHHHHHhhcCCceEEe
Confidence 888888773 2678999999999999999998888 99999999 99999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHHHcc
Q psy4150 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKIINN 254 (395)
Q Consensus 181 aT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~~ 254 (395)
+|++++||+|+..+++|||||+|....+|+||+||+||.| .|.++.++++.+.. ....+++..+.
T Consensus 319 ttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~---------~lk~ie~~y~~ 384 (397)
T KOG0327|consen 319 TTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVR---------DLKDIEKFYNT 384 (397)
T ss_pred eccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHH---------HHHhHHHhcCC
Confidence 9999999999999999999999999999999999999996 78888888765542 23556665544
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=2.3e-24 Score=232.42 Aligned_cols=151 Identities=17% Similarity=0.276 Sum_probs=115.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccC----C--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLE----P--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGE 193 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~----~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~ 193 (395)
+.++||||+|+..|+.++..|.+.. + ..++..+|| ++++.+|.+++++|++|++++|||||++++|||||+
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hg---g~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~ 347 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRA---GYLPEDRRELERALRDGELLGVATTNALELGVDISG 347 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheec---CCCHHHHHHHHHHHHcCCceEEEECchHhccCCccc
Confidence 4799999999999999999887631 1 257788899 999999999999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhHhhhccccccccC-ceEEEEEeCCchhhHHHHHHHHhHHHHHHHHcccchhhhhcccCCCCCCCC
Q psy4150 194 IDLVICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAKNGPRMIPAH 272 (395)
Q Consensus 194 v~~VI~~d~p~s~~~yiQr~GRagR~~~-g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~i~~~ 272 (395)
+++||+||+|.+..+|+||+|||||.|. |.+++++.+...+..+ ...+++.++.......+...++..+..|
T Consensus 348 vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~-------~~~~~~~~~~~~e~~~~~~~n~~il~~h 420 (742)
T TIGR03817 348 LDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYL-------VHHPEALFDRPVEATVFDPDNPYVLGPH 420 (742)
T ss_pred ccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHH-------HhCHHHHhcCCCccceeCCCcHHHHHHH
Confidence 9999999999999999999999999974 5555554433322222 2344556655433323344555555556
Q ss_pred cchhhhhh
Q psy4150 273 VTPRIKCL 280 (395)
Q Consensus 273 ~~~~~~~~ 280 (395)
+.+.+.+.
T Consensus 421 l~~aa~e~ 428 (742)
T TIGR03817 421 LCCAAAEL 428 (742)
T ss_pred HHHHHhcC
Confidence 65555444
No 34
>KOG4284|consensus
Probab=99.90 E-value=2e-24 Score=218.52 Aligned_cols=202 Identities=19% Similarity=0.262 Sum_probs=169.3
Q ss_pred hHHHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeecccc-
Q psy4150 24 MIQRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHL- 98 (395)
Q Consensus 24 ~lead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 98 (395)
+-|||..++ -+|.+.+++|... ..||.+.||||.|.... ....+|.+|.++..-......+...+ ..+..+.+
T Consensus 173 LDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQ--yv~~~~s~n 250 (980)
T KOG4284|consen 173 LDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQ--YVVAKCSPN 250 (980)
T ss_pred eccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhh--eeeeccCCc
Confidence 348998888 7888889988774 67999999999998763 56788999998877666555554443 11222223
Q ss_pred --------HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 99 --------KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 99 --------K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
|+..|.+++.. -+..++||||+....|+-++.+|...| +.|.++.| .|+|.+|..++..
T Consensus 251 nsveemrlklq~L~~vf~~--------ipy~QAlVF~~~~sra~~~a~~L~ssG--~d~~~ISg---aM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKS--------IPYVQALVFCDQISRAEPIATHLKSSG--LDVTFISG---AMSQKDRLLAVDQ 317 (980)
T ss_pred chHHHHHHHHHHHHHHHhh--------CchHHHHhhhhhhhhhhHHHHHhhccC--CCeEEecc---ccchhHHHHHHHH
Confidence 55555555544 456789999999999999999999999 99999999 9999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHH
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTS 240 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~ 240 (395)
++.-.++|||+||+.+||||-+.|++|||.|+|.+..+|.||||||||.| .|.++.|++.+.+...|..+
T Consensus 318 lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 318 LRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred hhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999998 79999999998887666443
No 35
>KOG0346|consensus
Probab=99.90 E-value=3.4e-24 Score=209.23 Aligned_cols=196 Identities=17% Similarity=0.247 Sum_probs=160.0
Q ss_pred HHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccccccc-cccCChhHHHHHHhhcccccccccceee--eccccH
Q psy4150 25 IQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDGSCP-ILGKDNDLQNLLQQLKPKLDINIMSSEY--AWSHLK 99 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~~~~-~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~K 99 (395)
-|||.++..|+.+.+..|.++ ..-|.++.|||++..+...+ .++.+|-...+-... ....+.+.|.+ +...+|
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~e--l~~~dqL~Qy~v~cse~DK 254 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGE--LPNPDQLTQYQVKCSEEDK 254 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEecccc--CCCcccceEEEEEeccchh
Confidence 499999999999999999887 45688999999998875433 344555433222111 11122233333 356679
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
+-.++.+|.-.+-. +++||||||.+.|..|--+|...| ++.+++.| .|+...|..++++|..|-++++
T Consensus 255 flllyallKL~LI~-------gKsliFVNtIdr~YrLkLfLeqFG--iksciLNs---eLP~NSR~Hii~QFNkG~Ydiv 322 (569)
T KOG0346|consen 255 FLLLYALLKLRLIR-------GKSLIFVNTIDRCYRLKLFLEQFG--IKSCILNS---ELPANSRCHIIEQFNKGLYDIV 322 (569)
T ss_pred HHHHHHHHHHHHhc-------CceEEEEechhhhHHHHHHHHHhC--cHhhhhcc---cccccchhhHHHHhhCcceeEE
Confidence 99888888776554 899999999999999999999999 99999999 9999999999999999999999
Q ss_pred EEcCc-----------------------------------cccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-Cce
Q psy4150 180 IATSV-----------------------------------GEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGR 223 (395)
Q Consensus 180 VaT~v-----------------------------------~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~ 223 (395)
||||. ++||||+.+|..|||||+|.++.+||||+|||||++ .|.
T Consensus 323 IAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt 402 (569)
T KOG0346|consen 323 IATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT 402 (569)
T ss_pred EEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCc
Confidence 99991 359999999999999999999999999999999996 788
Q ss_pred EEEEEeCCchh
Q psy4150 224 CVILLTQGREA 234 (395)
Q Consensus 224 ~i~l~~~~~e~ 234 (395)
++.|+.+.++.
T Consensus 403 alSfv~P~e~~ 413 (569)
T KOG0346|consen 403 ALSFVSPKEEF 413 (569)
T ss_pred eEEEecchHHh
Confidence 88888876554
No 36
>PTZ00424 helicase 45; Provisional
Probab=99.90 E-value=7.1e-24 Score=213.83 Aligned_cols=189 Identities=22% Similarity=0.312 Sum_probs=137.5
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeeccc---cH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSH---LK 99 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~K 99 (395)
|+|.+...++...+..+... ...+.+.+|||++.... ....++.++....+ .. .......+.+.+.... .+
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~ 254 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILV-KK--DELTLEGIRQFYVAVEKEEWK 254 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEe-CC--CCcccCCceEEEEecChHHHH
Confidence 88888888877554444333 34678899999986541 11122222211100 00 0011111222232222 24
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...+..++.. ....++||||+|+..++.+++.|...+ +.+..+|| ++++.+|..+++.|++|+++||
T Consensus 255 ~~~l~~~~~~--------~~~~~~ivF~~t~~~~~~l~~~l~~~~--~~~~~~h~---~~~~~~R~~i~~~f~~g~~~vL 321 (401)
T PTZ00424 255 FDTLCDLYET--------LTITQAIIYCNTRRKVDYLTKKMHERD--FTVSCMHG---DMDQKDRDLIMREFRSGSTRVL 321 (401)
T ss_pred HHHHHHHHHh--------cCCCeEEEEecCcHHHHHHHHHHHHCC--CcEEEEeC---CCCHHHHHHHHHHHHcCCCCEE
Confidence 4444444332 235789999999999999999999888 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
|||+++++|||+|+|++||+||+|.+..+|+||+||+||.| .|.+++++++
T Consensus 322 vaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~ 373 (401)
T PTZ00424 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTP 373 (401)
T ss_pred EEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcH
Confidence 99999999999999999999999999999999999999996 7778877754
No 37
>KOG0334|consensus
Probab=99.90 E-value=3.5e-24 Score=227.68 Aligned_cols=192 Identities=22% Similarity=0.323 Sum_probs=157.8
Q ss_pred hHHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee---ccc
Q psy4150 24 MIQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA---WSH 97 (395)
Q Consensus 24 ~lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~ 97 (395)
+.|||.|++|||.+.+-.|+.+ ..||+.+||||++..+. ....++..| +. ++......+ ...+.+.+. ..+
T Consensus 521 ~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~P-ve-iiv~~~svV-~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 521 LDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKP-VE-IIVGGRSVV-CKEVTQVVRVCAIEN 597 (997)
T ss_pred echhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCC-ee-EEEccceeE-eccceEEEEEecCch
Confidence 4599999999999887777775 67999999999998763 223344433 22 111121111 111233322 367
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|+.+|.+||.+... ..++||||.....|+.|.+-|.+.| +.+..+|| +.++.+|..++++|++|.++
T Consensus 598 eKf~kL~eLl~e~~e-------~~~tiiFv~~qe~~d~l~~~L~~ag--~~~~slHG---gv~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 598 EKFLKLLELLGERYE-------DGKTIIFVDKQEKADALLRDLQKAG--YNCDSLHG---GVDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred HHHHHHHHHHHHHhh-------cCCEEEEEcCchHHHHHHHHHHhcC--cchhhhcC---CCchHHHHhHHHHHhccCce
Confidence 899999999988765 4899999999999999999999888 89999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
+||||+++++|||+.++.+|||||+|.....|+||+|||||.| .|.+++|+.+
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh
Confidence 9999999999999999999999999999999999999999996 7888888887
No 38
>KOG0344|consensus
Probab=99.90 E-value=1e-23 Score=212.58 Aligned_cols=190 Identities=21% Similarity=0.351 Sum_probs=140.8
Q ss_pred HHHHHHhc-chHHHHHHHHhC---CCcchhhhccccCccccc-cccccCChhHHHHHHhhcccccccccceeeec---cc
Q psy4150 26 QRDFHVTH-SLASALENLVTY---GLRSFYNNLVEVSKEDGS-CPILGKDNDLQNLLQQLKPKLDINIMSSEYAW---SH 97 (395)
Q Consensus 26 ead~~~~~-~l~~~~~~L~~~---g~r~~~~fsatl~~~~~~-~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~ 97 (395)
|+|..+.- +|..++.-|... ..-..-+||||++..+.- +...+.+. ..-++. ..+.. ...+.|...+ ..
T Consensus 296 EaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~-~~vivg-~~~sa-~~~V~QelvF~gse~ 372 (593)
T KOG0344|consen 296 EADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDL-KRVIVG-LRNSA-NETVDQELVFCGSEK 372 (593)
T ss_pred hHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccc-eeEEEe-cchhH-hhhhhhhheeeecch
Confidence 88988888 777665555442 333455788988876621 11111111 000110 11100 1112233332 34
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHc-ccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK-PLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~-~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
.|+-.+.+++..- -..++|||+.+.+.|..|...|. -.+ +.+.++|| +.++.+|.++++.|+.|++
T Consensus 373 ~K~lA~rq~v~~g--------~~PP~lIfVQs~eRak~L~~~L~~~~~--i~v~vIh~---e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 373 GKLLALRQLVASG--------FKPPVLIFVQSKERAKQLFEELEIYDN--INVDVIHG---ERSQKQRDETMERFRIGKI 439 (593)
T ss_pred hHHHHHHHHHhcc--------CCCCeEEEEecHHHHHHHHHHhhhccC--cceeeEec---ccchhHHHHHHHHHhccCe
Confidence 4777777777663 35799999999999999999994 444 99999999 9999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 177 NTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 177 ~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+|||||++++||||+.+|++|||||+|.+..+|+||+||+||+| .|.++.|+++.
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~ 495 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQ 495 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccc
Confidence 99999999999999999999999999999999999999999997 78999998873
No 39
>KOG0347|consensus
Probab=99.89 E-value=3.1e-23 Score=207.07 Aligned_cols=212 Identities=19% Similarity=0.200 Sum_probs=145.0
Q ss_pred HHHHHHhcchHHHHHHHHhC-------CCcchhhhccccCcccc---------ccccccCChhHHHHHHhhccccccccc
Q psy4150 26 QRDFHVTHSLASALENLVTY-------GLRSFYNNLVEVSKEDG---------SCPILGKDNDLQNLLQQLKPKLDINIM 89 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~-------g~r~~~~fsatl~~~~~---------~~~~l~~~~~~~~~v~~~~~~~~~~~~ 89 (395)
|+|+|+.-|..+.+..|..+ ..+|++.||||++-... ..+..-.+..+..++..+.-.- +.
T Consensus 348 EaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~--kp- 424 (731)
T KOG0347|consen 348 EADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRG--KP- 424 (731)
T ss_pred cHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccC--CC-
Confidence 88999888877665555442 46899999999875331 1122222333333333322110 00
Q ss_pred ceeeeccccHHHHHHHHHHHHHHh---hhc-------cCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCC
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRL---HAE-------KGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGV 159 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~---~~~-------~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~ 159 (395)
.+....+-...-..+.+..+.- ..+ ....+++|||||+.+.+..|+-+|...+ +.+..||. .|
T Consensus 425 --kiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~--i~p~~LHA---~M 497 (731)
T KOG0347|consen 425 --KIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLD--IPPLPLHA---SM 497 (731)
T ss_pred --eeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcC--CCCchhhH---HH
Confidence 1111111111111111111110 000 1237899999999999999999999999 99999999 99
Q ss_pred CHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHH
Q psy4150 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQ 238 (395)
Q Consensus 160 ~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~ 238 (395)
.|.+|...+++|+.....|||||||++||||||.|.+||+|-+|.+..-|+||.|||+|++ .|..++++.+ .+...
T Consensus 498 ~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P-~e~~~-- 574 (731)
T KOG0347|consen 498 IQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGP-QEVGP-- 574 (731)
T ss_pred HHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeCh-HHhHH--
Confidence 9999999999999999999999999999999999999999999999999999999999997 5555555554 44433
Q ss_pred HHHHHhHHHHHHHHcccc
Q psy4150 239 TSMQTCKSYVEKIINNKS 256 (395)
Q Consensus 239 ~~~~~~~~~i~~~i~~~~ 256 (395)
+..+.+.+....
T Consensus 575 ------~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 575 ------LKKLCKTLKKKE 586 (731)
T ss_pred ------HHHHHHHHhhcc
Confidence 344555555443
No 40
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.89 E-value=1.9e-22 Score=219.14 Aligned_cols=106 Identities=23% Similarity=0.336 Sum_probs=100.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
+..+||||+|+..|+.++..|...| +.+..+|| +|++.+|..+++.|+.|+++|||||+++++|||+|+|++||+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~G--ika~~YHA---GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH 754 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFG--HKAAFYHG---SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH 754 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCC--CCeeeeeC---CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE
Confidence 4679999999999999999999999 99999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 200 FDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 200 ~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
||+|.+++.|+||+|||||.| .|.+++|+..
T Consensus 755 ydlPkSiEsYyQriGRAGRDG~~g~cILlys~ 786 (1195)
T PLN03137 755 HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY 786 (1195)
T ss_pred cCCCCCHHHHHhhhcccCCCCCCceEEEEecH
Confidence 999999999999999999997 6777777654
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=2e-22 Score=207.90 Aligned_cols=108 Identities=21% Similarity=0.373 Sum_probs=101.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
.+.++||||+|++.++.++..|...| +.+..+|| +|++.+|..+++.|+.|+++|||||+++++|||+|+|++||
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~g--~~~~~~H~---~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI 299 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNLG--IAAGAYHA---GLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI 299 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhcC--CCeeEeeC---CCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE
Confidence 35677999999999999999999998 99999999 99999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 199 CFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 199 ~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+||+|.+...|+||+|||||.| .|.+++++...
T Consensus 300 ~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~ 333 (470)
T TIGR00614 300 HYSLPKSMESYYQESGRAGRDGLPSECHLFYAPA 333 (470)
T ss_pred EeCCCCCHHHHHhhhcCcCCCCCCceEEEEechh
Confidence 9999999999999999999997 66777776654
No 42
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=8.3e-22 Score=209.05 Aligned_cols=110 Identities=18% Similarity=0.346 Sum_probs=102.5
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEE
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLV 197 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~V 197 (395)
..+.++||||+|++.|+.++..|...| +.+..+|| +|++.+|..++++|+.|+++|||||+++++|||+|+|++|
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g--~~v~~~Ha---~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~V 308 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRG--ISAAAYHA---GLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFV 308 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCC--CCEEEecC---CCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEE
Confidence 346799999999999999999999998 99999999 9999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 198 ICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 198 I~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
|+||+|.|..+|+||+|||||.| .|.+++|+...+
T Consensus 309 I~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 309 VHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred EEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 99999999999999999999997 677777766543
No 43
>PRK13766 Hef nuclease; Provisional
Probab=99.88 E-value=1.7e-21 Score=212.48 Aligned_cols=190 Identities=38% Similarity=0.627 Sum_probs=151.2
Q ss_pred hcchHHHHHHHHhCCCcchhhhccccCccc------cccccccCChhHHHHHHhhcccccccccceeeeccccHHHHHHH
Q psy4150 32 THSLASALENLVTYGLRSFYNNLVEVSKED------GSCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHLKFIRLRE 105 (395)
Q Consensus 32 ~~~l~~~~~~L~~~g~r~~~~fsatl~~~~------~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~K~~~L~~ 105 (395)
.+.+.++..++..++...++.|+.++.... .....+..++.+...+.... .....+||+..|.+
T Consensus 285 ~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~pK~~~L~~ 354 (773)
T PRK13766 285 AMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAK----------ELDIEHPKLEKLRE 354 (773)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHH----------hcccCChHHHHHHH
Confidence 344566777777777777777766543222 01223444444444443221 11345799999999
Q ss_pred HHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEecc-----CCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ-----SSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 106 lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~-----~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
+|.+.+.. ..+.++||||+++++|+.|+++|...+ +.+..+||. +++|++.+|..++.+|+.|+++|||
T Consensus 355 il~~~~~~----~~~~kvlIF~~~~~t~~~L~~~L~~~~--~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLv 428 (773)
T PRK13766 355 IVKEQLGK----NPDSRIIVFTQYRDTAEKIVDLLEKEG--IKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLV 428 (773)
T ss_pred HHHHHHhc----CCCCeEEEEeCcHHHHHHHHHHHHhCC--CceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 99988754 467899999999999999999998888 889999995 3359999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhHH
Q psy4150 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNF 237 (395)
Q Consensus 181 aT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~ 237 (395)
||+++++|+|+|.|++||+||+|+++..|+||+||+||.|.|.++++++.++.++.+
T Consensus 429 aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee~~ 485 (773)
T PRK13766 429 STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDEAY 485 (773)
T ss_pred ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCCChHHHH
Confidence 999999999999999999999999999999999999999999999999988765543
No 44
>KOG0350|consensus
Probab=99.87 E-value=5.4e-22 Score=196.49 Aligned_cols=113 Identities=27% Similarity=0.469 Sum_probs=102.2
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHc-ccC-CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLK-PLE-PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEID 195 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~-~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~ 195 (395)
....++|+|+++..++..|+..|. ..+ +.+++..+.| +++...|.+.++.|..|+++||||||+++||||+.+|+
T Consensus 427 ~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~---~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~ 503 (620)
T KOG0350|consen 427 NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG---QLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVD 503 (620)
T ss_pred hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh---hhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccc
Confidence 346899999999999999999998 332 3478888999 99999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 196 LVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 196 ~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
.|||||+|.+..+|+||+|||||+| .|.++.++...+.
T Consensus 504 ~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 504 NVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEK 542 (620)
T ss_pred eEeecCCCchhhHHHHhhcccccccCCceEEEeeccccc
Confidence 9999999999999999999999997 7888888776544
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.85 E-value=7.9e-21 Score=201.28 Aligned_cols=122 Identities=23% Similarity=0.336 Sum_probs=108.3
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
...+...+.++|..+ .+.++||||+|+..|+.+++.|...| +.+..+|| +|++.+|..+++.|..|+
T Consensus 208 ~~~~~~~l~~~l~~~--------~~~~~IIf~~sr~~~e~la~~L~~~g--~~~~~~H~---~l~~~~R~~i~~~F~~g~ 274 (591)
T TIGR01389 208 KNNKQKFLLDYLKKH--------RGQSGIIYASSRKKVEELAERLESQG--ISALAYHA---GLSNKVRAENQEDFLYDD 274 (591)
T ss_pred CCCHHHHHHHHHHhc--------CCCCEEEEECcHHHHHHHHHHHHhCC--CCEEEEEC---CCCHHHHHHHHHHHHcCC
Confidence 345666666666542 35789999999999999999999988 99999999 999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 176 FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 176 ~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
++|||||+++++|||+|+|++||+||+|.|..+|+|++|||||.| .|.+++++..
T Consensus 275 ~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~ 330 (591)
T TIGR01389 275 VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSP 330 (591)
T ss_pred CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCH
Confidence 999999999999999999999999999999999999999999998 5666655544
No 46
>KOG0337|consensus
Probab=99.84 E-value=1.2e-21 Score=190.68 Aligned_cols=196 Identities=19% Similarity=0.200 Sum_probs=157.3
Q ss_pred HHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccc-cccccccCChhHHHHHHhhcccccccc-cceeeeccccHH
Q psy4150 25 IQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKED-GSCPILGKDNDLQNLLQQLKPKLDINI-MSSEYAWSHLKF 100 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~-~~~~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~K~ 100 (395)
-|+|..+.|||.+.+..+... +-+|+++||||+|+.. ...+.-+.+|-++.+- ....+.... ..-.++....|.
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRld--vetkise~lk~~f~~~~~a~K~ 248 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLD--VETKISELLKVRFFRVRKAEKE 248 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEee--hhhhcchhhhhheeeeccHHHH
Confidence 489999999999987777664 6789999999999763 2223333344333211 111111111 222334566788
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..|+.++..+.. ..+++|||.|+..++.+...|+..| +.+..+.| .|++..|..-+.+|+.+...+||
T Consensus 249 aaLl~il~~~~~-------~~~t~vf~~tk~hve~~~~ll~~~g--~~~s~iys---slD~~aRk~~~~~F~~~k~~~lv 316 (529)
T KOG0337|consen 249 AALLSILGGRIK-------DKQTIVFVATKHHVEYVRGLLRDFG--GEGSDIYS---SLDQEARKINGRDFRGRKTSILV 316 (529)
T ss_pred HHHHHHHhcccc-------ccceeEEecccchHHHHHHHHHhcC--CCcccccc---ccChHhhhhccccccCCccceEE
Confidence 888888877644 4789999999999999999999999 88999999 99999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 181 aT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
.||+++||+|||-.+.|||||+|.+..-|+||+||++|+| .|.+|.++.+.+..
T Consensus 317 vTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 317 VTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred EehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccch
Confidence 9999999999999999999999999999999999999997 89999998876654
No 47
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.83 E-value=3.6e-20 Score=198.49 Aligned_cols=183 Identities=17% Similarity=0.258 Sum_probs=130.0
Q ss_pred HHHHHHhcchHHHHHHHHhC----C-C--cchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeec-c
Q psy4150 26 QRDFHVTHSLASALENLVTY----G-L--RSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW-S 96 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~----g-~--r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~ 96 (395)
|+| ++++|.+.+..|... + . +|+++||||++.... ....++.++....+.. .......+.+.+.. .
T Consensus 179 EAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~---~~l~a~ki~q~v~v~~ 253 (844)
T TIGR02621 179 EAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK---KRLAAKKIVKLVPPSD 253 (844)
T ss_pred hhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc---ccccccceEEEEecCh
Confidence 899 889999998888773 1 1 589999999987652 1122333332222211 11111112232222 2
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHH-----HHHHHH
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQK-----EIMKKF 171 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~-----~~l~~F 171 (395)
..|+..+...+...+. ..++++||||||+..|+.+++.|.+.+ + ..+|| +|++.+|. .++++|
T Consensus 254 e~Kl~~lv~~L~~ll~-----e~g~~vLVF~NTv~~Aq~L~~~L~~~g--~--~lLHG---~m~q~dR~~~~~~~il~~F 321 (844)
T TIGR02621 254 EKFLSTMVKELNLLMK-----DSGGAILVFCRTVKHVRKVFAKLPKEK--F--ELLTG---TLRGAERDDLVKKEIFNRF 321 (844)
T ss_pred HHHHHHHHHHHHHHHh-----hCCCcEEEEECCHHHHHHHHHHHHhcC--C--eEeeC---CCCHHHHhhHHHHHHHHHH
Confidence 3355555554444332 235789999999999999999999877 5 89999 99999999 889999
Q ss_pred hc----CC-------ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC--ceEEEEE
Q psy4150 172 RA----GE-------FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN--GRCVILL 228 (395)
Q Consensus 172 k~----g~-------~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~--g~~i~l~ 228 (395)
+. |. ..|||||+++++||||+. ++||++..| ..+|+||+||+||.|. +..+.++
T Consensus 322 k~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 322 LPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred hccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 87 54 789999999999999986 899998877 6899999999999963 3334444
No 48
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=1.1e-19 Score=198.58 Aligned_cols=113 Identities=21% Similarity=0.336 Sum_probs=103.9
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHc-ccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK-PLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~-~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
..+|++.|.++|..+ .+.++||||+++.++..|.+.|. ..| +++..+|| +|++.+|.++++.|+++
T Consensus 477 ~d~Ki~~L~~~L~~~--------~~~KvLVF~~~~~t~~~L~~~L~~~~G--i~~~~ihG---~~s~~eR~~~~~~F~~~ 543 (956)
T PRK04914 477 FDPRVEWLIDFLKSH--------RSEKVLVICAKAATALQLEQALREREG--IRAAVFHE---GMSIIERDRAAAYFADE 543 (956)
T ss_pred cCHHHHHHHHHHHhc--------CCCeEEEEeCcHHHHHHHHHHHhhccC--eeEEEEEC---CCCHHHHHHHHHHHhcC
Confidence 457888888888663 35799999999999999999995 567 99999999 99999999999999985
Q ss_pred --CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC
Q psy4150 175 --EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221 (395)
Q Consensus 175 --~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~ 221 (395)
.++|||||+++++|+|++.+++|||||+|||+..|+||+||+||.|+
T Consensus 544 ~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ 592 (956)
T PRK04914 544 EDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQ 592 (956)
T ss_pred CCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCC
Confidence 69999999999999999999999999999999999999999999984
No 49
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.82 E-value=2.1e-20 Score=198.36 Aligned_cols=191 Identities=16% Similarity=0.114 Sum_probs=131.0
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccccccccccCChhHHHHHHhhcccccccccceeeeccc------
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDGSCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSH------ 97 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------ 97 (395)
|+|.+..++ +-.+.++... ..++.++||||++........++.++.++.+. ... ...+.+.|....
T Consensus 299 EaHEr~~~~-DllL~llk~~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~----grt-~~pV~~~yi~~~~~~~~~ 372 (675)
T PHA02653 299 EVHEHDQIG-DIIIAVARKHIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIP----GGT-LFPISEVYVKNKYNPKNK 372 (675)
T ss_pred ccccCccch-hHHHHHHHHhhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeC----CCc-CCCeEEEEeecCcccccc
Confidence 676666655 2223333322 34689999999986653333444444333221 110 011223332111
Q ss_pred -----cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHH-
Q psy4150 98 -----LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF- 171 (395)
Q Consensus 98 -----~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~F- 171 (395)
.....+..++.... ...++++||||+++..++.+++.|.+..+.+.+..+|| +|++. .+++++|
T Consensus 373 ~~y~~~~k~~~l~~L~~~~-----~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG---~Lsq~--eq~l~~ff 442 (675)
T PHA02653 373 RAYIEEEKKNIVTALKKYT-----PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHG---KVPNI--DEILEKVY 442 (675)
T ss_pred hhhhHHHHHHHHHHHHHhh-----cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccC---CcCHH--HHHHHHHh
Confidence 11111222222211 12346899999999999999999998744489999999 99975 5677887
Q ss_pred hcCCccEEEEcCccccCCCCCCCCEEEEcC---CCC---------ChhhHhhhccccccccCceEEEEEeCCc
Q psy4150 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFD---AQK---------SPIKMVQRLGRTGRKRNGRCVILLTQGR 232 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip~v~~VI~~d---~p~---------s~~~yiQr~GRagR~~~g~~i~l~~~~~ 232 (395)
+.|+.+||||||++++|||||+|++||++| .|. |..+|+||+|||||.+.|.++.++++.+
T Consensus 443 ~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~ 515 (675)
T PHA02653 443 SSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDL 515 (675)
T ss_pred ccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCCCeEEEEECHHH
Confidence 789999999999999999999999999999 564 7889999999999999999999987654
No 50
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.81 E-value=6.2e-20 Score=182.62 Aligned_cols=121 Identities=24% Similarity=0.272 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHH----HHHHHhc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE----IMKKFRA 173 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~----~l~~Fk~ 173 (395)
.+...+..++... ..+.++||||+|++.|+.+++.|.+.++...+..+|| ++++.+|.. +++.|++
T Consensus 207 ~~~~~l~~l~~~~-------~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~---~~~~~~r~~~~~~~~~~f~~ 276 (358)
T TIGR01587 207 GEISSLERLLEFI-------KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHS---RFTEKDRAKKEAELLEEMKK 276 (358)
T ss_pred cCHHHHHHHHHHh-------hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEEC---CCCHHHHHHHHHHHHHHhcC
Confidence 4666666666443 2358999999999999999999998885567999999 999999976 4899999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC-----ceEEEEEeCC
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-----GRCVILLTQG 231 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~-----g~~i~l~~~~ 231 (395)
|...|||||+++++|+|++ +++||+++.| +.+|+||+||+||.|. |.++++...+
T Consensus 277 ~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 277 NEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred CCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 9999999999999999996 8999999877 7899999999999852 2555554433
No 51
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.79 E-value=1e-18 Score=147.50 Aligned_cols=118 Identities=33% Similarity=0.599 Sum_probs=107.2
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|...+.+++..+.. .+.++||||++...++.+.+.|.+.+ ..+.++|| +++..+|..++..|+.|...
T Consensus 12 ~k~~~i~~~i~~~~~------~~~~~lvf~~~~~~~~~~~~~l~~~~--~~~~~~~~---~~~~~~~~~~~~~f~~~~~~ 80 (131)
T cd00079 12 EKLEALLELLKEHLK------KGGKVLIFCPSKKMLDELAELLRKPG--IKVAALHG---DGSQEEREEVLKDFREGEIV 80 (131)
T ss_pred HHHHHHHHHHHhccc------CCCcEEEEeCcHHHHHHHHHHHHhcC--CcEEEEEC---CCCHHHHHHHHHHHHcCCCc
Confidence 588888888877532 36899999999999999999998866 88999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEE
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVI 226 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~ 226 (395)
+|+||+++++|+|+|.+++||.++.|++...|+|++||++|.| .|.+++
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEe
Confidence 9999999999999999999999999999999999999999998 555543
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.79 E-value=1.8e-19 Score=202.77 Aligned_cols=98 Identities=29% Similarity=0.433 Sum_probs=88.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC-------------------------------CCceeEEeccCCCCCHHHHHHHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP-------------------------------MVKASMFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~-------------------------------~~~~~~lhg~~~~~~~~~R~~~l 168 (395)
..++||||||+..|+.++..|.+... .+.+.++|| +|++.+|..++
T Consensus 244 ~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHG---sLSkeeR~~IE 320 (1490)
T PRK09751 244 HRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHG---SVSKEQRAITE 320 (1490)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccc---cCCHHHHHHHH
Confidence 47899999999999999999976421 012445667 99999999999
Q ss_pred HHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc
Q psy4150 169 KKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR 220 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~ 220 (395)
+.|++|++++||||+++++||||++|++||+|+.|.+..+|+||+||+||..
T Consensus 321 ~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 321 QALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred HHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999984
No 53
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.79 E-value=1.1e-18 Score=191.82 Aligned_cols=110 Identities=26% Similarity=0.431 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC----CCceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP----MVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~----~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
..+...|...... +.++||||+|+..|+.++..|.+..+ ...+.++|| +|++.+|..+++.|++|++
T Consensus 271 ~~l~~~L~~~i~~------~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg---~ls~~~R~~ve~~fk~G~i 341 (876)
T PRK13767 271 EALYETLHELIKE------HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHS---SLSREVRLEVEEKLKRGEL 341 (876)
T ss_pred HHHHHHHHHHHhc------CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeC---CCCHHHHHHHHHHHHcCCC
Confidence 3444555554432 47899999999999999999987432 256888888 9999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc
Q psy4150 177 NTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219 (395)
Q Consensus 177 ~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~ 219 (395)
+|||||+++++|||+|+|++||+||.|.+..+|+||+||+||.
T Consensus 342 ~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 342 KVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred eEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999997
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=9.6e-19 Score=183.72 Aligned_cols=127 Identities=14% Similarity=0.143 Sum_probs=106.7
Q ss_pred eeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 92 EYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 92 ~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.|.....|...|.+++..... .+.++||||+|+..++.|+..|.+.| +++..||| +++ +|...+..|
T Consensus 451 v~~t~~~K~~aL~~~i~~~~~------~~~pvLIft~t~~~se~L~~~L~~~g--i~~~~Lhg---~~~--~rE~~ii~~ 517 (656)
T PRK12898 451 VFLTAAAKWAAVAARVRELHA------QGRPVLVGTRSVAASERLSALLREAG--LPHQVLNA---KQD--AEEAAIVAR 517 (656)
T ss_pred EEeCHHHHHHHHHHHHHHHHh------cCCCEEEEeCcHHHHHHHHHHHHHCC--CCEEEeeC---CcH--HHHHHHHHH
Confidence 344556688888888876432 24679999999999999999999999 99999999 755 555566667
Q ss_pred hcCCccEEEEcCccccCCCCC---CCC-----EEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 172 RAGEFNTLIATSVGEEGLDIG---EID-----LVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip---~v~-----~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+.+...|+||||+++||+||+ +|. +||+||.|.|...|+||+|||||.| .|.++++++..
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 767778999999999999999 676 9999999999999999999999998 67777777653
No 55
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.3e-18 Score=179.71 Aligned_cols=110 Identities=23% Similarity=0.369 Sum_probs=103.0
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEE
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLV 197 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~V 197 (395)
......||||.|++.++.+++.|...| +.+..+|| +|+..+|..+.+.|..+++.|+|||.+++.|||-|+|.+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g--~~a~~YHa---Gl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV 302 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNG--ISAGAYHA---GLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV 302 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCC--CceEEecC---CCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEE
Confidence 345779999999999999999999998 99999999 9999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 198 ICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 198 I~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
|+||+|.|.++|+|-+|||||.| ...+++++.+.+
T Consensus 303 iH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 303 IHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred EEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 99999999999999999999998 566777776655
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.78 E-value=7.9e-19 Score=195.95 Aligned_cols=108 Identities=23% Similarity=0.321 Sum_probs=96.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
+++++|||+++..++.+++.|.+..|.+++..+|| +|++.+|.+++.+|++|+++|||||+++++|||+|+|++||+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG---~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi 885 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG---QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeC---CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE
Confidence 47999999999999999999999877789999999 999999999999999999999999999999999999999996
Q ss_pred cCCC-CChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 200 FDAQ-KSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 200 ~d~p-~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
.+++ .+...|+||+||+||.| .|.+++++..
T Consensus 886 ~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 6554 35668999999999997 5666655543
No 57
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.2e-18 Score=186.60 Aligned_cols=130 Identities=17% Similarity=0.196 Sum_probs=112.9
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..|.....|...|.+.+..... .+.++||||+|+..++.|+..|.+.| +++..+|| ++.+.++..+...
T Consensus 405 ~i~~~~~~K~~al~~~i~~~~~------~~~pvLIf~~t~~~se~l~~~L~~~g--i~~~~L~~---~~~~~e~~~i~~a 473 (790)
T PRK09200 405 KVFVTLDEKYKAVIEEVKERHE------TGRPVLIGTGSIEQSETFSKLLDEAG--IPHNLLNA---KNAAKEAQIIAEA 473 (790)
T ss_pred eEEcCHHHHHHHHHHHHHHHHh------cCCCEEEEeCcHHHHHHHHHHHHHCC--CCEEEecC---CccHHHHHHHHHc
Confidence 4455667788888888866422 36899999999999999999999999 99999999 8889888888888
Q ss_pred HhcCCccEEEEcCccccCCCC---CCCC-----EEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 171 FRAGEFNTLIATSVGEEGLDI---GEID-----LVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDi---p~v~-----~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
++.| .|+||||+++||+|| |+|. +||+||+|.+...|+||+|||||.| .|.++++++..++
T Consensus 474 g~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 474 GQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred CCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 7766 799999999999999 7998 9999999999999999999999998 6777777766443
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.78 E-value=6.4e-19 Score=192.94 Aligned_cols=109 Identities=27% Similarity=0.415 Sum_probs=100.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
+++++|||+++..++.+++.|.+..|.+++..+|| +|++.+|..++++|++|+++|||||+++++|||+|+|++||+
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG---~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi 736 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHG---QMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII 736 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecC---CCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE
Confidence 58999999999999999999998766689999999 999999999999999999999999999999999999999999
Q ss_pred cCCCC-ChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 200 FDAQK-SPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 200 ~d~p~-s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+++|. +..+|+||+||+||.| .|.|++++...
T Consensus 737 ~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 737 ERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 99976 6779999999999996 67777776543
No 59
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.76 E-value=1.5e-18 Score=134.82 Aligned_cols=77 Identities=39% Similarity=0.664 Sum_probs=73.9
Q ss_pred HHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccc
Q psy4150 139 VLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218 (395)
Q Consensus 139 ~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR 218 (395)
+|...+ +.+..+|| ++++.+|..+++.|++|...|||||+++++|+|+|.+++||+|++|+|+..|+|++||+||
T Consensus 2 ~L~~~~--~~~~~i~~---~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 2 FLEKKG--IKVAIIHG---DMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp HHHHTT--SSEEEEST---TSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred ChHHCC--CcEEEEEC---CCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 566777 99999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q psy4150 219 KR 220 (395)
Q Consensus 219 ~~ 220 (395)
.|
T Consensus 77 ~g 78 (78)
T PF00271_consen 77 IG 78 (78)
T ss_dssp TT
T ss_pred CC
Confidence 75
No 60
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.74 E-value=2.2e-17 Score=177.39 Aligned_cols=127 Identities=21% Similarity=0.379 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCc--------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANY--------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI 167 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t--------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~ 167 (395)
...+...+.+.+..... .+.+++|||++ ...++.+++.|.+..+.+++..+|| +|++.+|..+
T Consensus 453 ~~~~~~~~~~~i~~~~~------~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG---~m~~~eR~~i 523 (681)
T PRK10917 453 PDSRRDEVYERIREEIA------KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHG---RMKPAEKDAV 523 (681)
T ss_pred CcccHHHHHHHHHHHHH------cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeC---CCCHHHHHHH
Confidence 34455566666665543 36899999995 4567788888888765589999999 9999999999
Q ss_pred HHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC-ChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 168 MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 168 l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+++|++|+++|||||+++++|+|+|++++||+||+|. ....|.||+||+||.| .|.|++++..+
T Consensus 524 ~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~ 589 (681)
T PRK10917 524 MAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDP 589 (681)
T ss_pred HHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCC
Confidence 9999999999999999999999999999999999997 5778888999999997 67777666433
No 61
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.74 E-value=1.2e-17 Score=177.51 Aligned_cols=130 Identities=17% Similarity=0.203 Sum_probs=112.3
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
...|.....|...+.+.+.+... .+.++||||+|+..++.|+..|.+.| +++..+|| .+++.++..+..
T Consensus 400 d~i~~~~~~K~~ai~~~i~~~~~------~~~pvLIft~s~~~se~ls~~L~~~g--i~~~~L~a---~~~~~E~~ii~~ 468 (762)
T TIGR03714 400 DKIYATLPEKLMATLEDVKEYHE------TGQPVLLITGSVEMSEIYSELLLREG--IPHNLLNA---QNAAKEAQIIAE 468 (762)
T ss_pred CeEEECHHHHHHHHHHHHHHHhh------CCCCEEEEECcHHHHHHHHHHHHHCC--CCEEEecC---CChHHHHHHHHH
Confidence 34566777899999888876533 36899999999999999999999999 99999999 999999888877
Q ss_pred HHhcCCccEEEEcCccccCCCCC---------CCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIG---------EIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip---------~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
.|+.| .|+||||+++||+||+ ++.+|++|++|..... +||+|||||.| .|.+++|++..+.
T Consensus 469 ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 469 AGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred cCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 77776 7999999999999999 9999999999988766 99999999998 6777777766443
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.73 E-value=5.1e-17 Score=173.25 Aligned_cols=123 Identities=22% Similarity=0.388 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcH--------HHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYR--------VVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~--------~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
....+...+...+.. +.+++|||++. ..++.+++.|.+..+.+.+..+|| +|++.+|..++++
T Consensus 433 ~~~~~~~~i~~~l~~------g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG---~m~~~eR~~i~~~ 503 (630)
T TIGR00643 433 EKDIVYEFIEEEIAK------GRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHG---RMKSDEKEAVMEE 503 (630)
T ss_pred hHHHHHHHHHHHHHh------CCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeC---CCCHHHHHHHHHH
Confidence 345566666555433 58999999875 567788888887655689999999 9999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC-ChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
|++|+++|||||+++++|||+|++++||+||+|. +...|.||+||+||.| .|.|++++..
T Consensus 504 F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 504 FREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred HHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 9999999999999999999999999999999997 6778889999999997 6777766633
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.72 E-value=4.7e-17 Score=172.17 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=114.2
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..|.....|+.++.+.+.+... .+.++||||+|+..++.|++.|.+.| +++..+|| . +.+|...+..
T Consensus 382 ~i~~t~~~k~~ai~~~i~~~~~------~grpvLV~t~si~~se~ls~~L~~~g--i~~~~Lna---~--q~~rEa~ii~ 448 (745)
T TIGR00963 382 LVYKTEEEKWKAVVDEIKERHA------KGQPVLVGTTSVEKSELLSNLLKERG--IPHNVLNA---K--NHEREAEIIA 448 (745)
T ss_pred eEEcCHHHHHHHHHHHHHHHHh------cCCCEEEEeCcHHHHHHHHHHHHHcC--CCeEEeeC---C--hHHHHHHHHH
Confidence 3445566788887776655433 37899999999999999999999999 99999999 5 8899999999
Q ss_pred HhcCCccEEEEcCccccCCCCCC-------CCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGE-------IDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~-------v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
|+.+...|+||||+++||+||+. ..+||+++.|.|...|.||+|||||.| .|.+.++++..++.
T Consensus 449 ~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l 520 (745)
T TIGR00963 449 QAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNL 520 (745)
T ss_pred hcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHH
Confidence 99999999999999999999998 559999999999999999999999998 68888888776543
No 64
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.71 E-value=3.4e-17 Score=177.61 Aligned_cols=109 Identities=24% Similarity=0.333 Sum_probs=99.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHccc-CCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPL-EPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~-~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
.+.+|||++++..++.+++.|.+. ++.+.+..+|| +|++.+|..+++.|++|..+||||||++++|||||+|++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg---~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYG---ELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecC---CCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEE
Confidence 478999999999999999999873 23488999999 99999999999999999999999999999999999999999
Q ss_pred EcCCCC------------------ChhhHhhhccccccccCceEEEEEeCC
Q psy4150 199 CFDAQK------------------SPIKMVQRLGRTGRKRNGRCVILLTQG 231 (395)
Q Consensus 199 ~~d~p~------------------s~~~yiQr~GRagR~~~g~~i~l~~~~ 231 (395)
+++.|. |..+|+||.|||||.+.|.||.++++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHH
Confidence 999986 234699999999999999999998753
No 65
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.71 E-value=1.6e-17 Score=184.48 Aligned_cols=188 Identities=17% Similarity=0.175 Sum_probs=127.2
Q ss_pred HHH-HHHhcchHHH--HHHHHhCCCcchhhhccccCccccccccccCChhHHHHHHhhcccccccccceeeeccc-----
Q psy4150 26 QRD-FHVTHSLASA--LENLVTYGLRSFYNNLVEVSKEDGSCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSH----- 97 (395)
Q Consensus 26 ead-~~~~~~l~~~--~~~L~~~g~r~~~~fsatl~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----- 97 (395)
|+| +++.++|.-. ...+...+..+.+.+|||++... ....+. +...+.+ .... ..+...|....
T Consensus 194 EAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSATid~e~-fs~~F~-~apvI~V----~Gr~--~pVei~y~p~~~~~~~ 265 (1294)
T PRK11131 194 EAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPER-FSRHFN-NAPIIEV----SGRT--YPVEVRYRPIVEEADD 265 (1294)
T ss_pred CccccccccchHHHHHHHhhhcCCCceEEEeeCCCCHHH-HHHHcC-CCCEEEE----cCcc--ccceEEEeecccccch
Confidence 777 5666666532 22333334568899999997432 222222 2211111 1110 11222332211
Q ss_pred cHHHHHHHH---HHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 98 LKFIRLREI---LESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 98 ~K~~~L~~l---L~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.+.+.+..+ +..+.. ...+.+|||+++...++.+++.|.+.+ +.+.+..+|| ++++.+|..+++. .
T Consensus 266 ~~~d~l~~ll~~V~~l~~-----~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg---~Ls~~eQ~~Vf~~--~ 335 (1294)
T PRK11131 266 TERDQLQAIFDAVDELGR-----EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYA---RLSNSEQNRVFQS--H 335 (1294)
T ss_pred hhHHHHHHHHHHHHHHhc-----CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeeccc---CCCHHHHHHHhcc--c
Confidence 123333333 333221 346789999999999999999999876 2234677888 9999999999986 5
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcC---------------CC---CChhhHhhhccccccccCceEEEEEeCC
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFD---------------AQ---KSPIKMVQRLGRTGRKRNGRCVILLTQG 231 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d---------------~p---~s~~~yiQr~GRagR~~~g~~i~l~~~~ 231 (395)
|..+||||||++++|||||+|++||+++ +| .|..+|+||+|||||.+.|.|+.++++.
T Consensus 336 g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~ 411 (1294)
T PRK11131 336 SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSED 411 (1294)
T ss_pred CCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHH
Confidence 8899999999999999999999999986 33 3557899999999999999999998754
No 66
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=1.5e-16 Score=169.04 Aligned_cols=128 Identities=24% Similarity=0.384 Sum_probs=107.1
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC-
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG- 174 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g- 174 (395)
.+.|+..+..++..|- ..+.++||||.+...++.++..|. +.++|| ++++.+|..++++|+.|
T Consensus 478 np~K~~~~~~Li~~he------~~g~kiLVF~~~~~~l~~~a~~L~-------~~~I~G---~ts~~ER~~il~~Fr~~~ 541 (732)
T TIGR00603 478 NPNKFRACQFLIRFHE------QRGDKIIVFSDNVFALKEYAIKLG-------KPFIYG---PTSQQERMQILQNFQHNP 541 (732)
T ss_pred ChHHHHHHHHHHHHHh------hcCCeEEEEeCCHHHHHHHHHHcC-------CceEEC---CCCHHHHHHHHHHHHhCC
Confidence 3456666666665542 246899999999999999998873 346899 99999999999999975
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCC-ChhhHhhhccccccccCc-e-------EEEEEeCCchhhHHHH
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPIKMVQRLGRTGRKRNG-R-------CVILLTQGREAHNFQT 239 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~yiQr~GRagR~~~g-~-------~i~l~~~~~e~~~~~~ 239 (395)
.+++||+|+++.+|||+|++++||+++.|. |...|+||+||++|.+.+ . +|.+++.++.+..+..
T Consensus 542 ~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 542 KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHH
Confidence 889999999999999999999999999984 999999999999999633 2 2778888888877653
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.70 E-value=4.3e-17 Score=177.06 Aligned_cols=110 Identities=24% Similarity=0.343 Sum_probs=99.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHccc-CCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPL-EPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~-~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
.+.+|||++++..++.+++.|... +..+.+..+|| +|++.+|..++..|+.|..+||||||++++|||||+|++||
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg---~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYG---ALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeC---CCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEE
Confidence 578999999999999999999862 23488999999 99999999999999999999999999999999999999999
Q ss_pred EcCCCCC------------------hhhHhhhccccccccCceEEEEEeCCc
Q psy4150 199 CFDAQKS------------------PIKMVQRLGRTGRKRNGRCVILLTQGR 232 (395)
Q Consensus 199 ~~d~p~s------------------~~~yiQr~GRagR~~~g~~i~l~~~~~ 232 (395)
+++.++. ..+|+||.|||||.+.|.||.++++..
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~ 340 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQ 340 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHH
Confidence 9887753 358999999999999999999987643
No 68
>PRK00254 ski2-like helicase; Provisional
Probab=99.69 E-value=7.6e-17 Score=174.54 Aligned_cols=193 Identities=17% Similarity=0.235 Sum_probs=123.3
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccccccccccCChhHHHHHHhhcccccccc-cceeee-ccccHH-
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDGSCPILGKDNDLQNLLQQLKPKLDINI-MSSEYA-WSHLKF- 100 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~~~~~l~~~~~~~~~v~~~~~~~~~~~-~~~~~~-~~~~K~- 100 (395)
|++.+.+.+....++.+... +..+.+.+|||++.....+.++.. ..+. ....+...... ..+.+. ....+.
T Consensus 146 E~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~-~~~~---~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 146 EIHLIGSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNA-ELVV---SDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred CcCccCCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCC-cccc---CCCCCCcceeeEecCCeeeccCcchh
Confidence 55666555666666666654 346788899998754322222211 1100 01111000000 001111 111111
Q ss_pred ---HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC----------------------C---------C
Q psy4150 101 ---IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE----------------------P---------M 146 (395)
Q Consensus 101 ---~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~----------------------~---------~ 146 (395)
.....++.+.... +.++||||+|+..|+.++..|.... + .
T Consensus 222 ~~~~~~~~~~~~~i~~------~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 295 (720)
T PRK00254 222 RFPNSWESLVYDAVKK------GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALR 295 (720)
T ss_pred cchHHHHHHHHHHHHh------CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHh
Confidence 2223334343332 5799999999999998887664210 0 0
Q ss_pred CceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE-------cCCCC-ChhhHhhhcccccc
Q psy4150 147 VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC-------FDAQK-SPIKMVQRLGRTGR 218 (395)
Q Consensus 147 ~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~-------~d~p~-s~~~yiQr~GRagR 218 (395)
..+.++|| +|++.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|+||+|||||
T Consensus 296 ~gv~~hHa---gl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 372 (720)
T PRK00254 296 GGVAFHHA---GLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGR 372 (720)
T ss_pred hCEEEeCC---CCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCC
Confidence 24677788 999999999999999999999999999999999999999994 56555 56799999999999
Q ss_pred cc---CceEEEEEeCC
Q psy4150 219 KR---NGRCVILLTQG 231 (395)
Q Consensus 219 ~~---~g~~i~l~~~~ 231 (395)
.| .|.+++++...
T Consensus 373 ~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 373 PKYDEVGEAIIVATTE 388 (720)
T ss_pred CCcCCCceEEEEecCc
Confidence 85 57788777653
No 69
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=1.6e-16 Score=169.40 Aligned_cols=131 Identities=19% Similarity=0.190 Sum_probs=113.3
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..|.....|...+.+.+..... .+.++||||+|+..++.|+..|.+.| +++..+|+ ++.+.++..+.+.
T Consensus 417 ~i~~t~~~K~~al~~~i~~~~~------~g~pvLI~t~si~~se~ls~~L~~~g--i~~~~Lna---~~~~~Ea~ii~~a 485 (796)
T PRK12906 417 LLYPTLDSKFNAVVKEIKERHA------KGQPVLVGTVAIESSERLSHLLDEAG--IPHAVLNA---KNHAKEAEIIMNA 485 (796)
T ss_pred eEEcCHHHHHHHHHHHHHHHHh------CCCCEEEEeCcHHHHHHHHHHHHHCC--CCeeEecC---CcHHHHHHHHHhc
Confidence 3455667788888888866432 47899999999999999999999999 99999999 8888888888887
Q ss_pred HhcCCccEEEEcCccccCCCC---CCCC-----EEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 171 FRAGEFNTLIATSVGEEGLDI---GEID-----LVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDi---p~v~-----~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
++.|. |+||||+++||+|| ++|. +||+++.|.|...|.|+.|||||.| +|.+.++++..++.
T Consensus 486 g~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 486 GQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred CCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchH
Confidence 77777 99999999999999 4899 9999999999999999999999998 68888777766443
No 70
>PRK02362 ski2-like helicase; Provisional
Probab=99.68 E-value=2e-16 Score=171.66 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=94.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC----------------------------------CCceeEEeccCCCCCHHHHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP----------------------------------MVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~----------------------------------~~~~~~lhg~~~~~~~~~R~ 165 (395)
++++||||+|+..|+.++..|..... ...+.++|| +|++.+|.
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHa---gl~~~eR~ 319 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHA---GLSREHRE 319 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecC---CCCHHHHH
Confidence 58999999999999999988865321 024667788 99999999
Q ss_pred HHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE----cC-----CCCChhhHhhhcccccccc---CceEEEEEeCC
Q psy4150 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC----FD-----AQKSPIKMVQRLGRTGRKR---NGRCVILLTQG 231 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~----~d-----~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~ 231 (395)
.+++.|++|.++|||||+++++|+|+|.+.+||+ || .|.+..+|+||+|||||.| .|.+++++...
T Consensus 320 ~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 320 LVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999997 77 5889999999999999997 37777776554
No 71
>KOG0349|consensus
Probab=99.68 E-value=7.9e-17 Score=157.60 Aligned_cols=114 Identities=24% Similarity=0.347 Sum_probs=105.8
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEE
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLV 197 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~V 197 (395)
.-.++||||.|+..|+.|..++.+.|. .+.+.++|| +..+.+|.+.++.|+.+..+.|||||+++|||||..+.++
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhg---DrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHG---DRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEec---CCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceE
Confidence 457999999999999999999998764 689999999 9999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHhhhccccccc-cCceEEEEEeCCchhh
Q psy4150 198 ICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAH 235 (395)
Q Consensus 198 I~~d~p~s~~~yiQr~GRagR~-~~g~~i~l~~~~~e~~ 235 (395)
||..+|.....|+||+||+||+ +-|-++.++....+.-
T Consensus 581 invtlpd~k~nyvhrigrvgraermglaislvat~~ekv 619 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKV 619 (725)
T ss_pred EEEecCcccchhhhhhhccchhhhcceeEEEeeccchhe
Confidence 9999999999999999999999 6899998887766543
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.67 E-value=2.9e-16 Score=163.28 Aligned_cols=99 Identities=23% Similarity=0.336 Sum_probs=93.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEc-CccccCCCCCCCCEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT-SVGEEGLDIGEIDLVI 198 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT-~v~~~GlDip~v~~VI 198 (395)
+.++||||++.++++.|++.|.+.+ +++.++|| ++++.+|..+++.|+.|...||||| ++++||+|+|++++||
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~~g--~~v~~i~G---~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vI 418 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKKVY--DKVYYVSG---EVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVI 418 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHcC--CCEEEEeC---CCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEE
Confidence 5789999999999999999999988 89999999 9999999999999999999999998 8999999999999999
Q ss_pred EcCCCCChhhHhhhccccccccCce
Q psy4150 199 CFDAQKSPIKMVQRLGRTGRKRNGR 223 (395)
Q Consensus 199 ~~d~p~s~~~yiQr~GRagR~~~g~ 223 (395)
+++++.+...|+||+||++|.+.|+
T Consensus 419 l~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 419 FAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999996544
No 73
>PRK01172 ski2-like helicase; Provisional
Probab=99.66 E-value=2.8e-16 Score=169.02 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=90.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCC-----------------------CceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPM-----------------------VKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~-----------------------~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
++++||||++++.|+.++..|....+. ..+.++|| +|++.+|..+++.|++|.+
T Consensus 236 ~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~ha---gl~~~eR~~ve~~f~~g~i 312 (674)
T PRK01172 236 GGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHA---GLSNEQRRFIEEMFRNRYI 312 (674)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecC---CCCHHHHHHHHHHHHcCCC
Confidence 579999999999999999988654211 13566777 9999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEcCC---------CCChhhHhhhcccccccc---CceEEEEEeCCc
Q psy4150 177 NTLIATSVGEEGLDIGEIDLVICFDA---------QKSPIKMVQRLGRTGRKR---NGRCVILLTQGR 232 (395)
Q Consensus 177 ~vLVaT~v~~~GlDip~v~~VI~~d~---------p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~ 232 (395)
+|||||+++++|+|+|.. .||++|. |.+..+|.||+|||||.| .|.+++++...+
T Consensus 313 ~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 313 KVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred eEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 999999999999999986 5555554 457889999999999997 577777765543
No 74
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=4.2e-16 Score=167.54 Aligned_cols=132 Identities=17% Similarity=0.184 Sum_probs=114.6
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
...|.....|+..|.+.+..... .+.++||||+|+..++.|+..|...+ +++.+||+ .+.+|...+-
T Consensus 574 d~vy~t~~eK~~Ali~~I~~~~~------~grpVLIft~Sve~sE~Ls~~L~~~g--I~h~vLna-----kq~~REa~Ii 640 (1025)
T PRK12900 574 DLVYKTRREKYNAIVLKVEELQK------KGQPVLVGTASVEVSETLSRMLRAKR--IAHNVLNA-----KQHDREAEIV 640 (1025)
T ss_pred CeEecCHHHHHHHHHHHHHHHhh------CCCCEEEEeCcHHHHHHHHHHHHHcC--CCceeecC-----CHHHhHHHHH
Confidence 34455667799999998877543 36899999999999999999999999 99999997 4889999999
Q ss_pred HHhcCCccEEEEcCccccCCCCC---CCC-----EEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIG---EID-----LVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip---~v~-----~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
.|+.+...|+||||+++||+||+ +|. +||+++.|.|...|.||+|||||.| +|.+++|++..++.
T Consensus 641 a~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 641 AEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred HhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999999999999999999999 554 4499999999999999999999998 78888887775544
No 75
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.65 E-value=5.6e-16 Score=165.64 Aligned_cols=120 Identities=29% Similarity=0.458 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..+...|.+.... ...+||||||+.++|.++..|.+.++ ..+...|| .++...|..+.++|++|+.+++|
T Consensus 240 ~~~~~~i~~~v~~------~~ttLIF~NTR~~aE~l~~~L~~~~~-~~i~~HHg---SlSre~R~~vE~~lk~G~lravV 309 (814)
T COG1201 240 AALYERIAELVKK------HRTTLIFTNTRSGAERLAFRLKKLGP-DIIEVHHG---SLSRELRLEVEERLKEGELKAVV 309 (814)
T ss_pred HHHHHHHHHHHhh------cCcEEEEEeChHHHHHHHHHHHHhcC-Cceeeecc---cccHHHHHHHHHHHhcCCceEEE
Confidence 3344444444443 25799999999999999999999874 45555566 99999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc-c-CceEEEEEeC
Q psy4150 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-R-NGRCVILLTQ 230 (395)
Q Consensus 181 aT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~-~-~g~~i~l~~~ 230 (395)
||+.++-|||+++|++||+|+.|.++..++||+||+|+. + ..+.+++..+
T Consensus 310 ~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 310 ATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999998 3 3445555443
No 76
>KOG0329|consensus
Probab=99.64 E-value=1.2e-16 Score=147.23 Aligned_cols=162 Identities=19% Similarity=0.313 Sum_probs=122.7
Q ss_pred HHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeec--cccH
Q psy4150 26 QRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW--SHLK 99 (395)
Q Consensus 26 ead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~K 99 (395)
|.|.|+. +.+..++..+... .-.|.++||||++++++ .|+.+|.+| .+++.+....+....+.|.|.. ...|
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdP--mEi~vDdE~KLtLHGLqQ~YvkLke~eK 270 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDP--MEIFVDDEAKLTLHGLQQYYVKLKENEK 270 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCc--hhhhccchhhhhhhhHHHHHHhhhhhhh
Confidence 6665544 3334555555443 45788999999999886 899999999 6666666666666667777764 4568
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
..+|.++|..+ ...+++||+.+... ++ | .-+ |
T Consensus 271 Nrkl~dLLd~L--------eFNQVvIFvKsv~R--------------------------l~----------f---~kr-~ 302 (387)
T KOG0329|consen 271 NRKLNDLLDVL--------EFNQVVIFVKSVQR--------------------------LS----------F---QKR-L 302 (387)
T ss_pred hhhhhhhhhhh--------hhcceeEeeehhhh--------------------------hh----------h---hhh-h
Confidence 88888877654 24789999987654 00 2 122 7
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHH
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNF 237 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~ 237 (395)
|||++.+||+||..|++|+|||.|.++.+|+||+|||||.| .|-++.++....+...+
T Consensus 303 vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 303 VATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKIL 361 (387)
T ss_pred HHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHh
Confidence 99999999999999999999999999999999999999998 67788888776655443
No 77
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=8.6e-16 Score=118.85 Aligned_cols=81 Identities=43% Similarity=0.765 Sum_probs=76.3
Q ss_pred HHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcc
Q psy4150 135 EIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLG 214 (395)
Q Consensus 135 ~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~G 214 (395)
.+++.|...+ +.+..+|| +++..+|..+++.|..|...|||+|+++++|+|+|.++.||.+++|++...|+|++|
T Consensus 2 ~l~~~l~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~g 76 (82)
T smart00490 2 ELAELLKELG--IKVARLHG---GLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIG 76 (82)
T ss_pred HHHHHHHHCC--CeEEEEEC---CCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhc
Confidence 4667777777 89999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy4150 215 RTGRKR 220 (395)
Q Consensus 215 RagR~~ 220 (395)
|++|.|
T Consensus 77 R~~R~g 82 (82)
T smart00490 77 RAGRAG 82 (82)
T ss_pred ccccCC
Confidence 999975
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.63 E-value=5e-16 Score=173.13 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
+...+...+..+.. ...+.+|||+++...++.+++.|.+.+ +.+.+..+|| +|++.+|..+++.+ +..+
T Consensus 263 ~~~~i~~~I~~l~~-----~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg---~Ls~~eQ~~vf~~~--~~rk 332 (1283)
T TIGR01967 263 QLEAILDAVDELFA-----EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYA---RLSNKEQQRVFQPH--SGRR 332 (1283)
T ss_pred HHHHHHHHHHHHHh-----hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccC---CCCHHHHHHHhCCC--CCce
Confidence 45556666655543 235789999999999999999998765 2366788999 99999999987654 3469
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCC------------------ChhhHhhhccccccccCceEEEEEeCCc
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQK------------------SPIKMVQRLGRTGRKRNGRCVILLTQGR 232 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~------------------s~~~yiQr~GRagR~~~g~~i~l~~~~~ 232 (395)
||||||++++|||||+|.+||+++++. |..+|+||.|||||.+.|.||.++++.+
T Consensus 333 IVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~ 405 (1283)
T TIGR01967 333 IVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEED 405 (1283)
T ss_pred EEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHH
Confidence 999999999999999999999999543 5679999999999999999999987543
No 79
>PRK09401 reverse gyrase; Reviewed
Probab=99.62 E-value=7.1e-16 Score=172.79 Aligned_cols=149 Identities=17% Similarity=0.185 Sum_probs=109.7
Q ss_pred CcchhhhccccCcc-ccccccccCChhHHHHHHhhcccccccccceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEE
Q psy4150 47 LRSFYNNLVEVSKE-DGSCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHLKFIRLREILESHFRLHAEKGETTKVII 125 (395)
Q Consensus 47 ~r~~~~fsatl~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iV 125 (395)
.++++.||||+++. ... .++.+..... +.. .......+.+.|.....|...|.+++..+ +.++||
T Consensus 268 ~~q~ilfSAT~~~~~~~~--~l~~~ll~~~-v~~--~~~~~rnI~~~yi~~~~k~~~L~~ll~~l---------~~~~LI 333 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRV--KLFRELLGFE-VGS--PVFYLRNIVDSYIVDEDSVEKLVELVKRL---------GDGGLI 333 (1176)
T ss_pred CceEEEEeCCCCccchHH--HHhhccceEE-ecC--cccccCCceEEEEEcccHHHHHHHHHHhc---------CCCEEE
Confidence 46889999999764 311 1111110000 010 01111224455555557888888777542 357999
Q ss_pred EcCcHHH---HHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEE----cCccccCCCCCC-CCEE
Q psy4150 126 FANYRVV---VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA----TSVGEEGLDIGE-IDLV 197 (395)
Q Consensus 126 F~~t~~~---ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVa----T~v~~~GlDip~-v~~V 197 (395)
||+|+.. |+.|+++|...| +++..+|| +| ...+++|++|+++|||| ||+++||||+|+ |.+|
T Consensus 334 Fv~t~~~~~~ae~l~~~L~~~g--i~v~~~hg---~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 334 FVPSDKGKEYAEELAEYLEDLG--INAELAIS---GF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred EEecccChHHHHHHHHHHHHCC--CcEEEEeC---cH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 9999877 999999999999 99999999 88 23469999999999999 699999999999 8999
Q ss_pred EEcCCCC------ChhhHhhhccccccc
Q psy4150 198 ICFDAQK------SPIKMVQRLGRTGRK 219 (395)
Q Consensus 198 I~~d~p~------s~~~yiQr~GRagR~ 219 (395)
||||+|. ....|.||+||+...
T Consensus 404 I~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 404 IFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 9999998 678899999999643
No 80
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.59 E-value=5.7e-15 Score=147.37 Aligned_cols=87 Identities=22% Similarity=0.288 Sum_probs=76.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
.+.++||||+|+..++.++..|++.+..+.+..+|| .+++.+|.++ ++.+|||||+++++|||++.+ +||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g---~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITG---FAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeec---CCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE
Confidence 467999999999999999999998764467888999 8999988654 478999999999999999987 565
Q ss_pred EcCCCCChhhHhhhccccc
Q psy4150 199 CFDAQKSPIKMVQRLGRTG 217 (395)
Q Consensus 199 ~~d~p~s~~~yiQr~GRag 217 (395)
++ |.+..+|+||+||+|
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 55 889999999999997
No 81
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.58 E-value=7.2e-15 Score=148.38 Aligned_cols=134 Identities=23% Similarity=0.394 Sum_probs=118.0
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
...|.+.+..+.+..+..-++....+++|||+++++.|..|+..|...| +++..+|+ +|+..+|..+...|.+++
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG--~~a~pYHa---GL~y~eRk~vE~~F~~q~ 490 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKG--LKAAPYHA---GLPYKERKSVERAFAAQE 490 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCC--cccccccC---CCcHHHHHHHHHHHhcCC
Confidence 5679999999998887775666678899999999999999999999999 99999999 999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCCCEEE---EcCCCC-ChhhHhhhcccccccc---CceEEEEEeCCchh
Q psy4150 176 FNTLIATSVGEEGLDIGEIDLVI---CFDAQK-SPIKMVQRLGRTGRKR---NGRCVILLTQGREA 234 (395)
Q Consensus 176 ~~vLVaT~v~~~GlDip~v~~VI---~~d~p~-s~~~yiQr~GRagR~~---~g~~i~l~~~~~e~ 234 (395)
+.++|+|-.++-|+|+|.-.+|+ -.+..| |+..|.|+.|||||.+ .|.+++++.++...
T Consensus 491 l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y 556 (830)
T COG1202 491 LAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKY 556 (830)
T ss_pred cceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhh
Confidence 99999999999999999765553 234455 8999999999999995 79999998887544
No 82
>KOG0351|consensus
Probab=99.57 E-value=1e-14 Score=158.85 Aligned_cols=109 Identities=24% Similarity=0.373 Sum_probs=101.4
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEE
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLV 197 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~V 197 (395)
.+...+||+|.++.+|+.++..|+..| +++..+|+ +|+..+|..+.++|-.++++|+|||=+.+.|||.|+|..|
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~--~~a~~YHA---Gl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~V 557 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLG--KSAAFYHA---GLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFV 557 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhc--hhhHhhhc---CCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEE
Confidence 567899999999999999999999999 99999999 9999999999999999999999999999999999999999
Q ss_pred EEcCCCCChhhHhhhccccccccC-ceEEEEEeCC
Q psy4150 198 ICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLTQG 231 (395)
Q Consensus 198 I~~d~p~s~~~yiQr~GRagR~~~-g~~i~l~~~~ 231 (395)
|+|.+|++.+.|.|-+|||||.|. ..+++|+...
T Consensus 558 iH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 558 IHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred EECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 999999999999999999999984 5555555443
No 83
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.56 E-value=4.6e-14 Score=155.35 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=118.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
..+.|+..|..+|..+.. .+.+||||++...+.+.|.++|...+ +....++| +++..+|..+++.|...
T Consensus 468 e~SgKl~lLdkLL~~Lk~------~g~KVLIFSQft~~LdiLed~L~~~g--~~y~rIdG---sts~~eRq~~Id~Fn~~ 536 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKE------RDSRVLIFSQMTRLLDILEDYLMYRG--YQYCRIDG---NTGGEDRDASIDAFNKP 536 (1033)
T ss_pred hhhhHHHHHHHHHHHHHh------cCCeEEeehhHHHHHHHHHHHHHHcC--CcEEEECC---CCCHHHHHHHHHHhccc
Confidence 346789888888877643 37899999999999999999999888 89999999 99999999999999763
Q ss_pred ---CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCc---eEEEEEeCCchhhHHHHHH
Q psy4150 175 ---EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNG---RCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 175 ---~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g---~~i~l~~~~~e~~~~~~~~ 241 (395)
.+-+|++|.+++.|||+..+++||+||+||||..+.|++||+.|.|+. .++.|++.++.+..+....
T Consensus 537 ~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 537 GSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred cCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 345799999999999999999999999999999999999999999843 4567888888777766555
No 84
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.50 E-value=6.9e-14 Score=157.09 Aligned_cols=98 Identities=24% Similarity=0.282 Sum_probs=83.1
Q ss_pred cceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcH---HHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHH
Q psy4150 89 MSSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYR---VVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 89 ~~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~---~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~ 165 (395)
+.+.|.....+...|.++|... +.++||||+|+ +.|+.|++.|.+.| +++..+|| ++++
T Consensus 304 I~~~~~~~~~~~~~L~~ll~~l---------~~~~IVFv~t~~~~~~a~~l~~~L~~~g--~~a~~lhg---~~~~---- 365 (1171)
T TIGR01054 304 VVDVYVEDEDLKETLLEIVKKL---------GTGGIVYVSIDYGKEKAEEIAEFLENHG--VKAVAYHA---TKPK---- 365 (1171)
T ss_pred eEEEEEecccHHHHHHHHHHHc---------CCCEEEEEeccccHHHHHHHHHHHHhCC--ceEEEEeC---CCCH----
Confidence 4555555444456666666542 36799999999 99999999999998 99999999 8863
Q ss_pred HHHHHHhcCCccEEEE----cCccccCCCCCC-CCEEEEcCCCC
Q psy4150 166 EIMKKFRAGEFNTLIA----TSVGEEGLDIGE-IDLVICFDAQK 204 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVa----T~v~~~GlDip~-v~~VI~~d~p~ 204 (395)
.++++|++|+++|||| ||+++||||+|+ |++||+||+|.
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6899999999999999 599999999999 89999999997
No 85
>PRK14701 reverse gyrase; Provisional
Probab=99.49 E-value=2e-14 Score=164.69 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=92.5
Q ss_pred cceeeecc-ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHH---HHHHHHHHcccCCCCceeEEeccCCCCCHHHH
Q psy4150 89 MSSEYAWS-HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVV---VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQ 164 (395)
Q Consensus 89 ~~~~~~~~-~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~---ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R 164 (395)
+.+.|... .+....|.++|..+ +..+||||+|+.. |+.|++.|...| +++..+|| + |
T Consensus 307 i~~~yi~~~~~~k~~L~~ll~~~---------g~~gIVF~~t~~~~e~ae~la~~L~~~G--i~a~~~h~---~-----R 367 (1638)
T PRK14701 307 IVDVYLNPEKIIKEHVRELLKKL---------GKGGLIFVPIDEGAEKAEEIEKYLLEDG--FKIELVSA---K-----N 367 (1638)
T ss_pred cEEEEEECCHHHHHHHHHHHHhC---------CCCeEEEEeccccchHHHHHHHHHHHCC--CeEEEecc---h-----H
Confidence 44555432 22224566655432 3679999999886 589999999999 99999999 4 8
Q ss_pred HHHHHHHhcCCccEEEEc----CccccCCCCCC-CCEEEEcCCCC---ChhhHhhhc-------------ccccccc
Q psy4150 165 KEIMKKFRAGEFNTLIAT----SVGEEGLDIGE-IDLVICFDAQK---SPIKMVQRL-------------GRTGRKR 220 (395)
Q Consensus 165 ~~~l~~Fk~g~~~vLVaT----~v~~~GlDip~-v~~VI~~d~p~---s~~~yiQr~-------------GRagR~~ 220 (395)
..++++|++|+++||||| ++++||||+|+ |.+||+||+|+ +...|.|.. ||+||.|
T Consensus 368 ~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 368 KKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred HHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 899999999999999999 59999999999 99999999999 888777766 9999887
No 86
>KOG0352|consensus
Probab=99.47 E-value=2.1e-13 Score=133.77 Aligned_cols=113 Identities=19% Similarity=0.287 Sum_probs=101.9
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
.+-.||||.|++.||.++-.|...| +.+..+|. ++...+|.++.+++-.|++.|++||...+.|+|-|+|.+||+
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~G--i~A~AYHA---GLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH 329 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIAG--IPAMAYHA---GLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH 329 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhcC--cchHHHhc---ccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe
Confidence 4568999999999999999999999 99999999 999999999999999999999999999999999999999999
Q ss_pred cCCCCChhhHhhhccccccccCceEEEEEeCCchhhHH
Q psy4150 200 FDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNF 237 (395)
Q Consensus 200 ~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~ 237 (395)
||+|.|...|.|-.|||||.|....+-++..-.+.+.+
T Consensus 330 W~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 330 WSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNAL 367 (641)
T ss_pred cCchhhhHHHHHhccccccCCCccceeeeecccchHHH
Confidence 99999999999999999999966665555544444433
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=6.1e-13 Score=138.26 Aligned_cols=98 Identities=22% Similarity=0.334 Sum_probs=79.8
Q ss_pred HHHHHHHHcccCCCCceeEEeccCCCCCHHHH--HHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC------
Q psy4150 133 VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQ--KEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK------ 204 (395)
Q Consensus 133 ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R--~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~------ 204 (395)
++.+.+.|.+..|..++..+|+ ++++..+ ..++++|++|+++|||+|+++++|+|+|+|++|+.+|.+.
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~---d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDS---DTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEec---ccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 6889999999888899999999 8876655 8999999999999999999999999999999996555432
Q ss_pred ------ChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 205 ------SPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 205 ------s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
....|+|++||+||.+ .|.+++. +...+.
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiq-t~~p~~ 383 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQ-TYNPNH 383 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEE-eCCCCC
Confidence 2467899999999986 4555544 433333
No 88
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.43 E-value=1.7e-12 Score=124.53 Aligned_cols=134 Identities=23% Similarity=0.358 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 102 RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 102 ~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
+|..+|+.+... +.+++||+++....+.++..|++..|.....+.|+ ....|.+.++.||+|++.+||+
T Consensus 293 kl~~~lekq~~~------~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs-----~d~~R~EkV~~fR~G~~~lLiT 361 (441)
T COG4098 293 KLKRWLEKQRKT------GRPVLIFFPEIETMEQVAAALKKKLPKETIASVHS-----EDQHRKEKVEAFRDGKITLLIT 361 (441)
T ss_pred HHHHHHHHHHhc------CCcEEEEecchHHHHHHHHHHHhhCCccceeeeec-----cCccHHHHHHHHHcCceEEEEE
Confidence 456667666543 78999999999999999999988777677788888 3456899999999999999999
Q ss_pred cCccccCCCCCCCCEEEEcCCC--CChhhHhhhccccccc--cCceEEEEEeCCchhhHHHHHHHHhHHHHHHH
Q psy4150 182 TSVGEEGLDIGEIDLVICFDAQ--KSPIKMVQRLGRTGRK--RNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251 (395)
Q Consensus 182 T~v~~~GlDip~v~~VI~~d~p--~s~~~yiQr~GRagR~--~~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~ 251 (395)
|.+++||+.+|.|++++.-.-. -+.++++|-.||+||. ...+-++|+..+.... |..+.++|++.
T Consensus 362 TTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska-----M~~A~keIk~M 430 (441)
T COG4098 362 TTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA-----MKQARKEIKEM 430 (441)
T ss_pred eehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH-----HHHHHHHHHHH
Confidence 9999999999999987754433 4788999999999998 3444455666554432 22455555554
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.41 E-value=1.2e-12 Score=142.70 Aligned_cols=95 Identities=26% Similarity=0.413 Sum_probs=83.9
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHH----HHHHHHH-hcCC---ccEEEEcCccccCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQ----KEIMKKF-RAGE---FNTLIATSVGEEGLD 190 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R----~~~l~~F-k~g~---~~vLVaT~v~~~GlD 190 (395)
+.++||||||++.|..+++.|++.+ +...+..+|| .++..+| .++++.| ++|+ ..|||||+++++|||
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHs---rf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHA---RFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeC---CCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 6789999999999999999999764 3467899999 9999999 4678888 6676 479999999999999
Q ss_pred CCCCCEEEEcCCCCChhhHhhhcccccccc
Q psy4150 191 IGEIDLVICFDAQKSPIKMVQRLGRTGRKR 220 (395)
Q Consensus 191 ip~v~~VI~~d~p~s~~~yiQr~GRagR~~ 220 (395)
| +++++|...+| ..+|+||+||+||.+
T Consensus 637 I-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 637 L-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred c-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 9 58999999888 789999999999984
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.40 E-value=2.3e-12 Score=132.15 Aligned_cols=113 Identities=27% Similarity=0.418 Sum_probs=98.5
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|...+..++..+. .+.+++|||.+...+..++..|...+ + +..+.| ..+..+|..+++.|+.|.++
T Consensus 268 ~~~~~~~~~~~~~~-------~~~~~lif~~~~~~a~~i~~~~~~~~--~-~~~it~---~t~~~eR~~il~~fr~g~~~ 334 (442)
T COG1061 268 RKIAAVRGLLLKHA-------RGDKTLIFASDVEHAYEIAKLFLAPG--I-VEAITG---ETPKEEREAILERFRTGGIK 334 (442)
T ss_pred HHHHHHHHHHHHhc-------CCCcEEEEeccHHHHHHHHHHhcCCC--c-eEEEEC---CCCHHHHHHHHHHHHcCCCC
Confidence 34444444444432 35799999999999999999998877 6 888999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc--cCce
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK--RNGR 223 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~--~~g~ 223 (395)
+||++.++.+|+|+|+++++|......|...|+||+||.-|. |.+.
T Consensus 335 ~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 335 VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999994 4444
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.36 E-value=6.8e-12 Score=134.89 Aligned_cols=104 Identities=24% Similarity=0.257 Sum_probs=82.9
Q ss_pred HHHHHHHHHcccCCCCceeEEeccCCCCC--HHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC--C--
Q psy4150 132 VVAEIFDVLKPLEPMVKASMFVGQSSGVT--QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK--S-- 205 (395)
Q Consensus 132 ~ae~l~~~L~~~~~~~~~~~lhg~~~~~~--~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~--s-- 205 (395)
.++.+.+.|.+..|..++..+|+ +++ ..++.+++++|++|+++|||+|+++++|+|+|+|++|+.+|++. +
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~---d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDR---DTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEec---cccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 57788899988877789999999 776 46789999999999999999999999999999999997666542 2
Q ss_pred --------hhhHhhhccccccccCceEEEEEeCCchhhHHH
Q psy4150 206 --------PIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQ 238 (395)
Q Consensus 206 --------~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~ 238 (395)
...|+|++||+||.+.++.+++.+...+...+.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHH
Confidence 357999999999986444444445444443333
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.35 E-value=8.5e-12 Score=129.74 Aligned_cols=134 Identities=21% Similarity=0.336 Sum_probs=111.6
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHH--------HHHHHHHHHcccCCCCceeEEeccCCCCCHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRV--------VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQ 162 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~--------~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~ 162 (395)
..+...+.+...+.+.+.+.+.. +.++.+-|+-.+ .|+.+++.|....|.+++..+|| .|+..
T Consensus 450 ~T~~i~~~~~~~v~e~i~~ei~~------GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HG---rm~~~ 520 (677)
T COG1200 450 TTVVIPHERRPEVYERIREEIAK------GRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHG---RMKPA 520 (677)
T ss_pred EEEEeccccHHHHHHHHHHHHHc------CCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEec---CCChH
Confidence 44556667888888888776654 788999888643 57788899998888899999999 99999
Q ss_pred HHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC-ChhhHhhhccccccccCceEEEEEeCCch
Q psy4150 163 EQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPIKMVQRLGRTGRKRNGRCVILLTQGRE 233 (395)
Q Consensus 163 ~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~yiQr~GRagR~~~g~~i~l~~~~~e 233 (395)
+..+++++|++|+++|||||.|.+.|||+|+.++.|++|+-. ..+++=|-.||+||.+...+|++++....
T Consensus 521 eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 521 EKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999999999999999999999999999877 56667777799999975555556555544
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=1e-11 Score=133.52 Aligned_cols=131 Identities=18% Similarity=0.122 Sum_probs=112.2
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..|.....|+..+.+.+.+... .+.++||||+|+..++.|+..|.+.| +++..||| . +.+|...+.+
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~~------~grpVLIft~Si~~se~Ls~~L~~~g--i~~~vLna---k--q~eREa~Iia 473 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERHK------KGQPVLVGTVSIEKSELLSKLLKKAG--IPHNVLNA---K--NHEREAEIIA 473 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHHh------cCCCEEEEeCcHHHHHHHHHHHHHCC--CceEeccC---c--hHHHHHHHHH
Confidence 4455667799999888876433 36899999999999999999999999 99999999 4 7899999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCC--------------------------------------CEEEEcCCCCChhhHhhh
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGEI--------------------------------------DLVICFDAQKSPIKMVQR 212 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~v--------------------------------------~~VI~~d~p~s~~~yiQr 212 (395)
|+.+...|+||||+++||+||+=- =+||--..|.|..---|-
T Consensus 474 ~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~Ql 553 (830)
T PRK12904 474 QAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQL 553 (830)
T ss_pred hcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHh
Confidence 999999999999999999999742 278888889999999999
Q ss_pred cccccccc-CceEEEEEeCCchh
Q psy4150 213 LGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 213 ~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
.||+||.| +|.+-+|++-+++.
T Consensus 554 rGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 554 RGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred hcccccCCCCCceeEEEEcCcHH
Confidence 99999998 67777777665543
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=1.3e-11 Score=133.03 Aligned_cols=131 Identities=21% Similarity=0.139 Sum_probs=111.3
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
...|.....|+..+.+.+.+... .+.++||||+|+..++.|+..|.+.| +++..||+ .+.+.++..+.+
T Consensus 420 d~v~~t~~~k~~av~~~i~~~~~------~g~PVLVgt~Sie~sE~ls~~L~~~g--i~h~vLna---k~~q~Ea~iia~ 488 (896)
T PRK13104 420 DLVYLTQADKFQAIIEDVRECGV------RKQPVLVGTVSIEASEFLSQLLKKEN--IKHQVLNA---KFHEKEAQIIAE 488 (896)
T ss_pred CeEEcCHHHHHHHHHHHHHHHHh------CCCCEEEEeCcHHHHHHHHHHHHHcC--CCeEeecC---CCChHHHHHHHh
Confidence 34566667788888877766543 47899999999999999999999999 99999999 999999999999
Q ss_pred HHhcCCccEEEEcCccccCCCCCC--------------------------------------CCEEEEcCCCCChhhHhh
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIGE--------------------------------------IDLVICFDAQKSPIKMVQ 211 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip~--------------------------------------v~~VI~~d~p~s~~~yiQ 211 (395)
.|+.|. |+||||+++||+||-= -=+||--..+.|..---|
T Consensus 489 Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~Q 566 (896)
T PRK13104 489 AGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQ 566 (896)
T ss_pred CCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHH
Confidence 999994 9999999999999861 127788888889999999
Q ss_pred hcccccccc-CceEEEEEeCCch
Q psy4150 212 RLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 212 r~GRagR~~-~g~~i~l~~~~~e 233 (395)
-.||+||.| +|.+-+|++-+++
T Consensus 567 LrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 567 LRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hccccccCCCCCceEEEEEcCcH
Confidence 999999998 6777776665544
No 95
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=3e-11 Score=130.02 Aligned_cols=130 Identities=15% Similarity=0.121 Sum_probs=111.7
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..|.....|+.++.+-+.+... .+.++||||+|...++.|+.+|...+ +++.+||+ .+++.++..+.+.
T Consensus 426 ~iy~t~~~K~~Aii~ei~~~~~------~GrpVLV~t~sv~~se~ls~~L~~~g--i~~~vLna---k~~~~Ea~ii~~A 494 (908)
T PRK13107 426 LVYLTADEKYQAIIKDIKDCRE------RGQPVLVGTVSIEQSELLARLMVKEK--IPHEVLNA---KFHEREAEIVAQA 494 (908)
T ss_pred cEEeCHHHHHHHHHHHHHHHHH------cCCCEEEEeCcHHHHHHHHHHHHHCC--CCeEeccC---cccHHHHHHHHhC
Confidence 4456667788888877766544 37899999999999999999999999 99999999 9999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCC-------------------------------------CCEEEEcCCCCChhhHhhhc
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGE-------------------------------------IDLVICFDAQKSPIKMVQRL 213 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~-------------------------------------v~~VI~~d~p~s~~~yiQr~ 213 (395)
|+.|. |+||||+++||+||.= -=+||--..+.|..-=-|-.
T Consensus 495 g~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLr 572 (908)
T PRK13107 495 GRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLR 572 (908)
T ss_pred CCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhh
Confidence 99999 9999999999999861 22788888999999999999
Q ss_pred ccccccc-CceEEEEEeCCch
Q psy4150 214 GRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 214 GRagR~~-~g~~i~l~~~~~e 233 (395)
||+||.| +|...+|++-+++
T Consensus 573 GRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 573 GRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred cccccCCCCCceeEEEEeCcH
Confidence 9999998 6777777666554
No 96
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.27 E-value=5.7e-11 Score=129.79 Aligned_cols=109 Identities=25% Similarity=0.379 Sum_probs=101.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
++++-.-+|..++.+.++..|++.-|..++.+.|| .|+..+-..++.+|-+|+++|||||.+.+-|||||++|.+|.
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHG---QM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII 879 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHG---QMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII 879 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeec---CCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE
Confidence 69999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCCCC-ChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 200 FDAQK-SPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 200 ~d~p~-s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
-++.. ..+++.|-.||+||.. .+.+|+++-+.
T Consensus 880 e~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 880 ERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99887 6889999999999995 66677665543
No 97
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.26 E-value=1.4e-11 Score=133.04 Aligned_cols=131 Identities=19% Similarity=0.312 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcc----cC-----C-------CCc-------------ee
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKP----LE-----P-------MVK-------------AS 150 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~----~~-----~-------~~~-------------~~ 150 (395)
......++...... ++++||||++++.+...+..|.. .. + .+. -.
T Consensus 239 ~~~~~~~v~~~~~~------~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~ 312 (766)
T COG1204 239 DNLALELVLESLAE------GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAEL 312 (766)
T ss_pred hHHHHHHHHHHHhc------CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHH
Confidence 34555555555543 78999999999999999998872 10 0 011 01
Q ss_pred EEec---cCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE----EcC-----CCCChhhHhhhcccccc
Q psy4150 151 MFVG---QSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI----CFD-----AQKSPIKMVQRLGRTGR 218 (395)
Q Consensus 151 ~lhg---~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI----~~d-----~p~s~~~yiQr~GRagR 218 (395)
+.+| ||.+++...|..+.+.|+.|.++|||||+.+++|+|+|.-.+|| -|| .+-++.+++|+.|||||
T Consensus 313 v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 313 VLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred HHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 1112 45599999999999999999999999999999999999766666 466 45578999999999999
Q ss_pred cc---CceEEEEEeCCchhhH
Q psy4150 219 KR---NGRCVILLTQGREAHN 236 (395)
Q Consensus 219 ~~---~g~~i~l~~~~~e~~~ 236 (395)
.| -|..+++.+...+...
T Consensus 393 Pg~d~~G~~~i~~~~~~~~~~ 413 (766)
T COG1204 393 PGYDDYGEAIILATSHDELEY 413 (766)
T ss_pred CCcCCCCcEEEEecCccchhH
Confidence 96 4666666645444433
No 98
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.26 E-value=1.9e-11 Score=133.61 Aligned_cols=130 Identities=25% Similarity=0.376 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHH----HHHcccCCC--CceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIF----DVLKPLEPM--VKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~----~~L~~~~~~--~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+...+..++.....+ +-++|+|+.++..++.++ ..+...++. ..+...+| ++...+|..+...|
T Consensus 290 s~~~~~~~~~~~~~~~------~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~---~~~~~er~~ie~~~ 360 (851)
T COG1205 290 SALAELATLAALLVRN------GIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRA---GLHREERRRIEAEF 360 (851)
T ss_pred chHHHHHHHHHHHHHc------CceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccc---cCCHHHHHHHHHHH
Confidence 5666677777666554 789999999999999997 333333311 23344445 99999999999999
Q ss_pred hcCCccEEEEcCccccCCCCCCCCEEEEcCCCC-ChhhHhhhccccccccCceEEEEEeCCchhhH
Q psy4150 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPIKMVQRLGRTGRKRNGRCVILLTQGREAHN 236 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~ 236 (395)
+.|++.++++|+.++-||||++++.||.+..|. +..+++||.||+||.+.+...+++...+..+.
T Consensus 361 ~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~ 426 (851)
T COG1205 361 KEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDS 426 (851)
T ss_pred hcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccch
Confidence 999999999999999999999999999999999 89999999999999985555444444444333
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.25 E-value=4.1e-11 Score=134.19 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=87.3
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC----CC---CceeEEeccCCCCCHHHHHHHHHHHhcCCc-cEEEEcCccccCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE----PM---VKASMFVGQSSGVTQQEQKEIMKKFRAGEF-NTLIATSVGEEGLD 190 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~----~~---~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~-~vLVaT~v~~~GlD 190 (395)
..+++||||.++.+|+.+++.|.+.. +. ..+..+|| +.+ ++..++++|+++.. .|||+++++.+|+|
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg---~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~D 771 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITG---SID--KPDQLIRRFKNERLPNIVVTVDLLTTGID 771 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeC---Ccc--chHHHHHHHhCCCCCeEEEEecccccCCC
Confidence 45899999999999999999877531 11 24556888 654 46789999999987 68999999999999
Q ss_pred CCCCCEEEEcCCCCChhhHhhhccccccccC--ceEEEEEe
Q psy4150 191 IGEIDLVICFDAQKSPIKMVQRLGRTGRKRN--GRCVILLT 229 (395)
Q Consensus 191 ip~v~~VI~~d~p~s~~~yiQr~GRagR~~~--g~~i~l~~ 229 (395)
+|.|.+||.++++.|...|+|++||+.|... |+-..++.
T Consensus 772 vP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 772 VPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred cccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 9999999999999999999999999999843 45444443
No 100
>KOG4150|consensus
Probab=99.22 E-value=2.4e-11 Score=122.82 Aligned_cols=172 Identities=19% Similarity=0.288 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHH----HcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDV----LKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~----L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
+......++.+...+ +-|+|.||.+++.|+.+-.. |.+.+|+ -+..+.++.|+...++|.++..++-.|
T Consensus 510 ~i~E~s~~~~~~i~~------~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~-LV~~i~SYRGGY~A~DRRKIE~~~F~G 582 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQH------GLRCIAFCPSRKLCELVLCLTREILAETAPH-LVEAITSYRGGYIAEDRRKIESDLFGG 582 (1034)
T ss_pred HHHHHHHHHHHHHHc------CCcEEEeccHHHHHHHHHHHHHHHHHHhhHH-HHHHHHhhcCccchhhHHHHHHHhhCC
Confidence 555556677776665 68999999999999977654 4455652 334445555699999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchhhHHHHHHHHhHHHHHHHHc
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREAHNFQTSMQTCKSYVEKIIN 253 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~i~ 253 (395)
...-+|+|+.++-||||++.+.|+.+++|.|...+.|..|||||.. +.-+++++.....+..| ......+++
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y-------~~HP~~l~~ 655 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYY-------MSHPDKLFG 655 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHh-------hcCcHHHhC
Confidence 9999999999999999999999999999999999999999999985 44455555555444444 244455554
Q ss_pred ccchhhhhcccCCCCCCCCcchhhhhhcccc
Q psy4150 254 NKSIYANLAKNGPRMIPAHVTPRIKCLHIVV 284 (395)
Q Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 284 (395)
.+..-..+...+.-.+..|+.+...++.+..
T Consensus 656 ~pN~EL~LD~~N~~iL~~HlQCAA~ELPIN~ 686 (1034)
T KOG4150|consen 656 SPNEELHLDSQNKHVLMQHLQCAALELPINL 686 (1034)
T ss_pred CCcceeEEecccHHHHHHHHhHHhhcCcccc
Confidence 4433223333444445566666666666654
No 101
>KOG0353|consensus
Probab=99.15 E-value=7.3e-11 Score=114.52 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=84.8
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
.+...||||-+++.++.++..|+.+| +.+..+|. .|.+.++.-+-+.+-.|+++|+|+|-..+.|||-|+|.+||
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~g--i~a~~yha---~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi 390 (695)
T KOG0353|consen 316 AGQSGIIYCFSQKDCEKVAKALKNHG--IHAGAYHA---NLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI 390 (695)
T ss_pred CCCcceEEEeccccHHHHHHHHHhcC--cccccccc---ccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE
Confidence 35678999999999999999999999 99999999 99999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhHhh
Q psy4150 199 CFDAQKSPIKMVQ 211 (395)
Q Consensus 199 ~~d~p~s~~~yiQ 211 (395)
+..+|+|.+.|.|
T Consensus 391 hhsl~ksienyyq 403 (695)
T KOG0353|consen 391 HHSLPKSIENYYQ 403 (695)
T ss_pred ecccchhHHHHHH
Confidence 9999999999999
No 102
>KOG0387|consensus
Probab=99.09 E-value=1.2e-09 Score=114.59 Aligned_cols=135 Identities=20% Similarity=0.237 Sum_probs=114.0
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHc-ccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK-PLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~-~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.+.|++.+..+|...+.. +.++|+|..++.+.+.|-.+|. ..+ +....+.| ..+...|..++++|.++
T Consensus 528 ~sGKm~vl~~ll~~W~kq------g~rvllFsqs~~mLdilE~fL~~~~~--ysylRmDG---tT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQ------GDRVLLFSQSRQMLDILESFLRRAKG--YSYLRMDG---TTPAALRQKLVDRFNED 596 (923)
T ss_pred hcchHHHHHHHHHHHhhC------CCEEEEehhHHHHHHHHHHHHHhcCC--ceEEEecC---CCccchhhHHHHhhcCC
Confidence 344777777777765543 6799999999999999999998 466 89999999 89999999999999987
Q ss_pred C-cc-EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC---ceEEEEEeCCchhhHHHHHH
Q psy4150 175 E-FN-TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN---GRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 175 ~-~~-vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~~~~~e~~~~~~~~ 241 (395)
+ +. .|++|.|++-|+++..++-||+||+.|||..-.|..-||.|.|+ -.+|-|++.++.++.+...+
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHH
Confidence 4 33 58999999999999999999999999999999999999999973 34566888888877655433
No 103
>KOG0392|consensus
Probab=99.08 E-value=9.3e-10 Score=119.39 Aligned_cols=157 Identities=19% Similarity=0.288 Sum_probs=123.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhcc--------CCCccEEEEcCcHHHHHHHHHHHcc-cCCCCceeEEeccCCCCCHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEK--------GETTKVIIFANYRVVVAEIFDVLKP-LEPMVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~--------~~~~r~iVF~~t~~~ae~l~~~L~~-~~~~~~~~~lhg~~~~~~~~~R~ 165 (395)
...||+.+|.++|.+.--..... -.+.|+||||+-+.+++.+.+-|.+ +-|.+....+.| ..++..|.
T Consensus 1307 ~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDG---SVpp~~R~ 1383 (1549)
T KOG0392|consen 1307 QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDG---SVPPGDRQ 1383 (1549)
T ss_pred hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecC---CCCcHHHH
Confidence 35689999999998752210000 1468999999999999999886654 554455556778 99999999
Q ss_pred HHHHHHhcC-CccEE-EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceE---EEEEeCCchhhHHHHH
Q psy4150 166 EIMKKFRAG-EFNTL-IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRC---VILLTQGREAHNFQTS 240 (395)
Q Consensus 166 ~~l~~Fk~g-~~~vL-VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~---i~l~~~~~e~~~~~~~ 240 (395)
++.++|.++ .++|| ++|-|++-|+|+.+++.||.++-.|||..-+|.+.||-|-|+.++ +-+++.++-++.++-.
T Consensus 1384 kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgL 1463 (1549)
T KOG0392|consen 1384 KIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGL 1463 (1549)
T ss_pred HHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhH
Confidence 999999999 89986 788999999999999999999999999999999999999987665 4578899988888766
Q ss_pred HHHhHHHHHHHHcc
Q psy4150 241 MQTCKSYVEKIINN 254 (395)
Q Consensus 241 ~~~~~~~i~~~i~~ 254 (395)
++-...-.+..++.
T Consensus 1464 QkFKmnvAntvInq 1477 (1549)
T KOG0392|consen 1464 QKFKMNVANTVINQ 1477 (1549)
T ss_pred HHHhhHHHHHHHhc
Confidence 63333333344443
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.05 E-value=6.1e-10 Score=120.89 Aligned_cols=104 Identities=28% Similarity=0.377 Sum_probs=88.1
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHh----cCCccEEEEcCccccCCCCCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFR----AGEFNTLIATSVGEEGLDIGE 193 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk----~g~~~vLVaT~v~~~GlDip~ 193 (395)
..+.+++|-|||+..|..++..|+..++ ++..+|| .+....|.+.++.++ .+...|+|||+|.+-|+|+.
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~--~v~LlHS---Rf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEKGP--KVLLLHS---RFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhcCC--CEEEEec---ccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 3479999999999999999999999985 8999999 999999988888655 46889999999999999995
Q ss_pred CCEEEEcCCCCChhhHhhhcccccccc---CceEEEEEe
Q psy4150 194 IDLVICFDAQKSPIKMVQRLGRTGRKR---NGRCVILLT 229 (395)
Q Consensus 194 v~~VI~~d~p~s~~~yiQr~GRagR~~---~g~~i~l~~ 229 (395)
++++|-==+| ..++|||.||++|.| .|.++++..
T Consensus 512 fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 512 FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred cCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEeec
Confidence 7877765444 889999999999998 344444433
No 105
>KOG0385|consensus
Probab=99.03 E-value=1.4e-09 Score=113.70 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=117.6
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
+..+.|+..|-.+|..+... ++|||||.+-..+.+-|.+++.-++ +..+.+.| .++-++|...++.|..
T Consensus 467 v~nSGKm~vLDkLL~~Lk~~------GhRVLIFSQmt~mLDILeDyc~~R~--y~ycRiDG---St~~eeR~~aI~~fn~ 535 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLKEQ------GHRVLIFSQMTRMLDILEDYCMLRG--YEYCRLDG---STSHEEREDAIEAFNA 535 (971)
T ss_pred HhcCcceehHHHHHHHHHhC------CCeEEEeHHHHHHHHHHHHHHHhcC--ceeEeecC---CCCcHHHHHHHHhcCC
Confidence 34556999999999887654 8999999999999999999999888 89999999 9999999999999987
Q ss_pred CC---ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC---ceEEEEEeCCchhhHHHH
Q psy4150 174 GE---FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN---GRCVILLTQGREAHNFQT 239 (395)
Q Consensus 174 g~---~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~~~~~e~~~~~~ 239 (395)
.. +-.|++|-+++-|||+..+++||.||..|||..-+|.+.||-|.|+ -.++-|+++.+.++.+..
T Consensus 536 ~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~Ive 607 (971)
T KOG0385|consen 536 PPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVE 607 (971)
T ss_pred CCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHH
Confidence 54 4468999999999999999999999999999999999999999873 445668888887766543
No 106
>KOG0384|consensus
Probab=99.00 E-value=7.8e-10 Score=120.22 Aligned_cols=130 Identities=21% Similarity=0.290 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC--
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG-- 174 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g-- 174 (395)
+.|+-.|-.||-.+. ..+.|||||.+-..+.+-|++||...+ +..-.|-| .+...-|...+..|...
T Consensus 682 SGKlVLLDKLL~rLk------~~GHrVLIFSQMVRmLDIL~eYL~~r~--ypfQRLDG---svrgelRq~AIDhFnap~S 750 (1373)
T KOG0384|consen 682 SGKLVLLDKLLPRLK------EGGHRVLIFSQMVRMLDILAEYLSLRG--YPFQRLDG---SVRGELRQQAIDHFNAPDS 750 (1373)
T ss_pred cCcEEeHHHHHHHHh------cCCceEEEhHHHHHHHHHHHHHHHHcC--CcceeccC---CcchHHHHHHHHhccCCCC
Confidence 334444445554443 358999999999999999999999999 88899999 99999999999999873
Q ss_pred -CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCc---eEEEEEeCCchhhHH
Q psy4150 175 -EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNG---RCVILLTQGREAHNF 237 (395)
Q Consensus 175 -~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g---~~i~l~~~~~e~~~~ 237 (395)
.+-.|+||-+++-|||+..++.||+||..|||..-+|.+.||-|.|+. .+|-|++.++.+..+
T Consensus 751 ddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 751 DDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred CceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHH
Confidence 577899999999999999999999999999999999999999999854 456688888766544
No 107
>KOG0951|consensus
Probab=98.99 E-value=2e-09 Score=117.22 Aligned_cols=153 Identities=20% Similarity=0.354 Sum_probs=104.1
Q ss_pred cccccccceeeeccccH-----HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc-------------C
Q psy4150 83 KLDINIMSSEYAWSHLK-----FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL-------------E 144 (395)
Q Consensus 83 ~~~~~~~~~~~~~~~~K-----~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~-------------~ 144 (395)
.+...++.|.|+....| ++...+...+-. .+..+.++|||||.+|+.+-..+..++.. +
T Consensus 507 syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKV---m~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~ 583 (1674)
T KOG0951|consen 507 SYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKV---LEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMRED 583 (1674)
T ss_pred ccCcCCccceEeccccCCchHHHHHHHHHHHHHH---HHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcc
Confidence 34444566777654432 222222222211 12244589999999998877777666511 1
Q ss_pred ----------------CC------CceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE----
Q psy4150 145 ----------------PM------VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI---- 198 (395)
Q Consensus 145 ----------------~~------~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI---- 198 (395)
+. +.... ||+||+..+|..+.+-|+.|.++|||+|-.+++|+++|.-.++|
T Consensus 584 s~s~eilrtea~~~kn~dLkdLLpygfaI---HhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtq 660 (1674)
T KOG0951|consen 584 SASREILRTEAGQAKNPDLKDLLPYGFAI---HHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQ 660 (1674)
T ss_pred cchhhhhhhhhhcccChhHHHHhhcccee---eccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCcc
Confidence 11 22333 33499999999999999999999999999999999999877777
Q ss_pred EcCCCC------ChhhHhhhcccccccc--CceEEEEEeCCchhhHHHHHH
Q psy4150 199 CFDAQK------SPIKMVQRLGRTGRKR--NGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 199 ~~d~p~------s~~~yiQr~GRagR~~--~g~~i~l~~~~~e~~~~~~~~ 241 (395)
.||+-+ ++.+.+|+.|||||.+ ..+-.++++...+...+...+
T Consensus 661 vy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~m 711 (1674)
T KOG0951|consen 661 VYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLM 711 (1674)
T ss_pred ccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhh
Confidence 466543 7899999999999995 223345566666666665544
No 108
>KOG0952|consensus
Probab=98.91 E-value=6.5e-09 Score=111.81 Aligned_cols=121 Identities=19% Similarity=0.342 Sum_probs=91.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEec----------------cCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVG----------------QSSGVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg----------------~~~~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
+.+++|||.++..+-..++.|.+.+- +....++++ ||++|..++|.-+.+.|+.|.++||+|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 68999999999999999988875420 012222222 445999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEE-----cCCCC------ChhhHhhhcccccccc--CceEEEEEeCCchhhHHHHHH
Q psy4150 182 TSVGEEGLDIGEIDLVIC-----FDAQK------SPIKMVQRLGRTGRKR--NGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 182 T~v~~~GlDip~v~~VI~-----~d~p~------s~~~yiQr~GRagR~~--~g~~i~l~~~~~e~~~~~~~~ 241 (395)
|..+++|+++|+ .+||+ ||... +.-+.+|-.|||||.. +.++.++++..+-.+.|..++
T Consensus 429 TaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 429 TATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred cceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 999999999995 45554 44433 5677899999999993 445555667766666666555
No 109
>KOG0950|consensus
Probab=98.90 E-value=2.1e-09 Score=114.76 Aligned_cols=110 Identities=20% Similarity=0.343 Sum_probs=87.8
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC------------------------------------CCceeEEeccCCCCCHHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP------------------------------------MVKASMFVGQSSGVTQQE 163 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~------------------------------------~~~~~~lhg~~~~~~~~~ 163 (395)
+.++||||++++.|+.++..+...-| .+.+.+.|. +++..+
T Consensus 460 ~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHha---GLT~eE 536 (1008)
T KOG0950|consen 460 GSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHA---GLTSEE 536 (1008)
T ss_pred CCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceeccc---ccccch
Confidence 57799999999999988865432111 134455555 999999
Q ss_pred HHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCC----CChhhHhhhcccccccc---CceEEEEEeCCc
Q psy4150 164 QKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQ----KSPIKMVQRLGRTGRKR---NGRCVILLTQGR 232 (395)
Q Consensus 164 R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p----~s~~~yiQr~GRagR~~---~g~~i~l~~~~~ 232 (395)
|..+...|+.|.+.|++||+.++.|+++|...++|-.-.- .+.-.|.|++|||||.| -|.+++++...+
T Consensus 537 R~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 537 REIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred HHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 9999999999999999999999999999999998865432 36789999999999997 466676665544
No 110
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.89 E-value=4.6e-09 Score=113.82 Aligned_cols=111 Identities=23% Similarity=0.312 Sum_probs=97.7
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcc--cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKP--LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEID 195 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~--~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~ 195 (395)
...+.+|||.+-...++.+++.|.+ .++.+.+..+|| .++..++.++++--..|.-+|++|||+++.+|.||+|.
T Consensus 257 ~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~---~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr 333 (845)
T COG1643 257 EGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYG---ALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR 333 (845)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccc---cCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE
Confidence 3478899999999999999999987 335588999999 99999999998887777777999999999999999999
Q ss_pred EEEEcCCC------------------CChhhHhhhccccccccCceEEEEEeCC
Q psy4150 196 LVICFDAQ------------------KSPIKMVQRLGRTGRKRNGRCVILLTQG 231 (395)
Q Consensus 196 ~VI~~d~p------------------~s~~~yiQr~GRagR~~~g~~i~l~~~~ 231 (395)
+||.-+.- -|-.+..||.|||||-+.|.||-+++++
T Consensus 334 ~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~ 387 (845)
T COG1643 334 YVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEE 387 (845)
T ss_pred EEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHH
Confidence 99975543 2678899999999999999999998863
No 111
>KOG0391|consensus
Probab=98.87 E-value=2.5e-08 Score=107.81 Aligned_cols=133 Identities=19% Similarity=0.316 Sum_probs=111.9
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
+...|+..|.=||.++... +.|+|||+.-.++.+-|..+|.-+| +....|.| ....++|...++.|...
T Consensus 1257 yDcGKLQtLAiLLqQLk~e------ghRvLIfTQMtkmLDVLeqFLnyHg--ylY~RLDg---~t~vEqRQaLmerFNaD 1325 (1958)
T KOG0391|consen 1257 YDCGKLQTLAILLQQLKSE------GHRVLIFTQMTKMLDVLEQFLNYHG--YLYVRLDG---NTSVEQRQALMERFNAD 1325 (1958)
T ss_pred cccchHHHHHHHHHHHHhc------CceEEehhHHHHHHHHHHHHHhhcc--eEEEEecC---CccHHHHHHHHHHhcCC
Confidence 4556999998887776543 7999999999999999999999999 88888889 88999999999999886
Q ss_pred C--ccEEEEcCccccCCCCCCCCEEEEcCCCCChh------hHhhhccccccccCceEEEEEeCCchhhHHHHHH
Q psy4150 175 E--FNTLIATSVGEEGLDIGEIDLVICFDAQKSPI------KMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 175 ~--~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~------~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~ 241 (395)
. +..+++|-.++.|||+.+++.||.||..||+. +..||||+| ++-.+|-|+++.+.+.++.+.-
T Consensus 1326 ~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqt---RDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1326 RRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQT---RDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCc---cceEEEEeeccchHHHHHHhhh
Confidence 3 56789999999999999999999999999874 344455554 6788899999988887775443
No 112
>KOG0388|consensus
Probab=98.86 E-value=1.1e-08 Score=106.14 Aligned_cols=148 Identities=20% Similarity=0.304 Sum_probs=125.5
Q ss_pred eeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 93 YAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 93 ~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
|...+.|+..|-++|..+-. .+.|+|+|++-.++.+.+.++|...+ +....+.| ......|..++++|.
T Consensus 1023 FitdSgKL~~LDeLL~kLka------egHRvL~yfQMTkM~dl~EdYl~yr~--Y~ylRLDG---Ssk~~dRrd~vrDwQ 1091 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLKA------EGHRVLMYFQMTKMIDLIEDYLVYRG--YTYLRLDG---SSKASDRRDVVRDWQ 1091 (1185)
T ss_pred hhccccceeeHHHHHHHhhc------CCceEEehhHHHHHHHHHHHHHHhhc--cceEEecC---cchhhHHHHHHhhcc
Confidence 34566789888888887643 48999999999999999999999998 88899999 888999999999999
Q ss_pred cCC-ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc---CceEEEEEeCCchhhHHHHHHHHhHHHH
Q psy4150 173 AGE-FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR---NGRCVILLTQGREAHNFQTSMQTCKSYV 248 (395)
Q Consensus 173 ~g~-~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~e~~~~~~~~~~~~~~i 248 (395)
..+ +-.|++|-.++-||++..++.||.||..|+|..-.|.+.||.|-| +-.++-+++.++.++.+.... .....+
T Consensus 1092 ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA-~qK~~v 1170 (1185)
T KOG0388|consen 1092 ASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERA-NQKDEV 1170 (1185)
T ss_pred CCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHh-hhHHHH
Confidence 865 445899999999999999999999999999999999999998886 456777888888887776554 455666
Q ss_pred HHHH
Q psy4150 249 EKII 252 (395)
Q Consensus 249 ~~~i 252 (395)
++..
T Consensus 1171 Qq~V 1174 (1185)
T KOG0388|consen 1171 QQMV 1174 (1185)
T ss_pred HHHH
Confidence 6654
No 113
>KOG0922|consensus
Probab=98.83 E-value=1e-08 Score=106.19 Aligned_cols=133 Identities=19% Similarity=0.284 Sum_probs=106.5
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCC------ceeEEeccCCCCCHHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMV------KASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~------~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
..|-.+.+.+.+...++-|.. ++.+-+|||....+.++.+++.|.+..... .+..+|| .++.+++.+++.
T Consensus 235 ~~p~~dYv~a~~~tv~~Ih~~-E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~---aL~~e~Q~rvF~ 310 (674)
T KOG0922|consen 235 KEPTADYVDAALITVIQIHLT-EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG---ALPSEEQSRVFD 310 (674)
T ss_pred cCCchhhHHHHHHHHHHHHcc-CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc---cCCHHHhhcccc
Confidence 345555555555554443333 566789999999999999999998753111 3466889 999999999999
Q ss_pred HHhcCCccEEEEcCccccCCCCCCCCEEEEcCC------------------CCChhhHhhhccccccccCceEEEEEeCC
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIGEIDLVICFDA------------------QKSPIKMVQRLGRTGRKRNGRCVILLTQG 231 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~yiQr~GRagR~~~g~~i~l~~~~ 231 (395)
.-..|.-+|+++||+++..|.|+++.+||.-+. |-|-.+-.||.|||||.|.|+++-++++.
T Consensus 311 p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~ 390 (674)
T KOG0922|consen 311 PAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTES 390 (674)
T ss_pred CCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHH
Confidence 988899999999999999999999999996553 33778899999999999999999998864
Q ss_pred c
Q psy4150 232 R 232 (395)
Q Consensus 232 ~ 232 (395)
.
T Consensus 391 ~ 391 (674)
T KOG0922|consen 391 A 391 (674)
T ss_pred H
Confidence 3
No 114
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.82 E-value=4.6e-08 Score=106.42 Aligned_cols=217 Identities=21% Similarity=0.219 Sum_probs=135.4
Q ss_pred cchHHHHHHHHhCCCcchhhhcccc-Cccc-------cccccccCChhHHHHHHhhcccccc----cccceee-eccccH
Q psy4150 33 HSLASALENLVTYGLRSFYNNLVEV-SKED-------GSCPILGKDNDLQNLLQQLKPKLDI----NIMSSEY-AWSHLK 99 (395)
Q Consensus 33 ~~l~~~~~~L~~~g~r~~~~fsatl-~~~~-------~~~~~l~~~~~~~~~v~~~~~~~~~----~~~~~~~-~~~~~K 99 (395)
+.|.+.+..|.+++...++.|+.|. .... ....+++.++.-. ++..-....-. ......+ ...+||
T Consensus 193 ~~Lr~ll~~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~S~Wl~~daa~~-lf~~ak~Rvy~~~~~~~~~~e~~lEe~PK 271 (814)
T TIGR00596 193 KILRHLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSESPWLLLDAAQL-IFSYARQRVYYEGEGPNMKNEPVLEENPK 271 (814)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccccccCCcchhhHHHHH-HHHHHHHHHhccccccccccccCcccCCC
Confidence 4567888999999988888888754 2111 0112333332211 11111000000 0001122 248999
Q ss_pred HHHHHHHHHHHHHhhh---ccCCCccEEEEcCcHHHHHHHHHHHcccCC---CCcee------EEe--cc----------
Q psy4150 100 FIRLREILESHFRLHA---EKGETTKVIIFANYRVVVAEIFDVLKPLEP---MVKAS------MFV--GQ---------- 155 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~---~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~---~~~~~------~lh--g~---------- 155 (395)
...|.++|.+...... ...+.+++||||+.+++|..|.++|...+- ..+.. ++. |+
T Consensus 272 w~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~~~~~~~~fm~~~l~~y~~~~~~~~k~~~~~~~ 351 (814)
T TIGR00596 272 WEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSNKKRGSRAFLLNKLRWYRKWREETSKLAKEVQS 351 (814)
T ss_pred HHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhccccccHHHHHHHHHHHHHhhhhhhhhhhHhhhh
Confidence 9999999988665411 113567899999999999999999955110 00000 000 10
Q ss_pred ---------------------------CCCCCHHHHHHHHHHHhcCCcc---------EE--------------------
Q psy4150 156 ---------------------------SSGVTQQEQKEIMKKFRAGEFN---------TL-------------------- 179 (395)
Q Consensus 156 ---------------------------~~~~~~~~R~~~l~~Fk~g~~~---------vL-------------------- 179 (395)
..++++. .+..|+.|..+ +|
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~----~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 427 (814)
T TIGR00596 352 QDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEV----AVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAAND 427 (814)
T ss_pred ccccccccccccccccccccccccccccccchhH----HHhhhcccccccccccchhhhhhhhhhhhccccccccccccc
Confidence 0022222 26677766554 34
Q ss_pred ---EEcCccccCCCCCC----------------------C----------CEEEEcCCCCChhhHhh--hccccccccCc
Q psy4150 180 ---IATSVGEEGLDIGE----------------------I----------DLVICFDAQKSPIKMVQ--RLGRTGRKRNG 222 (395)
Q Consensus 180 ---VaT~v~~~GlDip~----------------------v----------~~VI~~d~p~s~~~yiQ--r~GRagR~~~g 222 (395)
|+|++.++|+|++. + ++||.|++..+...-+| |.||+||. +
T Consensus 428 ~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~--~ 505 (814)
T TIGR00596 428 SKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRP--L 505 (814)
T ss_pred cccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCC--c
Confidence 77999999999998 6 89999999999999999 99999887 6
Q ss_pred eEEEEEeCC-chhhHHHHHHHHhHHHHHHHHcccc
Q psy4150 223 RCVILLTQG-REAHNFQTSMQTCKSYVEKIINNKS 256 (395)
Q Consensus 223 ~~i~l~~~~-~e~~~~~~~~~~~~~~i~~~i~~~~ 256 (395)
.+|++++.+ .|+..|....++..+..+++|....
T Consensus 506 rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIreka 540 (814)
T TIGR00596 506 RVYFLYYGGSIEEQRYLTSLRREKDAFTKLIREKA 540 (814)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777766655 4566777777777777777775544
No 115
>KOG0389|consensus
Probab=98.81 E-value=5.3e-08 Score=102.34 Aligned_cols=136 Identities=19% Similarity=0.246 Sum_probs=115.9
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
..+.|...|..+|...... +.|||||.+...+.+-|.-+|.-.+ ++...|-| ...-..|+.++.+|...
T Consensus 758 mdSgK~r~L~~LLp~~k~~------G~RVLiFSQFTqmLDILE~~L~~l~--~~ylRLDG---sTqV~~RQ~lId~Fn~d 826 (941)
T KOG0389|consen 758 MDSGKCRKLKELLPKIKKK------GDRVLIFSQFTQMLDILEVVLDTLG--YKYLRLDG---STQVNDRQDLIDEFNTD 826 (941)
T ss_pred hhhhhHhHHHHHHHHHhhc------CCEEEEeeHHHHHHHHHHHHHHhcC--ceEEeecC---CccchHHHHHHHhhccC
Confidence 3456999999999887654 6999999999999999999999999 88999999 88899999999999886
Q ss_pred C-c-cEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc---CceEEEEEeCCchhhHHHHHH
Q psy4150 175 E-F-NTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR---NGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 175 ~-~-~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~e~~~~~~~~ 241 (395)
+ + -+|++|-+++-||++..+++||.||...+|-.-.|.-.||.|.| .-.++-|++.++.++.+..+-
T Consensus 827 ~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA 898 (941)
T KOG0389|consen 827 KDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLA 898 (941)
T ss_pred CceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHH
Confidence 3 3 35899999999999999999999999999888888666666665 556778999988887665444
No 116
>KOG1002|consensus
Probab=98.71 E-value=1.2e-07 Score=95.31 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=122.7
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC-
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG- 174 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g- 174 (395)
.+.|+++|.+-|.-.... ...-+.|||.+...+.+.+.=.|.+.| +.++-+.| +|++..|...++.|++.
T Consensus 618 sSTKIEAL~EEl~~l~~r----d~t~KsIVFSQFTSmLDLi~~rL~kaG--fscVkL~G---sMs~~ardatik~F~nd~ 688 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRER----DRTAKSIVFSQFTSMLDLIEWRLGKAG--FSCVKLVG---SMSPAARDATIKYFKNDI 688 (791)
T ss_pred chhHHHHHHHHHHHHHHc----ccchhhhhHHHHHHHHHHHHHHhhccC--ceEEEecc---CCChHHHHHHHHHhccCC
Confidence 455777777766554443 445789999999999999999999999 99999999 99999999999999987
Q ss_pred CccE-EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc---cCceEEEEEeCCchhhHHHHHHHHhHHHHHH
Q psy4150 175 EFNT-LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK---RNGRCVILLTQGREAHNFQTSMQTCKSYVEK 250 (395)
Q Consensus 175 ~~~v-LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~---~~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~ 250 (395)
.+.| ||+-..++..+++..++.|+..|+-|++.--+|...|..|. ++-+++.|+.+...+..+..++++....+..
T Consensus 689 ~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~miha 768 (791)
T KOG1002|consen 689 DCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHA 768 (791)
T ss_pred CeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhh
Confidence 6776 57779999999999999999999999999888855555554 4677888999998888888777555555555
Q ss_pred HHcc
Q psy4150 251 IINN 254 (395)
Q Consensus 251 ~i~~ 254 (395)
.++.
T Consensus 769 Ti~q 772 (791)
T KOG1002|consen 769 TIGQ 772 (791)
T ss_pred hcCC
Confidence 5544
No 117
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.69 E-value=1.6e-07 Score=100.93 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=100.5
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..|.....|+.++.+-+.+... .+.+|||.|.|...++.|+..|.+.| ++..+|+. . +.++...+=.
T Consensus 403 ~iy~t~~~K~~Aii~ei~~~~~------~gqPVLVgT~SIe~SE~ls~~L~~~g--i~h~vLNA---k--~~e~EA~IIa 469 (925)
T PRK12903 403 SIFGTKHAKWKAVVKEVKRVHK------KGQPILIGTAQVEDSETLHELLLEAN--IPHTVLNA---K--QNAREAEIIA 469 (925)
T ss_pred cEEEcHHHHHHHHHHHHHHHHh------cCCCEEEEeCcHHHHHHHHHHHHHCC--CCceeecc---c--chhhHHHHHH
Confidence 4556667788888777766543 37899999999999999999999999 88888887 3 2233333322
Q ss_pred HhcC-CccEEEEcCccccCCCCCCCC--------EEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 171 FRAG-EFNTLIATSVGEEGLDIGEID--------LVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 171 Fk~g-~~~vLVaT~v~~~GlDip~v~--------~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
..| .-.|.|||+.++||.||.--. +||....|.|..---|-.||+||.| +|.+.+|++-+++
T Consensus 470 -~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 470 -KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred -hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 566 567899999999999996332 8999999999998999999999998 6776666665544
No 118
>KOG0923|consensus
Probab=98.68 E-value=3.9e-08 Score=101.58 Aligned_cols=138 Identities=20% Similarity=0.214 Sum_probs=105.6
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcc-------cCCCCceeEEeccCCCCCHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKP-------LEPMVKASMFVGQSSGVTQQE 163 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~-------~~~~~~~~~lhg~~~~~~~~~ 163 (395)
..|+...|-.+.|...+...++-|.. .+.+-+|||..-.+..+...+.|.+ .++.+-+..+|+ ++++..
T Consensus 445 di~Yt~~PEAdYldAai~tVlqIH~t-qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYa---NLPsel 520 (902)
T KOG0923|consen 445 DIFYTKAPEADYLDAAIVTVLQIHLT-QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYA---NLPSEL 520 (902)
T ss_pred eeecccCCchhHHHHHHhhheeeEec-cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccc---cCChHH
Confidence 34444555555555555444333222 4568899999887776665555543 344566777888 999999
Q ss_pred HHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCC------------------CChhhHhhhccccccccCceEE
Q psy4150 164 QKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQ------------------KSPIKMVQRLGRTGRKRNGRCV 225 (395)
Q Consensus 164 R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p------------------~s~~~yiQr~GRagR~~~g~~i 225 (395)
+..+++.--.|.-+|++|||+++..|.|++|.+||.-++. -|..+-.||.|||||-|.|+|+
T Consensus 521 QakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCf 600 (902)
T KOG0923|consen 521 QAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCF 600 (902)
T ss_pred HHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999976543 3677889999999999999999
Q ss_pred EEEeCCc
Q psy4150 226 ILLTQGR 232 (395)
Q Consensus 226 ~l~~~~~ 232 (395)
-+++...
T Consensus 601 RLYt~~a 607 (902)
T KOG0923|consen 601 RLYTAWA 607 (902)
T ss_pred Eeechhh
Confidence 9988543
No 119
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.68 E-value=2.8e-07 Score=101.58 Aligned_cols=145 Identities=25% Similarity=0.363 Sum_probs=119.2
Q ss_pred cHHHHHHHHH-HHHHHhhhccCCCc--cEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 98 LKFIRLREIL-ESHFRLHAEKGETT--KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 98 ~K~~~L~~lL-~~~~~~~~~~~~~~--r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.|+..+.++| ...... +. ++|||++...+.+-+..+|...+ +....++| .++...|...+..|.++
T Consensus 692 ~k~~~l~~ll~~~~~~~------~~~~kvlifsq~t~~l~il~~~l~~~~--~~~~~ldG---~~~~~~r~~~i~~f~~~ 760 (866)
T COG0553 692 GKLQALDELLLDKLLEE------GHYHKVLIFSQFTPVLDLLEDYLKALG--IKYVRLDG---STPAKRRQELIDRFNAD 760 (866)
T ss_pred hHHHHHHHHHHHHHHhh------cccccEEEEeCcHHHHHHHHHHHHhcC--CcEEEEeC---CCChhhHHHHHHHhhcC
Confidence 6888888888 455443 45 99999999999999999999998 88999999 89999999999999996
Q ss_pred --CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc---CceEEEEEeCCchhhHHHHHHHHhHHHHH
Q psy4150 175 --EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR---NGRCVILLTQGREAHNFQTSMQTCKSYVE 249 (395)
Q Consensus 175 --~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~e~~~~~~~~~~~~~~i~ 249 (395)
..-+|++|.+++.|+++...++||.||+.|++....|.+.|+.|.| .-.++-+++.++-+..+............
T Consensus 761 ~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~ 840 (866)
T COG0553 761 EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLD 840 (866)
T ss_pred CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHH
Confidence 4445788889999999999999999999999999999999888875 45566788888877666665534433444
Q ss_pred HHHc
Q psy4150 250 KIIN 253 (395)
Q Consensus 250 ~~i~ 253 (395)
.++.
T Consensus 841 ~~~~ 844 (866)
T COG0553 841 SLID 844 (866)
T ss_pred HHhh
Confidence 4443
No 120
>KOG0390|consensus
Probab=98.65 E-value=3.1e-07 Score=98.17 Aligned_cols=130 Identities=20% Similarity=0.259 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC--
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE-- 175 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~-- 175 (395)
.|+..|..++..... .....+.+-.|.+.+.+.+....+-.| ..+..+|| .|+..+|..+++.|.+..
T Consensus 578 ~kl~~L~~ll~~~~e-----k~~~~~v~Isny~~tldl~e~~~~~~g--~~~~rLdG---~~~~~qRq~~vd~FN~p~~~ 647 (776)
T KOG0390|consen 578 GKLLVLVFLLEVIRE-----KLLVKSVLISNYTQTLDLFEQLCRWRG--YEVLRLDG---KTSIKQRQKLVDTFNDPESP 647 (776)
T ss_pred hHHHHHHHHHHHHhh-----hcceEEEEeccHHHHHHHHHHHHhhcC--ceEEEEcC---CCchHHHHHHHHhccCCCCC
Confidence 355555555533322 123344455566666666666666667 99999999 999999999999998853
Q ss_pred -ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCce---EEEEEeCCchhhHH
Q psy4150 176 -FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGR---CVILLTQGREAHNF 237 (395)
Q Consensus 176 -~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~---~i~l~~~~~e~~~~ 237 (395)
.-.|.+|-++++||++-+++.||.||++|||+.-.|.++|+.|.|+-+ +|-|++.++-++.+
T Consensus 648 ~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~ 713 (776)
T KOG0390|consen 648 SFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKI 713 (776)
T ss_pred ceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHH
Confidence 335788899999999999999999999999999999999999998544 34567777766543
No 121
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2.6e-07 Score=98.95 Aligned_cols=121 Identities=22% Similarity=0.313 Sum_probs=85.0
Q ss_pred HHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC--------
Q psy4150 133 VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-------- 204 (395)
Q Consensus 133 ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-------- 204 (395)
++.+.+.|....|..++..+.+.+ ..+...-...+..|..|+++|||+|.+++.|.|+|+|.+|...|...
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dt-t~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfR 571 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDT-TRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFR 571 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEcccc-ccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcc
Confidence 677777777777777777777722 12233456789999999999999999999999999999998887664
Q ss_pred ----ChhhHhhhccccccc-cCceEEEEEeCCchhhHHHHHHHH-hHHHHHHHHccc
Q psy4150 205 ----SPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNFQTSMQT-CKSYVEKIINNK 255 (395)
Q Consensus 205 ----s~~~yiQr~GRagR~-~~g~~i~l~~~~~e~~~~~~~~~~-~~~~i~~~i~~~ 255 (395)
....+.|-.|||||. ..|.+++-...++ ...+...... .....++.+..+
T Consensus 572 A~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~-hp~i~~~~~~dy~~F~~~El~~R 627 (730)
T COG1198 572 ASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD-HPAIQALKRGDYEAFYEQELAER 627 (730)
T ss_pred hHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC-cHHHHHHHhcCHHHHHHHHHHHH
Confidence 344588999999999 4777765544444 3334333333 333445555443
No 122
>KOG0953|consensus
Probab=98.57 E-value=5.7e-07 Score=91.67 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=99.8
Q ss_pred cccCChhHHHHHHhhcccccccccceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC
Q psy4150 66 ILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP 145 (395)
Q Consensus 66 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~ 145 (395)
++..+|..+.++..+-........+..|.--. .+.....++..+ .+ -.++.-++.| +++.+-.+...+.+.|.
T Consensus 309 HLCGepsvldlV~~i~k~TGd~vev~~YeRl~-pL~v~~~~~~sl-~n---lk~GDCvV~F--Skk~I~~~k~kIE~~g~ 381 (700)
T KOG0953|consen 309 HLCGEPSVLDLVRKILKMTGDDVEVREYERLS-PLVVEETALGSL-SN---LKPGDCVVAF--SKKDIFTVKKKIEKAGN 381 (700)
T ss_pred hccCCchHHHHHHHHHhhcCCeeEEEeecccC-cceehhhhhhhh-cc---CCCCCeEEEe--ehhhHHHHHHHHHHhcC
Confidence 56677888888876654443333233332111 111111222221 11 1234444444 66778888888888773
Q ss_pred CCceeEEeccCCCCCHHHHHHHHHHHhc--CCccEEEEcCccccCCCCCCCCEEEEcCCCC---------ChhhHhhhcc
Q psy4150 146 MVKASMFVGQSSGVTQQEQKEIMKKFRA--GEFNTLIATSVGEEGLDIGEIDLVICFDAQK---------SPIKMVQRLG 214 (395)
Q Consensus 146 ~~~~~~lhg~~~~~~~~~R~~~l~~Fk~--g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~---------s~~~yiQr~G 214 (395)
.++.++.| +++++.|.+--..|.+ ++++||||||+.+.|+|+ +++.||.|++-+ +..+-.|-.|
T Consensus 382 -~k~aVIYG---sLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAG 456 (700)
T KOG0953|consen 382 -HKCAVIYG---SLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAG 456 (700)
T ss_pred -cceEEEec---CCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhh
Confidence 45999999 9999999999999988 899999999999999999 699999988753 6778899999
Q ss_pred cccccc
Q psy4150 215 RTGRKR 220 (395)
Q Consensus 215 RagR~~ 220 (395)
||||.|
T Consensus 457 RAGRf~ 462 (700)
T KOG0953|consen 457 RAGRFG 462 (700)
T ss_pred cccccc
Confidence 999996
No 123
>KOG0920|consensus
Probab=98.55 E-value=1.3e-07 Score=102.57 Aligned_cols=128 Identities=22% Similarity=0.322 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-----CCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-----MVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-----~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
..+.+.+++...... ...+.+|||-+....+..+.+.|....+ .+-+..+|+ .|+..++..++..--.
T Consensus 396 d~~Li~~li~~I~~~----~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs---~~~s~eQ~~VF~~pp~ 468 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDER----EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHS---SIPSEEQQAVFKRPPK 468 (924)
T ss_pred cHHHHHHHHHhcccC----CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccc---cCChHHHHHhcCCCCC
Confidence 344445555444332 5678999999999999999999976443 244566677 9999999999999999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEc--------CCCC----------ChhhHhhhccccccccCceEEEEEeCCch
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICF--------DAQK----------SPIKMVQRLGRTGRKRNGRCVILLTQGRE 233 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~--------d~p~----------s~~~yiQr~GRagR~~~g~~i~l~~~~~e 233 (395)
|.-+|+++|++++.+|.|++|-+||.. |+-. |-..-.||.|||||...|.||-+++....
T Consensus 469 g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 469 GTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRY 546 (924)
T ss_pred CcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhh
Confidence 999999999999999999999999964 4333 44567899999999999999998886543
No 124
>KOG0924|consensus
Probab=98.52 E-value=1.4e-07 Score=97.71 Aligned_cols=135 Identities=23% Similarity=0.282 Sum_probs=101.6
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHH----Hccc--CC--CCceeEEeccCCCCCHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDV----LKPL--EP--MVKASMFVGQSSGVTQQEQKEI 167 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~----L~~~--~~--~~~~~~lhg~~~~~~~~~R~~~ 167 (395)
..|--+.+...+.+...-|. ....+-+|||..-.+.++..+.. |.+. .| .+.+..|.+ .|++.-+.++
T Consensus 540 k~p~eDYVeaavkq~v~Ihl-~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYS---QLp~dlQ~ki 615 (1042)
T KOG0924|consen 540 KTPVEDYVEAAVKQAVQIHL-SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYS---QLPADLQAKI 615 (1042)
T ss_pred cCchHHHHHHHHhhheEeec-cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehh---hCchhhhhhh
Confidence 34444444444444333222 23567899999877665554444 4332 23 478888888 9999999999
Q ss_pred HHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCC------------------CChhhHhhhccccccccCceEEEEEe
Q psy4150 168 MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQ------------------KSPIKMVQRLGRTGRKRNGRCVILLT 229 (395)
Q Consensus 168 l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p------------------~s~~~yiQr~GRagR~~~g~~i~l~~ 229 (395)
++.--.|.-+|+|||++++..|.||++.+||..+.. -|-..-.||.|||||.|.|.|+-+++
T Consensus 616 Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYT 695 (1042)
T KOG0924|consen 616 FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYT 695 (1042)
T ss_pred cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehh
Confidence 998888999999999999999999999999976653 36677899999999999999999988
Q ss_pred CCchh
Q psy4150 230 QGREA 234 (395)
Q Consensus 230 ~~~e~ 234 (395)
.....
T Consensus 696 e~ay~ 700 (1042)
T KOG0924|consen 696 EDAYK 700 (1042)
T ss_pred hhHHH
Confidence 75433
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.52 E-value=9.7e-07 Score=93.76 Aligned_cols=130 Identities=21% Similarity=0.172 Sum_probs=100.0
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
...|.....|+.++.+-+..... .+.+|||.|.|....+.|+..|.+.| ++..+|+. .-...+ .+++.
T Consensus 403 d~iy~t~~~k~~Aii~ei~~~~~------~GrPVLVgt~sI~~SE~ls~~L~~~g--I~h~vLNA---k~~~~E-A~IIa 470 (764)
T PRK12326 403 DRVYATAAEKNDAIVEHIAEVHE------TGQPVLVGTHDVAESEELAERLRAAG--VPAVVLNA---KNDAEE-ARIIA 470 (764)
T ss_pred CceEeCHHHHHHHHHHHHHHHHH------cCCCEEEEeCCHHHHHHHHHHHHhCC--Ccceeecc---CchHhH-HHHHH
Confidence 34566667788888777766543 37899999999999999999999999 88888887 423222 33333
Q ss_pred HHhcC-CccEEEEcCccccCCCCCC---------------CCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 170 KFRAG-EFNTLIATSVGEEGLDIGE---------------IDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 170 ~Fk~g-~~~vLVaT~v~~~GlDip~---------------v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
..| .-.|.|||+.++||.||.= -=+||-...|.|..--.|-.||+||.| +|.+.+|++-++
T Consensus 471 --~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 471 --EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred --hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 345 4568899999999999862 238898999999999999999999998 677776666544
Q ss_pred h
Q psy4150 233 E 233 (395)
Q Consensus 233 e 233 (395)
+
T Consensus 549 d 549 (764)
T PRK12326 549 D 549 (764)
T ss_pred h
Confidence 3
No 126
>KOG0947|consensus
Probab=98.51 E-value=3.2e-07 Score=98.23 Aligned_cols=108 Identities=22% Similarity=0.327 Sum_probs=84.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccC----------------------------CC---------CceeEEeccCCCCCHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLE----------------------------PM---------VKASMFVGQSSGVTQQ 162 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~----------------------------~~---------~~~~~lhg~~~~~~~~ 162 (395)
--++||||-+++.|++.+++|.... |. -...+ ||+++-+-
T Consensus 567 lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaV---HH~GlLPi 643 (1248)
T KOG0947|consen 567 LLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAV---HHGGLLPI 643 (1248)
T ss_pred cCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchh---hcccchHH
Confidence 4689999999999999999997432 00 01223 34488888
Q ss_pred HHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC---------ChhhHhhhcccccccc---CceEEEEEeC
Q psy4150 163 EQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK---------SPIKMVQRLGRTGRKR---NGRCVILLTQ 230 (395)
Q Consensus 163 ~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~---------s~~~yiQr~GRagR~~---~g~~i~l~~~ 230 (395)
-..-+.--|..|-++||+||..++.|+|.|.-.+|+. .+-+ .|-.|.|+.|||||.| .|.+++++..
T Consensus 644 vKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~-Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~ 722 (1248)
T KOG0947|consen 644 VKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFS-SLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKD 722 (1248)
T ss_pred HHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEee-ehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecC
Confidence 8888888899999999999999999999997666653 2222 5789999999999997 6777777665
Q ss_pred C
Q psy4150 231 G 231 (395)
Q Consensus 231 ~ 231 (395)
.
T Consensus 723 ~ 723 (1248)
T KOG0947|consen 723 S 723 (1248)
T ss_pred C
Confidence 4
No 127
>KOG1123|consensus
Probab=98.48 E-value=1.9e-06 Score=86.99 Aligned_cols=129 Identities=23% Similarity=0.373 Sum_probs=99.8
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.-.+.|+..-.-||.-|-. .+.++|||....-.....+-.|.+ -++.| ..+|.+|..+++.|+.
T Consensus 523 vMNP~KFraCqfLI~~HE~------RgDKiIVFsDnvfALk~YAikl~K-------pfIYG---~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHER------RGDKIIVFSDNVFALKEYAIKLGK-------PFIYG---PTSQNERMKILQNFQT 586 (776)
T ss_pred ecCcchhHHHHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHcCC-------ceEEC---CCchhHHHHHHHhccc
Confidence 4455577665555554433 478999999987766666655543 24778 8999999999999998
Q ss_pred C-CccEEEEcCccccCCCCCCCCEEEEcCCCC-ChhhHhhhcccccccc-------CceEEEEEeCCchhhHHH
Q psy4150 174 G-EFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPIKMVQRLGRTGRKR-------NGRCVILLTQGREAHNFQ 238 (395)
Q Consensus 174 g-~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~yiQr~GRagR~~-------~g~~i~l~~~~~e~~~~~ 238 (395)
+ .++.++-+.|+...+|+|+++++|+..... |..+--||.||..|+. +.-.+.+++.++.++.|.
T Consensus 587 n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YS 660 (776)
T KOG1123|consen 587 NPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYS 660 (776)
T ss_pred CCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhh
Confidence 6 789999999999999999999999998765 7788899999999983 233567788877776664
No 128
>KOG0948|consensus
Probab=98.39 E-value=8.2e-07 Score=93.10 Aligned_cols=113 Identities=24% Similarity=0.345 Sum_probs=85.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC----------------------------CC---C------ceeEEeccCCCCCH
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE----------------------------PM---V------KASMFVGQSSGVTQ 161 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~----------------------------~~---~------~~~~lhg~~~~~~~ 161 (395)
...+||||+-+++.|+.++-.+.+.. |. + ...+.| +|+-+
T Consensus 382 ~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHH---sGLLP 458 (1041)
T KOG0948|consen 382 NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHH---SGLLP 458 (1041)
T ss_pred cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcccccc---ccchH
Confidence 46789999999999999998876532 00 0 123333 48888
Q ss_pred HHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE----cCCCC----ChhhHhhhcccccccc---CceEEEEEeC
Q psy4150 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC----FDAQK----SPIKMVQRLGRTGRKR---NGRCVILLTQ 230 (395)
Q Consensus 162 ~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~----~d~p~----s~~~yiQr~GRagR~~---~g~~i~l~~~ 230 (395)
--..-+.=-|..|=+++|+||...+.|||.|.-++|+- ||-.. |.-.|||+.|||||.| .|.+++++.+
T Consensus 459 IlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 459 ILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred HHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 87777777899999999999999999999998777763 33222 5668999999999997 5777877766
Q ss_pred Cchh
Q psy4150 231 GREA 234 (395)
Q Consensus 231 ~~e~ 234 (395)
.=+.
T Consensus 539 km~~ 542 (1041)
T KOG0948|consen 539 KMEP 542 (1041)
T ss_pred cCCH
Confidence 4433
No 129
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.37 E-value=3.3e-06 Score=93.54 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 102 RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 102 ~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
.+.+.|...... ..+++|||+++....+.+++.|...........+.. +.. ..|..+++.|+.|+..||+|
T Consensus 661 ~ia~~i~~l~~~-----~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q---~~~-~~r~~ll~~F~~~~~~iLlg 731 (850)
T TIGR01407 661 EIASYIIEITAI-----TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQ---GIN-GSRAKIKKRFNNGEKAILLG 731 (850)
T ss_pred HHHHHHHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEec---CCC-ccHHHHHHHHHhCCCeEEEE
Confidence 455555555442 357999999999999999999976321111223333 333 47889999999999999999
Q ss_pred cCccccCCCCCCCC--EEEEcCCCCC------------------------------hhhHhhhcccccccc-CceEEEEE
Q psy4150 182 TSVGEEGLDIGEID--LVICFDAQKS------------------------------PIKMVQRLGRTGRKR-NGRCVILL 228 (395)
Q Consensus 182 T~v~~~GlDip~v~--~VI~~d~p~s------------------------------~~~yiQr~GRagR~~-~g~~i~l~ 228 (395)
|+.+.||||+|+.. +||+..+|.. ...+.|.+||.-|.. +.++++++
T Consensus 732 t~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 732 TSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred cceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 99999999999866 6666666631 134678889998885 33333333
No 130
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=4e-06 Score=91.70 Aligned_cols=131 Identities=20% Similarity=0.178 Sum_probs=100.6
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
...|.....|+.++.+-+..... .+.+|||-|.|....+.|+..|...| ++..+|.. .....+- +++.
T Consensus 604 D~vy~t~~eK~~Aii~ei~~~~~------~GrPVLVGT~SVe~SE~lS~~L~~~g--I~H~VLNA---K~h~~EA-eIVA 671 (1112)
T PRK12901 604 DLVYKTKREKYNAVIEEITELSE------AGRPVLVGTTSVEISELLSRMLKMRK--IPHNVLNA---KLHQKEA-EIVA 671 (1112)
T ss_pred CeEecCHHHHHHHHHHHHHHHHH------CCCCEEEEeCcHHHHHHHHHHHHHcC--CcHHHhhc---cchhhHH-HHHH
Confidence 34456667788888877777544 37899999999999999999999999 88888876 4333332 2222
Q ss_pred HHhcC-CccEEEEcCccccCCCCC--------CCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 170 KFRAG-EFNTLIATSVGEEGLDIG--------EIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 170 ~Fk~g-~~~vLVaT~v~~~GlDip--------~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
..| .-.|-|||+.++||.||- +-=+||--..+.|..---|-.||+||.| +|..-+|++-.++.
T Consensus 672 --~AG~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 672 --EAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred --hcCCCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 245 456889999999999996 3348888889999999999999999998 67766666655443
No 131
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.33 E-value=4.7e-06 Score=90.78 Aligned_cols=129 Identities=20% Similarity=0.188 Sum_probs=98.3
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHH-HHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQK-EIMK 169 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~-~~l~ 169 (395)
..|.....|..++.+-+.+... .+.+|||-|.|....+.|+..|.+.| ++..+|+. . +.+++ +++.
T Consensus 545 ~iy~t~~~k~~ai~~ei~~~~~------~grPvLigt~si~~se~ls~~L~~~g--i~h~vLNa---k--~~~~Ea~iia 611 (970)
T PRK12899 545 EFYMTEREKYHAIVAEIASIHR------KGNPILIGTESVEVSEKLSRILRQNR--IEHTVLNA---K--NHAQEAEIIA 611 (970)
T ss_pred cEecCHHHHHHHHHHHHHHHHh------CCCCEEEEeCcHHHHHHHHHHHHHcC--Ccceeccc---c--hhhhHHHHHH
Confidence 3455556788887776666543 36889999999999999999999999 88888877 3 22333 2332
Q ss_pred HHhcC-CccEEEEcCccccCCCCCC---C-----CEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 170 KFRAG-EFNTLIATSVGEEGLDIGE---I-----DLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 170 ~Fk~g-~~~vLVaT~v~~~GlDip~---v-----~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
..| .-.|.|||+.++||.||.- | =+||.-..|.|..--.|-.||+||.| +|.+.+|++-+++.
T Consensus 612 --~AG~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL 684 (970)
T PRK12899 612 --GAGKLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRL 684 (970)
T ss_pred --hcCCCCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHH
Confidence 346 4678999999999999842 2 27888889999999999999999998 67777777665443
No 132
>KOG1000|consensus
Probab=98.29 E-value=4.5e-06 Score=84.21 Aligned_cols=146 Identities=15% Similarity=0.209 Sum_probs=116.4
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC-
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG- 174 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g- 174 (395)
.-.|....++.|..+.-- -..++.+++||+.-....+.+...+.+.+ +....+.| ..+..+|....+.|...
T Consensus 470 giaK~~av~eyi~~~~~l--~d~~~~KflVFaHH~~vLd~Iq~~~~~r~--vg~IRIDG---st~s~~R~ll~qsFQ~se 542 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFL--PDAPPRKFLVFAHHQIVLDTIQVEVNKRK--VGSIRIDG---STPSHRRTLLCQSFQTSE 542 (689)
T ss_pred cccccHHHHHHHHhCccc--ccCCCceEEEEehhHHHHHHHHHHHHHcC--CCeEEecC---CCCchhHHHHHHHhcccc
Confidence 345777777777663211 11467899999999999999999999998 88899999 89999999999999876
Q ss_pred CccE-EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC---ceEEEEEeCCchhhHHHHHHHHhHHHH
Q psy4150 175 EFNT-LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN---GRCVILLTQGREAHNFQTSMQTCKSYV 248 (395)
Q Consensus 175 ~~~v-LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~~~~~e~~~~~~~~~~~~~~i 248 (395)
+..| +++...++.||++...+.|+...++|||--++|.-.|+.|.|+ -.+++|+..++.++.+...+++...-+
T Consensus 543 ev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 543 EVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred ceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 5555 6777899999999999999999999999999998777777763 445678888888877766664444333
No 133
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.27 E-value=5.7e-06 Score=89.28 Aligned_cols=119 Identities=17% Similarity=0.151 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCC---CceeEEeccCCCC--------------C-
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM---VKASMFVGQSSGV--------------T- 160 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~---~~~~~lhg~~~~~--------------~- 160 (395)
.+..+...+.+|+..... ..+.+++|||.++..|..+.+.|.+..+. ..+..+++..++- +
T Consensus 494 ~~~~ia~~i~~h~~~~~~-~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~ 572 (667)
T TIGR00348 494 RLESIAKDIAEHYAKFKE-LFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDK 572 (667)
T ss_pred HHHHHHHHHHHHHHHhhh-cccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhcccccc
Confidence 344555555556544222 23589999999999999999998776543 2455566522110 0
Q ss_pred ---HHHHHHHHHHHhc-CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc
Q psy4150 161 ---QQEQKEIMKKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219 (395)
Q Consensus 161 ---~~~R~~~l~~Fk~-g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~ 219 (395)
......++++|+. +.++|||++|.+..|.|.|.+++++..-+-.+. .++|.+||+.|.
T Consensus 573 ~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~ 634 (667)
T TIGR00348 573 SDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRI 634 (667)
T ss_pred chhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccc
Confidence 0123478999987 689999999999999999999999887766654 689999999994
No 134
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.25 E-value=6.4e-06 Score=89.57 Aligned_cols=131 Identities=20% Similarity=0.169 Sum_probs=99.8
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
...|.....|+.++.+-+..... .+.+|||-|.|....+.|+..|.+.+ ++..+|.. .....+ .+++.
T Consensus 425 d~vy~t~~eK~~Ai~~ei~~~~~------~GrPVLVGT~SVe~SE~ls~~L~~~g--i~h~VLNA---k~~~~E-A~IIa 492 (913)
T PRK13103 425 DLVYLTAEEKYAAIITDIKECMA------LGRPVLVGTATIETSEHMSNLLKKEG--IEHKVLNA---KYHEKE-AEIIA 492 (913)
T ss_pred CeEEcCHHHHHHHHHHHHHHHHh------CCCCEEEEeCCHHHHHHHHHHHHHcC--CcHHHhcc---ccchhH-HHHHH
Confidence 34566677788888877776544 47899999999999999999999999 87777776 333222 22333
Q ss_pred HHhcC-CccEEEEcCccccCCCCC-------------------------------------CCCEEEEcCCCCChhhHhh
Q psy4150 170 KFRAG-EFNTLIATSVGEEGLDIG-------------------------------------EIDLVICFDAQKSPIKMVQ 211 (395)
Q Consensus 170 ~Fk~g-~~~vLVaT~v~~~GlDip-------------------------------------~v~~VI~~d~p~s~~~yiQ 211 (395)
..| .-.|.|||+.++||.||- +-=+||--..|.|..---|
T Consensus 493 --~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~Q 570 (913)
T PRK13103 493 --QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQ 570 (913)
T ss_pred --cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHH
Confidence 456 567899999999999994 1227888889999999999
Q ss_pred hcccccccc-CceEEEEEeCCchh
Q psy4150 212 RLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 212 r~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
-.||+||.| +|.+-+|++-+++.
T Consensus 571 LrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 571 LRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred hccccccCCCCCceEEEEEcCcHH
Confidence 999999998 67777777665443
No 135
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.22 E-value=4.6e-06 Score=74.43 Aligned_cols=108 Identities=23% Similarity=0.309 Sum_probs=73.7
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC--ccccCCCCCC--C
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS--VGEEGLDIGE--I 194 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~--v~~~GlDip~--v 194 (395)
.++++|||+++....+.+.+.+...+..-...++.- +...+..+++.|+.++-.||+|+. .+.+|||+++ +
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 358999999999999999999987652111223332 245678899999999999999998 9999999995 8
Q ss_pred CEEEEcCCCC----C--------------------------hhhHhhhccccccccCceEEEEEeCC
Q psy4150 195 DLVICFDAQK----S--------------------------PIKMVQRLGRTGRKRNGRCVILLTQG 231 (395)
Q Consensus 195 ~~VI~~d~p~----s--------------------------~~~yiQr~GRagR~~~g~~i~l~~~~ 231 (395)
..||...+|. + .....|-+||+-|..+...++++.+.
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8999998884 1 12346789999999755555555543
No 136
>KOG1015|consensus
Probab=98.19 E-value=5.1e-06 Score=89.05 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=105.7
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc---CC-----------------CCceeEEecc
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL---EP-----------------MVKASMFVGQ 155 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~---~~-----------------~~~~~~lhg~ 155 (395)
-++|+-.|++||...-. -+.++|||.++-.+.+.|-.+|..- |. +.....|.|
T Consensus 1124 ~SgKmiLLleIL~mcee------IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDG- 1196 (1567)
T KOG1015|consen 1124 HSGKMILLLEILRMCEE------IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDG- 1196 (1567)
T ss_pred cCcceehHHHHHHHHHH------hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecC-
Confidence 45699999999877533 3789999999999988888888531 11 123344555
Q ss_pred CCCCCHHHHHHHHHHHhcCC-c---cEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC---ceEEEEE
Q psy4150 156 SSGVTQQEQKEIMKKFRAGE-F---NTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN---GRCVILL 228 (395)
Q Consensus 156 ~~~~~~~~R~~~l~~Fk~g~-~---~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~ 228 (395)
..+..+|..+...|.+-. . -.||+|-+++-|||+-.++.||+||..|+|.--+|-+=|+.|.|+ ..+|-|+
T Consensus 1197 --st~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1197 --STTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred --cccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 788999999999998742 2 269999999999999999999999999999999999999999984 3344467
Q ss_pred eCCchhhHHHH
Q psy4150 229 TQGREAHNFQT 239 (395)
Q Consensus 229 ~~~~e~~~~~~ 239 (395)
..++-++.+.+
T Consensus 1275 AqGTmEeKIYk 1285 (1567)
T KOG1015|consen 1275 AQGTMEEKIYK 1285 (1567)
T ss_pred hcccHHHHHHH
Confidence 77777666543
No 137
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.08 E-value=1.4e-05 Score=85.35 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCc---eeEEeccCCCCCHHHHHHHHHHHhcC--
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVK---ASMFVGQSSGVTQQEQKEIMKKFRAG-- 174 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~---~~~lhg~~~~~~~~~R~~~l~~Fk~g-- 174 (395)
.+.+...|.+++..........++||||.+..+|+.+...|....|... +..+.| + ..+-...+..|...
T Consensus 406 ~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~---d--~~~~q~~Id~f~~ke~ 480 (875)
T COG4096 406 TETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITG---D--AEQAQALIDNFIDKEK 480 (875)
T ss_pred HHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEec---c--chhhHHHHHHHHhcCC
Confidence 3444455555544311112267999999999999999999998876544 456666 3 33334556777663
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~ 219 (395)
--+|.|+.+++..|||+|.|-.++.+-.-.|..-|.|++||+-|.
T Consensus 481 ~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 481 YPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred CCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 346888889999999999999999999999999999999999996
No 138
>KOG0949|consensus
Probab=98.07 E-value=8.4e-06 Score=87.82 Aligned_cols=74 Identities=26% Similarity=0.389 Sum_probs=63.7
Q ss_pred CCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCC-CCChhhHhhhcccccccc---CceEEEEEeC
Q psy4150 157 SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDA-QKSPIKMVQRLGRTGRKR---NGRCVILLTQ 230 (395)
Q Consensus 157 ~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~-p~s~~~yiQr~GRagR~~---~g~~i~l~~~ 230 (395)
++|+...|..+.=-||.|...||+||..++-|||.|.-.+|.--|. --++-.|-|+.|||||.| .|.++++-.+
T Consensus 970 aglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 970 AGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred cccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCc
Confidence 3999999999999999999999999999999999997777766653 348899999999999997 5777766443
No 139
>KOG0386|consensus
Probab=98.04 E-value=1.6e-05 Score=85.91 Aligned_cols=133 Identities=25% Similarity=0.302 Sum_probs=111.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
....|++.|-.+|-.+... ++|||.||.-....+.+.++|.-.+ ++...+-| .....+|-..++.|..-
T Consensus 707 R~sGKfELLDRiLPKLkat------gHRVLlF~qMTrlmdimEdyL~~~~--~kYlRLDG---~TK~~eRg~ll~~FN~P 775 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKAT------GHRVLLFSQMTRLMDILEDYLQIRE--YKYLRLDG---QTKVEERGDLLEIFNAP 775 (1157)
T ss_pred HhccHHHHHHhhhHHHHhc------CcchhhHHHHHHHHHHHHHHHhhhh--hheeeecC---CcchhhHHHHHHHhcCC
Confidence 3566999888888776553 8999999999999999999998887 88888999 78899999999999885
Q ss_pred C---ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc---CceEEEEEeCCchhhHHH
Q psy4150 175 E---FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR---NGRCVILLTQGREAHNFQ 238 (395)
Q Consensus 175 ~---~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~e~~~~~ 238 (395)
. +.+|.+|-.++.|+|+..++.||+||..|++....|+..||-|.| ...++.+++-...++.+.
T Consensus 776 ds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il 845 (1157)
T KOG0386|consen 776 DSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKIL 845 (1157)
T ss_pred CCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHH
Confidence 4 346899999999999999999999999999999999999999987 345555666555544443
No 140
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.03 E-value=1.6e-05 Score=86.33 Aligned_cols=96 Identities=21% Similarity=0.365 Sum_probs=79.8
Q ss_pred cceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCc---HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHH
Q psy4150 89 MSSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANY---RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 89 ~~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t---~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~ 165 (395)
+...|... +-..++.+++..+ +.-.|||++. ++.++.|+++|+.+| +++..+|+ . ..
T Consensus 314 IvD~y~~~-~~~e~~~elvk~l---------G~GgLIfV~~d~G~e~aeel~e~Lr~~G--i~a~~~~a---~-----~~ 373 (1187)
T COG1110 314 IVDIYVES-ESLEKVVELVKKL---------GDGGLIFVPIDYGREKAEELAEYLRSHG--INAELIHA---E-----KE 373 (1187)
T ss_pred eeeeeccC-ccHHHHHHHHHHh---------CCCeEEEEEcHHhHHHHHHHHHHHHhcC--ceEEEeec---c-----ch
Confidence 33444444 6667777777765 4568999999 999999999999999 99999987 2 26
Q ss_pred HHHHHHhcCCccEEEEc----CccccCCCCCC-CCEEEEcCCCC
Q psy4150 166 EIMKKFRAGEFNTLIAT----SVGEEGLDIGE-IDLVICFDAQK 204 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVaT----~v~~~GlDip~-v~~VI~~d~p~ 204 (395)
+.++.|..|++++||++ .++-||||+|+ +.++|.|+.|+
T Consensus 374 ~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred hhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 78999999999999886 57999999997 78999999995
No 141
>KOG0926|consensus
Probab=98.03 E-value=2.6e-06 Score=90.04 Aligned_cols=82 Identities=27% Similarity=0.357 Sum_probs=69.9
Q ss_pred CceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC------------------Chhh
Q psy4150 147 VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK------------------SPIK 208 (395)
Q Consensus 147 ~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~------------------s~~~ 208 (395)
+.|..|.+ -++...+.+++...-.|.--++|+|+|++..|.||+|.+||..+.-+ |-.+
T Consensus 605 LyvLPLYS---LLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkAS 681 (1172)
T KOG0926|consen 605 LYVLPLYS---LLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKAS 681 (1172)
T ss_pred eEEeehhh---hcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccc
Confidence 45666666 78999999999999999999999999999999999999999655432 4556
Q ss_pred HhhhccccccccCceEEEEEeCC
Q psy4150 209 MVQRLGRTGRKRNGRCVILLTQG 231 (395)
Q Consensus 209 yiQr~GRagR~~~g~~i~l~~~~ 231 (395)
--||.|||||.|.|.||-+++..
T Consensus 682 adQRAGRAGRtgpGHcYRLYSSA 704 (1172)
T KOG0926|consen 682 ADQRAGRAGRTGPGHCYRLYSSA 704 (1172)
T ss_pred cchhccccCCCCCCceeehhhhH
Confidence 68999999999999999887653
No 142
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.02 E-value=5.8e-05 Score=81.92 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=65.5
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCH-HHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQ-QEQKEIMK 169 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~-~~R~~~l~ 169 (395)
..|.....|..++.+-+..... .+.+|||-|.|....+.|+..|.+.| ++..+++. .-.. ..=.+++.
T Consensus 401 ~v~~t~~~K~~AI~~ei~~~~~------~grPVLIgT~SIe~SE~ls~~L~~~g--i~h~vLNA---k~~~~~~EA~IIA 469 (870)
T CHL00122 401 LIYKDELSKWRAIADECLQMHQ------TGRPILIGTTTIEKSELLSQLLKEYR--LPHQLLNA---KPENVRRESEIVA 469 (870)
T ss_pred eEEeCHHHHHHHHHHHHHHHHh------cCCCEEEeeCCHHHHHHHHHHHHHcC--CccceeeC---CCccchhHHHHHH
Confidence 4455666788877766555433 47899999999999999999999999 88888887 3211 22233443
Q ss_pred HHhcC-CccEEEEcCccccCCCCC
Q psy4150 170 KFRAG-EFNTLIATSVGEEGLDIG 192 (395)
Q Consensus 170 ~Fk~g-~~~vLVaT~v~~~GlDip 192 (395)
+ .| .-.|-|||+.++||.||-
T Consensus 470 ~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 470 Q--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred h--cCCCCcEEEeccccCCCcCee
Confidence 2 55 466889999999999984
No 143
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.86 E-value=0.00013 Score=81.70 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..+.+.|...... ..+++|||+++.+..+.+++.|......-....+.- +++...|..+++.|+.++-.||+
T Consensus 738 ~~la~~i~~l~~~-----~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Q---g~~~~~r~~l~~~F~~~~~~iLl 809 (928)
T PRK08074 738 EEVAAYIAKIAKA-----TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQ---GVSSGSRARLTKQFQQFDKAILL 809 (928)
T ss_pred HHHHHHHHHHHHh-----CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEec---CCCCCCHHHHHHHHHhcCCeEEE
Confidence 4555556555432 357999999999999999999976542111222322 34445678899999999889999
Q ss_pred EcCccccCCCCCC--CCEEEEcCCCC
Q psy4150 181 ATSVGEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 181 aT~v~~~GlDip~--v~~VI~~d~p~ 204 (395)
+|....+|||+|+ +.+||+..+|.
T Consensus 810 G~~sFwEGVD~pg~~l~~viI~kLPF 835 (928)
T PRK08074 810 GTSSFWEGIDIPGDELSCLVIVRLPF 835 (928)
T ss_pred ecCcccCccccCCCceEEEEEecCCC
Confidence 9999999999996 57888877664
No 144
>KOG4439|consensus
Probab=97.83 E-value=0.00023 Score=74.75 Aligned_cols=136 Identities=20% Similarity=0.266 Sum_probs=114.2
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc--
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA-- 173 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~-- 173 (395)
.+-|+..++++++..+. ....+++|...-.....-+...|.+.| +....+|| .....+|..+++.|..
T Consensus 727 ~S~Ki~~~l~~le~i~~-----~skeK~viVSQwtsvLniv~~hi~~~g--~~y~si~G---qv~vK~Rq~iv~~FN~~k 796 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILT-----SSKEKVVIVSQWTSVLNIVRKHIQKGG--HIYTSITG---QVLVKDRQEIVDEFNQEK 796 (901)
T ss_pred chhHHHHHHHHHHHHhh-----cccceeeehhHHHHHHHHHHHHHhhCC--eeeeeecC---ccchhHHHHHHHHHHhcc
Confidence 45589999999988743 456788888888888888889999988 88899999 9999999999999976
Q ss_pred CCccE-EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCce---EEEEEeCCchhhHHHHHH
Q psy4150 174 GEFNT-LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGR---CVILLTQGREAHNFQTSM 241 (395)
Q Consensus 174 g~~~v-LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~---~i~l~~~~~e~~~~~~~~ 241 (395)
|..+| |++-..++.|||+-+.+++|..|+.|++.---|.+.|.-|.|+.+ ++-|++.++.++.+...+
T Consensus 797 ~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQ 868 (901)
T KOG4439|consen 797 GGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQ 868 (901)
T ss_pred CCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHH
Confidence 44555 567789999999999999999999999998889889999987433 345788999888887766
No 145
>KOG0925|consensus
Probab=97.81 E-value=6.3e-05 Score=76.04 Aligned_cols=131 Identities=21% Similarity=0.295 Sum_probs=89.0
Q ss_pred eeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc----CC---CCceeEEeccCCCCCHHHHH
Q psy4150 93 YAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL----EP---MVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 93 ~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~----~~---~~~~~~lhg~~~~~~~~~R~ 165 (395)
|+...+-.+.|...+...++-|.. +..+-+|||...-+.++..++.+... ++ .+++..+|. .++.
T Consensus 227 ~Yt~e~erDylEaairtV~qih~~-ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP-------~~qq 298 (699)
T KOG0925|consen 227 FYTPEPERDYLEAAIRTVLQIHMC-EEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP-------AQQQ 298 (699)
T ss_pred EecCCCChhHHHHHHHHHHHHHhc-cCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc-------hhhc
Confidence 444444444444444333333332 34678999999988888777766532 21 266776664 3333
Q ss_pred HHHHHHh---cC--CccEEEEcCccccCCCCCCCCEEEEcCC------------------CCChhhHhhhccccccccCc
Q psy4150 166 EIMKKFR---AG--EFNTLIATSVGEEGLDIGEIDLVICFDA------------------QKSPIKMVQRLGRTGRKRNG 222 (395)
Q Consensus 166 ~~l~~Fk---~g--~~~vLVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~yiQr~GRagR~~~g 222 (395)
.+++-.. .| .-+|+|+|++++..+.+++|-+||.-++ |.|..+-.||.||+||.+.|
T Consensus 299 ~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pG 378 (699)
T KOG0925|consen 299 RIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 378 (699)
T ss_pred cccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCC
Confidence 3433322 23 3469999999999999999999997654 44778889999999999999
Q ss_pred eEEEEEeCC
Q psy4150 223 RCVILLTQG 231 (395)
Q Consensus 223 ~~i~l~~~~ 231 (395)
+++.++++.
T Consensus 379 kcfrLYte~ 387 (699)
T KOG0925|consen 379 KCFRLYTEE 387 (699)
T ss_pred ceEEeecHH
Confidence 999988764
No 146
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.78 E-value=0.00016 Score=77.97 Aligned_cols=118 Identities=21% Similarity=0.290 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCc-c
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF-N 177 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~-~ 177 (395)
=...+...|...... ..+++|||+++....+.+++.|...... .....+| ...+...++.|+.+.- -
T Consensus 463 ~~~~~~~~i~~~~~~-----~~~~~lvlF~Sy~~l~~~~~~~~~~~~~-~~v~~q~------~~~~~~~l~~f~~~~~~~ 530 (654)
T COG1199 463 LLAKLAAYLREILKA-----SPGGVLVLFPSYEYLKRVAERLKDERST-LPVLTQG------EDEREELLEKFKASGEGL 530 (654)
T ss_pred HHHHHHHHHHHHHhh-----cCCCEEEEeccHHHHHHHHHHHhhcCcc-ceeeecC------CCcHHHHHHHHHHhcCCe
Confidence 444555555555543 3459999999999999999999876621 2344455 3344588999988655 8
Q ss_pred EEEEcCccccCCCCCC--CCEEEEcCCCC------------------------------ChhhHhhhcccccccc-CceE
Q psy4150 178 TLIATSVGEEGLDIGE--IDLVICFDAQK------------------------------SPIKMVQRLGRTGRKR-NGRC 224 (395)
Q Consensus 178 vLVaT~v~~~GlDip~--v~~VI~~d~p~------------------------------s~~~yiQr~GRagR~~-~g~~ 224 (395)
++|+|..+.+|||+|+ +.+||...+|. ....+.|-+||.-|.. +.++
T Consensus 531 ~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ 610 (654)
T COG1199 531 ILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGV 610 (654)
T ss_pred EEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceE
Confidence 9999999999999996 57888888774 2456789999999984 4444
Q ss_pred EEEE
Q psy4150 225 VILL 228 (395)
Q Consensus 225 i~l~ 228 (395)
++++
T Consensus 611 ivll 614 (654)
T COG1199 611 IVLL 614 (654)
T ss_pred EEEe
Confidence 4444
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.71 E-value=0.00051 Score=74.87 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=66.5
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCC-CCHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMK 169 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~-~~~~~R~~~l~ 169 (395)
..|.....|..++.+-+.+... .+.+|||-|.|....+.|+..|.+.| ++..+++. . .....=.+++.
T Consensus 416 ~vy~t~~~K~~Ai~~ei~~~~~------~GrPVLIgT~SVe~SE~ls~~L~~~g--i~h~vLNA---k~~~~~~EA~IIa 484 (939)
T PRK12902 416 QVYKTEIAKWRAVANETAEMHK------QGRPVLVGTTSVEKSELLSALLQEQG--IPHNLLNA---KPENVEREAEIVA 484 (939)
T ss_pred eEEcCHHHHHHHHHHHHHHHHh------CCCCEEEeeCCHHHHHHHHHHHHHcC--CchheeeC---CCcchHhHHHHHH
Confidence 3455567788888776666433 47899999999999999999999999 88888887 3 22222233443
Q ss_pred HHhcC-CccEEEEcCccccCCCCC
Q psy4150 170 KFRAG-EFNTLIATSVGEEGLDIG 192 (395)
Q Consensus 170 ~Fk~g-~~~vLVaT~v~~~GlDip 192 (395)
+ .| .-.|-|||+.++||.||.
T Consensus 485 ~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 485 Q--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred h--cCCCCcEEEeccCCCCCcCEe
Confidence 2 56 456889999999999984
No 148
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=97.68 E-value=2e-05 Score=51.93 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=31.5
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhh
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQ 364 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~ 364 (395)
+.+.+++..|..|++.++ ||.|+.+||+|..|+.|
T Consensus 2 ~~i~~l~~~m~~a~~~~d--fE~Aa~~Rd~i~~l~~q 36 (36)
T PF02151_consen 2 KLIKELEEKMEEAVENED--FEKAARLRDQIKALKKQ 36 (36)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHcC
Confidence 468889999999999999 99999999999999875
No 149
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=97.68 E-value=8.3e-05 Score=82.20 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=85.5
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC-----C---------------------CCc-------eeEEec---cCCCCCHH
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE-----P---------------------MVK-------ASMFVG---QSSGVTQQ 162 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~-----~---------------------~~~-------~~~lhg---~~~~~~~~ 162 (395)
...++|+|+-++..|+..+..+.... + .+. ...+-| ||++|=+.
T Consensus 378 ~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~ 457 (1041)
T COG4581 378 NLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPA 457 (1041)
T ss_pred cCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchH
Confidence 35689999999999999998876221 0 011 000001 45599999
Q ss_pred HHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE----EcC----CCCChhhHhhhcccccccc---CceEEEEEeCC
Q psy4150 163 EQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI----CFD----AQKSPIKMVQRLGRTGRKR---NGRCVILLTQG 231 (395)
Q Consensus 163 ~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI----~~d----~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~ 231 (395)
.+..+..-|..|-++||++|.+++.|+|.|.=++|+ -+| .+-++..|+|..|||||.| .|.++++-.+.
T Consensus 458 ~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 458 IKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred HHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 999999999999999999999999999999766655 222 1227889999999999997 57777664444
Q ss_pred ch
Q psy4150 232 RE 233 (395)
Q Consensus 232 ~e 233 (395)
..
T Consensus 538 ~~ 539 (1041)
T COG4581 538 ES 539 (1041)
T ss_pred CC
Confidence 33
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.65 E-value=0.00041 Score=75.36 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc----CC
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA----GE 175 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~----g~ 175 (395)
...+.+.|...... .+++|||+++....+.+++.|.... -.....+| . ..+..+++.|+. |+
T Consensus 520 ~~~~~~~i~~l~~~------~gg~LVlFtSy~~l~~v~~~l~~~~--~~~ll~Q~---~---~~~~~ll~~f~~~~~~~~ 585 (697)
T PRK11747 520 TAEMAEFLPELLEK------HKGSLVLFASRRQMQKVADLLPRDL--RLMLLVQG---D---QPRQRLLEKHKKRVDEGE 585 (697)
T ss_pred HHHHHHHHHHHHhc------CCCEEEEeCcHHHHHHHHHHHHHhc--CCcEEEeC---C---chHHHHHHHHHHHhccCC
Confidence 34455555554432 3568999999999999999987532 12344555 3 246778877774 67
Q ss_pred ccEEEEcCccccCCCCCC--CCEEEEcCCCC
Q psy4150 176 FNTLIATSVGEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 176 ~~vLVaT~v~~~GlDip~--v~~VI~~d~p~ 204 (395)
-.||++|..+.+|||+|+ +++||+..+|.
T Consensus 586 ~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 586 GSVLFGLQSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred CeEEEEeccccccccCCCCceEEEEEEcCCC
Confidence 789999999999999986 78999888763
No 151
>COG4889 Predicted helicase [General function prediction only]
Probab=97.54 E-value=4.7e-05 Score=81.50 Aligned_cols=100 Identities=27% Similarity=0.338 Sum_probs=76.1
Q ss_pred CccEEEEcCcHHHHHHHHH-----------HHcccCCCCceeEEeccCCCCCHHHHHHHHH---HHhcCCccEEEEcCcc
Q psy4150 120 TTKVIIFANYRVVVAEIFD-----------VLKPLEPMVKASMFVGQSSGVTQQEQKEIMK---KFRAGEFNTLIATSVG 185 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~-----------~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~---~Fk~g~~~vLVaT~v~ 185 (395)
-.|+|-||.+.++...+++ .|.+.++.+++.+=|-.+ .|+..+|...+. .|...+++||-.--++
T Consensus 460 ~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDG-tmNal~R~~l~~l~~~~~~neckIlSNaRcL 538 (1518)
T COG4889 460 MQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDG-TMNALERLDLLELKNTFEPNECKILSNARCL 538 (1518)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccc-cccHHHHHHHHhccCCCCcchheeeccchhh
Confidence 3466777777666544443 344445556666666322 899999855544 3455789999989999
Q ss_pred ccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc
Q psy4150 186 EEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR 220 (395)
Q Consensus 186 ~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~ 220 (395)
++|+|+|..+.||.||+-.+..+.+|.+||+-|..
T Consensus 539 SEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 539 SEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred hcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999983
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.47 E-value=0.0013 Score=72.81 Aligned_cols=88 Identities=17% Similarity=0.196 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 102 RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 102 ~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
.+.+.|..... .+++++|+++|.+..+.+++.|.... +.+ ...|. +. .+..+++.|+.++-.||++
T Consensus 635 ~~~~~i~~~~~------~~g~~LVLFtS~~~l~~v~~~l~~~~--~~~-l~Qg~--~~---~~~~l~~~F~~~~~~vLlG 700 (820)
T PRK07246 635 EIAKRLEELKQ------LQQPILVLFNSKKHLLAVSDLLDQWQ--VSH-LAQEK--NG---TAYNIKKRFDRGEQQILLG 700 (820)
T ss_pred HHHHHHHHHHh------cCCCEEEEECcHHHHHHHHHHHhhcC--CcE-EEeCC--Cc---cHHHHHHHHHcCCCeEEEe
Confidence 45555544432 35899999999999999999997543 333 44441 22 2456899999998899999
Q ss_pred cCccccCCCCC--CCCEEEEcCCC
Q psy4150 182 TSVGEEGLDIG--EIDLVICFDAQ 203 (395)
Q Consensus 182 T~v~~~GlDip--~v~~VI~~d~p 203 (395)
|+...+|||+| +...||...+|
T Consensus 701 ~~sFwEGVD~p~~~~~~viI~kLP 724 (820)
T PRK07246 701 LGSFWEGVDFVQADRMIEVITRLP 724 (820)
T ss_pred cchhhCCCCCCCCCeEEEEEecCC
Confidence 99999999997 35566666655
No 153
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.0036 Score=68.28 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCC-----CceeEEeccCCCCCHHHHHHHHHHHhc-
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM-----VKASMFVGQSSGVTQQEQKEIMKKFRA- 173 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~-----~~~~~lhg~~~~~~~~~R~~~l~~Fk~- 173 (395)
...+.++|.+.... .++.+|||+++-...+.+.+.+...+.. .+..+.-+ -...++..+++.|+.
T Consensus 507 ~~~l~~~i~~~~~~-----~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~----~~~~~~~~~l~~f~~~ 577 (705)
T TIGR00604 507 VRNLGELLVEFSKI-----IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET----KDAQETSDALERYKQA 577 (705)
T ss_pred HHHHHHHHHHHhhc-----CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC----CCcchHHHHHHHHHHH
Confidence 45566666665542 3578999999999999999988765410 12233323 112577889999975
Q ss_pred ---CCccEEEEc--CccccCCCCCC--CCEEEEcCCCC
Q psy4150 174 ---GEFNTLIAT--SVGEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 174 ---g~~~vLVaT--~v~~~GlDip~--v~~VI~~d~p~ 204 (395)
|.-.||+|+ ..++||||+++ +..||..++|-
T Consensus 578 ~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 578 VSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred HhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 455699999 88999999996 78999999885
No 154
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.14 E-value=0.0081 Score=64.31 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc----CCccE
Q psy4150 103 LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA----GEFNT 178 (395)
Q Consensus 103 L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~----g~~~v 178 (395)
+.+.+..++.. .+++++|.+.+....+.+++.|....+ -..++.| +.+ .+...++.|+. |.-.|
T Consensus 458 ~~~~~~~~~~~-----~~G~~lvLfTS~~~~~~~~~~l~~~l~--~~~l~qg---~~~--~~~~l~~~f~~~~~~~~~~v 525 (636)
T TIGR03117 458 VSLSTAAILRK-----AQGGTLVLTTAFSHISAIGQLVELGIP--AEIVIQS---EKN--RLASAEQQFLALYANGIQPV 525 (636)
T ss_pred HHHHHHHHHHH-----cCCCEEEEechHHHHHHHHHHHHhhcC--CCEEEeC---CCc--cHHHHHHHHHHhhcCCCCcE
Confidence 44555554442 357999999999999999999976542 3345556 332 34668888987 47899
Q ss_pred EEEcCccccCCCC----------CCCCEEEEcCCCC
Q psy4150 179 LIATSVGEEGLDI----------GEIDLVICFDAQK 204 (395)
Q Consensus 179 LVaT~v~~~GlDi----------p~v~~VI~~d~p~ 204 (395)
|++|+.+-+|||+ ..+++||+.-+|.
T Consensus 526 L~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 526 LIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred EEeCCccccccccCCccCCCCCCCcccEEEEEeCCC
Confidence 9999999999999 2489999888873
No 155
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.07 E-value=0.0043 Score=53.85 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHhcCC-ccEEEEcCccccCCCCCC--CCEEEEcCCCC
Q psy4150 158 GVTQQEQKEIMKKFRAGE-FNTLIATSVGEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 158 ~~~~~~R~~~l~~Fk~g~-~~vLVaT~v~~~GlDip~--v~~VI~~d~p~ 204 (395)
+.+..+...+++.|+... ..||++|.-+.+|||+|+ +..||...+|.
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCC
Confidence 345556788999998754 379999988999999996 67888888774
No 156
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.91 E-value=0.005 Score=53.50 Aligned_cols=42 Identities=26% Similarity=0.310 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCc---cEEEEcCc--cccCCCCCC--CCEEEEcCCCC
Q psy4150 163 EQKEIMKKFRAGEF---NTLIATSV--GEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 163 ~R~~~l~~Fk~g~~---~vLVaT~v--~~~GlDip~--v~~VI~~d~p~ 204 (395)
+...+++.|+...- .||+|+.- +.+|||+|+ +..||...+|-
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 44788999987543 58888877 999999996 67999888773
No 157
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.90 E-value=0.0036 Score=69.49 Aligned_cols=92 Identities=20% Similarity=0.181 Sum_probs=64.3
Q ss_pred EEEcCcHHHHHHHHHHHcccC----CCCceeEEeccCCCCCHHHHHHHHHHH----------------------hc----
Q psy4150 124 IIFANYRVVVAEIFDVLKPLE----PMVKASMFVGQSSGVTQQEQKEIMKKF----------------------RA---- 173 (395)
Q Consensus 124 iVF~~t~~~ae~l~~~L~~~~----~~~~~~~lhg~~~~~~~~~R~~~l~~F----------------------k~---- 173 (395)
+|=+++.+.+-.++..|.... ..+...++|+ ......|..+.+.+ +.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHS---r~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~ 836 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHA---QDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPAL 836 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecc---cChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccccc
Confidence 566777777777777766543 2355788898 55444444433322 12
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~ 221 (395)
+..-|+|+|+|.+-|+|+ +.+++|-- |.+..+.|||+||+.|.|.
T Consensus 837 ~~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CCCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhccccccc
Confidence 356799999999999998 46666543 5669999999999999863
No 158
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.74 E-value=0.0067 Score=58.40 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=61.4
Q ss_pred HHHHHHhcCCccEEEEcCccccCCCCCCC--------CEEEEcCCCCChhhHhhhccccccccC--c-eEEEEEeCCchh
Q psy4150 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEI--------DLVICFDAQKSPIKMVQRLGRTGRKRN--G-RCVILLTQGREA 234 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVaT~v~~~GlDip~v--------~~VI~~d~p~s~~~yiQr~GRagR~~~--g-~~i~l~~~~~e~ 234 (395)
...+.|.+|+..|+|.|+.++.||-+..- .+-|.+.+||+....+|..||+.|.++ . .+.+++++-..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 55678999999999999999999988632 255788999999999999999999963 3 344455555556
Q ss_pred hHHHHHHHHhHHH
Q psy4150 235 HNFQTSMQTCKSY 247 (395)
Q Consensus 235 ~~~~~~~~~~~~~ 247 (395)
..+.....+..+.
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 6665555333333
No 159
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.0048 Score=67.03 Aligned_cols=125 Identities=19% Similarity=0.161 Sum_probs=84.0
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..|.....|+....+-+..... .+.++||-+.+....+.+++.|.+.| ++..++.. .-. +|..-+-.
T Consensus 406 ~vy~t~~~K~~Aiv~~I~~~~~------~gqPvLvgT~sie~SE~ls~~L~~~~--i~h~VLNA---k~h--~~EA~Iia 472 (822)
T COG0653 406 LVYKTEEEKFKAIVEDIKERHE------KGQPVLVGTVSIEKSELLSKLLRKAG--IPHNVLNA---KNH--AREAEIIA 472 (822)
T ss_pred ccccchHHHHHHHHHHHHHHHh------cCCCEEEcCcceecchhHHHHHHhcC--CCceeecc---ccH--HHHHHHHh
Confidence 3455566688887777766544 47999999999999999999999999 87777766 333 33333333
Q ss_pred HhcCC-ccEEEEcCccccCCCCCCCC-----------EEEEcCCCCChhhHhhhccccccccC-ceEEEEEe
Q psy4150 171 FRAGE-FNTLIATSVGEEGLDIGEID-----------LVICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLT 229 (395)
Q Consensus 171 Fk~g~-~~vLVaT~v~~~GlDip~v~-----------~VI~~d~p~s~~~yiQr~GRagR~~~-g~~i~l~~ 229 (395)
+ .|. --|-|||+.++||.||.--. +||--.-..|..---|-.||+||.|+ |....|++
T Consensus 473 ~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 473 Q-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred h-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 3 343 35779999999999985222 23333333333333478899999985 44444443
No 160
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.38 E-value=0.014 Score=63.06 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=57.8
Q ss_pred HHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC----ccccCCCCCCCCEEEEcCCCC----
Q psy4150 133 VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS----VGEEGLDIGEIDLVICFDAQK---- 204 (395)
Q Consensus 133 ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~----v~~~GlDip~v~~VI~~d~p~---- 204 (395)
++.+.+.|.+..|..++..+.+ ..++..|. ++.+|||+|. +++ +++.+|+.+|...
T Consensus 440 ter~eeeL~~~FP~~~V~r~d~----------d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~ 503 (665)
T PRK14873 440 ARRTAEELGRAFPGVPVVTSGG----------DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGR 503 (665)
T ss_pred HHHHHHHHHHHCCCCCEEEECh----------HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcC
Confidence 7788888888777666665443 24789996 5999999998 555 4788888887653
Q ss_pred --------ChhhHhhhcccccccc-CceEEEE
Q psy4150 205 --------SPIKMVQRLGRTGRKR-NGRCVIL 227 (395)
Q Consensus 205 --------s~~~yiQr~GRagR~~-~g~~i~l 227 (395)
....+.|-.||+||.+ .|.+++.
T Consensus 504 pDfRA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 504 QDLRAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred CCcChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 3445688899999986 4555554
No 161
>KOG1001|consensus
Probab=96.36 E-value=0.0017 Score=69.77 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=105.6
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC-C
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG-E 175 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g-~ 175 (395)
+.|+..+..+|.. . ..+.. .++|||++....++-+.-.|...+ +....+.| .|+...|...+..|..+ .
T Consensus 521 s~ki~~~~~~l~~---~-~~s~~-~kiiifsq~~~~l~l~~~~l~~~~--~~~~~~~g---~~~~~~r~~s~~~~~~~~~ 590 (674)
T KOG1001|consen 521 SSKIYAFLKILQA---K-EMSEQ-PKIVIFSQLIWGLALVCLRLFFKG--FVFLRYDG---EMLMKIRTKSFTDFPCDPL 590 (674)
T ss_pred hhhhHHHHHHHhh---c-cCCCC-CceeeehhHHHHHHHhhhhhhhcc--cccchhhh---hhHHHHHHhhhcccccCcc
Confidence 4466666666652 1 11222 499999999999999999998777 77777888 99999999999999965 3
Q ss_pred ccE-EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC---ceEEEEEeCCchhhHHHHHH
Q psy4150 176 FNT-LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN---GRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 176 ~~v-LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~~~~~e~~~~~~~~ 241 (395)
..| |++..++.-|+++..+++|+..|+-|++..--|.+-|+-|-|+ -.+.-++..+..++.+.+.+
T Consensus 591 ~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 591 VTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred HHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 344 5788999999999999999999999999999999888888874 33444666666676666666
No 162
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.35 E-value=0.019 Score=62.48 Aligned_cols=100 Identities=16% Similarity=0.277 Sum_probs=76.9
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.++.|.....-.+..... .+.+++|.++|+..|...++.+.+..+ ++++..+|| +++..+|..++..+.
T Consensus 291 TGSGKT~va~~~il~~~~------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G---~~~~~~r~~~~~~l~ 361 (681)
T PRK10917 291 VGSGKTVVAALAALAAIE------AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTG---SLKGKERREILEAIA 361 (681)
T ss_pred CCCcHHHHHHHHHHHHHH------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcC---CCCHHHHHHHHHHHh
Confidence 345566554433333332 257999999999999988887776532 288999999 999999999999999
Q ss_pred cCCccEEEEcC-ccccCCCCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATS-VGEEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~-v~~~GlDip~v~~VI~~d~p 203 (395)
+|.++|+|+|. .+..++.+..+.+||.=...
T Consensus 362 ~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 362 SGEADIVIGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred CCCCCEEEchHHHhcccchhcccceEEEechh
Confidence 99999999996 45667888899988865443
No 163
>KOG0701|consensus
Probab=96.35 E-value=0.0015 Score=75.25 Aligned_cols=97 Identities=32% Similarity=0.452 Sum_probs=78.6
Q ss_pred cEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCC--------CCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC
Q psy4150 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSS--------GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGE 193 (395)
Q Consensus 122 r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~--------~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~ 193 (395)
..|+||+.+..+..+.+.+.+.+. ..+..+.|-.+ ......+.+++..|....+++|++|.++.+|+|++.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFS-NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhc-cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 469999999999999988877542 33333555221 112334778999999999999999999999999999
Q ss_pred CCEEEEcCCCCChhhHhhhccccccc
Q psy4150 194 IDLVICFDAQKSPIKMVQRLGRTGRK 219 (395)
Q Consensus 194 v~~VI~~d~p~s~~~yiQr~GRagR~ 219 (395)
|+.|+.++.|....+|+|+.||+-+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999998554
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.28 E-value=0.056 Score=55.40 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
+++.+.+-+.-.+.. .....++|||+++--.--.|.++|++.+ +....+|- ..++.+-..+-..|..|+..|
T Consensus 282 Rf~yF~~~iLP~l~~---~~~~~~~LIfIPSYfDfVRlRN~lk~~~--~sF~~i~E---Yts~~~isRAR~~F~~G~~~i 353 (442)
T PF06862_consen 282 RFKYFTKKILPQLKR---DSKMSGTLIFIPSYFDFVRLRNYLKKEN--ISFVQISE---YTSNSDISRARSQFFHGRKPI 353 (442)
T ss_pred HHHHHHHHHHHHhhh---ccCCCcEEEEecchhhhHHHHHHHHhcC--CeEEEecc---cCCHHHHHHHHHHHHcCCceE
Confidence 555555533333331 2457899999999999999999999877 88888888 678888888999999999999
Q ss_pred EEEcCcc--ccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-------CceEEEEEeC
Q psy4150 179 LIATSVG--EEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-------NGRCVILLTQ 230 (395)
Q Consensus 179 LVaT~v~--~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-------~g~~i~l~~~ 230 (395)
|+.|-=+ =+=..|-+|..||.|.+|..+.-|-.-++-.+... ...+.++++.
T Consensus 354 LL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 354 LLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred EEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 9999421 12345678999999999999988877665444432 4667777765
No 165
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.05 E-value=0.049 Score=59.25 Aligned_cols=98 Identities=10% Similarity=0.134 Sum_probs=79.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.++.|......++...+.. +.++||.++++..+..+.+.|.+..+ ..+..+|| +++..+|...+.++..|
T Consensus 171 TGSGKT~v~l~~i~~~l~~------g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v~~~~s---~~s~~~r~~~~~~~~~g 240 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQ------GKQALVLVPEIALTPQMLARFRARFG-APVAVLHS---GLSDGERLDEWRKAKRG 240 (679)
T ss_pred CCChHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHHhC-CCEEEEEC---CCCHHHHHHHHHHHHcC
Confidence 3566888877777665543 57899999999999999999987532 78899999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCC
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p 203 (395)
..+|+|+|..+. -+.+.++.+||.-+..
T Consensus 241 ~~~IVVgTrsal-~~p~~~l~liVvDEeh 268 (679)
T PRK05580 241 EAKVVIGARSAL-FLPFKNLGLIIVDEEH 268 (679)
T ss_pred CCCEEEeccHHh-cccccCCCEEEEECCC
Confidence 999999996432 2567788888877654
No 166
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.05 E-value=0.044 Score=57.46 Aligned_cols=97 Identities=15% Similarity=0.188 Sum_probs=77.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.++.|......++...+.. +.++||.+++...+..+++.|++..+ ..+..+|| +++..+|..++.+...|
T Consensus 6 TGsGKT~v~l~~i~~~l~~------g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs---~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLAL------GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHS---GLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CCCCHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEEC---CCCHHHHHHHHHHHHcC
Confidence 3556887777777665543 57899999999999999999987532 67889999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCC
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDA 202 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~ 202 (395)
+.+|+|+|..+-- +.+.++.+||.-+.
T Consensus 76 ~~~IVVGTrsalf-~p~~~l~lIIVDEe 102 (505)
T TIGR00595 76 EILVVIGTRSALF-LPFKNLGLIIVDEE 102 (505)
T ss_pred CCCEEECChHHHc-CcccCCCEEEEECC
Confidence 9999999965432 45678888886654
No 167
>KOG1016|consensus
Probab=96.04 E-value=0.0048 Score=65.79 Aligned_cols=115 Identities=21% Similarity=0.273 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC----------------CCceeEEeccCCCCCH
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP----------------MVKASMFVGQSSGVTQ 161 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~----------------~~~~~~lhg~~~~~~~ 161 (395)
+|.-.+++++.+.. .-+.++|||...-...+.|.++|.+..- ...-..+.| ..+.
T Consensus 703 pk~V~~~~~~des~------~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG---~t~a 773 (1387)
T KOG1016|consen 703 PKIVISLEILDEST------QIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDG---TTSA 773 (1387)
T ss_pred CceEEEEeeecccc------ccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccC---Cccc
Confidence 44444444444432 2378999999999999999999987530 011223444 6778
Q ss_pred HHHHHHHHHHhcC---CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC
Q psy4150 162 QEQKEIMKKFRAG---EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221 (395)
Q Consensus 162 ~~R~~~l~~Fk~g---~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~ 221 (395)
.+|++.+++|.+. ..-+|++|-.+.-||++-..+.+|.||+.|++.--.|.+-|+-|.|+
T Consensus 774 ~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ 836 (1387)
T KOG1016|consen 774 ADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQ 836 (1387)
T ss_pred chHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcC
Confidence 8999999999874 33578999999999999999999999999999999999999988874
No 168
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.85 E-value=0.048 Score=58.82 Aligned_cols=81 Identities=16% Similarity=0.380 Sum_probs=67.8
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-ccccCCCCCCCCE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-VGEEGLDIGEIDL 196 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-v~~~GlDip~v~~ 196 (395)
+.+++|-++|+.-|..+++.+.+..+ ++++..+|| +++..+|..+++.+.+|+++|+|+|. .+..++++..+.+
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg---~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~l 360 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTG---SLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLAL 360 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEec---CCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccce
Confidence 57999999999999988887766432 389999999 99999999999999999999999995 4555678888888
Q ss_pred EEEcCCC
Q psy4150 197 VICFDAQ 203 (395)
Q Consensus 197 VI~~d~p 203 (395)
||.=...
T Consensus 361 vVIDEaH 367 (630)
T TIGR00643 361 VIIDEQH 367 (630)
T ss_pred EEEechh
Confidence 8865543
No 169
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.40 E-value=0.078 Score=57.35 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=80.6
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
++.|.+.+++++...+.. +.++||.++....+..+.+.|....+...+..+|+ +++..+|.+.+...++|+
T Consensus 170 GSGKTevyl~~i~~~l~~------Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS---~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA------GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSA---GLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred CCcHHHHHHHHHHHHHHc------CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECC---CCCHHHHHHHHHHHhCCC
Confidence 568999999999887764 67899999999999999999998765456888999 999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCCCEEEEcCC
Q psy4150 176 FNTLIATSVGEEGLDIGEIDLVICFDA 202 (395)
Q Consensus 176 ~~vLVaT~v~~~GlDip~v~~VI~~d~ 202 (395)
.+|+|+|-.+- =+-+++..+||..+=
T Consensus 241 ~~IViGtRSAv-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 241 ARVVVGTRSAV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred CcEEEEcceeE-EeccCCCCEEEEEcC
Confidence 99999996532 244556777776553
No 170
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.27 E-value=0.1 Score=58.48 Aligned_cols=99 Identities=16% Similarity=0.196 Sum_probs=75.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.......+..... .+.+++|.|+|+..|...++.+.+... .+++..++| ..+..++..+++.++
T Consensus 481 TGsGKT~val~a~l~al~------~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg---~~~~~e~~~~~~~l~ 551 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVL------DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSR---FRSAKEQNEILKELA 551 (926)
T ss_pred CCccHHHHHHHHHHHHHH------hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEec---cccHHHHHHHHHHHH
Confidence 355577654433333322 247999999999999999988776432 267788998 889999999999999
Q ss_pred cCCccEEEEcC-ccccCCCCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATS-VGEEGLDIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~-v~~~GlDip~v~~VI~~d~ 202 (395)
.|.++|+|+|. ++...+.+.++.+||.-..
T Consensus 552 ~g~~dIVIGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 552 SGKIDILIGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred cCCceEEEchHHHhhCCCCcccCCEEEeecc
Confidence 99999999995 5666788888988886443
No 171
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.47 E-value=0.22 Score=57.17 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.......+..... .+.+++|.|+|+..|..+++.+.+... .+++..++| ..+..++..+++.++
T Consensus 630 TGsGKT~val~aa~~~~~------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g---~~s~~e~~~il~~l~ 700 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVE------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSR---FRSAKEQTQILAEAA 700 (1147)
T ss_pred CCcCHHHHHHHHHHHHHH------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEEC---CCCHHHHHHHHHHHH
Confidence 455677644322222222 258999999999999999988876432 267778888 889999999999999
Q ss_pred cCCccEEEEcC-ccccCCCCCCCCEEEEc
Q psy4150 173 AGEFNTLIATS-VGEEGLDIGEIDLVICF 200 (395)
Q Consensus 173 ~g~~~vLVaT~-v~~~GlDip~v~~VI~~ 200 (395)
.|.++|+|+|. ++..++.+..+.+||.=
T Consensus 701 ~g~~dIVVgTp~lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 701 EGKIDILIGTHKLLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred hCCCCEEEECHHHHhCCCCHhhCCEEEEe
Confidence 99999999995 55566777788888753
No 172
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=94.28 E-value=0.34 Score=51.74 Aligned_cols=87 Identities=20% Similarity=0.408 Sum_probs=69.8
Q ss_pred CCccEEEEcCcHHHHHHH----HHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-ccccCCCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEI----FDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-VGEEGLDIGE 193 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l----~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-v~~~GlDip~ 193 (395)
.+.++.+-++|---|+.. .++|...| +++..+.| .+...+|.+++....+|+++++|+|- +....+++.+
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~--i~V~lLtG---~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~ 384 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLG--IRVALLTG---SLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHN 384 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcC--CeEEEeec---ccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecc
Confidence 478999999996655554 45555556 99999999 99999999999999999999999994 5688999998
Q ss_pred CCEEEEcCCCCChhhHhhhcccccc
Q psy4150 194 IDLVICFDAQKSPIKMVQRLGRTGR 218 (395)
Q Consensus 194 v~~VI~~d~p~s~~~yiQr~GRagR 218 (395)
.-+||.- =.||.|=.-|
T Consensus 385 LgLVIiD--------EQHRFGV~QR 401 (677)
T COG1200 385 LGLVIID--------EQHRFGVHQR 401 (677)
T ss_pred eeEEEEe--------ccccccHHHH
Confidence 8888863 3455554444
No 173
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.11 Score=56.59 Aligned_cols=94 Identities=16% Similarity=0.195 Sum_probs=77.8
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
..++.|.+.+++++...+.. +.++||-++.......+.+.|+.+.. .++..+|+ ++++.+|...+.+.++
T Consensus 225 vTGSGKTEvYl~~i~~~L~~------GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~vlHS---~Ls~~er~~~W~~~~~ 294 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQ------GKQVLVLVPEIALTPQLLARFKARFG-AKVAVLHS---GLSPGERYRVWRRARR 294 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHc------CCEEEEEeccccchHHHHHHHHHHhC-CChhhhcc---cCChHHHHHHHHHHhc
Confidence 35678999999999998875 68999999999988888888887654 78999999 9999999999999999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEE
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
|+.+|+|+|-.+- =.=+++..+||
T Consensus 295 G~~~vVIGtRSAl-F~Pf~~LGLII 318 (730)
T COG1198 295 GEARVVIGTRSAL-FLPFKNLGLII 318 (730)
T ss_pred CCceEEEEechhh-cCchhhccEEE
Confidence 9999999995431 23344555555
No 174
>KOG0921|consensus
Probab=94.13 E-value=0.053 Score=59.07 Aligned_cols=109 Identities=22% Similarity=0.307 Sum_probs=86.5
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccC-----CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLE-----PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIG 192 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~-----~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip 192 (395)
.-.+-++||-.-....-.|..+|..+. .......+|+ .....+..++.+....|..++++.|++++.-+.+.
T Consensus 641 ~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hs---q~~~~eqrkvf~~~p~gv~kii~stniaetsiTid 717 (1282)
T KOG0921|consen 641 NIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHS---QLTSQEQRKVFEPVPEGVTKIILSTNIAETSITID 717 (1282)
T ss_pred CCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchh---hcccHhhhhccCcccccccccccccceeeEeeeec
Confidence 346778999999999999988887653 1234455566 78888888899988899999999999999999999
Q ss_pred CCCEEEEcCCC------------------CChhhHhhhccccccccCceEEEEEe
Q psy4150 193 EIDLVICFDAQ------------------KSPIKMVQRLGRTGRKRNGRCVILLT 229 (395)
Q Consensus 193 ~v~~VI~~d~p------------------~s~~~yiQr~GRagR~~~g~~i~l~~ 229 (395)
++..||..+.- .+....+||.||+||.+.|.+..++.
T Consensus 718 d~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs 772 (1282)
T KOG0921|consen 718 DVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCS 772 (1282)
T ss_pred ceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccH
Confidence 88777754432 15678899999999999998887654
No 175
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.47 E-value=0.35 Score=52.82 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=72.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCC--CEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEI--DLV 197 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v--~~V 197 (395)
+.++-||+.|...++.+++...... -++..++| .-+..+ + +. =++++|++=|+++.-|+++.+. +-|
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~~--~~Vl~l~s---~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARFT--KKVLVLNS---TDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhcC--CeEEEEcC---CCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEE
Confidence 6888899999999999999998876 67777777 333331 1 11 2579999999999999999753 445
Q ss_pred EEc--CCC--CChhhHhhhccccccccCceEEEEEeC
Q psy4150 198 ICF--DAQ--KSPIKMVQRLGRTGRKRNGRCVILLTQ 230 (395)
Q Consensus 198 I~~--d~p--~s~~~yiQr~GRagR~~~g~~i~l~~~ 230 (395)
..| ... .+..+..|.+||+-.-....+++++..
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~ei~v~~d~ 387 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSLLDNEIYVYIDA 387 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhhccCeEEEEEec
Confidence 544 222 356679999999933367777766544
No 176
>PRK07883 hypothetical protein; Validated
Probab=93.32 E-value=0.067 Score=56.80 Aligned_cols=38 Identities=11% Similarity=0.151 Sum_probs=34.7
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcC
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSG 367 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~ 367 (395)
+.+.+|+++|..||+.|+ ||.||++||+|..|+.....
T Consensus 406 ~~~~~l~~~M~~aa~~l~--FE~Aa~~Rd~i~~l~~~~~~ 443 (557)
T PRK07883 406 AVLAALRARIDRLAAAER--FEEAARLRDRLAALLRALAR 443 (557)
T ss_pred HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999 99999999999999976544
No 177
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=92.97 E-value=0.21 Score=52.53 Aligned_cols=70 Identities=24% Similarity=0.473 Sum_probs=57.0
Q ss_pred EEEEcCcHHHHHHHHHHHcccCC---CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-CCCCC
Q psy4150 123 VIIFANYRVVVAEIFDVLKPLEP---MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEEG-LDIGE 193 (395)
Q Consensus 123 ~iVF~~t~~~ae~l~~~L~~~~~---~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~G-lDip~ 193 (395)
+||+++||+.|..+++.+...+. .+++..++| +++...+...+ +.| .+|||||+ .+.+| +|+..
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~G---G~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~ 174 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYG---GVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSG 174 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEEC---CCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhh
Confidence 99999999999999998876542 477899999 88887776444 446 99999997 56676 88889
Q ss_pred CCEEEE
Q psy4150 194 IDLVIC 199 (395)
Q Consensus 194 v~~VI~ 199 (395)
|.++|.
T Consensus 175 v~~lVl 180 (513)
T COG0513 175 VETLVL 180 (513)
T ss_pred cCEEEe
Confidence 988884
No 178
>PRK00558 uvrC excinuclease ABC subunit C; Validated
Probab=92.95 E-value=0.074 Score=56.89 Aligned_cols=38 Identities=13% Similarity=0.207 Sum_probs=35.3
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcC
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSG 367 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~ 367 (395)
+.+..++++|..||++|+ ||.||.+||+|..|+.....
T Consensus 202 ~~i~~L~~~M~~aa~~l~--FE~Aa~~RD~i~aL~~~~~~ 239 (598)
T PRK00558 202 EVLKELEEKMEEASENLE--FERAARYRDQIQALRRVQEK 239 (598)
T ss_pred HHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999 99999999999999987654
No 179
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.90 E-value=0.28 Score=54.53 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=51.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC-----CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE-----PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV 184 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~-----~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v 184 (395)
.+.|+++-++|..-+...++.|.+.. ..+... +|| .|+..++.+++++|.+|.++|||+|+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~---~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHS---ALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-ecc---ccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 46899999999988888888776543 223333 777 999999999999999999999999974
No 180
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=92.09 E-value=0.47 Score=53.60 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=68.0
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCC--CceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEc-CccccCCCCCCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPM--VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT-SVGEEGLDIGEI 194 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~--~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT-~v~~~GlDip~v 194 (395)
..+.+|.|.|+|.--|+.-++.+.++..+ +++..+.. =.+..+..++++.+++|+++|+|+| .+++.+|-+.++
T Consensus 641 ~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSR---F~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdL 717 (1139)
T COG1197 641 MDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSR---FRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDL 717 (1139)
T ss_pred cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecc---cCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecC
Confidence 34799999999999999999988886533 56666666 6789999999999999999999999 789999999999
Q ss_pred CEEEE
Q psy4150 195 DLVIC 199 (395)
Q Consensus 195 ~~VI~ 199 (395)
-+||.
T Consensus 718 GLlII 722 (1139)
T COG1197 718 GLLII 722 (1139)
T ss_pred CeEEE
Confidence 98884
No 181
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=91.53 E-value=0.11 Score=54.38 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=34.1
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
+.+..++++|..||+.|+ ||.||++||++..|+....
T Consensus 192 ~~~~~L~~~M~~aa~~l~--FE~Aa~~RD~l~~l~~~~~ 228 (519)
T PRK12306 192 ELIEKLEEEMAEKAKNQQ--FERALVIRDEINAIENLQE 228 (519)
T ss_pred HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHh
Confidence 688899999999999999 9999999999999997554
No 182
>TIGR00194 uvrC excinuclease ABC, C subunit. This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.
Probab=91.43 E-value=0.12 Score=54.94 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=34.7
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcC
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSG 367 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~ 367 (395)
+.+..++.+|..||+.|+ ||.||++||+|..|+.....
T Consensus 194 ~~~~~L~~~M~~aa~~l~--FE~Aa~~Rd~i~~l~~~~~~ 231 (574)
T TIGR00194 194 EVIKELEQKMEKASENLE--FEEAARIRDQIAAVRELNEK 231 (574)
T ss_pred HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHhc
Confidence 688899999999999999 99999999999999976553
No 183
>PRK14671 uvrC excinuclease ABC subunit C; Provisional
Probab=91.34 E-value=0.11 Score=55.85 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=34.0
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
+.+..++++|..||+.|+ ||.||++||+|..|+....
T Consensus 215 ~l~~~L~~~M~~as~~l~--FE~Aa~~RD~i~~l~~~~~ 251 (621)
T PRK14671 215 ALIRSLTEEMQRAAAELK--FEEAAELKDQIESLKRYAE 251 (621)
T ss_pred HHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999 9999999999999986544
No 184
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=91.19 E-value=0.11 Score=55.19 Aligned_cols=37 Identities=19% Similarity=0.093 Sum_probs=34.5
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
+.+..|+++|..||++|+ ||.||++||++..|+....
T Consensus 177 ~~~~~L~~~M~~aa~~l~--FE~Aa~~RD~i~al~~~~~ 213 (574)
T PRK14670 177 KLLSQIEIKMKEAIQKED--FEAAIKLKETKRSLIEISQ 213 (574)
T ss_pred HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh
Confidence 688899999999999999 9999999999999998665
No 185
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.16 E-value=1.4 Score=45.13 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=56.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC------ccccCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS------VGEEGLD 190 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~------v~~~GlD 190 (395)
...++||.++|+..+..+++.+.... ..+.+..++| +.+...+...+ .+..+|||||. +....++
T Consensus 72 ~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~g---g~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~ 144 (434)
T PRK11192 72 GPPRILILTPTRELAMQVADQARELAKHTHLDIATITG---GVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFD 144 (434)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEEC---CCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcC
Confidence 34689999999999988877655432 1278899999 88777665444 35688999996 2235678
Q ss_pred CCCCCEEEEcCC
Q psy4150 191 IGEIDLVICFDA 202 (395)
Q Consensus 191 ip~v~~VI~~d~ 202 (395)
+..+++||.=++
T Consensus 145 ~~~v~~lViDEa 156 (434)
T PRK11192 145 CRAVETLILDEA 156 (434)
T ss_pred cccCCEEEEECH
Confidence 888888886544
No 186
>PRK14669 uvrC excinuclease ABC subunit C; Provisional
Probab=91.15 E-value=0.11 Score=55.56 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=34.8
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcC
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSG 367 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~ 367 (395)
+.+..|+++|..||++|+ ||.||++||+|..|+.....
T Consensus 203 ~l~~~L~~~M~~aa~~l~--FE~Aa~~RD~i~~l~~~~~~ 240 (624)
T PRK14669 203 DLARSLRARMEAAALEMQ--FELAAKYRDLITTVEELEEK 240 (624)
T ss_pred HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhc
Confidence 688899999999999999 99999999999999876553
No 187
>PRK14667 uvrC excinuclease ABC subunit C; Provisional
Probab=91.10 E-value=0.11 Score=54.97 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=34.6
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcC
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSG 367 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~ 367 (395)
+.+..|+++|..||++|+ ||.||.+||++..|+.....
T Consensus 199 ~l~~~L~~~M~~aa~~l~--FE~Aa~~RD~i~~l~~~~~~ 236 (567)
T PRK14667 199 EVLPELYDKIEEYSQKLM--FEKAAVIRDQILALENLIKG 236 (567)
T ss_pred HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999 99999999999999876553
No 188
>PRK14666 uvrC excinuclease ABC subunit C; Provisional
Probab=91.06 E-value=0.13 Score=55.48 Aligned_cols=37 Identities=11% Similarity=0.116 Sum_probs=34.5
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
+.+..|+++|..||+.|+ ||.||++||+|..|+....
T Consensus 201 ~l~~~L~~~M~~AAe~l~--FE~AA~lRD~i~aL~~~~~ 237 (694)
T PRK14666 201 ELVDALRTEMEAASEALE--FERAAVLRDQIRAVERTVE 237 (694)
T ss_pred HHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999 9999999999999997655
No 189
>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]
Probab=90.89 E-value=0.22 Score=43.94 Aligned_cols=38 Identities=11% Similarity=0.134 Sum_probs=32.7
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcC
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSG 367 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~ 367 (395)
..|..|.+.+.+.-..-+ ||+||-+||||..|+++.-+
T Consensus 136 ~~I~~L~e~Lq~~i~~Ee--fEeAA~iRDqIr~Lk~k~~~ 173 (176)
T COG3880 136 RKIIALKEALQDLIEREE--FEEAAVIRDQIRALKAKNGG 173 (176)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCC
Confidence 467778888888888889 99999999999999988533
No 190
>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]
Probab=90.79 E-value=0.17 Score=53.65 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=37.2
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhcCCCCC
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSSGEPVS 371 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~~~~~~ 371 (395)
+.+..|++.|..||..|+ ||.||++||+|.-|.........+
T Consensus 202 ~v~~~L~~~M~~As~~l~--FE~Aa~~RD~i~al~~l~~~q~v~ 243 (581)
T COG0322 202 AVLQELEEKMEEASENLD--FERAARLRDQIKALEKLQEKQAVS 243 (581)
T ss_pred HHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHhccccc
Confidence 688899999999999999 999999999999999877654443
No 191
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=90.57 E-value=0.14 Score=55.04 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=33.8
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
+.+..++++|..||+.|+ ||.||++||+|..|+....
T Consensus 205 ~ll~~L~~~M~~AA~~l~--FE~AA~lRD~i~aL~~~~~ 241 (691)
T PRK14672 205 ATVARLEKRMKRAVRQEA--FEAAARIRDDIQAIRCITH 241 (691)
T ss_pred HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999 9999999999999986544
No 192
>PRK14668 uvrC excinuclease ABC subunit C; Provisional
Probab=90.16 E-value=0.19 Score=53.54 Aligned_cols=37 Identities=8% Similarity=0.074 Sum_probs=34.0
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
..+..++.+|..||+.|+ ||.||++||+|..|+....
T Consensus 199 ~~~~~l~~~m~~aa~~l~--FE~Aa~~Rd~i~~l~~~~~ 235 (577)
T PRK14668 199 VLADPLRREMEAAAQAQE--FERAANLRDRLEAVEAFHG 235 (577)
T ss_pred HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999 9999999999999997654
No 193
>PRK14701 reverse gyrase; Provisional
Probab=90.07 E-value=0.76 Score=54.63 Aligned_cols=62 Identities=16% Similarity=0.366 Sum_probs=53.9
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccC----CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLE----PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV 184 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~----~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v 184 (395)
+.++||.++|+..+..+++.|...+ ..+.+.++|| +++..++.++++.++.|..+|||+|+-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g---~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHS---NLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeC---CCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 5689999999999999998887643 1367788999 999999999999999999999999974
No 194
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.96 E-value=3.3 Score=37.19 Aligned_cols=100 Identities=23% Similarity=0.236 Sum_probs=61.9
Q ss_pred ccccHHHH-HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIR-LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~-L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|... +..++...... ....+.++||.|+++..+......+...+. .+.+..++| +.+..+....+.
T Consensus 45 TG~GKT~~~~~~~l~~~~~~--~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 117 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPS--PKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYG---GTSIDKQIRKLK-- 117 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhh--cccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEEC---CCCHHHHHHHhc--
Confidence 45556544 33444332221 002456899999999999888776655421 377888888 777665543332
Q ss_pred hcCCccEEEEcCc-----ccc-CCCCCCCCEEEEcCCC
Q psy4150 172 RAGEFNTLIATSV-----GEE-GLDIGEIDLVICFDAQ 203 (395)
Q Consensus 172 k~g~~~vLVaT~v-----~~~-GlDip~v~~VI~~d~p 203 (395)
+.+.|+|||.- +.. -.+++.++++|.=++.
T Consensus 118 --~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h 153 (203)
T cd00268 118 --RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEAD 153 (203)
T ss_pred --CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChH
Confidence 67899999952 222 2566778877754443
No 195
>KOG0331|consensus
Probab=89.94 E-value=2 Score=44.93 Aligned_cols=94 Identities=19% Similarity=0.359 Sum_probs=71.9
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCC--CceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-C
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPM--VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEEG-L 189 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~--~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~G-l 189 (395)
..+.++||-++||+.|..+...+.+.+.. +++.++.| +.+...+..-++. .++|+|||+ .++.| +
T Consensus 163 ~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyG---G~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~ 235 (519)
T KOG0331|consen 163 GDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYG---GAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSL 235 (519)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeC---CCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCc
Confidence 34677999999999999999998887643 55899999 8877766555542 478999995 56676 7
Q ss_pred CCCCCCEEEEcCCC--------CChhhHhhhcccccc
Q psy4150 190 DIGEIDLVICFDAQ--------KSPIKMVQRLGRTGR 218 (395)
Q Consensus 190 Dip~v~~VI~~d~p--------~s~~~yiQr~GRagR 218 (395)
|+..|.++|.=.+. ......+++++|.-|
T Consensus 236 ~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 236 NLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred cccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 88889988854333 356778888888866
No 196
>KOG1513|consensus
Probab=89.60 E-value=0.48 Score=51.39 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=60.9
Q ss_pred HHHhcCCccEEEEcCccccCCCCCCCCEE--------EEcCCCCChhhHhhhcccccccc---CceEEEEEeCCchhhHH
Q psy4150 169 KKFRAGEFNTLIATSVGEEGLDIGEIDLV--------ICFDAQKSPIKMVQRLGRTGRKR---NGRCVILLTQGREAHNF 237 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT~v~~~GlDip~v~~V--------I~~d~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~e~~~~ 237 (395)
++|-+|+-.|-|-+..++-||-+..-..| |-+.+|||...-||..|||-|.. ...+++++++-..+..|
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErRF 930 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERRF 930 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchHH
Confidence 46889999998889999999999865555 56889999999999999999983 34556677776667777
Q ss_pred HHHHHHhHH
Q psy4150 238 QTSMQTCKS 246 (395)
Q Consensus 238 ~~~~~~~~~ 246 (395)
.....+..+
T Consensus 931 AS~VAKRLE 939 (1300)
T KOG1513|consen 931 ASIVAKRLE 939 (1300)
T ss_pred HHHHHHHHH
Confidence 666544333
No 197
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.47 E-value=1.7 Score=44.85 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=66.0
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..+..|.....--+...+.. .....++||.|+|+..|..+++.++..+ +.+++..++| +.+...+...++
T Consensus 49 ~TGsGKT~a~~lpil~~l~~---~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~G---g~~~~~~~~~l~- 121 (460)
T PRK11776 49 KTGSGKTAAFGLGLLQKLDV---KRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCG---GVPMGPQIDSLE- 121 (460)
T ss_pred CCCCcHHHHHHHHHHHHhhh---ccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC---CCChHHHHHHhc-
Confidence 34556775533333333321 1223479999999999999988777542 3478888999 888776654443
Q ss_pred HhcCCccEEEEcC-----ccc-cCCCCCCCCEEEEcCC
Q psy4150 171 FRAGEFNTLIATS-----VGE-EGLDIGEIDLVICFDA 202 (395)
Q Consensus 171 Fk~g~~~vLVaT~-----v~~-~GlDip~v~~VI~~d~ 202 (395)
+..+|+|||+ .+. ..+++.++.+||.-++
T Consensus 122 ---~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEa 156 (460)
T PRK11776 122 ---HGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEA 156 (460)
T ss_pred ---CCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECH
Confidence 5689999994 333 4578888998885444
No 198
>KOG0298|consensus
Probab=89.40 E-value=0.56 Score=53.15 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=85.1
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE-EEEcCccccCCCCCCCCE
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT-LIATSVGEEGLDIGEIDL 196 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v-LVaT~v~~~GlDip~v~~ 196 (395)
+...++|||+.--...+-+...+.-++ +.....-+ .+.-...+..|++ +++ |+-+...+-|+++-+..+
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~--I~~~~~~~------t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~H 1288 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNL--IKKQLDGE------TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATH 1288 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhh--hHhhhccC------Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhh
Confidence 346899999999888888887776666 55443322 3334557777777 555 477888999999999999
Q ss_pred EEEcCCCCChhhHhhhccccccccC---ceEEEEEeCCchhhHHHHHH
Q psy4150 197 VICFDAQKSPIKMVQRLGRTGRKRN---GRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 197 VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~~~~~e~~~~~~~~ 241 (395)
|+..++--++..-.|.+||..|.|+ ..+.-++..++.+..+..+.
T Consensus 1289 vfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~ 1336 (1394)
T KOG0298|consen 1289 VFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLI 1336 (1394)
T ss_pred hheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHh
Confidence 9999999999999999999999974 33455666666666554433
No 199
>KOG0347|consensus
Probab=89.07 E-value=0.74 Score=48.09 Aligned_cols=54 Identities=17% Similarity=0.391 Sum_probs=47.9
Q ss_pred EEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 123 VIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 123 ~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
.|||++||+.|..+.++|.... +.+++..+.| ||+...++++++. .-+|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~G---GLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITG---GLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeec---hhHHHHHHHHHhc----CCCEEEecc
Confidence 8999999999999999997643 3599999999 9999999999987 578999997
No 200
>KOG0951|consensus
Probab=88.66 E-value=1.9 Score=49.26 Aligned_cols=110 Identities=19% Similarity=0.336 Sum_probs=75.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC----------------CCCceeEEecc-CCCCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE----------------PMVKASMFVGQ-SSGVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~----------------~~~~~~~lhg~-~~~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
...+.+||+++++.|..++.-|-... ...+...-||- |.+++.....-+-.-|..|.+.|+|.
T Consensus 1358 ~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~ 1437 (1674)
T KOG0951|consen 1358 NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVM 1437 (1674)
T ss_pred CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEE
Confidence 36899999999999988776543211 01122222221 22888888888888899999999988
Q ss_pred cCccccCCCCCCCCEEEE-----cCC------CCChhhHhhhccccccccCceEEEEEeCCc
Q psy4150 182 TSVGEEGLDIGEIDLVIC-----FDA------QKSPIKMVQRLGRTGRKRNGRCVILLTQGR 232 (395)
Q Consensus 182 T~v~~~GlDip~v~~VI~-----~d~------p~s~~~yiQr~GRagR~~~g~~i~l~~~~~ 232 (395)
..- ..|+-.. .++||. ||. +-+...+.|++|+|.| .|++++++....
T Consensus 1438 s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~ 1495 (1674)
T KOG0951|consen 1438 SRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG--AGKCVIMCHTPK 1495 (1674)
T ss_pred Ecc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC--CccEEEEecCch
Confidence 765 7777764 344442 443 2357889999999987 577887766554
No 201
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=88.50 E-value=1.5 Score=50.69 Aligned_cols=61 Identities=21% Similarity=0.428 Sum_probs=51.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCC--Cce---eEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPM--VKA---SMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~--~~~---~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
+.++||.++|+..|..+++.+...... +.+ .++|| +++..++...++.+++|..+|||+|+
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~G---g~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHS---RLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecC---CCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 578999999999999999888765421 332 35788 99999999999999999999999996
No 202
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.21 E-value=1.5 Score=45.61 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=62.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCcc-cc------CC-CC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVG-EE------GL-DI 191 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~-~~------Gl-Di 191 (395)
...+||.++++..+......|...| +.+..++| +.+..++..++..++.|.+++|++|+-. .. .+ ..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~g--i~~~~l~~---~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~ 125 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASG--IPATFLNS---SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEER 125 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcC--CcEEEEeC---CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhc
Confidence 4689999999999999999998888 88999999 8899999999999999999999999632 11 12 44
Q ss_pred CCCCEEEEcCC
Q psy4150 192 GEIDLVICFDA 202 (395)
Q Consensus 192 p~v~~VI~~d~ 202 (395)
..+.+||.-.+
T Consensus 126 ~~i~~iViDEa 136 (470)
T TIGR00614 126 KGITLIAVDEA 136 (470)
T ss_pred CCcCEEEEeCC
Confidence 56666665443
No 203
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.41 E-value=1.3 Score=47.29 Aligned_cols=76 Identities=17% Similarity=0.305 Sum_probs=55.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----cccc--CCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEE--GLD 190 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~--GlD 190 (395)
..++||.++|+..|..+++.+...+. .+++..+|| +.+...+...+. +..+|||+|. .+.. .++
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~G---g~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~ 156 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYG---GVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVS 156 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEEC---CCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccc
Confidence 46899999999999998887766432 377889999 888776655543 4689999995 3333 367
Q ss_pred CCCCCEEEEcCC
Q psy4150 191 IGEIDLVICFDA 202 (395)
Q Consensus 191 ip~v~~VI~~d~ 202 (395)
+..+.+||.-.+
T Consensus 157 l~~v~~lViDEA 168 (572)
T PRK04537 157 LHACEICVLDEA 168 (572)
T ss_pred hhheeeeEecCH
Confidence 777887775443
No 204
>KOG2340|consensus
Probab=87.27 E-value=2.6 Score=43.94 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=84.6
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
..+..+..-|.-.+.. ....-+||+.++--.--.+.+++++.. +..+.+|- --+...-.++-.-|-.|...
T Consensus 534 ~RFkyFv~~ImPq~~k----~t~s~~LiyIPSYfDFVRvRNy~K~e~--i~F~~i~E---Yssk~~vsRAR~lF~qgr~~ 604 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIK----RTESGILIYIPSYFDFVRVRNYMKKEE--ISFVMINE---YSSKSKVSRARELFFQGRKS 604 (698)
T ss_pred HHHHHHHHhhchhhcc----cccCceEEEecchhhHHHHHHHhhhhh--cchHHHhh---hhhHhhhhHHHHHHHhcCce
Confidence 3555555444333322 335678999999999999999999887 66666665 23344444555668899999
Q ss_pred EEEEcCcc--ccCCCCCCCCEEEEcCCCCChhhH---hhhccccccccC-----ceEEEEEeC
Q psy4150 178 TLIATSVG--EEGLDIGEIDLVICFDAQKSPIKM---VQRLGRTGRKRN-----GRCVILLTQ 230 (395)
Q Consensus 178 vLVaT~v~--~~GlDip~v~~VI~~d~p~s~~~y---iQr~GRagR~~~-----g~~i~l~~~ 230 (395)
||+-|.-+ =+--+|.+|.-||.|.+|.+|.-| +-.+||+.-.|. -.|.++++.
T Consensus 605 vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 605 VLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred EEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 99999533 355788999999999999998666 446666654441 234556554
No 205
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=87.17 E-value=3.4 Score=44.64 Aligned_cols=96 Identities=14% Similarity=0.170 Sum_probs=61.9
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc---CCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL---EPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~---~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
.....|...+.--+.+.+.. .....++||.|+|+..|..+++.+... .+.+.+..+|| +.+...+...+
T Consensus 51 pTGsGKT~af~lpll~~l~~---~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~g---G~~~~~q~~~l-- 122 (629)
T PRK11634 51 QTGSGKTAAFSLPLLHNLDP---ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG---GQRYDVQLRAL-- 122 (629)
T ss_pred CCCCcHHHHHHHHHHHHhhh---ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEEC---CcCHHHHHHHh--
Confidence 34556766543222222221 123468999999999999988876653 23478888898 77766554433
Q ss_pred HhcCCccEEEEcC-----ccccC-CCCCCCCEEEE
Q psy4150 171 FRAGEFNTLIATS-----VGEEG-LDIGEIDLVIC 199 (395)
Q Consensus 171 Fk~g~~~vLVaT~-----v~~~G-lDip~v~~VI~ 199 (395)
+ +..+|+|+|+ .+.++ +++..+.+||.
T Consensus 123 -~-~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 123 -R-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred -c-CCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 2 4578999994 34444 77888887774
No 206
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=86.58 E-value=2.3 Score=40.17 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=63.7
Q ss_pred HHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC----ccEEEEcCccccCCCCCCCCEEEEcCCCCChhh
Q psy4150 133 VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE----FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208 (395)
Q Consensus 133 ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~----~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~ 208 (395)
...|...+.. + +.+..+.| +.+... -++..+. ..|+|+=+.++||+.+++..+......+.+..+
T Consensus 100 ~~~l~~~~~~-~--~~v~~vNS---~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DT 168 (239)
T PF10593_consen 100 KPELPKAISD-G--IEVVVVNS---GSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDT 168 (239)
T ss_pred HHHHHHHHhc-C--ceEEEEeC---CCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHH
Confidence 3444444444 4 88888887 332222 3445543 889999999999999999999999999998888
Q ss_pred Hhhhccccc-cccCceEEEEEeCCchhhHHHHHH
Q psy4150 209 MVQRLGRTG-RKRNGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 209 yiQr~GRag-R~~~g~~i~l~~~~~e~~~~~~~~ 241 (395)
++||.-.-| |.|=...+-++.+.+-.+.|....
T Consensus 169 L~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~ 202 (239)
T PF10593_consen 169 LMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIA 202 (239)
T ss_pred HHHHhhcccCCcccccceEEecCHHHHHHHHHHH
Confidence 888754443 224233444555555455554333
No 207
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=85.91 E-value=6.9 Score=33.60 Aligned_cols=92 Identities=14% Similarity=0.134 Sum_probs=47.9
Q ss_pred eeeeccccHH-HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 91 SEYAWSHLKF-IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 91 ~~~~~~~~K~-~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
..|.....+. ..++.|+...+.. +.|++|+|.....++.|-+.|=...+ ...+=|+..++-
T Consensus 5 ~Fy~l~~~~~~~~~c~L~~k~~~~------g~rv~V~~~d~~~a~~lD~~LW~~~~--~sFlPH~~~~~~---------- 66 (137)
T PF04364_consen 5 DFYHLSSDDLERFACRLAEKAYRQ------GQRVLVLCPDEEQAEALDELLWTFSP--DSFLPHGLAGEP---------- 66 (137)
T ss_dssp EEEE-S----HHHHHHHHHHHHHT------T--EEEE-SSHHHHHHHHHHTTTSST--T----EEETT-S----------
T ss_pred EEEEcCCCcHHHHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHCCCC--CCCCCCcccCCC----------
Confidence 3455555565 7888999888775 78999999999999999999966542 233345521111
Q ss_pred HHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK 204 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~ 204 (395)
-.....|+|+++... -..+..+++||++...
T Consensus 67 --~~~~~PV~i~~~~~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 67 --PAARQPVLITWDQEA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp --STT--SEEEE-TTS------S--SEEEE--SS-
T ss_pred --CCCCCeEEEecCccc--CCCCCCCEEEECCCCC
Confidence 111247999886532 2334478999997653
No 208
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=85.88 E-value=3.8 Score=43.82 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=54.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
.+.+||.++++..+....+.|...| +.+..+|| +++..++..++..+..|.+++|++|+
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~g--i~~~~~~s---~~~~~~~~~~~~~l~~~~~~il~~tp 111 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAG--VAAAYLNS---TLSAKEQQDIEKALVNGELKLLYVAP 111 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcC--CcEEEEeC---CCCHHHHHHHHHHHhCCCCCEEEECh
Confidence 3678999999999999999999888 89999999 99999999999999999999999885
No 209
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=85.61 E-value=2.6 Score=43.60 Aligned_cols=76 Identities=17% Similarity=0.360 Sum_probs=55.1
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC------ccccCCCCC
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS------VGEEGLDIG 192 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~------v~~~GlDip 192 (395)
.++||.|+|+..|..+.+.+..... .+.+..++| +.+...+...+ .+..+|||||. +....+++.
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~g---g~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~ 148 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFG---GVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLD 148 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEEC---CcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccc
Confidence 4799999999999988887765421 267778888 77766543322 36789999995 234567888
Q ss_pred CCCEEEEcCCC
Q psy4150 193 EIDLVICFDAQ 203 (395)
Q Consensus 193 ~v~~VI~~d~p 203 (395)
.+++||.=.+.
T Consensus 149 ~v~~lViDEah 159 (456)
T PRK10590 149 QVEILVLDEAD 159 (456)
T ss_pred cceEEEeecHH
Confidence 89988865443
No 210
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=84.08 E-value=9.4 Score=32.78 Aligned_cols=79 Identities=18% Similarity=0.308 Sum_probs=55.5
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHH-HHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQ-EQKEIMKK 170 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~-~R~~~l~~ 170 (395)
..+..|-....-.+...... ....++||.++++..++.+.+.+...+. .+.+..+|| +.+.. +....+
T Consensus 22 ptGsGKT~~~~~~~l~~~~~----~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 92 (169)
T PF00270_consen 22 PTGSGKTLAYILPALNRLQE----GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG---GQSISEDQREVL-- 92 (169)
T ss_dssp STTSSHHHHHHHHHHHHHHT----TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST---TSCHHHHHHHHH--
T ss_pred CCCCccHHHHHHHHHhhhcc----CCCceEEEEeecccccccccccccccccccccccccccc---cccccccccccc--
Confidence 34556777766555554443 2345999999999999999988877653 367888888 77644 333333
Q ss_pred HhcCCccEEEEcC
Q psy4150 171 FRAGEFNTLIATS 183 (395)
Q Consensus 171 Fk~g~~~vLVaT~ 183 (395)
.+..+|+|+|.
T Consensus 93 --~~~~~ilv~T~ 103 (169)
T PF00270_consen 93 --SNQADILVTTP 103 (169)
T ss_dssp --HTTSSEEEEEH
T ss_pred --cccccccccCc
Confidence 77899999994
No 211
>PRK09401 reverse gyrase; Reviewed
Probab=83.55 E-value=6 Score=45.89 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=59.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----ccccCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEEGLDI 191 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~GlDi 191 (395)
.+.++||.++|+.-+..+++.+...+. .+.+..+.|++ +++..++....+.++.|..+|+|||. .+. .+..
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~-~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~ 199 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHS-SLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPK 199 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccC-CcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccc
Confidence 368999999999999999999887653 24444454422 56678888888999999999999995 222 4444
Q ss_pred CCCCEEEEcCC
Q psy4150 192 GEIDLVICFDA 202 (395)
Q Consensus 192 p~v~~VI~~d~ 202 (395)
..+++||.=++
T Consensus 200 ~~~~~lVvDEa 210 (1176)
T PRK09401 200 KKFDFVFVDDV 210 (1176)
T ss_pred cccCEEEEECh
Confidence 45777775444
No 212
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=83.35 E-value=4.1 Score=41.52 Aligned_cols=77 Identities=22% Similarity=0.387 Sum_probs=54.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----cc-ccCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VG-EEGLDI 191 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~-~~GlDi 191 (395)
+.++||.++|+..|..+++.+.... ..+++..++| +.+...+...+ .+..+|||||. .+ ...+++
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~g---g~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l 155 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYG---GDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINL 155 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEEC---CCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCccc
Confidence 4689999999999998877655432 1278888998 76655544333 24579999996 22 345788
Q ss_pred CCCCEEEEcCCC
Q psy4150 192 GEIDLVICFDAQ 203 (395)
Q Consensus 192 p~v~~VI~~d~p 203 (395)
..+.+||.-.+.
T Consensus 156 ~~v~~lViDEad 167 (423)
T PRK04837 156 GAIQVVVLDEAD 167 (423)
T ss_pred ccccEEEEecHH
Confidence 888888865443
No 213
>PTZ00110 helicase; Provisional
Probab=82.20 E-value=3.9 Score=43.38 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=55.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----ccccC-CCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEEG-LDI 191 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~G-lDi 191 (395)
+..+||.++|++.|..+.+.+...+. .+++..++| +.+...+...+ +. .++|||+|+ .+..+ +++
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~g---g~~~~~q~~~l---~~-~~~IlVaTPgrL~d~l~~~~~~l 275 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYG---GVPKRGQIYAL---RR-GVEILIACPGRLIDFLESNVTNL 275 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeC---CCCHHHHHHHH---Hc-CCCEEEECHHHHHHHHHcCCCCh
Confidence 45799999999999999888877543 367778888 77665544333 33 479999995 44444 677
Q ss_pred CCCCEEEEcCCC
Q psy4150 192 GEIDLVICFDAQ 203 (395)
Q Consensus 192 p~v~~VI~~d~p 203 (395)
..+.+||.=.+.
T Consensus 276 ~~v~~lViDEAd 287 (545)
T PTZ00110 276 RRVTYLVLDEAD 287 (545)
T ss_pred hhCcEEEeehHH
Confidence 788888765443
No 214
>KOG0343|consensus
Probab=81.66 E-value=4.5 Score=42.56 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHh-hhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 100 FIRLREILESHFRL-HAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 100 ~~~L~~lL~~~~~~-~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
+.-|.-+|+.++.. |.. ..+--+||.++||+.|-.+.+.|.+.|. .+.+..+.| |.+-. .+.-+-..+
T Consensus 121 LAFlvPvlE~L~r~kWs~-~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiG---G~~~k-----~E~eRi~~m 191 (758)
T KOG0343|consen 121 LAFLVPVLEALYRLKWSP-TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIG---GKDVK-----FELERISQM 191 (758)
T ss_pred eeehHHHHHHHHHcCCCC-CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeec---CchhH-----HHHHhhhcC
Confidence 34455666665544 543 4456799999999999999999988653 478888888 66533 334455679
Q ss_pred cEEEEcC
Q psy4150 177 NTLIATS 183 (395)
Q Consensus 177 ~vLVaT~ 183 (395)
+|||||+
T Consensus 192 NILVCTP 198 (758)
T KOG0343|consen 192 NILVCTP 198 (758)
T ss_pred CeEEech
Confidence 9999997
No 215
>KOG1133|consensus
Probab=81.33 E-value=12 Score=40.34 Aligned_cols=95 Identities=12% Similarity=0.093 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-----CCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-----MVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-----~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
-+..|..++.++... -.+-+++|+++-.-...+.+.+...|- .-+.++.-. .-+ -..+++.+..
T Consensus 613 ~l~~l~~~~~nL~~~-----VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~---k~~---~~dvl~~Ya~ 681 (821)
T KOG1133|consen 613 MIKDLGSSISNLSNA-----VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEP---KDT---VEDVLEGYAE 681 (821)
T ss_pred HHHHHHHHHHHHHhh-----CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccC---ccc---HHHHHHHHHH
Confidence 445555666655443 247799999999988888888876651 112222222 111 3456666654
Q ss_pred ----CCccEEEEc--CccccCCCCCC--CCEEEEcCCCC
Q psy4150 174 ----GEFNTLIAT--SVGEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 174 ----g~~~vLVaT--~v~~~GlDip~--v~~VI~~d~p~ 204 (395)
|.-.+|+|. -=+++|||+.+ +.+||..++|-
T Consensus 682 a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPy 720 (821)
T KOG1133|consen 682 AAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPY 720 (821)
T ss_pred HhhcCCCeEEEEEeccccccccccccccccEEEEeecCC
Confidence 444566554 45789999986 78888888874
No 216
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=80.74 E-value=6.4 Score=40.82 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=56.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc------cccCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV------GEEGLDI 191 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v------~~~GlDi 191 (395)
..++||.++|+..+..+.+.+..... .+.+..++| +.+...+ .+.+..+..+|||+|.- -...+.+
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~g---g~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l 235 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVG---GMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHL 235 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEc---cCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCccc
Confidence 46899999999999998887765432 277888888 7665543 34556778999999962 2335677
Q ss_pred CCCCEEEEcCCC
Q psy4150 192 GEIDLVICFDAQ 203 (395)
Q Consensus 192 p~v~~VI~~d~p 203 (395)
..+++||.=.+.
T Consensus 236 ~~l~~lViDEah 247 (475)
T PRK01297 236 DMVEVMVLDEAD 247 (475)
T ss_pred ccCceEEechHH
Confidence 788888765443
No 217
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=78.87 E-value=9.6 Score=41.01 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=53.0
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
+.+||.++++.-+....+.|...| +.+..+++ ..+..++..++..+..|.+++|++|+
T Consensus 66 g~tlVisPl~sL~~dqv~~l~~~g--i~~~~~~s---~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 66 GLTLVVSPLISLMKDQVDQLLANG--VAAACLNS---TQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCEEEEecHHHHHHHHHHHHHHcC--CcEEEEcC---CCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 689999999999999999999888 88899998 88999999999999999999999884
No 218
>KOG0389|consensus
Probab=77.54 E-value=9.3 Score=41.84 Aligned_cols=63 Identities=14% Similarity=0.387 Sum_probs=49.5
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC--CccEEEEc-Cccc
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG--EFNTLIAT-SVGE 186 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g--~~~vLVaT-~v~~ 186 (395)
+..++=||-|++-. .+.+-..+.+.+|.+++..+|| +|.+|.++-..+..+ .++|||+| ++++
T Consensus 446 g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyG-----Sq~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 446 GNPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYG-----SQDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred CCCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccC-----cHHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 34677788888754 4444455677889999999999 689999999999887 89999999 5444
No 219
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=77.20 E-value=12 Score=43.05 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=52.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc--CCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA--GEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~--g~~~vLVaT~ 183 (395)
.+.+||.++++..+.+-...|...+ +++.++.| +++..++..+++.+.. |.++||++|+
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~G--I~Aa~L~s---~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQAN--IPAASLSA---GMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCC--CeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 4679999999999887666676777 99999999 9999999999999987 8999999997
No 220
>KOG0338|consensus
Probab=77.12 E-value=6.2 Score=41.17 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=69.6
Q ss_pred ccccHHHHH-HHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRL-REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L-~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.++.|...+ +-+|+.++.... .-...||||.|+|+..+-.++...++.. -.+.++...| |++-..+..+|+.
T Consensus 227 TGsGKTAAF~lPiLERLlYrPk-~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vG---GL~lk~QE~~LRs- 301 (691)
T KOG0338|consen 227 TGSGKTAAFALPILERLLYRPK-KVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVG---GLDLKAQEAVLRS- 301 (691)
T ss_pred ccCCchhhhHHHHHHHHhcCcc-cCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeec---CccHHHHHHHHhh-
Confidence 344555543 345555544311 1346899999999999887777665532 2378888889 9999999888875
Q ss_pred hcCCccEEEEcCc-------cccCCCCCCCCEEEEcCCC
Q psy4150 172 RAGEFNTLIATSV-------GEEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 172 k~g~~~vLVaT~v-------~~~GlDip~v~~VI~~d~p 203 (395)
.-+|+|||+- -+-+.|+.++.+.|.-.+.
T Consensus 302 ---~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 302 ---RPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred ---CCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 4689999972 3457777777777754443
No 221
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=75.82 E-value=23 Score=28.43 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=52.4
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
+..|-..+..++...... ....++||+|+++..++.+.+.+..... ...+.++++ ........ .....
T Consensus 10 G~GKT~~~~~~~~~~~~~----~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~ 78 (144)
T cd00046 10 GSGKTLAALLPILELLDS----LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIG---GTSIKQQE----KLLSG 78 (144)
T ss_pred CCchhHHHHHHHHHHHhc----ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEec---CcchhHHH----HHhcC
Confidence 455777776666665442 3468999999999999988887776543 366777777 44444333 22345
Q ss_pred CccEEEEcCc
Q psy4150 175 EFNTLIATSV 184 (395)
Q Consensus 175 ~~~vLVaT~v 184 (395)
...|+++|.-
T Consensus 79 ~~~i~i~t~~ 88 (144)
T cd00046 79 KTDIVVGTPG 88 (144)
T ss_pred CCCEEEECcH
Confidence 7788888854
No 222
>PRK13766 Hef nuclease; Provisional
Probab=75.32 E-value=16 Score=40.41 Aligned_cols=97 Identities=16% Similarity=0.248 Sum_probs=66.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.....-++..++. ..++++||.|+|+..++...+.+.+... ...+..++| +.+..+|..+..
T Consensus 38 tG~GKT~~a~~~i~~~l~-----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g---~~~~~~r~~~~~--- 106 (773)
T PRK13766 38 TGLGKTAIALLVIAERLH-----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTG---EVSPEKRAELWE--- 106 (773)
T ss_pred CCccHHHHHHHHHHHHHH-----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeC---CCCHHHHHHHHh---
Confidence 445576644444444432 3468999999999999887777766431 246778888 888888766553
Q ss_pred cCCccEEEEcC------ccccCCCCCCCCEEEEcCCCC
Q psy4150 173 AGEFNTLIATS------VGEEGLDIGEIDLVICFDAQK 204 (395)
Q Consensus 173 ~g~~~vLVaT~------v~~~GlDip~v~~VI~~d~p~ 204 (395)
..+|+|+|. ++..-+++..+++||.-.+..
T Consensus 107 --~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~ 142 (773)
T PRK13766 107 --KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHR 142 (773)
T ss_pred --CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcc
Confidence 368999995 233456777889988776654
No 223
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=75.30 E-value=16 Score=31.55 Aligned_cols=94 Identities=21% Similarity=0.336 Sum_probs=60.0
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCC---CceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM---VKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~---~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|...+...+..+... ....++||.+++...+..+...+....+. .....+++ ... ...+..+
T Consensus 33 ~GsGKT~~~~~~~~~~~~~----~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~ 101 (201)
T smart00487 33 TGSGKTLAALLPALEALKR----GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGG---DSK----REQLRKL 101 (201)
T ss_pred CCCchhHHHHHHHHHHhcc----cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCC---cch----HHHHHHH
Confidence 4556888776666665543 23578999999999999888887765532 22334444 221 3455566
Q ss_pred hcCCccEEEEc-----CccccC-CCCCCCCEEEE
Q psy4150 172 RAGEFNTLIAT-----SVGEEG-LDIGEIDLVIC 199 (395)
Q Consensus 172 k~g~~~vLVaT-----~v~~~G-lDip~v~~VI~ 199 (395)
..+...++++| +.+..+ ++...++++|.
T Consensus 102 ~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 102 ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 67777999999 444443 35556666665
No 224
>KOG0330|consensus
Probab=73.93 E-value=14 Score=37.32 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=58.9
Q ss_pred ccHHHH-HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 97 HLKFIR-LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 97 ~~K~~~-L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
+.|.-. ++-+|..++.+ .....++|.++||+-|..+++.+...|. ++++..+.| +++-..+. +.-+
T Consensus 109 SGKT~afaLPIl~~LL~~----p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvG---G~~m~~q~--~~L~-- 177 (476)
T KOG0330|consen 109 SGKTGAFALPILQRLLQE----PKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVG---GMDMMLQA--NQLS-- 177 (476)
T ss_pred CCchhhhHHHHHHHHHcC----CCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEec---CchHHHHH--HHhh--
Confidence 334433 44555555543 4458899999999999999998877643 488999999 88755433 2323
Q ss_pred CCccEEEEcCc-----c--ccCCCCCCCCEE
Q psy4150 174 GEFNTLIATSV-----G--EEGLDIGEIDLV 197 (395)
Q Consensus 174 g~~~vLVaT~v-----~--~~GlDip~v~~V 197 (395)
.+-.|||||+- + ..|..+..+.+.
T Consensus 178 kkPhilVaTPGrL~dhl~~Tkgf~le~lk~L 208 (476)
T KOG0330|consen 178 KKPHILVATPGRLWDHLENTKGFSLEQLKFL 208 (476)
T ss_pred cCCCEEEeCcHHHHHHHHhccCccHHHhHHH
Confidence 35778999972 1 356655444433
No 225
>KOG0339|consensus
Probab=72.76 E-value=10 Score=39.59 Aligned_cols=100 Identities=16% Similarity=0.141 Sum_probs=65.2
Q ss_pred ccccHHHHHHHHHHHHHHhhhccC-CCcc-EEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKG-ETTK-VIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~-~~~r-~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..+.|...+.--...|+.+..+-. .+++ .+|.|+|+..|..+...-++.+ -+++++++|| +.+.-++...|+
T Consensus 269 tgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~yg---Ggsk~eQ~k~Lk- 344 (731)
T KOG0339|consen 269 TGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYG---GGSKWEQSKELK- 344 (731)
T ss_pred ccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeec---CCcHHHHHHhhh-
Confidence 445566665433333333211111 2344 5788999999988876655542 2389999999 888887766655
Q ss_pred HhcCCccEEEEcC------ccccCCCCCCCCEEEEcC
Q psy4150 171 FRAGEFNTLIATS------VGEEGLDIGEIDLVICFD 201 (395)
Q Consensus 171 Fk~g~~~vLVaT~------v~~~GlDip~v~~VI~~d 201 (395)
-...++|||+ |--.|+|+..|+++|.-.
T Consensus 345 ---~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DE 378 (731)
T KOG0339|consen 345 ---EGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDE 378 (731)
T ss_pred ---cCCeEEEechHHHHHHHHhhcccceeeeEEEEec
Confidence 4678999997 344688999888777533
No 226
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=72.70 E-value=28 Score=34.07 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=70.4
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHH-----
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIM----- 168 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l----- 168 (395)
...+.|+..|.++|...+.. .....+.+++|.++..+..+.+-.+|.-.+ +....+.| ..-..+....-
T Consensus 92 ~~tS~KF~~L~~Li~~li~~-~~~~~~~~ilIv~~~~k~ldllE~~llGk~--~~~kr~sg---~~l~~~~~~~~~~~~~ 165 (297)
T PF11496_consen 92 AYTSGKFQFLNDLIDSLIDR-DRREYPLHILIVSRSGKELDLLEGLLLGKK--LNYKRYSG---ESLYDEKHKVPKNGNT 165 (297)
T ss_dssp HHT-HHHHHHHHHHHHH------TTSSEEEEEEE-STHHHHHHHHHHTTSS--SEEEESSS-----S--S---S------
T ss_pred HHcCchHHHHHHHHHHHHhh-hcccCCceEEEEecCccHHHHHHHHHccCC--eeEEecCC---CCCcCccccCCccccc
Confidence 45677999999999887542 112456899999999999999999998766 66666666 22222221111
Q ss_pred -------HHH-hcC--CccE-EEEcCccccC----CCCCCCCEEEEcCCCCCh-hhHhhhccccccc-cCceEEEEEeCC
Q psy4150 169 -------KKF-RAG--EFNT-LIATSVGEEG----LDIGEIDLVICFDAQKSP-IKMVQRLGRTGRK-RNGRCVILLTQG 231 (395)
Q Consensus 169 -------~~F-k~g--~~~v-LVaT~v~~~G----lDip~v~~VI~~d~p~s~-~~yiQr~GRagR~-~~g~~i~l~~~~ 231 (395)
... ..+ .+.| |++|+-+... ++-..+++||-||.-.++ ...+|++-..+|. ...-++.++...
T Consensus 166 ~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~~n 245 (297)
T PF11496_consen 166 ESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVPSN 245 (297)
T ss_dssp ----------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEETT
T ss_pred ccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEeeCC
Confidence 000 111 3444 4455434332 333478899999987653 3466666555444 345566677766
Q ss_pred chhhHH
Q psy4150 232 REAHNF 237 (395)
Q Consensus 232 ~e~~~~ 237 (395)
+-++..
T Consensus 246 SiEHi~ 251 (297)
T PF11496_consen 246 SIEHIE 251 (297)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 655543
No 227
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=70.41 E-value=9.7 Score=42.08 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=42.9
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~ 219 (395)
...+.+.+-..+.+|.|=|+|=.++-+....|..+=+|.+||..|-
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRL 527 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRL 527 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceee
Confidence 3578999999999999999999999999999999999999999995
No 228
>KOG0383|consensus
Probab=70.18 E-value=3 Score=45.19 Aligned_cols=80 Identities=24% Similarity=0.304 Sum_probs=63.1
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc---
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA--- 173 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~--- 173 (395)
..|+..|...+..+.. .+.||+||..-..+.+.|.+++...+ ....+.| ..+-.+|..++..|..
T Consensus 614 ~~k~~~l~~~~~~l~~------~ghrvl~~~q~~~~ldlled~~~~~~---~~~r~dG---~~~~~~rq~ai~~~n~~~~ 681 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKS------SGHRVLIFSQMIHMLDLLEDYLTYEG---KYERIDG---PITGPERQAAIDRFNAPGS 681 (696)
T ss_pred HHHHHHHHHHHHHHHh------cchhhHHHHHHHHHHHHhHHHHhccC---cceeccC---CccchhhhhhccccCCCCc
Confidence 3466666666655433 48999999999999999999998776 5567788 8888999999999984
Q ss_pred CCccEEEEcCccccC
Q psy4150 174 GEFNTLIATSVGEEG 188 (395)
Q Consensus 174 g~~~vLVaT~v~~~G 188 (395)
..+..|.||..++.|
T Consensus 682 ~~~cfllstra~g~g 696 (696)
T KOG0383|consen 682 NQFCFLLSTRAGGLG 696 (696)
T ss_pred cceEEEeecccccCC
Confidence 356789999887655
No 229
>KOG0329|consensus
Probab=70.09 E-value=8.7 Score=36.70 Aligned_cols=90 Identities=21% Similarity=0.341 Sum_probs=66.5
Q ss_pred CccEEEEcCcHHHHHHHHHH---HcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC------ccccCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDV---LKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS------VGEEGLD 190 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~---L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~------v~~~GlD 190 (395)
.-.++|.|+|++.|-.+.+. +.++-|.+++.++.| +++-..-.++++. --.|+|+|+ +-.+.++
T Consensus 110 ~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfG---G~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~ 182 (387)
T KOG0329|consen 110 QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFG---GLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLN 182 (387)
T ss_pred eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEc---ceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCc
Confidence 44689999999999988764 445668899999999 9998887777765 567889997 3346688
Q ss_pred CCCCCEEEEcCCCC-----ChhhHhhhcccc
Q psy4150 191 IGEIDLVICFDAQK-----SPIKMVQRLGRT 216 (395)
Q Consensus 191 ip~v~~VI~~d~p~-----s~~~yiQr~GRa 216 (395)
+..|.+-+.-.+.+ +...-+|-+=|.
T Consensus 183 lk~vkhFvlDEcdkmle~lDMrRDvQEifr~ 213 (387)
T KOG0329|consen 183 LKNVKHFVLDECDKMLEQLDMRRDVQEIFRM 213 (387)
T ss_pred hhhcceeehhhHHHHHHHHHHHHHHHHHhhc
Confidence 88887777655543 344556666665
No 230
>KOG0345|consensus
Probab=67.86 E-value=38 Score=35.18 Aligned_cols=102 Identities=23% Similarity=0.314 Sum_probs=66.5
Q ss_pred eccccHHH-HHHHHHHHHHHhhhccCCCc--cEEEEcCcHHHHHHHHHHHc---ccCCCCceeEEeccCCCCCHHHHHHH
Q psy4150 94 AWSHLKFI-RLREILESHFRLHAEKGETT--KVIIFANYRVVVAEIFDVLK---PLEPMVKASMFVGQSSGVTQQEQKEI 167 (395)
Q Consensus 94 ~~~~~K~~-~L~~lL~~~~~~~~~~~~~~--r~iVF~~t~~~ae~l~~~L~---~~~~~~~~~~lhg~~~~~~~~~R~~~ 167 (395)
..++.|.- -|.-+|+.......+ .++. -.||-++||+.|..+.+.+. ++.+.+.+..+.| +.+..+ -
T Consensus 51 vTGSGKTlAFllP~le~i~rr~~~-~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vG---G~~v~~---D 123 (567)
T KOG0345|consen 51 VTGSGKTLAFLLPMLEIIYRREAK-TPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVG---GRSVEE---D 123 (567)
T ss_pred CCCCCchhhHHHHHHHHHHhhccC-CCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEec---CccHHH---H
Confidence 34444443 444555554343222 2233 57999999999887766543 3445688999999 866554 4
Q ss_pred HHHHhcCCccEEEEcC-----ccc---cCCCCCCCCEEEEcCC
Q psy4150 168 MKKFRAGEFNTLIATS-----VGE---EGLDIGEIDLVICFDA 202 (395)
Q Consensus 168 l~~Fk~g~~~vLVaT~-----v~~---~GlDip~v~~VI~~d~ 202 (395)
+..|+....+|||||+ ++. +++|+-.++++|.-.+
T Consensus 124 i~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEA 166 (567)
T KOG0345|consen 124 IKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEA 166 (567)
T ss_pred HHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecch
Confidence 6778889999999996 333 3566668888875444
No 231
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=64.14 E-value=18 Score=40.87 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=42.3
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~ 219 (395)
..+.+++-+.+.+|.|-|.|-.+..+....|...-.|.+||..|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 678999999999999999999999999999999999999999995
No 232
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=60.73 E-value=24 Score=37.10 Aligned_cols=78 Identities=13% Similarity=0.273 Sum_probs=51.2
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----ccc-cCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGE-EGLD 190 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~-~GlD 190 (395)
.+.++||.++|+..|..+.+.+...+. .+++..+.| +.+...+. ..++. ..+|+|||+ ++. .+++
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~g---G~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~~~~~~ 267 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVG---GDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLSKHDIE 267 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEEC---CcchHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCcc
Confidence 456899999999999887776654432 256666776 55444332 23333 478999994 433 3677
Q ss_pred CCCCCEEEEcCCC
Q psy4150 191 IGEIDLVICFDAQ 203 (395)
Q Consensus 191 ip~v~~VI~~d~p 203 (395)
+..+.+||.=.+.
T Consensus 268 l~~v~~lViDEad 280 (518)
T PLN00206 268 LDNVSVLVLDEVD 280 (518)
T ss_pred chheeEEEeecHH
Confidence 8888888765443
No 233
>PTZ00424 helicase 45; Provisional
Probab=60.37 E-value=69 Score=31.98 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=60.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.....-.+..++.. .....++||+++++..+..+.+.+...+. .+.+..+.| +...... +..+.
T Consensus 74 TGsGKT~~~~l~~l~~~~~---~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~---~~~~~ 144 (401)
T PTZ00424 74 SGTGKTATFVIAALQLIDY---DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVG---GTVVRDD---INKLK 144 (401)
T ss_pred CCChHHHHHHHHHHHHhcC---CCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEEC---CcCHHHH---HHHHc
Confidence 4556765433222233221 12356899999999999998888776542 245566667 5554432 33444
Q ss_pred cCCccEEEEcCc------cccCCCCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATSV------GEEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~v------~~~GlDip~v~~VI~~d~p 203 (395)
.+ .+|+|+|.- ....+.+..+++||.=.+.
T Consensus 145 ~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 145 AG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred CC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 43 689999962 1234567788888865554
No 234
>PRK02362 ski2-like helicase; Provisional
Probab=60.26 E-value=24 Score=38.88 Aligned_cols=94 Identities=16% Similarity=0.224 Sum_probs=60.2
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
..+..|.-...-.+...+. .+.++|+.++++..|...++.+...++ ++++..++| +.+.... .
T Consensus 47 PTGSGKTlia~lail~~l~------~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tG---d~~~~~~-------~ 110 (737)
T PRK02362 47 PTASGKTLIAELAMLKAIA------RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTG---DYDSRDE-------W 110 (737)
T ss_pred CCcchHHHHHHHHHHHHHh------cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeC---CcCcccc-------c
Confidence 3445565554333333322 257999999999999999988876521 388889999 6654321 1
Q ss_pred cCCccEEEEcC-----ccccC-CCCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATS-----VGEEG-LDIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~~G-lDip~v~~VI~~d~p 203 (395)
.+..+|+|||. ++..+ ..+..+.+||.=.+.
T Consensus 111 l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 111 LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 25678999994 33333 235678888865543
No 235
>KOG0350|consensus
Probab=59.58 E-value=18 Score=37.77 Aligned_cols=82 Identities=13% Similarity=0.322 Sum_probs=57.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-------cccCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV-------GEEGLD 190 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v-------~~~GlD 190 (395)
.-|+||.++|+..+-.+++.+....+ ++.++.+.|++ .+..+ -.+...+-....++|||+|+- .-.|+|
T Consensus 215 ~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~-sl~~E-~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~ 292 (620)
T KOG0350|consen 215 RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQN-SLEDE-ARQLASDPPECRIDILVATPGRLVDHLNNTKSFD 292 (620)
T ss_pred ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEeccccc-chHHH-HHHHhcCCCccccceEEcCchHHHHhccCCCCcc
Confidence 46899999999999999999887643 36677777854 23222 223333334457899999973 357888
Q ss_pred CCCCCEEEEcCCC
Q psy4150 191 IGEIDLVICFDAQ 203 (395)
Q Consensus 191 ip~v~~VI~~d~p 203 (395)
+.+..+.|.-.+.
T Consensus 293 Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 293 LKHLRFLVIDEAD 305 (620)
T ss_pred hhhceEEEechHH
Confidence 9888888765554
No 236
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=58.26 E-value=89 Score=28.03 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=45.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
+.++-++-.+...++.+.+.|++..|.+.+...|| .++..+...+++..+....++|
T Consensus 48 ~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g---~f~~~~~~~i~~~I~~s~~dil 104 (177)
T TIGR00696 48 KLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFG---PLEPEERKAALAKIARSGAGIV 104 (177)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC---CCChHHHHHHHHHHHHcCCCEE
Confidence 46888888899999999999999888787665577 7888887888888877555554
No 237
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=57.10 E-value=1.2e+02 Score=28.27 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=62.0
Q ss_pred CCccEEEEcCc------------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc---CCccEEEEcC
Q psy4150 119 ETTKVIIFANY------------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA---GEFNTLIATS 183 (395)
Q Consensus 119 ~~~r~iVF~~t------------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~---g~~~vLVaT~ 183 (395)
+.+.+||+.|. ...++.|++.|+..| +.+.. +. +++..+-.+.+++|.. ...+++|+.
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lg--F~V~~-~~---nlt~~~~~~~l~~f~~~~~~~~d~~v~~- 80 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLG--YEVEV-KN---NLTAEEILEELKEFASPDHSDSDSFVCV- 80 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCC--CEEEE-eC---CCCHHHHHHHHHHHHhccCCCCCeeEEE-
Confidence 45678888774 466999999999999 87764 44 7999999999999985 345555544
Q ss_pred ccccCCCCCCCCEEEEcC-CCCChhhHhhhcc
Q psy4150 184 VGEEGLDIGEIDLVICFD-AQKSPIKMVQRLG 214 (395)
Q Consensus 184 v~~~GlDip~v~~VI~~d-~p~s~~~yiQr~G 214 (395)
+++-|.. +.|+-.| .+-+....++...
T Consensus 81 ~~sHG~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 81 ILSHGEE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred ECCCCCC----CEEEEecCcEEEHHHHHHhhc
Confidence 6777765 6777666 4446667776664
No 238
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=57.05 E-value=46 Score=36.74 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=43.8
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV 184 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v 184 (395)
+.++.|.|+|...|...++.+..... ++++.++.| +++..+|..... ++|+++|+.
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g---~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILS---GMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeC---CCCHHHHHHhcC------CCEEEECCC
Confidence 46899999999888877776654321 289999999 999887776653 799999976
No 239
>KOG0385|consensus
Probab=56.74 E-value=44 Score=36.81 Aligned_cols=59 Identities=15% Similarity=0.383 Sum_probs=46.0
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc-CCccEEEEc
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA-GEFNTLIAT 182 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~-g~~~vLVaT 182 (395)
+..++.||.|+--.. ......+.+..|.+.+..+|| +..+|...++++.. |.++|+|+|
T Consensus 215 ~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~~~~~~G-----dk~eR~~~~r~~~~~~~fdV~iTs 274 (971)
T KOG0385|consen 215 GIPGPFLVIAPKSTL-DNWMNEFKRFTPSLNVVVYHG-----DKEERAALRRDIMLPGRFDVCITS 274 (971)
T ss_pred CCCCCeEEEeeHhhH-HHHHHHHHHhCCCcceEEEeC-----CHHHHHHHHHHhhccCCCceEeeh
Confidence 346889999986544 444455566778899999999 57899999998765 589999988
No 240
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=56.59 E-value=14 Score=28.56 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=30.7
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~ 160 (395)
.+.++++||.+-..+...+..|+..| +.+..+.| ++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G--~~v~~l~G---G~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNG--FKVKNLDG---GYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCC--CCEEEecC---CHH
Confidence 35789999999888888999999998 67888888 663
No 241
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=55.55 E-value=58 Score=34.13 Aligned_cols=94 Identities=19% Similarity=0.297 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc-C-CCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL-E-PMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~-~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
.|.-.-.-++...+.. . ++++|+..+|+-.+..-+..+.+. + |.-.+..|.| ..++.+|......
T Consensus 41 GKT~IA~~V~~~~l~~----~-~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltG---ev~p~~R~~~w~~----- 107 (542)
T COG1111 41 GKTFIAAMVIANRLRW----F-GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTG---EVRPEEREELWAK----- 107 (542)
T ss_pred cHHHHHHHHHHHHHHh----c-CCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecC---CCChHHHHHHHhh-----
Confidence 3554444445555554 2 348999999999888888777663 2 3356779999 9999999988764
Q ss_pred ccEEEEcC------ccccCCCCCCCCEEEEcCCCC
Q psy4150 176 FNTLIATS------VGEEGLDIGEIDLVICFDAQK 204 (395)
Q Consensus 176 ~~vLVaT~------v~~~GlDip~v~~VI~~d~p~ 204 (395)
.+|+|+|+ +.+==||+.++.++|.-.+..
T Consensus 108 ~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR 142 (542)
T COG1111 108 KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR 142 (542)
T ss_pred CCEEEeccHHHHhHHhcCccChHHceEEEechhhh
Confidence 68999995 333448999999998665544
No 242
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=55.02 E-value=72 Score=34.78 Aligned_cols=108 Identities=11% Similarity=0.157 Sum_probs=71.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEecc-------------------
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ------------------- 155 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~------------------- 155 (395)
.++.|--.+..++... +.++||.++++..|..|+..|+...|.-.+.++.++
T Consensus 38 tgs~kt~~~a~~~~~~---------~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k 108 (655)
T TIGR00631 38 TGSGKTFTMANVIAQV---------NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEK 108 (655)
T ss_pred CCcHHHHHHHHHHHHh---------CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccc
Confidence 3455666666665542 468999999999999999999887665446666210
Q ss_pred ---CCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCC----CCEEEEcCCCCChhhHhh
Q psy4150 156 ---SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGE----IDLVICFDAQKSPIKMVQ 211 (395)
Q Consensus 156 ---~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~----v~~VI~~d~p~s~~~yiQ 211 (395)
.+.--...|..++..+..+.-.|+|||-.+-.|+=-|+ ..+.+..+-..+...++.
T Consensus 109 ~~~~~~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~ 171 (655)
T TIGR00631 109 DASINDEIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLR 171 (655)
T ss_pred cCCCChHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHH
Confidence 00222456888999998887778888855567765453 445555555555555444
No 243
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=55.01 E-value=59 Score=35.98 Aligned_cols=96 Identities=11% Similarity=0.191 Sum_probs=62.0
Q ss_pred ccccHHHHH-HHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRL-REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L-~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.++.|.... +-+|..... .+..++|+.++|+..+......|.+.+ ..+++..++| +.+..+|..+ +
T Consensus 60 TGSGKTla~~LPiL~~l~~-----~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~G---dt~~~~r~~i----~ 127 (742)
T TIGR03817 60 TASGKSLAYQLPVLSALAD-----DPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDG---DTPTEERRWA----R 127 (742)
T ss_pred CCCcHHHHHHHHHHHHHhh-----CCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeC---CCCHHHHHHH----h
Confidence 344555443 344444322 245789999999999999999888754 2378888899 8887766432 2
Q ss_pred cCCccEEEEcC-ccccCC---------CCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATS-VGEEGL---------DIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~-v~~~Gl---------Dip~v~~VI~~d~p 203 (395)
. ..+|+|+|+ .+..++ .+..+.+||.=.+.
T Consensus 128 ~-~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah 167 (742)
T TIGR03817 128 E-HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECH 167 (742)
T ss_pred c-CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChh
Confidence 2 378999995 332221 25678888865443
No 244
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=53.94 E-value=47 Score=37.89 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=43.6
Q ss_pred HHHHHHHHH--hcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc
Q psy4150 163 EQKEIMKKF--RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219 (395)
Q Consensus 163 ~R~~~l~~F--k~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~ 219 (395)
.+......| +....++||.+|.+-.|.|-|.++.+ -.|-|--.-.++|.+-||.|.
T Consensus 579 ~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~Tm-YvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTL-YVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHhhhhhhhcCcCCCCCEEEEEccccccCCccccceE-EeccccccchHHHHHHHhccC
Confidence 344445553 44689999999999999999976654 456666777899999999997
No 245
>PRK00254 ski2-like helicase; Provisional
Probab=53.78 E-value=42 Score=36.86 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=59.5
Q ss_pred eccccHHHHH-HHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 94 AWSHLKFIRL-REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 94 ~~~~~K~~~L-~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
..+..|.... +-++..... .+.++|+-++++..+...++.+.... -++++..++| +.+...+
T Consensus 47 pTGsGKT~~~~l~il~~l~~------~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~G---d~~~~~~------- 110 (720)
T PRK00254 47 PTASGKTLVAEIVMVNKLLR------EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTG---DYDSTDE------- 110 (720)
T ss_pred CCCcHHHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeC---CCCCchh-------
Confidence 3455566554 333433322 25799999999999999988776421 1288899999 6654322
Q ss_pred hcCCccEEEEcC-----ccccC-CCCCCCCEEEEcCCC
Q psy4150 172 RAGEFNTLIATS-----VGEEG-LDIGEIDLVICFDAQ 203 (395)
Q Consensus 172 k~g~~~vLVaT~-----v~~~G-lDip~v~~VI~~d~p 203 (395)
..+..+|+|+|. ++..+ ..+.++.+||.=++.
T Consensus 111 ~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 111 WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 125689999994 33322 346678888865543
No 246
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=53.69 E-value=56 Score=38.99 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=56.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcc--------------cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKP--------------LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV- 184 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~--------------~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v- 184 (395)
+.++|+.++++..+.++.+.|+. ..+.+++..+|| +.++.+|.+.++ ...+|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtG---Dt~~~eR~rll~----~ppdILVTTPEs 109 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTG---DTPAQERSKLTR----NPPDILITTPES 109 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEEC---CCCHHHHHHHhc----CCCCEEEecHHH
Confidence 57899999999999988887642 123488999999 999998876543 46799999962
Q ss_pred ----c-ccC-CCCCCCCEEEEcCC
Q psy4150 185 ----G-EEG-LDIGEIDLVICFDA 202 (395)
Q Consensus 185 ----~-~~G-lDip~v~~VI~~d~ 202 (395)
+ .++ ..+.+|.+||.=..
T Consensus 110 L~~LLtsk~r~~L~~Vr~VIVDE~ 133 (1490)
T PRK09751 110 LYLMLTSRARETLRGVETVIIDEV 133 (1490)
T ss_pred HHHHHhhhhhhhhccCCEEEEecH
Confidence 2 233 35788999886543
No 247
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=53.46 E-value=62 Score=32.44 Aligned_cols=113 Identities=19% Similarity=0.132 Sum_probs=78.5
Q ss_pred eeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 93 YAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 93 ~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+.+..|.+.+.+.+...+.. ++++.|=++..+.|-+|+.-|+...+......+|| +-++. |+
T Consensus 123 AV~GaGKTEMif~~i~~al~~------G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg---~S~~~--------fr 185 (441)
T COG4098 123 AVTGAGKTEMIFQGIEQALNQ------GGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYG---DSDSY--------FR 185 (441)
T ss_pred EecCCCchhhhHHHHHHHHhc------CCeEEEecCcccchHHHHHHHHHhhccCCeeeEec---CCchh--------cc
Confidence 346778999999988887654 79999999999999999999998877788899999 44433 32
Q ss_pred cCCccEEEEcC--ccccCCCCCCCCEEEEcC---CCCChhhHhhhccccccccCceEEEEE
Q psy4150 173 AGEFNTLIATS--VGEEGLDIGEIDLVICFD---AQKSPIKMVQRLGRTGRKRNGRCVILL 228 (395)
Q Consensus 173 ~g~~~vLVaT~--v~~~GlDip~v~~VI~~d---~p~s~~~yiQr~GRagR~~~g~~i~l~ 228 (395)
..++|||. ++.- - ...+++|.-. +|-+....+|-.-+-+|...|..+++-
T Consensus 186 ---~plvVaTtHQLlrF-k--~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylT 240 (441)
T COG4098 186 ---APLVVATTHQLLRF-K--QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLT 240 (441)
T ss_pred ---ccEEEEehHHHHHH-H--hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEe
Confidence 45667763 2211 0 1344454432 466777778877777777555554443
No 248
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.94 E-value=1.1e+02 Score=27.07 Aligned_cols=58 Identities=12% Similarity=0.236 Sum_probs=46.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCcee-EEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKAS-MFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~-~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
+.++-++-.+-..++.+...|++..|.+.+. ..|| .++..+...+++..+....++|+
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g---~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHG---YFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCC---CCChhhHHHHHHHHHHcCCCEEE
Confidence 5688888889999999999999998877765 4445 67888899999988876666544
No 249
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=51.75 E-value=27 Score=39.01 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=37.5
Q ss_pred CccEEEEc-CcHHHHHHHHHHHcccCC-------------------------CCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 120 TTKVIIFA-NYRVVVAEIFDVLKPLEP-------------------------MVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 120 ~~r~iVF~-~t~~~ae~l~~~L~~~~~-------------------------~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
..+.|||+ +|+.-++.+++.+.+.+. .+++..++| +.+..... ...+
T Consensus 61 ~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~G---G~~~~~q~---~~l~- 133 (844)
T TIGR02621 61 VPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRG---QFADNDEW---MLDP- 133 (844)
T ss_pred ccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEEC---CCChHHHH---HhcC-
Confidence 45677766 999888877776654331 367888899 77765443 2233
Q ss_pred CCccEEEEc
Q psy4150 174 GEFNTLIAT 182 (395)
Q Consensus 174 g~~~vLVaT 182 (395)
....|||+|
T Consensus 134 ~~p~IIVgT 142 (844)
T TIGR02621 134 HRPAVIVGT 142 (844)
T ss_pred CCCcEEEEC
Confidence 356899999
No 250
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=51.59 E-value=14 Score=29.06 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~ 160 (395)
.+.+++|+|.+-..+...+..|...| +.+..+.| ++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G--~~~~~l~G---G~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERG--YDVDYLAG---GMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcC--ceeEEeCC---cHH
Confidence 45789999999888899999999999 77777777 664
No 251
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=51.13 E-value=1.1e+02 Score=28.61 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCCccEEEEcCc-----------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC----CccEEEEc
Q psy4150 118 GETTKVIIFANY-----------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG----EFNTLIAT 182 (395)
Q Consensus 118 ~~~~r~iVF~~t-----------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g----~~~vLVaT 182 (395)
.+.+.+||+.|. ...++.|.+.|++.| +.+.. +- +++..+-.+++++|... ..+++|+.
T Consensus 6 ~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lg--F~V~~-~~---dlt~~em~~~l~~~~~~~~~~~~d~~v~~ 79 (241)
T smart00115 6 KPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLG--YEVHV-KN---NLTAEEMLEELKEFAERPEHSDSDSFVCV 79 (241)
T ss_pred CCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCC--CEEEE-ec---CCCHHHHHHHHHHHHhccccCCCCEEEEE
Confidence 456778888886 457999999999999 87764 44 79999999999999763 46666666
Q ss_pred CccccCCCCCCCCEEEEcCC-CCChhhHhhhc
Q psy4150 183 SVGEEGLDIGEIDLVICFDA-QKSPIKMVQRL 213 (395)
Q Consensus 183 ~v~~~GlDip~v~~VI~~d~-p~s~~~yiQr~ 213 (395)
+++-|. .+.|+-.|. +-+....+...
T Consensus 80 -~~sHG~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 80 -LLSHGE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred -EcCCCC----CCeEEEecCCEEEHHHHHHhc
Confidence 777773 366666654 33455555544
No 252
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=50.60 E-value=46 Score=28.67 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
..++...++.|+...+.. +.|++|.|.+...++.|-+.|=...+ ...+=|+..++- ....
T Consensus 11 ~~~~~~~~c~L~~ka~~~------g~rv~I~~~d~~~a~~lD~~LW~~~~--~sFlPH~~~~~~------------~~~~ 70 (142)
T PRK05728 11 LSALEALLCELAEKALRA------GWRVLVQCEDEEQAEALDEALWTFRD--ESFLPHGLAGEG------------PAAG 70 (142)
T ss_pred chhHHHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhcCCCC--CcCCCCCcCCCC------------CCCC
Confidence 556888899999888764 79999999999999999999865432 122223311111 0224
Q ss_pred ccEEEE-cCccccCCCCCCCCEEEEcCC
Q psy4150 176 FNTLIA-TSVGEEGLDIGEIDLVICFDA 202 (395)
Q Consensus 176 ~~vLVa-T~v~~~GlDip~v~~VI~~d~ 202 (395)
..|+|+ ++ .-+.+..+++||++.
T Consensus 71 ~PV~l~~~~----~~~~~~~~~LinL~~ 94 (142)
T PRK05728 71 QPVLLTWPG----KRNANHRDLLINLDG 94 (142)
T ss_pred CCEEEEcCC----CCCCCCCcEEEECCC
Confidence 578887 32 124456788999875
No 253
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=49.90 E-value=1.3e+02 Score=26.60 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=45.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeE-EeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASM-FVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~-lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
+.++-++-.+...++.+.+.|++..|.+.+.- .|| .+...+...+++.......++|+
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g---~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHG---YFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCC---CCChhhHHHHHHHHHHcCCCEEE
Confidence 57888999999999999999999888777655 556 66677766688887776666543
No 254
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=49.41 E-value=36 Score=27.07 Aligned_cols=66 Identities=20% Similarity=0.110 Sum_probs=44.4
Q ss_pred EEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCH---------HHHHHHHHHHhcCCccEEEEcCccccCCC
Q psy4150 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQ---------QEQKEIMKKFRAGEFNTLIATSVGEEGLD 190 (395)
Q Consensus 123 ~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~---------~~R~~~l~~Fk~g~~~vLVaT~v~~~GlD 190 (395)
.||.|.....+..+.+.|.... ..+....||--++.. ..+.+.+.+.-.+.-.|++|||.=.+|--
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~--~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~ 75 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEE--YIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGEL 75 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTT--EEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCC--EEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHH
Confidence 4788899999999999998433 566666775433332 23355666665667789999997666643
No 255
>KOG0335|consensus
Probab=49.04 E-value=38 Score=35.29 Aligned_cols=93 Identities=19% Similarity=0.298 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhhc----cC--CCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 100 FIRLREILESHFRLHAE----KG--ETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~----~~--~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
..-|.-++..++....+ .. ...++||.++|++.|+.+++.-++.. ..+.+....| +.+-. ....+
T Consensus 126 ~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~yg---g~~~~----~q~~~ 198 (482)
T KOG0335|consen 126 AAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYG---GTDLG----AQLRF 198 (482)
T ss_pred HHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeC---Ccchh----hhhhh
Confidence 34455666665554111 01 24789999999999999998776532 2266666777 52222 22334
Q ss_pred hcCCccEEEEcC-----ccccC-CCCCCCCEEEE
Q psy4150 172 RAGEFNTLIATS-----VGEEG-LDIGEIDLVIC 199 (395)
Q Consensus 172 k~g~~~vLVaT~-----v~~~G-lDip~v~~VI~ 199 (395)
-...++|||||. ++++| |.++.+.++|.
T Consensus 199 ~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 199 IKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred hccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 567899999995 56666 66667765553
No 256
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=48.85 E-value=39 Score=36.24 Aligned_cols=58 Identities=10% Similarity=0.354 Sum_probs=52.6
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
+-+||-.+-..--.+=.+.|...| +.+.++++ .++..+|..++..+..|.+++|.-++
T Consensus 58 G~TLVVSPLiSLM~DQV~~l~~~G--i~A~~lnS---~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQLEAAG--IRAAYLNS---TLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred CCEEEECchHHHHHHHHHHHHHcC--ceeehhhc---ccCHHHHHHHHHHHhcCceeEEEECc
Confidence 688999998888888888899999 99999999 99999999999999999999886654
No 257
>KOG0340|consensus
Probab=47.79 E-value=46 Score=33.45 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=45.1
Q ss_pred hccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 115 AEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 115 ~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
++...+.=++||++|++-+-.+++.|...|. .+++..+.| +++.-.....+ ...-.++|+|+
T Consensus 70 sedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivG---G~d~i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 70 SEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVG---GTDMIMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred ccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEc---cHHHhhhhhhc----ccCCCeEecCc
Confidence 3334556689999999999999998877653 488999999 77765544443 23566777775
No 258
>KOG0342|consensus
Probab=46.67 E-value=81 Score=32.96 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=39.7
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcc---cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKP---LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~---~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
..+..+||-|+||+-|-.++..+++ ..+.+.+.++.| +-+.. .-.+.... .+++||||+
T Consensus 152 r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viG---G~~~~---~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 152 RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIG---GNNFS---VEADKLVK-GCNILIATP 213 (543)
T ss_pred CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeC---Cccch---HHHHHhhc-cccEEEeCC
Confidence 3567899999999988777655443 344577888887 43322 22233444 799999997
No 259
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=46.56 E-value=12 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=23.9
Q ss_pred hHHHHHHHHhHHHHHHHHcccchhhhhcccCCCCCCCCc
Q psy4150 235 HNFQTSMQTCKSYVEKIINNKSIYANLAKNGPRMIPAHV 273 (395)
Q Consensus 235 ~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~i~~~~ 273 (395)
+.++.+++.+.++.++....+..|+..++..|..+...+
T Consensus 4 D~iT~SM~~ai~eT~rRR~~Q~~yN~~h~ItP~ti~k~i 42 (44)
T PF12344_consen 4 DKITDSMQKAIDETNRRREIQIAYNKEHGITPKTIKKKI 42 (44)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcCccC
Confidence 456778888899999999999999999999988877654
No 260
>PRK13767 ATP-dependent helicase; Provisional
Probab=46.38 E-value=45 Score=37.60 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=51.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHc-----------ccC---CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLK-----------PLE---PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV- 184 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~-----------~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v- 184 (395)
+.++|+.++++..+.++...|. ..| +.+++...|| +.++.++...+. ...+|||||+-
T Consensus 84 ~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~G---dt~~~~r~~~l~----~~p~IlVtTPE~ 156 (876)
T PRK13767 84 KVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTG---DTSSYEKQKMLK----KPPHILITTPES 156 (876)
T ss_pred CeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcC---CCCHHHHHHHHh----CCCCEEEecHHH
Confidence 4579999999999987765433 111 2478889999 999888876554 35789999962
Q ss_pred ----cc-cCC--CCCCCCEEEEcCC
Q psy4150 185 ----GE-EGL--DIGEIDLVICFDA 202 (395)
Q Consensus 185 ----~~-~Gl--Dip~v~~VI~~d~ 202 (395)
+. ... .+..+.+||.-.+
T Consensus 157 L~~ll~~~~~~~~l~~l~~VVIDE~ 181 (876)
T PRK13767 157 LAILLNSPKFREKLRTVKWVIVDEI 181 (876)
T ss_pred HHHHhcChhHHHHHhcCCEEEEech
Confidence 11 111 3567788875443
No 261
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=46.09 E-value=22 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=31.4
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVT 160 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~ 160 (395)
.....+||+|.+...+..++..|...| +. +..+.| ++.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G--~~~v~~l~G---G~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELG--FKNVYLLDG---GYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcC--CCceEEecC---CHH
Confidence 456899999999999999999999988 65 777777 663
No 262
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=45.73 E-value=54 Score=35.68 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=45.7
Q ss_pred CccEEEEcCcHHHHHHHHHHHcc----cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKP----LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIG 192 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~----~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip 192 (395)
+..++|.++|+.-|...++.+.. .| +++.++.| +++..+|.... .++|+++|+- +-|.|.-
T Consensus 144 G~~v~VvTptreLA~qdae~~~~l~~~lG--lsv~~i~g---g~~~~~r~~~y------~~dIvygT~~-e~~FDyL 208 (656)
T PRK12898 144 GLPVHVITVNDYLAERDAELMRPLYEALG--LTVGCVVE---DQSPDERRAAY------GADITYCTNK-ELVFDYL 208 (656)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHHhhcC--CEEEEEeC---CCCHHHHHHHc------CCCEEEECCC-chhhhhc
Confidence 57899999999998877776654 45 89999999 88877665433 4689999963 4455543
No 263
>PRK01172 ski2-like helicase; Provisional
Probab=44.67 E-value=71 Score=34.76 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=57.8
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
..+..|.-...-.+...+.. +.++|+.++++.-|...++.+.+.. .++++...+| +.+.... +
T Consensus 45 pTGSGKTl~a~lail~~l~~------~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G---~~~~~~~------~- 108 (674)
T PRK01172 45 PTAAGKTLIAYSAIYETFLA------GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIG---DYDDPPD------F- 108 (674)
T ss_pred CCCchHHHHHHHHHHHHHHh------CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeC---CCCCChh------h-
Confidence 34556765544333343332 4789999999999999888776421 1277888888 5543221 1
Q ss_pred cCCccEEEEcC-----ccccC-CCCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATS-----VGEEG-LDIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~~G-lDip~v~~VI~~d~ 202 (395)
....+|+|||. ++.++ ..+..+++||.=.+
T Consensus 109 ~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 109 IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecc
Confidence 13579999997 23333 33677888885443
No 264
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=43.58 E-value=35 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=28.4
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCC-ceeEEec
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMV-KASMFVG 154 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~-~~~~lhg 154 (395)
..+.++||+|.+...+...+..|...| + .+..+.|
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G--~~~v~~l~G 89 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALG--GKPVALLDG 89 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcC--CCCEEEeCC
Confidence 346789999999888888899998888 5 5677777
No 265
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=43.22 E-value=61 Score=36.51 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=44.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV 184 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v 184 (395)
+..++|-|+|+.-|...++.+..... ++.+.+++| +++..+|.... .++|+++|+-
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~g---g~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYP---DMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeC---CCCHHHHHHHh------CCCEEEECCh
Confidence 46799999999988888877765321 288999999 99998886665 4799999963
No 266
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=42.42 E-value=91 Score=35.40 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=51.6
Q ss_pred eeccccHHHH-HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHH
Q psy4150 93 YAWSHLKFIR-LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 93 ~~~~~~K~~~-L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
...++.|.-. ++-++..... +..++|.++|+..|...++.+...+. ++++.++.| +++..++...+
T Consensus 114 aqTGeGKTLAf~LP~l~~aL~-------g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~G---G~~~~eq~~~y- 182 (970)
T PRK12899 114 MQTGEGKTLTAVMPLYLNALT-------GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVS---GSPLEKRKEIY- 182 (970)
T ss_pred eCCCCChHHHHHHHHHHHHhh-------cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeC---CCCHHHHHHHc-
Confidence 3344555443 3344444332 24588889999999988888765431 278888999 99988876553
Q ss_pred HHhcCCccEEEEcCc
Q psy4150 170 KFRAGEFNTLIATSV 184 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v 184 (395)
.++|+|||+-
T Consensus 183 -----~~DIVygTPg 192 (970)
T PRK12899 183 -----QCDVVYGTAS 192 (970)
T ss_pred -----CCCEEEECCC
Confidence 3899999963
No 267
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=41.27 E-value=1.6e+02 Score=32.04 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=60.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEecc----------------------CCCCCHHHHHHHHHHHhcCCcc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ----------------------SSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~----------------------~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
+.++||-|++...|+.+++.|....|.-.+.++-++ .+.--...|..++..+..++..
T Consensus 57 ~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R~~~l~~L~~~~~~ 136 (652)
T PRK05298 57 QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLRHSATKSLLERRDV 136 (652)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHHHHHHHHHHhCCCE
Confidence 468999999999999999999877554445555211 0011245788999999887766
Q ss_pred EEEEcCccccCCCCCC----CCEEEEcCCCCChhhHhhh
Q psy4150 178 TLIATSVGEEGLDIGE----IDLVICFDAQKSPIKMVQR 212 (395)
Q Consensus 178 vLVaT~v~~~GlDip~----v~~VI~~d~p~s~~~yiQr 212 (395)
|+|+|-.+-.++=-|. ..+.+..+-..+...++.+
T Consensus 137 ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~ 175 (652)
T PRK05298 137 IVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRR 175 (652)
T ss_pred EEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHH
Confidence 7777744446655443 3455555655565555443
No 268
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=40.34 E-value=23 Score=29.21 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCC--ceeEEeccCCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMV--KASMFVGQSSGVT 160 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~--~~~~lhg~~~~~~ 160 (395)
.+.+++|+|.+...+...+..|...| + .+..+.| ++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G--~~~~v~~l~G---G~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELG--LERFVRDIIG---GLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcC--Cccceeeecc---hHH
Confidence 46789999999888888999999999 6 5788888 763
No 269
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=40.29 E-value=58 Score=30.23 Aligned_cols=76 Identities=12% Similarity=0.094 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
--+.|.+++.... ..+.++|+++.... -+.|.+.|.+.| +.+..+.-|...........+...+..+.+++
T Consensus 103 ~~e~L~~~~~~~~------~~~~~vL~~rg~~~-r~~l~~~L~~~G--~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~ 173 (240)
T PRK09189 103 DGVRLAETVAAAL------APTARLLYLAGRPR-APVFEDRLAAAG--IPFRVAECYDMLPVMYSPATLSAILGGAPFDA 173 (240)
T ss_pred CHHHHHHHHHHhc------CCCCcEEEeccCcc-cchhHHHHHhCC--CeeEEEEEEEeecCCCChHHHHHHHhcCCCCE
Confidence 3455555554432 13467777766544 488999999888 55433332211111222234556666776665
Q ss_pred EEEcC
Q psy4150 179 LIATS 183 (395)
Q Consensus 179 LVaT~ 183 (395)
++-|+
T Consensus 174 i~f~S 178 (240)
T PRK09189 174 VLLYS 178 (240)
T ss_pred EEEeC
Confidence 55443
No 270
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=39.55 E-value=87 Score=27.24 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=60.2
Q ss_pred eeeeccccHHH-HHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 91 SEYAWSHLKFI-RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 91 ~~~~~~~~K~~-~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
..|...++++. .++.|+...... +.|++|-|.+...++.|-+.|=...+ ...+=||..+ +
T Consensus 5 ~FY~l~~~~~~~~~c~L~~k~~~~------G~rvlI~~~d~~q~e~LD~~LWt~~~--~sFiPH~~~~-----------e 65 (144)
T COG2927 5 TFYLLSESTLLAAACRLAEKAWRS------GWRVLIQCEDEAQAEALDEHLWTFSA--ESFIPHNLAG-----------E 65 (144)
T ss_pred EEEEecchhHHHHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHHHhhhccch--hcccCCccCC-----------C
Confidence 45666677777 788888887664 79999999999999999999866542 2233344111 0
Q ss_pred HHhcCCccEEEEcCccccCCCCCCCCEEEEcCCC
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p 203 (395)
....+ --|+|++... -=+-+.++++||.--+
T Consensus 66 ~~~~~-qPIli~~~~~--~pn~~~~~~lInl~d~ 96 (144)
T COG2927 66 PPPAG-QPILIAWPGG--NPNSARVDLLINLADE 96 (144)
T ss_pred CCCCC-CCEEEEcCCC--CCCCCceeEEEecccc
Confidence 11223 3488888532 2344567899988654
No 271
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=38.97 E-value=1.7e+02 Score=33.09 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=46.1
Q ss_pred CCccEEEEcCc----HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q psy4150 119 ETTKVIIFANY----RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDI 191 (395)
Q Consensus 119 ~~~r~iVF~~t----~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDi 191 (395)
.+..|-|.+.+ +..++++..++...| +++.++.| ++++.+|..+.. ++|+.+|+.. -|.|.
T Consensus 122 ~G~~VhvvT~ndyLA~RD~e~m~~l~~~lG--l~v~~i~~---~~~~~err~~Y~------~dI~YGT~~e-~gFDY 186 (913)
T PRK13103 122 SGKGVHVVTVNDYLARRDANWMRPLYEFLG--LSVGIVTP---FQPPEEKRAAYA------ADITYGTNNE-FGFDY 186 (913)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHhcccC--CEEEEECC---CCCHHHHHHHhc------CCEEEEcccc-cccch
Confidence 35777777777 445666667777778 99999999 999999998887 8999999753 34443
No 272
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=38.37 E-value=1.5e+02 Score=33.36 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=70.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHH----HHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVV----VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~----ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..+.|-....--|.+++.. .+..+.|++.+|+.- ++.+.+++...+..+.+..++| +..+.+|. .
T Consensus 94 TgSGKTe~FllPIld~~l~----~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~G---dt~~~~r~----~ 162 (851)
T COG1205 94 TGSGKTESFLLPILDHLLR----DPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTG---DTPPEERR----A 162 (851)
T ss_pred CCCchhHHHHHHHHHHHhh----CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecC---CCChHHHH----H
Confidence 4556777755444444333 345688999999655 5566666666654578888999 88888887 4
Q ss_pred HhcCCccEEEEcC-c----cccCCC-----CCCCCEEEEcCCCC-------ChhhHhhhccccccc
Q psy4150 171 FRAGEFNTLIATS-V----GEEGLD-----IGEIDLVICFDAQK-------SPIKMVQRLGRTGRK 219 (395)
Q Consensus 171 Fk~g~~~vLVaT~-v----~~~GlD-----ip~v~~VI~~d~p~-------s~~~yiQr~GRagR~ 219 (395)
+..+..+||+++. . +-+..| +..+.+||.=.+.. ++.-.+=|..|..|.
T Consensus 163 ~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~ 228 (851)
T COG1205 163 IIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRR 228 (851)
T ss_pred HHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhc
Confidence 5567899999884 2 222222 22456666443332 344445555555554
No 273
>PF13245 AAA_19: Part of AAA domain
Probab=38.19 E-value=92 Score=23.65 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=34.9
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVL 140 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L 140 (395)
....|-..+..++..+...+.. .+.+++|.+.|+..++.|.+.|
T Consensus 19 pGtGKT~~~~~~i~~l~~~~~~--~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 19 PGTGKTTTLAARIAELLAARAD--PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCHHHHHHHHHHHHHHHhcC--CCCeEEEECCCHHHHHHHHHHH
Confidence 4566998888888887743211 2689999999999999999999
No 274
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=36.96 E-value=34 Score=26.95 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+.+++|+|.+-..+...+..|...| +. +..+.|
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G--~~~v~~l~G 94 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERG--FKNVYQLKG 94 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhC--Ccceeeech
Confidence 45789999999777778888998888 64 666777
No 275
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=36.77 E-value=99 Score=29.49 Aligned_cols=75 Identities=12% Similarity=0.321 Sum_probs=50.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----cccc-CCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEE-GLDI 191 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~-GlDi 191 (395)
+...+||.|.+--.|-+|...|+... ....+.-|.+- .+.-++....+ +.+.+.|.|||+ +++. .+.+
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaK--H~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l 199 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAK--HIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSL 199 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHh--hccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCc
Confidence 45678999999999999999998752 22445444442 24556665555 457889999997 3333 3666
Q ss_pred CCCCEEE
Q psy4150 192 GEIDLVI 198 (395)
Q Consensus 192 p~v~~VI 198 (395)
.++.+||
T Consensus 200 ~~l~~iv 206 (252)
T PF14617_consen 200 SNLKRIV 206 (252)
T ss_pred ccCeEEE
Confidence 6666655
No 276
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=36.67 E-value=1.6e+02 Score=23.26 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=38.4
Q ss_pred cEEEEcCcHH----H-HHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCC-CCCCCC
Q psy4150 122 KVIIFANYRV----V-VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGL-DIGEID 195 (395)
Q Consensus 122 r~iVF~~t~~----~-ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~Gl-Dip~v~ 195 (395)
++|+-|.+-- . +..+.+.|.++| +.+.+.|. .++.- ... ...++++|+|.-+...+ |+|.+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~g--i~~~v~~~---~~~e~------~~~-~~~~D~iv~t~~~~~~~~~ip~~~ 71 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHN--IPVELIQC---RVNEI------ETY-MDGVHLICTTARVDRSFGDIPLVH 71 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCC--CeEEEEEe---cHHHH------hhh-cCCCCEEEECCccccccCCCCEEE
Confidence 6888888643 2 466667888888 77777775 44322 111 14578999987665555 355333
No 277
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=36.33 E-value=2.6e+02 Score=27.55 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=6.1
Q ss_pred HHHHHHhcCCccEEE
Q psy4150 166 EIMKKFRAGEFNTLI 180 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLV 180 (395)
+..+.++...++++|
T Consensus 69 ~~~~~~~~~~~d~ii 83 (345)
T cd08171 69 RLKKNPAVQEADMIF 83 (345)
T ss_pred HHHHHHhhcCCCEEE
Confidence 333344444444444
No 278
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=35.86 E-value=1.5e+02 Score=21.78 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=37.3
Q ss_pred EEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCcccc
Q psy4150 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEE 187 (395)
Q Consensus 123 ~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~ 187 (395)
.|+.|.....+..+.+..... ..+....| .....+....++.+... ..|++|+|--..
T Consensus 2 ~l~ivEg~~da~~~~~~~~~~---~~~~~~~G---~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~ 59 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGFG---GNVVALGG---HLLKKEIIKLLKRLAKK-KEVILATDPDRE 59 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCCC---EEEEEEee---eecHHHHHHHHHHHhcC-CEEEEEcCCChh
Confidence 477888888888888876432 34555556 44445566677766554 568888875433
No 279
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=35.27 E-value=45 Score=26.04 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=28.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
...+++++|.+-..+...+..|.+.|.. .+..+.|
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~-~v~~l~g 87 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAG-EAYVLEG 87 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCc-cEEEeeC
Confidence 4578999999988888899999888832 5676887
No 280
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=35.05 E-value=1.1e+02 Score=26.86 Aligned_cols=84 Identities=10% Similarity=0.072 Sum_probs=56.0
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
...++...++.|+...+.. +.|++|.|.....++.|-+.|=...+ ...+=||..++- -..
T Consensus 10 ~~~~~~~~acrL~~Ka~~~------G~rv~I~~~d~~~~~~LD~~LWtf~~--~SFlPH~~~~~~------------~~a 69 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYS------DLKSVILTADADQQEMLNKNLWTYSR--KQFIPHGSKLDP------------QPE 69 (154)
T ss_pred CCChHHHHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHhcCCCC--CCCCCCCCCCCC------------CCC
Confidence 4677999999999998765 79999999999999999998865432 122224411110 022
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCC
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDA 202 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~ 202 (395)
...|+++++. . +....+++||++.
T Consensus 70 ~~PV~L~~~~--~--~p~~~~vLiNL~~ 93 (154)
T PRK06646 70 KQPIYITDEL--Q--NPNNASVLVIISP 93 (154)
T ss_pred CCCEEEecCC--C--CCCCCCEEEECCC
Confidence 4568887532 1 2236778899876
No 281
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=35.04 E-value=39 Score=27.06 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=29.3
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc--eeEEeccCCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK--ASMFVGQSSGVT 160 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~--~~~lhg~~~~~~ 160 (395)
.+.+++|||.+-..+...+..|...| +. +..+.| +++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G--~~~~v~~l~g---G~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAG--LPNPVAALRN---GTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCC--CCcceeEecC---CHH
Confidence 35689999999877777888999888 63 677888 764
No 282
>KOG1802|consensus
Probab=33.87 E-value=2.1e+02 Score=31.35 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.|.-....++..+... ..+++||-.++.-.++.|++.+.+.| +++..+.+
T Consensus 437 GKTvtsa~IVyhl~~~-----~~~~VLvcApSNiAVDqLaeKIh~tg--LKVvRl~a 486 (935)
T KOG1802|consen 437 GKTVTSATIVYHLARQ-----HAGPVLVCAPSNIAVDQLAEKIHKTG--LKVVRLCA 486 (935)
T ss_pred CceehhHHHHHHHHHh-----cCCceEEEcccchhHHHHHHHHHhcC--ceEeeeeh
Confidence 3555555555554432 46899999999999999999999999 88877766
No 283
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=33.83 E-value=2.6e+02 Score=23.77 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=48.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
..+...+.|.+.+.++ .+-.|++......+.+...+...+ ..+.+++| ...+.+-....
T Consensus 31 sa~~n~~~L~~q~~~f----------~p~~v~i~~~~~~~~l~~~~~~~~--~~~~v~~G---------~~~l~~~~~~~ 89 (129)
T PF02670_consen 31 SAGSNIEKLAEQAREF----------KPKYVVIADEEAYEELKKALPSKG--PGIEVLSG---------PEGLEELAEEP 89 (129)
T ss_dssp EESSTHHHHHHHHHHH----------T-SEEEESSHHHHHHHHHHHHHTT--SSSEEEES---------HHHHHHHHTHT
T ss_pred EcCCCHHHHHHHHHHh----------CCCEEEEcCHHHHHHHHHHhhhcC--CCCEEEeC---------hHHHHHHhcCC
Confidence 3466778888877775 333677777788888888886555 56778888 23334444447
Q ss_pred CccEEEEcCccccCCC
Q psy4150 175 EFNTLIATSVGEEGLD 190 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlD 190 (395)
+.+++|+--++..||-
T Consensus 90 ~~D~vv~Ai~G~aGL~ 105 (129)
T PF02670_consen 90 EVDIVVNAIVGFAGLK 105 (129)
T ss_dssp T-SEEEE--SSGGGHH
T ss_pred CCCEEEEeCcccchHH
Confidence 8888887777666653
No 284
>KOG1132|consensus
Probab=33.83 E-value=3.5e+02 Score=30.59 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC-----CCCceeEEeccCCCCCHHHHHHHHHHHhc-
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-----PMVKASMFVGQSSGVTQQEQKEIMKKFRA- 173 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~-----~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~- 173 (395)
...|.+.|..... .-...+|||+++-..-+.+.......+ ...+. .+.. --+..+=.+++..|.+
T Consensus 546 ~~~lg~~i~~v~r-----vVp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vE---Pr~k~~f~e~m~~y~~~ 616 (945)
T KOG1132|consen 546 LSELGEAILNVAR-----VVPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVE---PRSKSEFTEVMSRYYNA 616 (945)
T ss_pred HHHHHHHHHHHHh-----hcccceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceec---cCCccchHHHHHHHHHH
Confidence 3445555554322 224559999999887777755544322 11222 2222 1122333444555543
Q ss_pred -------CCccEEEEcCccccCCCCCC--CCEEEEcCCCC
Q psy4150 174 -------GEFNTLIATSVGEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 174 -------g~~~vLVaT~v~~~GlDip~--v~~VI~~d~p~ 204 (395)
|..-+-||---+++|+|+.+ ...||..++|-
T Consensus 617 i~~pes~ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 617 IADPESSGAVFFAVCRGKVSEGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred hhCccccceEEEEEecccccCCCCccccCCceeEEecCCC
Confidence 23334577788899999985 56889888773
No 285
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=33.70 E-value=2.5e+02 Score=28.10 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=40.1
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHH-----HHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRV-----VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~-----~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l 168 (395)
.+....+..|.+++... ++|++|.+.... ..+.+.+.|...+ +.+..+.+...+-+-..=.+..
T Consensus 8 ~fG~g~l~~l~~~~~~~---------g~r~livt~~~~~~~~g~~~~v~~~L~~~~--~~~~~~~~v~~~p~~~~v~~~~ 76 (380)
T cd08185 8 VFGAGKLNELGEEALKP---------GKKALIVTGNGSSKKTGYLDRVIELLKQAG--VEVVVFDKVEPNPTTTTVMEGA 76 (380)
T ss_pred EECcCHHHHHHHHHHhc---------CCeEEEEeCCCchhhccHHHHHHHHHHHcC--CeEEEeCCccCCCCHHHHHHHH
Confidence 34445555555554431 256666664321 3355666666655 5554444422233444445555
Q ss_pred HHHhcCCccEEEEc
Q psy4150 169 KKFRAGEFNTLIAT 182 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT 182 (395)
+.++...++++|+-
T Consensus 77 ~~~~~~~~D~Iiav 90 (380)
T cd08185 77 ALAREEGCDFVVGL 90 (380)
T ss_pred HHHHHcCCCEEEEe
Confidence 66666666666644
No 286
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=32.98 E-value=42 Score=26.10 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=28.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGV 159 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~ 159 (395)
+.+++++|.+-..+...+..|...| +.+..+.| ++
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G--~~v~~l~G---G~ 90 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMG--WEVYVLEG---GL 90 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcC--CEEEEecC---cH
Confidence 4689999999777778888898888 66666777 65
No 287
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=32.33 E-value=47 Score=26.71 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=28.6
Q ss_pred CCccEEEEcCcH--HHHHHHHHHHcccCCCCceeEEeccCCCC
Q psy4150 119 ETTKVIIFANYR--VVVAEIFDVLKPLEPMVKASMFVGQSSGV 159 (395)
Q Consensus 119 ~~~r~iVF~~t~--~~ae~l~~~L~~~~~~~~~~~lhg~~~~~ 159 (395)
.+.+++|+|++. ..+..++..|...| +.+..+.| ++
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G--~~v~~l~G---G~ 100 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELG--FPVKEMIG---GL 100 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcC--CeEEEecC---CH
Confidence 467899999975 36788888998888 77778887 65
No 288
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=32.31 E-value=46 Score=26.19 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=29.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCC-ceeEEeccCCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMV-KASMFVGQSSGVT 160 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~-~~~~lhg~~~~~~ 160 (395)
+.+++|+|++...+...+..|.+.| + .+..+.| ++.
T Consensus 58 ~~~vv~~c~~g~rs~~~~~~l~~~G--~~~v~~l~G---G~~ 94 (101)
T cd01528 58 DKDIVVLCHHGGRSMQVAQWLLRQG--FENVYNLQG---GID 94 (101)
T ss_pred CCeEEEEeCCCchHHHHHHHHHHcC--CccEEEecC---CHH
Confidence 5789999999888888899998888 5 4667777 654
No 289
>PHA03371 circ protein; Provisional
Probab=32.20 E-value=39 Score=31.54 Aligned_cols=42 Identities=24% Similarity=0.270 Sum_probs=29.0
Q ss_pred ccccCCCCCCCCEE-EEcCCCC-------------ChhhHhhhccccccccCceEE
Q psy4150 184 VGEEGLDIGEIDLV-ICFDAQK-------------SPIKMVQRLGRTGRKRNGRCV 225 (395)
Q Consensus 184 v~~~GlDip~v~~V-I~~d~p~-------------s~~~yiQr~GRagR~~~g~~i 225 (395)
+++|-||+|+-+-+ |..|++. +-..|+|.||||--.|.+.-+
T Consensus 29 LaGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF 84 (240)
T PHA03371 29 LAGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKF 84 (240)
T ss_pred hcCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceE
Confidence 56788899988877 6555554 345689999998555655543
No 290
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=32.19 E-value=3.4e+02 Score=27.17 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=45.1
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHH----HHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRV----VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~----~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
.+....+..+.+++..+ ...|++|++...- ..+.+.+.|.+.+ +.+..+.+-..+-+...=.+..+
T Consensus 5 ~~G~g~~~~l~~~~~~~--------~~~r~livt~~~~~~~g~~~~v~~~L~~~g--i~~~~~~~v~~~p~~~~v~~~~~ 74 (375)
T cd08194 5 IIGEGAVDETGAVLADL--------GGKRPLIVTDKVMVKLGLVDKLTDSLKKEG--IESAIFDDVVSEPTDESVEEGVK 74 (375)
T ss_pred EECcCHHHHHHHHHHHc--------CCCeEEEEcCcchhhcchHHHHHHHHHHCC--CeEEEECCCCCCcCHHHHHHHHH
Confidence 34455666666655542 2256666664311 3456667776666 55555544333444555566777
Q ss_pred HHhcCCccEEEEc
Q psy4150 170 KFRAGEFNTLIAT 182 (395)
Q Consensus 170 ~Fk~g~~~vLVaT 182 (395)
.++...++++|+-
T Consensus 75 ~~~~~~~D~IIai 87 (375)
T cd08194 75 LAKEGGCDVIIAL 87 (375)
T ss_pred HHHhcCCCEEEEe
Confidence 7777777777754
No 291
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=31.19 E-value=3.3e+02 Score=27.33 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=47.5
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCc--HH---HHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANY--RV---VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t--~~---~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l 168 (395)
.+....+..|.+++..+ ++|++|.+.. .. ..+.+.+.|...| +.+..+.+...+-+...=.+.+
T Consensus 11 ~~G~g~~~~l~~~~~~~---------~~r~livt~~~~~~~~~~~~~v~~~L~~~g--~~~~~~~~v~~~p~~~~v~~~~ 79 (382)
T cd08187 11 IFGKGTESELGKELKKY---------GKKVLLVYGGGSIKKNGLYDRVIASLKEAG--IEVVELGGVEPNPRLETVREGI 79 (382)
T ss_pred EECCCHHHHHHHHHHHh---------CCEEEEEeCCcHHHhcCcHHHHHHHHHHcC--CeEEEECCccCCCCHHHHHHHH
Confidence 45556677776666553 2577777653 21 2466777787766 5555554433244455556677
Q ss_pred HHHhcCCccEEEEc
Q psy4150 169 KKFRAGEFNTLIAT 182 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT 182 (395)
+.++...++++|+-
T Consensus 80 ~~~~~~~~D~IIai 93 (382)
T cd08187 80 ELCKEEKVDFILAV 93 (382)
T ss_pred HHHHHcCCCEEEEe
Confidence 77777788877754
No 292
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=30.88 E-value=1e+02 Score=34.38 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=41.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHc----ccCCCCceeEEeccCCCCC-HHHHHHHHHHHhcCCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLK----PLEPMVKASMFVGQSSGVT-QQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~----~~~~~~~~~~lhg~~~~~~-~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
+.+++|.++|+.-|..-++.+. ..| +++.++.| +++ ..+|..+. .++|+++|+
T Consensus 119 G~~v~VvTpt~~LA~qd~e~~~~l~~~lG--l~v~~i~g---~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 119 GKGVHLITVNDYLAKRDAEEMGQVYEFLG--LTVGLNFS---DIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcC--CeEEEEeC---CCCcHHHHHHhc------CCCEEEECC
Confidence 6889999999888876666554 456 99999999 888 77776432 388999994
No 293
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=30.78 E-value=65 Score=23.95 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
....++||+|.+...+...+..|...|. ..+.++-|
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~-~~v~~l~g 83 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGG-TNVYNLEG 83 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCc-ccEEEecC
Confidence 4568999999998899999999999872 34556666
No 294
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=30.64 E-value=45 Score=27.77 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=29.3
Q ss_pred CCCccEEEEcC-cHHHHHHHHHHHcccCCCCceeEEeccCCCCC
Q psy4150 118 GETTKVIIFAN-YRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160 (395)
Q Consensus 118 ~~~~r~iVF~~-t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~ 160 (395)
..+.+++|||. +-..+...+..|...| +.+..+.| ++.
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G--~~v~~L~G---G~~ 122 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLG--IDVPLLEG---GYK 122 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcC--CceeEeCC---cHH
Confidence 34678999997 5566777788888888 77888888 764
No 295
>KOG0352|consensus
Probab=30.22 E-value=80 Score=32.60 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=48.8
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC--CccEEEEcC
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG--EFNTLIATS 183 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g--~~~vLVaT~ 183 (395)
+=+|||.+-...+.+=.++|.... +++..|.+ .|+..+|.+++-++..- .+++|--|+
T Consensus 62 gITIV~SPLiALIkDQiDHL~~LK--Vp~~SLNS---KlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 62 GITIVISPLIALIKDQIDHLKRLK--VPCESLNS---KLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CeEEEehHHHHHHHHHHHHHHhcC--CchhHhcc---hhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 578999999999888889998887 88999998 99999999999999875 455665554
No 296
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=30.01 E-value=40 Score=26.30 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=26.8
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
...+++|||.+-..+...+..|...| +. +..+.|
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G--~~~v~~l~G 94 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMG--LKPVYNIEG 94 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcC--hHHhEeecC
Confidence 45789999998777888888998888 55 566666
No 297
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=28.57 E-value=65 Score=24.94 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=26.6
Q ss_pred CccEEEEcCc--HHHHHHHHHHHcccCCCC-ceeEEeccCCCCC
Q psy4150 120 TTKVIIFANY--RVVVAEIFDVLKPLEPMV-KASMFVGQSSGVT 160 (395)
Q Consensus 120 ~~r~iVF~~t--~~~ae~l~~~L~~~~~~~-~~~~lhg~~~~~~ 160 (395)
..+++|+|.+ +..+...+..|...| + .+..+.| ++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G--~~~v~~l~G---G~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELG--YTDVALLEG---GLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcC--ccCEEEccC---CHH
Confidence 5789999999 455777888888887 4 4566777 653
No 298
>KOG0386|consensus
Probab=28.50 E-value=88 Score=35.56 Aligned_cols=57 Identities=25% Similarity=0.389 Sum_probs=41.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT 182 (395)
.++-||-|++-.-.. ....+....|.+.++.+.| ++.+|.....+.+.|+++||++|
T Consensus 444 ~GP~LvivPlstL~N-W~~Ef~kWaPSv~~i~YkG-----tp~~R~~l~~qir~gKFnVLlTt 500 (1157)
T KOG0386|consen 444 QGPFLIIVPLSTLVN-WSSEFPKWAPSVQKIQYKG-----TPQQRSGLTKQQRHGKFNVLLTT 500 (1157)
T ss_pred CCCeEEeccccccCC-chhhccccccceeeeeeeC-----CHHHHhhHHHHHhcccceeeeee
Confidence 467777777654333 3334445556666666666 78999999999999999999999
No 299
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=28.15 E-value=57 Score=25.65 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+..+||||.+-..+...+..|...| +. +..+.|
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G--~~~v~~~~G 99 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLG--YENVGNYPG 99 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcC--CccceecCC
Confidence 46789999999888888999999888 54 555556
No 300
>KOG0334|consensus
Probab=27.89 E-value=96 Score=35.22 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=42.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
+.=+||-++|+..+..|.+.++... -.+++....| +....+ -+..++.| ..|+|||.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vyg---g~~~~~---qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYG---GSGISQ---QIAELKRG-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecC---CccHHH---HHHHHhcC-CceEEecc
Confidence 5557999999999998887766532 1288888888 555544 46667788 88999996
No 301
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.22 E-value=3.7e+02 Score=27.09 Aligned_cols=78 Identities=9% Similarity=0.167 Sum_probs=37.0
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCc----HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANY----RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t----~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
+....+..|.+.+..+ ...+++|.+.. ....+.+.+.|.+.+ +.+..+.|-..+-+...-.+..+.
T Consensus 14 ~G~g~~~~l~~~~~~~--------g~~~~livt~~~~~~~g~~~~v~~~L~~~~--i~~~~f~~v~~np~~~~v~~~~~~ 83 (383)
T PRK09860 14 IGADSLTDAMNMMADY--------GFTRTLIVTDNMLTKLGMAGDVQKALEERN--IFSVIYDGTQPNPTTENVAAGLKL 83 (383)
T ss_pred ECcCHHHHHHHHHHhc--------CCCEEEEEcCcchhhCccHHHHHHHHHHcC--CeEEEeCCCCCCcCHHHHHHHHHH
Confidence 3444555555544432 12455554432 113445566665555 444444442222334444555556
Q ss_pred HhcCCccEEEEc
Q psy4150 171 FRAGEFNTLIAT 182 (395)
Q Consensus 171 Fk~g~~~vLVaT 182 (395)
++...++++|+.
T Consensus 84 ~~~~~~D~Iiai 95 (383)
T PRK09860 84 LKENNCDSVISL 95 (383)
T ss_pred HHHcCCCEEEEe
Confidence 666666666643
No 302
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=27.15 E-value=1.4e+02 Score=28.47 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL 143 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~ 143 (395)
+++..-.+.+..... .+..|+||.|+..+........+.
T Consensus 48 ~~l~~A~~~v~~~~~-------~~g~ILfVgTK~~a~~~V~~~A~r 86 (252)
T COG0052 48 ERLREAYKFLRRIAA-------NGGKILFVGTKKQAQEPVKEFAER 86 (252)
T ss_pred HHHHHHHHHHHHHHc-------CCCEEEEEechHHHHHHHHHHHHH
Confidence 355555555555433 367899999999998887766654
No 303
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=26.97 E-value=60 Score=24.91 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+.+++|+|.+...+...+..|...| +. +..+.|
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G--~~~v~~l~g 89 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAG--FTDVRSLAG 89 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcC--CceEEEcCC
Confidence 46799999999999999999999988 53 556666
No 304
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=26.14 E-value=63 Score=25.39 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=28.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVT 160 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~ 160 (395)
+..++|+|.+...+...+..|...| +. +..+.| +++
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G--~~~v~~l~G---G~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCG--VPRVCILDG---GIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcC--CCCEEEEeC---cHH
Confidence 4679999998778888888998888 64 667777 663
No 305
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=26.12 E-value=2.5e+02 Score=31.64 Aligned_cols=54 Identities=11% Similarity=0.140 Sum_probs=41.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHc----ccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLK----PLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV 184 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~----~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v 184 (395)
+..+-|.|+|..-|..-++.+. ..| +++.++.| +++..+|..+.. ++|+++|+.
T Consensus 122 G~~V~IvTpn~yLA~rd~e~~~~l~~~LG--lsv~~i~~---~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLG--LSVGVILS---GMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhhcC--CeEEEEcC---CCCHHHHHHhcC------CCeEEECCc
Confidence 4567888999777666555554 445 89999999 999999888854 789999963
No 306
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=25.54 E-value=78 Score=25.46 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=27.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
++.++||+|++-..+..++..|...| +. +..+.|
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G--~~~v~~l~G 111 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLG--YKNVRLYDG 111 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcC--CCCeeeeCC
Confidence 46789999999888888999999888 64 566666
No 307
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=25.45 E-value=4.6e+02 Score=26.15 Aligned_cols=78 Identities=13% Similarity=0.240 Sum_probs=39.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcH--H--HHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYR--V--VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~--~--~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
+....+..|.+++..+ ...+++|.+... + ..+.+...|.+.+ +.+..+.+-...-+...=.+..+.
T Consensus 9 ~G~g~l~~l~~~l~~~--------~~~~~livt~~~~~~~~~~~~v~~~L~~~~--~~~~~~~~v~~~p~~~~v~~~~~~ 78 (376)
T cd08193 9 FGAGSLARLGELLAAL--------GAKRVLVVTDPGILKAGLIDPLLASLEAAG--IEVTVFDDVEADPPEAVVEAAVEA 78 (376)
T ss_pred ECcCHHHHHHHHHHHc--------CCCeEEEEcCcchhhCccHHHHHHHHHHcC--CeEEEECCCCCCcCHHHHHHHHHH
Confidence 3444555555555432 124555555432 1 2455666666555 444444332223444455556666
Q ss_pred HhcCCccEEEEc
Q psy4150 171 FRAGEFNTLIAT 182 (395)
Q Consensus 171 Fk~g~~~vLVaT 182 (395)
++...++++|+-
T Consensus 79 ~~~~~~D~IIai 90 (376)
T cd08193 79 ARAAGADGVIGF 90 (376)
T ss_pred HHhcCCCEEEEe
Confidence 666666666665
No 308
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=25.20 E-value=55 Score=23.95 Aligned_cols=26 Identities=8% Similarity=0.127 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhchhhHHHHHhhhcCCCC
Q psy4150 342 NDIRTCFENITKKKKTFIDFLTQSSGEPV 370 (395)
Q Consensus 342 ~~l~~~fe~a~~~rd~~~~~~~~~~~~~~ 370 (395)
.+|+ |..|-|++||.+|++++..-.+
T Consensus 28 ~El~---eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 28 AELE---ERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHhhhc
Confidence 4566 8999999999999999875544
No 309
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=25.13 E-value=4.2e+02 Score=26.16 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=30.3
Q ss_pred EEEEc--CcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCC
Q psy4150 123 VIIFA--NYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDI 191 (395)
Q Consensus 123 ~iVF~--~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDi 191 (395)
+.+|. ++.+.++.+.+.+++.+ ..+.+-.| +=+.-+--+.+... .+.--|.|.|. ++.|-..
T Consensus 54 ~~~~~~~p~~~~v~~~~~~~~~~~--~d~IIavG---GGs~~D~aK~ia~~-~~~p~i~VPTt-agtgse~ 117 (349)
T cd08550 54 VIVFGGECSTEEVVKALCGAEEQE--ADVIIGVG---GGKTLDTAKAVADR-LDKPIVIVPTI-ASTCAAS 117 (349)
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcC--CCEEEEec---CcHHHHHHHHHHHH-cCCCEEEeCCc-cccCccc
Confidence 34453 35667777777777665 44444445 33333333333322 23333445553 4444433
No 310
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=25.07 E-value=5.5e+02 Score=25.59 Aligned_cols=79 Identities=11% Similarity=0.219 Sum_probs=42.8
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcH--H--HHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYR--V--VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~--~--~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
.+....++.|-+.+..+ ...+++|.+... + ..+.+.+.|...+ +.+..+.+...+-+...=.+..+
T Consensus 8 ~~G~g~l~~l~~~l~~~--------g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g--~~~~~~~~v~~~p~~~~v~~~~~ 77 (374)
T cd08189 8 FVGSGSLAQLPAAISQL--------GVKKVLIVTDKGLVKLGLLDKVLEALEGAG--IEYAVYDGVPPDPTIENVEAGLA 77 (374)
T ss_pred EECcCHHHHHHHHHHhc--------CCCeEEEEeCcchhhcccHHHHHHHHHhcC--CeEEEeCCCCCCcCHHHHHHHHH
Confidence 44455566665555442 124666665431 1 2455666666666 55555544322344455556667
Q ss_pred HHhcCCccEEEEc
Q psy4150 170 KFRAGEFNTLIAT 182 (395)
Q Consensus 170 ~Fk~g~~~vLVaT 182 (395)
.++...++++|+-
T Consensus 78 ~~~~~~~d~IIai 90 (374)
T cd08189 78 LYRENGCDAILAV 90 (374)
T ss_pred HHHhcCCCEEEEe
Confidence 7777777777754
No 311
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=24.87 E-value=4.7e+02 Score=23.11 Aligned_cols=93 Identities=13% Similarity=0.053 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
--....++++.++.+ -.+.+++|.-...-....++.+|.+.| ..+...+. .. .+..+.+ .+.+|
T Consensus 27 ~~~a~v~l~~~~~~~----l~gk~vlViG~G~~~G~~~a~~L~~~g--~~V~v~~r---~~--~~l~~~l-----~~aDi 90 (168)
T cd01080 27 TPAGILELLKRYGID----LAGKKVVVVGRSNIVGKPLAALLLNRN--ATVTVCHS---KT--KNLKEHT-----KQADI 90 (168)
T ss_pred hHHHHHHHHHHcCCC----CCCCEEEEECCcHHHHHHHHHHHhhCC--CEEEEEEC---Cc--hhHHHHH-----hhCCE
Confidence 344445556555432 345777777766555667999999988 66665555 22 2222222 34677
Q ss_pred EEEcCccccCCC---CCCCCEEEEcCCCCChh
Q psy4150 179 LIATSVGEEGLD---IGEIDLVICFDAQKSPI 207 (395)
Q Consensus 179 LVaT~v~~~GlD---ip~v~~VI~~d~p~s~~ 207 (395)
+|++.-...=++ +..-.+||+...|.+..
T Consensus 91 VIsat~~~~ii~~~~~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGKPGLVKGDMVKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCCCceecHHHccCCeEEEEccCCCccc
Confidence 665543322122 23345889999998776
No 312
>KOG0351|consensus
Probab=24.83 E-value=1.4e+02 Score=33.97 Aligned_cols=58 Identities=16% Similarity=0.203 Sum_probs=49.3
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC--CccEEEEcC
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG--EFNTLIATS 183 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g--~~~vLVaT~ 183 (395)
+=+||-.+-..-.++....|...+ +++..|+| +++..+|..+++.+..| .+++|--|+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~--I~a~~L~s---~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKG--IPACFLSS---IQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcC--cceeeccc---cccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 345677777788888888887777 99999999 99999999999999999 888887665
No 313
>COG1204 Superfamily II helicase [General function prediction only]
Probab=24.80 E-value=2e+02 Score=32.03 Aligned_cols=84 Identities=18% Similarity=0.343 Sum_probs=57.7
Q ss_pred CccEEEEcCcHHHHHHHHHHHc---ccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC----ccc-cCCC-
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLK---PLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS----VGE-EGLD- 190 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~---~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~----v~~-~GlD- 190 (395)
+.++|--|+++.-|++.++.+. ..| +++...+| +++.... .-+.++|+|+|. ++- ...+
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~G--irV~~~Tg---D~~~~~~-------~l~~~~ViVtT~EK~Dsl~R~~~~~ 143 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELG--IRVGISTG---DYDLDDE-------RLARYDVIVTTPEKLDSLTRKRPSW 143 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcC--CEEEEecC---Ccccchh-------hhccCCEEEEchHHhhHhhhcCcch
Confidence 5799999999999999999888 677 99999999 6653321 246789999994 222 2222
Q ss_pred CCCCCEEEEcCCC--------CChhhHhhhccc
Q psy4150 191 IGEIDLVICFDAQ--------KSPIKMVQRLGR 215 (395)
Q Consensus 191 ip~v~~VI~~d~p--------~s~~~yiQr~GR 215 (395)
+.+|++||.=+.. +..++.+.|+-|
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~ 176 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR 176 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHh
Confidence 3478888754332 244555555543
No 314
>KOG0337|consensus
Probab=24.67 E-value=1.6e+02 Score=30.40 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=52.5
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC------ccccCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS------VGEEGL 189 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~------v~~~Gl 189 (395)
..+-|++|-++|++.+....+.+++.|. ..++..+.| +-+-+++...+ ++.-+|++||+ .++.-+
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~g---gD~~eeqf~~l----~~npDii~ATpgr~~h~~vem~l 160 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVG---GDSIEEQFILL----NENPDIIIATPGRLLHLGVEMTL 160 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcc---cchHHHHHHHh----ccCCCEEEecCceeeeeehheec
Confidence 3467999999999999998888887663 356665555 44444333222 24678899996 345567
Q ss_pred CCCCCCEEEE
Q psy4150 190 DIGEIDLVIC 199 (395)
Q Consensus 190 Dip~v~~VI~ 199 (395)
++..|.+|+.
T Consensus 161 ~l~sveyVVf 170 (529)
T KOG0337|consen 161 TLSSVEYVVF 170 (529)
T ss_pred cccceeeeee
Confidence 8889999984
No 315
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=24.18 E-value=1.5e+02 Score=25.96 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=52.8
Q ss_pred cccHHHH-HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 96 SHLKFIR-LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 96 ~~~K~~~-L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
+..|-.. |-+++.+.+.. ..|+||..+|+-.++.+++.|+... ..+|. ..-.. ..+...
T Consensus 14 GaGKTr~vlp~~~~~~i~~------~~rvLvL~PTRvva~em~~aL~~~~-----~~~~t---~~~~~------~~~g~~ 73 (148)
T PF07652_consen 14 GAGKTRRVLPEIVREAIKR------RLRVLVLAPTRVVAEEMYEALKGLP-----VRFHT---NARMR------THFGSS 73 (148)
T ss_dssp TSSTTTTHHHHHHHHHHHT------T--EEEEESSHHHHHHHHHHTTTSS-----EEEES---TTSS----------SSS
T ss_pred CCCCcccccHHHHHHHHHc------cCeEEEecccHHHHHHHHHHHhcCC-----cccCc---eeeec------cccCCC
Confidence 3445554 66777777664 6899999999999999999997543 33333 11111 112222
Q ss_pred CccEEEEcC----ccccCCCCCCCCEEEEcCCCCChhhHhhhcc
Q psy4150 175 EFNTLIATS----VGEEGLDIGEIDLVICFDAQKSPIKMVQRLG 214 (395)
Q Consensus 175 ~~~vLVaT~----v~~~GlDip~v~~VI~~d~p~s~~~yiQr~G 214 (395)
-+.+ .|.. -+..|...++.++||+=.+.+.-..-|--.|
T Consensus 74 ~i~v-Mc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg 116 (148)
T PF07652_consen 74 IIDV-MCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARG 116 (148)
T ss_dssp SEEE-EEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHH
T ss_pred cccc-cccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhhe
Confidence 2232 2221 1334667777888887777664433333333
No 316
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=23.76 E-value=1.5e+02 Score=25.40 Aligned_cols=38 Identities=11% Similarity=0.125 Sum_probs=30.5
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~ 160 (395)
...++||+|.+...+...+..|...|. ..+..+.| ++.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~-~~v~~L~G---G~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTV-KPVFVLEG---GTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCC-cCeEEecC---cHH
Confidence 357899999998888888889988882 36888888 653
No 317
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=23.76 E-value=3.4e+02 Score=20.90 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=23.9
Q ss_pred CccEEEEcC------cHHHHHHHHHHHcccCCCCceeEE
Q psy4150 120 TTKVIIFAN------YRVVVAEIFDVLKPLEPMVKASMF 152 (395)
Q Consensus 120 ~~r~iVF~~------t~~~ae~l~~~L~~~~~~~~~~~l 152 (395)
..+++||+. .+..|..+.++|.+.+ +....+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--i~y~~i 43 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG--VDFGTF 43 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--CCeEEE
Confidence 379999986 6788889999999988 544433
No 318
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=23.71 E-value=5.8e+02 Score=25.28 Aligned_cols=47 Identities=19% Similarity=0.323 Sum_probs=23.2
Q ss_pred HHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEc
Q psy4150 134 AEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182 (395)
Q Consensus 134 e~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT 182 (395)
+.+...|...+ +.+..+.+-...-+...-.++++.++....+++|+.
T Consensus 41 ~~v~~~L~~~~--~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~Iiai 87 (370)
T cd08551 41 DKVIDSLKEAG--IEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAV 87 (370)
T ss_pred HHHHHHHHHcC--CeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 35555665555 444333332223344444555566666566666644
No 319
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=23.67 E-value=3e+02 Score=25.21 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=44.4
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCC---C--CCHHHHHHHHHHHhcCCc-cEEEEcCccccC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSS---G--VTQQEQKEIMKKFRAGEF-NTLIATSVGEEG 188 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~---~--~~~~~R~~~l~~Fk~g~~-~vLVaT~v~~~G 188 (395)
.+.++|.-|.+.+.+..+-+.=.-.| ...++||+-+ + -....-...++....+.+ -|++||+.--+|
T Consensus 77 Rd~~~icVVe~p~Dv~a~E~~~~f~G---~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 77 RDKSQLCVVEEPKDVLALEKTGEFRG---LYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred cCCceEEEEcchHHHHHHHHhcccCe---eEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 35678888899888887766544344 4566777333 1 222334566777888888 899999875554
No 320
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=23.52 E-value=1.5e+02 Score=30.04 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=46.1
Q ss_pred CccEEEE---cCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCcc
Q psy4150 120 TTKVIIF---ANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVG 185 (395)
Q Consensus 120 ~~r~iVF---~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~ 185 (395)
+..+||. +.|-.+....++.|++.|+ .+.+...|| -++ ....++.+.|.+|.++-+|+||..
T Consensus 264 gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~---vf~-~a~~~l~~~~~~g~i~~iv~TdTi 329 (382)
T PRK06827 264 GKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFG---FFT-NGLEKFDKAYEEGYFDRIIGTNLV 329 (382)
T ss_pred CCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEee---cCh-HHHHHHHhhcccCCCCEEEEeCCC
Confidence 3345554 5577888888999998885 355667787 667 666667777888889999999975
No 321
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=23.50 E-value=72 Score=28.73 Aligned_cols=87 Identities=10% Similarity=0.256 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEE--eccCCCCCHHHHHHHHHHHhcC-
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMF--VGQSSGVTQQEQKEIMKKFRAG- 174 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~l--hg~~~~~~~~~R~~~l~~Fk~g- 174 (395)
.+...|.+.+.+.+. +...+|.+--+-..-.+++.++...-.....++ .+++++++.....+++.+....
T Consensus 19 ~ri~ela~~I~~~y~-------g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di 91 (178)
T COG0634 19 ARIKELAAQITEDYG-------GKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDI 91 (178)
T ss_pred HHHHHHHHHHHHhhC-------CCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCC
Confidence 355666666666554 367788888788888888888776532333333 3566688888777777776553
Q ss_pred -CccEEEEcCccccCCCC
Q psy4150 175 -EFNTLIATSVGEEGLDI 191 (395)
Q Consensus 175 -~~~vLVaT~v~~~GlDi 191 (395)
.-+||+--|++..|..+
T Consensus 92 ~grdVLiVeDIiDsG~TL 109 (178)
T COG0634 92 KGRDVLIVEDIIDSGLTL 109 (178)
T ss_pred CCCeEEEEecccccChhH
Confidence 45688888888888776
No 322
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=23.42 E-value=77 Score=25.73 Aligned_cols=37 Identities=14% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCccEEEEcCc-HHHHHHHHHHHcccCCCCc-eeEEeccCCCCC
Q psy4150 119 ETTKVIIFANY-RVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVT 160 (395)
Q Consensus 119 ~~~r~iVF~~t-~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~ 160 (395)
.+..+||||.+ ...+...+..|...| ++ +..+.| ++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G--~~~v~~l~G---G~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFG--HENVRVLDG---GLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcC--CCCEEEecC---CHH
Confidence 46789999999 577888888898888 55 666667 663
No 323
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.39 E-value=6e+02 Score=25.45 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=41.0
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHH--H---HHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRV--V---VAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~--~---ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
...-+..|.+++..+.. ...+|++|.+.... . .+.+...|.+.+ +.+..+.+...+-+...-.++.+.
T Consensus 7 G~g~~~~l~~~l~~~~~-----~g~kr~livtd~~~~~~~g~~~~v~~~L~~~g--i~~~~f~~v~~~p~~~~v~~~~~~ 79 (383)
T cd08186 7 GVGAIEKIGEILKDLKS-----KGISKVLLVTGKSAYKKSGAWDKVEPALDEHG--IEYVLYNKVTPNPTVDQVDEAAKL 79 (383)
T ss_pred CcCHHHHHHHHHHHhcc-----cCCCEEEEEcCccHHhhcChHHHHHHHHHHcC--CeEEEeCCCCCCCCHHHHHHHHHH
Confidence 33445555555544311 01246666664321 1 356666666666 555555442223344555566666
Q ss_pred HhcCCccEEEEc
Q psy4150 171 FRAGEFNTLIAT 182 (395)
Q Consensus 171 Fk~g~~~vLVaT 182 (395)
++...++++|+-
T Consensus 80 ~~~~~~D~IIai 91 (383)
T cd08186 80 GREFGAQAVIAI 91 (383)
T ss_pred HHHcCCCEEEEe
Confidence 666666666654
No 324
>PHA02558 uvsW UvsW helicase; Provisional
Probab=23.33 E-value=3.3e+02 Score=28.44 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=51.8
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
..+..|.-....+...... ....++||.|+|+..++.+.+.|.+.+. ...+..+.| +...
T Consensus 137 pTGsGKT~i~~~l~~~~~~-----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~---g~~~---------- 198 (501)
T PHA02558 137 PTSAGKSLIQYLLSRYYLE-----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYS---GTAK---------- 198 (501)
T ss_pred CCCCCHHHHHHHHHHHHHh-----cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEec---Cccc----------
Confidence 4455677654444332222 1234999999999999999998887541 122223333 2221
Q ss_pred hcCCccEEEEc--CccccCC-CCCCCCEEEEcCC
Q psy4150 172 RAGEFNTLIAT--SVGEEGL-DIGEIDLVICFDA 202 (395)
Q Consensus 172 k~g~~~vLVaT--~v~~~Gl-Dip~v~~VI~~d~ 202 (395)
.....|+|+| .+...+- .+..+++||.=.+
T Consensus 199 -~~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEa 231 (501)
T PHA02558 199 -DTDAPIVVSTWQSAVKQPKEWFDQFGMVIVDEC 231 (501)
T ss_pred -CCCCCEEEeeHHHHhhchhhhccccCEEEEEch
Confidence 1346899999 3333331 3567788775443
No 325
>KOG0701|consensus
Probab=23.32 E-value=29 Score=41.28 Aligned_cols=60 Identities=20% Similarity=0.132 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccc
Q psy4150 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217 (395)
Q Consensus 158 ~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRag 217 (395)
++....|.....+|..+.+..+++|..+..|+|+-.++.|+.++.-.+..+++|..||+.
T Consensus 704 ~~~~~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~ 763 (1606)
T KOG0701|consen 704 DAVGMYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVD 763 (1606)
T ss_pred hhhhhhhcccccceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccc
Confidence 445557888888888899999999999999999999999999999999999999999983
No 326
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=23.26 E-value=1.4e+02 Score=27.26 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=29.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
+.+++|++ .....+.+.+.|.+.| ..+..+.-+...............+..+.+++++-|+
T Consensus 125 ~~~ili~~-~~~~~~~l~~~L~~~G--~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS 185 (249)
T PRK05928 125 GKRVLYLR-GNGGREVLGDTLEERG--AEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTS 185 (249)
T ss_pred CCEEEEEC-CCCCHHHHHHHHHHCC--CEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECC
Confidence 34555554 4455777888888877 4443332211111111112333444456666666554
No 327
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=23.22 E-value=2.3e+02 Score=28.18 Aligned_cols=59 Identities=19% Similarity=0.336 Sum_probs=35.5
Q ss_pred cEEEEcCcHH----HHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEc
Q psy4150 122 KVIIFANYRV----VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182 (395)
Q Consensus 122 r~iVF~~t~~----~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT 182 (395)
|++|.|...- ..+.+...|.+.+ +.+..+.+....-+...=.++.+.++...++++|+.
T Consensus 23 r~lvVt~~~~~~~~~~~~v~~~L~~~~--i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIai 85 (366)
T PF00465_consen 23 RVLVVTDPSLSKSGLVDRVLDALEEAG--IEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAI 85 (366)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHHTT--CEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEE
T ss_pred CEEEEECchHHhCccHHHHHHHHhhCc--eEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 6666665411 2456666666666 666666644435566666677777777777777765
No 328
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=22.74 E-value=79 Score=28.80 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
--+.|.+.|... ..+.++|+++.... -..|.+.|.+.| +.+..+.-|.. ..........+.|..+.+++
T Consensus 103 ~s~~L~~~l~~~-------~~~~~vl~~~g~~~-~~~l~~~L~~~g--~~v~~~~vY~~-~~~~~~~~~~~~l~~~~~~~ 171 (231)
T PF02602_consen 103 SSEGLAELLKEQ-------LRGKRVLILRGEGG-RPDLPEKLREAG--IEVTEVIVYET-PPEELSPELKEALDRGEIDA 171 (231)
T ss_dssp SHHHHHGGHHHC-------CTTEEEEEEESSSS-CHHHHHHHHHTT--EEEEEEECEEE-EEHHHHHHHHHHHHHTTTSE
T ss_pred CHHHHHHHHHhh-------CCCCeEEEEcCCCc-cHHHHHHHHHCC--CeEEEEEEeec-ccccchHHHHHHHHcCCCCE
Confidence 445555555442 23466666665433 566888888888 66666655443 45667788888888888877
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccc
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRag 217 (395)
++-|+ |.+...+...++..+
T Consensus 172 v~ftS-------------------~~~~~~~~~~~~~~~ 191 (231)
T PF02602_consen 172 VVFTS-------------------PSAVRAFLELLKKNG 191 (231)
T ss_dssp EEESS-------------------HHHHHHHHHHSSGHH
T ss_pred EEECC-------------------HHHHHHHHHHhHhhh
Confidence 77664 445666777776654
No 329
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=22.74 E-value=2.2e+02 Score=27.51 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcccCCCCceeEEeccCC---CCCHHHHHHHHHHHhc---CCccEEEEc
Q psy4150 131 VVVAEIFDVLKPLEPMVKASMFVGQSS---GVTQQEQKEIMKKFRA---GEFNTLIAT 182 (395)
Q Consensus 131 ~~ae~l~~~L~~~~~~~~~~~lhg~~~---~~~~~~R~~~l~~Fk~---g~~~vLVaT 182 (395)
+....+.+++...| +...++.|..| .|+.+||.++++.... |+..|++++
T Consensus 21 ~~l~~lv~~~~~~G--v~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv 76 (294)
T TIGR02313 21 EALRELIEFQIEGG--SHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGT 76 (294)
T ss_pred HHHHHHHHHHHHcC--CCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 34455666666666 66666666544 6889999998887643 555565544
No 330
>PHA02653 RNA helicase NPH-II; Provisional
Probab=22.70 E-value=3.1e+02 Score=30.13 Aligned_cols=75 Identities=9% Similarity=-0.032 Sum_probs=46.7
Q ss_pred CccEEEEcCcHHHHHHHHHHHccc-C----CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPL-E----PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEI 194 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~-~----~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v 194 (395)
..+++|-++|+..|..+...+.+. | ...++...+| +++..... -+.....+||+|.-+. -.++..+
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~G---g~~~~~~~-----t~~k~~~Ilv~T~~L~-l~~L~~v 292 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYG---SIPDELIN-----TNPKPYGLVFSTHKLT-LNKLFDY 292 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEEC---CcchHHhh-----cccCCCCEEEEeCccc-ccccccC
Confidence 468999999999988877777542 1 1255677888 77632111 1112458999984220 0156678
Q ss_pred CEEEEcCCC
Q psy4150 195 DLVICFDAQ 203 (395)
Q Consensus 195 ~~VI~~d~p 203 (395)
++||.=.+.
T Consensus 293 ~~VVIDEaH 301 (675)
T PHA02653 293 GTVIIDEVH 301 (675)
T ss_pred CEEEccccc
Confidence 888865443
No 331
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=22.55 E-value=3.5e+02 Score=30.15 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=38.6
Q ss_pred CccEEEEcCcHHHHHHHHHHH----cccCCCCceeEEecc--CCCCCHHHHHHHHHHHhcCCccEEEEcCc
Q psy4150 120 TTKVIIFANYRVVVAEIFDVL----KPLEPMVKASMFVGQ--SSGVTQQEQKEIMKKFRAGEFNTLIATSV 184 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L----~~~~~~~~~~~lhg~--~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v 184 (395)
+..++|.|+++..|...++.+ ...| +.+..+++. ...+.+.+|..+ ..++|++||+-
T Consensus 111 g~~V~VVTpn~yLA~Rdae~m~~l~~~LG--Lsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp~ 173 (762)
T TIGR03714 111 GKGAMLVTTNDYLAKRDAEEMGPVYEWLG--LTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTNS 173 (762)
T ss_pred CCceEEeCCCHHHHHHHHHHHHHHHhhcC--CcEEEEECCCCccccCHHHHHHh------CCCCEEEECch
Confidence 467999999999888777776 4456 777776651 112555555433 24889999963
No 332
>PRK05320 rhodanese superfamily protein; Provisional
Probab=22.12 E-value=1.6e+02 Score=28.09 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCCCH
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVTQ 161 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~~ 161 (395)
.+.++++||.+-..++..+.+|.+.| +. +..+.| ++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~G--f~~V~~L~G---Gi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVG--IDNVYQLEG---GILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcC--CcceEEecc---CHHH
Confidence 45789999999999999999999998 74 677888 7744
No 333
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.07 E-value=96 Score=23.24 Aligned_cols=51 Identities=24% Similarity=0.419 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccc-cCceEEEEEeCC
Q psy4150 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQG 231 (395)
Q Consensus 158 ~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~-~~g~~i~l~~~~ 231 (395)
.+.+..-..+++.| ++.+|.|.+++ ..++-|++.++-|. ..|.++++.++-
T Consensus 7 ~le~eTLdNliesf------------VlREGTDyG~~-----------E~sL~qkv~~~r~qlq~GeaVivwsel 58 (72)
T COG3089 7 ELEPETLDNLIESF------------VLREGTDYGEH-----------ERSLEQKVADVRRQLQSGEAVIVWSEL 58 (72)
T ss_pred hhCHHHHHHHHHHH------------HHhcCCcCccc-----------cccHHHHHHHHHHHHhcCceEEEecch
Confidence 45566666777777 67889998765 44677888887666 678888877653
No 334
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.59 E-value=6.9e+02 Score=24.55 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 158 GVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 158 ~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
+-+...-.+..+.++...++++|+
T Consensus 60 ~p~~~~v~~~~~~~~~~~~D~IIa 83 (351)
T cd08170 60 ECTRAEIERLAEIARDNGADVVIG 83 (351)
T ss_pred cCCHHHHHHHHHHHhhcCCCEEEE
Confidence 334444444444444444444444
No 335
>PRK10628 LigB family dioxygenase; Provisional
Probab=21.38 E-value=1.4e+02 Score=28.48 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=29.0
Q ss_pred EcCccccCCC----------CCCCCE-EEEcCCCCChhh-Hhhhccccccc-cCceEE
Q psy4150 181 ATSVGEEGLD----------IGEIDL-VICFDAQKSPIK-MVQRLGRTGRK-RNGRCV 225 (395)
Q Consensus 181 aT~v~~~GlD----------ip~v~~-VI~~d~p~s~~~-yiQr~GRagR~-~~g~~i 225 (395)
+.+.-.||+| +|+.++ ||...++.+... .--++||+-|. +..++.
T Consensus 86 ~~~~~~rGlDHG~WvpL~~m~P~adIPVvqlSl~~~~~~~~h~~lG~aL~~LR~~gvL 143 (246)
T PRK10628 86 TLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSTKPAAWHFEMGRKLAALRDEGIM 143 (246)
T ss_pred ccCCcccCcccchhhhhhhhCCCCCCCeEEeecCCCCCHHHHHHHHHHHHhhccCCEE
Confidence 3444458888 566666 777777665433 44489999887 544443
No 336
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=21.34 E-value=1.2e+02 Score=24.53 Aligned_cols=33 Identities=12% Similarity=0.172 Sum_probs=26.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
+.+++++|.+-..+...+..|...| +......|
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G--~~~v~~~G 92 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMG--YTHAENAG 92 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcC--CCeEEecC
Confidence 4679999999888888899998888 66555455
No 337
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.28 E-value=5.6e+02 Score=25.37 Aligned_cols=18 Identities=11% Similarity=0.001 Sum_probs=8.2
Q ss_pred HHHHHHHHhcCCccEEEE
Q psy4150 164 QKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 164 R~~~l~~Fk~g~~~vLVa 181 (395)
=.++.+.++...++++|+
T Consensus 72 v~~~~~~~~~~~~D~IIa 89 (357)
T cd08181 72 IMEAVEIAKKFNADFVIG 89 (357)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 334444444444454444
No 338
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.17 E-value=2.3e+02 Score=27.34 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=32.5
Q ss_pred HHHHHHHHHcccCCCCceeEEeccCC---CCCHHHHHHHHHHHhc---CCccEEEEc
Q psy4150 132 VVAEIFDVLKPLEPMVKASMFVGQSS---GVTQQEQKEIMKKFRA---GEFNTLIAT 182 (395)
Q Consensus 132 ~ae~l~~~L~~~~~~~~~~~lhg~~~---~~~~~~R~~~l~~Fk~---g~~~vLVaT 182 (395)
....+.++|.+.| +...++.|..| .|+.+||.++++.... |+..|++++
T Consensus 27 ~l~~li~~l~~~G--v~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv 81 (296)
T TIGR03249 27 AYRENIEWLLGYG--LEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV 81 (296)
T ss_pred HHHHHHHHHHhcC--CCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 3455666666666 67677767554 6899999999887654 455555544
No 339
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=21.11 E-value=6.9e+02 Score=24.79 Aligned_cols=59 Identities=5% Similarity=0.075 Sum_probs=26.9
Q ss_pred cEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC---CccEEEEc
Q psy4150 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG---EFNTLIAT 182 (395)
Q Consensus 122 r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g---~~~vLVaT 182 (395)
+++|++...-....+.+.|...+ +.+..+.+-..+-+...-.+..+.++.. .++++|+-
T Consensus 27 ~~lvvtd~~~~~~~v~~~L~~~g--~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIai 88 (347)
T cd08184 27 PAVFFVDDVFQGKDLISRLPVES--EDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGI 88 (347)
T ss_pred eEEEEECcchhhhHHHHHHHhcC--CcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEe
Confidence 44444432222244555555544 4444443322234444444555555554 56666643
No 340
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=20.90 E-value=2.6e+02 Score=26.50 Aligned_cols=49 Identities=16% Similarity=0.355 Sum_probs=32.1
Q ss_pred HHHHHHHHHcccCCCCceeEEeccCC---CCCHHHHHHHHHHHhc---CCccEEEEc
Q psy4150 132 VVAEIFDVLKPLEPMVKASMFVGQSS---GVTQQEQKEIMKKFRA---GEFNTLIAT 182 (395)
Q Consensus 132 ~ae~l~~~L~~~~~~~~~~~lhg~~~---~~~~~~R~~~l~~Fk~---g~~~vLVaT 182 (395)
....+.++|.+.| +...++.|..| .++.+||.++++.... |...|++++
T Consensus 19 ~~~~~i~~l~~~G--v~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv 73 (281)
T cd00408 19 ALRRLVEFLIEAG--VDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV 73 (281)
T ss_pred HHHHHHHHHHHcC--CCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec
Confidence 3445555665666 66666666544 6889999999887754 455555554
No 341
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=20.87 E-value=5.9e+02 Score=25.28 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=42.0
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCc--HH--HHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANY--RV--VVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t--~~--~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
.+...-+..|.+++..+ ...+++|.+.. .+ ..+.+.+.|.+.| +.+..+.+-...-+...=.+..+
T Consensus 6 ~~G~g~~~~l~~~l~~~--------g~~~~liv~~~~~~~~~~~~~v~~~L~~~g--~~~~~~~~v~~~p~~~~v~~~~~ 75 (370)
T cd08192 6 RFGAGAIKELPAECAEL--------GIKRPLIVTDPGLAALGLVARVLALLEDAG--LAAALFDEVPPNPTEAAVEAGLA 75 (370)
T ss_pred EECcCHHHHHHHHHHHc--------CCCeEEEEcCcchhhCccHHHHHHHHHHcC--CeEEEeCCCCCCCCHHHHHHHHH
Confidence 34444555555555442 12456665542 12 3566667776666 55544443222344445556666
Q ss_pred HHhcCCccEEEEc
Q psy4150 170 KFRAGEFNTLIAT 182 (395)
Q Consensus 170 ~Fk~g~~~vLVaT 182 (395)
.++...++++|+-
T Consensus 76 ~~~~~~~d~IIai 88 (370)
T cd08192 76 AYRAGGCDGVIAF 88 (370)
T ss_pred HHHhcCCCEEEEe
Confidence 6777777777754
No 342
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.86 E-value=2.6e+02 Score=26.76 Aligned_cols=49 Identities=16% Similarity=0.309 Sum_probs=33.5
Q ss_pred HHHHHHHHHcccCCCCceeEEeccCC---CCCHHHHHHHHHHHhc---CCccEEEEc
Q psy4150 132 VVAEIFDVLKPLEPMVKASMFVGQSS---GVTQQEQKEIMKKFRA---GEFNTLIAT 182 (395)
Q Consensus 132 ~ae~l~~~L~~~~~~~~~~~lhg~~~---~~~~~~R~~~l~~Fk~---g~~~vLVaT 182 (395)
....+.++|.+.| +...++.|..| .|+.+||.++++.+.. |+..|++++
T Consensus 20 ~~~~~i~~l~~~G--v~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv 74 (285)
T TIGR00674 20 ALEKLIDFQIENG--TDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT 74 (285)
T ss_pred HHHHHHHHHHHcC--CCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence 3455556665666 77677766544 6899999999887654 566666665
No 343
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.78 E-value=3e+02 Score=23.50 Aligned_cols=81 Identities=20% Similarity=0.339 Sum_probs=45.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
..+++|-++..+....+.+.|+..+ ..-.-+..-...+....|.-.+. -+-.|+|+...++||-
T Consensus 36 A~r~vV~t~N~~K~~aindvlrrf~--l~Eaeml~~~T~~ADlTrmPA~t--------------Kalmaldis~ADlvIA 99 (156)
T COG4019 36 AKRIVVATNNQKKFKAINDVLRRFC--LAEAEMLDIDTRFADLTRMPALT--------------KALMALDISKADLVIA 99 (156)
T ss_pred cceEEEecCCHHHHHHHHHHHHHhc--cchHHHhcCccchhhcccChHHH--------------HHHHhccccCCcEEEe
Confidence 4788888888888888888887655 11110000000111111111111 1236899999999884
Q ss_pred cCCCCChhhHhhhccccccccCceEEEEEe
Q psy4150 200 FDAQKSPIKMVQRLGRTGRKRNGRCVILLT 229 (395)
Q Consensus 200 ~d~p~s~~~yiQr~GRagR~~~g~~i~l~~ 229 (395)
.||.|-.|+|...++..
T Consensus 100 -------------RGRLGvPGSGsmlVimD 116 (156)
T COG4019 100 -------------RGRLGVPGSGSMLVIMD 116 (156)
T ss_pred -------------eccccCCCCCcEEEEEc
Confidence 47777777777665543
No 344
>PRK10858 nitrogen regulatory protein P-II 1; Provisional
Probab=20.73 E-value=1.9e+02 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=23.0
Q ss_pred EEEEcCCCCChhhHhhhccccccccCceEEEEE
Q psy4150 196 LVICFDAQKSPIKMVQRLGRTGRKRNGRCVILL 228 (395)
Q Consensus 196 ~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~ 228 (395)
+|+.=+.-.....-+...+|||..|+|+++++-
T Consensus 63 ivv~D~~v~~vv~~I~~~a~TG~~GDGkIfV~p 95 (112)
T PRK10858 63 IVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFD 95 (112)
T ss_pred EEEChHhHHHHHHHHHHHhccCCCCCcEEEEEE
Confidence 334333333566778888999999999988763
No 345
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=20.49 E-value=3.3e+02 Score=23.34 Aligned_cols=50 Identities=14% Similarity=0.042 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
-...+.++|+.+-. .-.+.++.|+-.+....+-|+.+|.+.| ..+...|.
T Consensus 11 t~~a~~~ll~~~~~----~~~gk~v~VvGrs~~vG~pla~lL~~~g--atV~~~~~ 60 (140)
T cd05212 11 VAKAVKELLNKEGV----RLDGKKVLVVGRSGIVGAPLQCLLQRDG--ATVYSCDW 60 (140)
T ss_pred HHHHHHHHHHHcCC----CCCCCEEEEECCCchHHHHHHHHHHHCC--CEEEEeCC
Confidence 45556666665421 2457899999999999999999999988 88888886
No 346
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=20.34 E-value=6e+02 Score=25.46 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=40.7
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcH----HHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYR----VVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~----~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
+...-+..|.+++..+ +.+++|.+... ...+.+.+.|.+.+ +.+..+-|....-+..+-.+..+.
T Consensus 6 fG~g~l~~l~~~~~~~---------g~~~livt~~~~~~~~~~~~v~~~L~~~~--~~~~~f~~v~~~~~~~~v~~~~~~ 74 (386)
T cd08191 6 FGAGQRRQLPRLAARL---------GSRALIVTDERMAGTPVFAELVQALAAAG--VEVEVFDGVLPDLPRSELCDAASA 74 (386)
T ss_pred ECcCHHHHHHHHHHHc---------CCeEEEEECcchhhcchHHHHHHHHHHcC--CeEEEECCCCCCcCHHHHHHHHHH
Confidence 3444555555554432 25676666432 23455666676666 555555442111234444455666
Q ss_pred HhcCCccEEEEc
Q psy4150 171 FRAGEFNTLIAT 182 (395)
Q Consensus 171 Fk~g~~~vLVaT 182 (395)
++...++++|+-
T Consensus 75 ~~~~~~D~IIai 86 (386)
T cd08191 75 AARAGPDVIIGL 86 (386)
T ss_pred HHhcCCCEEEEe
Confidence 677777777764
No 347
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=20.19 E-value=3.4e+02 Score=19.50 Aligned_cols=43 Identities=12% Similarity=0.041 Sum_probs=28.5
Q ss_pred EEEEc-CcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 123 VIIFA-NYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 123 ~iVF~-~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
+.||+ +++..|.....+|.+.+ +....+.- ..+...+.++.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~--i~~~~i~i---~~~~~~~~~~~~~ 45 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKG--VDYEEIDV---DGDPALREEMINR 45 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCC--CcEEEEEC---CCCHHHHHHHHHH
Confidence 45555 56788888899999888 76666655 4455555554443
No 348
>PRK01415 hypothetical protein; Validated
Probab=20.13 E-value=1.7e+02 Score=27.84 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCCC
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVT 160 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~ 160 (395)
..+.++++||.+--.|+..+.+|.+.| +. +..+.| ++.
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~G--f~~Vy~L~G---Gi~ 207 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIG--YDEVYHLKG---GIL 207 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcC--CCcEEEech---HHH
Confidence 356789999999999999999999999 65 677888 653
No 349
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.12 E-value=2.6e+02 Score=27.25 Aligned_cols=48 Identities=15% Similarity=0.260 Sum_probs=31.7
Q ss_pred HHHHHHHHcccCCCCceeEEeccCC---CCCHHHHHHHHHHHhc---CCccEEEEc
Q psy4150 133 VAEIFDVLKPLEPMVKASMFVGQSS---GVTQQEQKEIMKKFRA---GEFNTLIAT 182 (395)
Q Consensus 133 ae~l~~~L~~~~~~~~~~~lhg~~~---~~~~~~R~~~l~~Fk~---g~~~vLVaT 182 (395)
...+.++|...| +...++.|..| .|+.+||.++++...+ |++.|++++
T Consensus 31 l~~lv~~li~~G--v~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv 84 (309)
T cd00952 31 TARLVERLIAAG--VDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA 84 (309)
T ss_pred HHHHHHHHHHcC--CCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 455556665666 66666766554 6889999998887654 455555554
No 350
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=20.06 E-value=4.9e+02 Score=28.00 Aligned_cols=76 Identities=16% Similarity=0.263 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCc----HHHHHHHHHHHcccCCCC-ceeEEeccC----CCCCHHHHHHHHH
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANY----RVVVAEIFDVLKPLEPMV-KASMFVGQS----SGVTQQEQKEIMK 169 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t----~~~ae~l~~~L~~~~~~~-~~~~lhg~~----~~~~~~~R~~~l~ 169 (395)
.++...+.|.+...+ +.+++||..+ ...+--|+..|...| . .+.++..+. =+++.. .++
T Consensus 54 ~m~~a~~ri~~ai~~------~e~I~I~gDyD~DGitstail~~~L~~~g--~~~~~~~IP~R~~eGYGl~~~----~i~ 121 (575)
T PRK11070 54 GIEKAVELLYNALRE------GTRIIVVGDFDADGATSTALSVLALRSLG--CSNVDYLVPNRFEDGYGLSPE----VVD 121 (575)
T ss_pred CHHHHHHHHHHHHHC------CCEEEEEEecCccHHHHHHHHHHHHHHcC--CCceEEEeCCCCcCCCCCCHH----HHH
Confidence 344555555555443 5899999775 556667888888887 4 343333311 056653 555
Q ss_pred HHhcCCccEEEEcCccc
Q psy4150 170 KFRAGEFNTLIATSVGE 186 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~ 186 (395)
++.....+++|++|.+.
T Consensus 122 ~~~~~~~~LiItvD~Gi 138 (575)
T PRK11070 122 QAHARGAQLIVTVDNGI 138 (575)
T ss_pred HHHhcCCCEEEEEcCCc
Confidence 66555678888888654
Done!