Query psy4150
Match_columns 395
No_of_seqs 413 out of 2965
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 18:11:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c4o_A DNA nucleotide excision 100.0 8.9E-29 3E-33 263.5 17.7 221 97-366 422-647 (664)
2 2d7d_A Uvrabc system protein B 100.0 1.6E-28 5.6E-33 261.3 17.8 228 97-364 428-660 (661)
3 2db3_A ATP-dependent RNA helic 99.9 1.3E-27 4.4E-32 242.3 14.3 193 25-234 210-410 (434)
4 1t5i_A C_terminal domain of A 99.9 2.7E-26 9.3E-31 204.2 16.6 125 95-232 14-139 (172)
5 2hjv_A ATP-dependent RNA helic 99.9 1.1E-25 3.8E-30 198.3 17.7 124 95-231 18-142 (163)
6 1fuk_A Eukaryotic initiation f 99.9 2.1E-25 7.1E-30 196.7 17.8 124 96-232 13-138 (165)
7 2p6n_A ATP-dependent RNA helic 99.9 8.5E-26 2.9E-30 204.7 15.1 126 95-234 38-164 (191)
8 2rb4_A ATP-dependent RNA helic 99.9 2.8E-25 9.7E-30 197.7 17.0 131 89-232 8-148 (175)
9 3eaq_A Heat resistant RNA depe 99.9 2.3E-25 8E-30 204.8 16.7 125 94-231 13-138 (212)
10 2jgn_A DBX, DDX3, ATP-dependen 99.9 3.5E-25 1.2E-29 199.5 15.1 125 95-231 28-153 (185)
11 3i32_A Heat resistant RNA depe 99.9 2E-24 6.9E-29 208.9 17.1 126 94-232 10-136 (300)
12 2j0s_A ATP-dependent RNA helic 99.9 2.4E-24 8.2E-29 214.9 15.9 190 26-231 187-383 (410)
13 2i4i_A ATP-dependent RNA helic 99.9 1.2E-24 4.1E-29 217.0 12.0 192 26-232 183-384 (417)
14 3i5x_A ATP-dependent RNA helic 99.9 2E-24 7E-29 224.9 13.7 200 26-231 234-449 (563)
15 3sqw_A ATP-dependent RNA helic 99.9 2.1E-24 7.2E-29 226.2 13.7 200 26-231 183-398 (579)
16 1xti_A Probable ATP-dependent 99.9 5.7E-24 1.9E-28 210.1 14.1 193 26-233 160-359 (391)
17 2yjt_D ATP-dependent RNA helic 99.8 6.6E-26 2.2E-30 201.0 0.0 122 97-231 15-137 (170)
18 3pey_A ATP-dependent RNA helic 99.9 4.8E-24 1.6E-28 210.2 12.8 192 26-233 153-358 (395)
19 3eiq_A Eukaryotic initiation f 99.9 3E-24 1E-28 213.7 11.0 191 26-232 191-388 (414)
20 3fht_A ATP-dependent RNA helic 99.9 8.6E-24 2.9E-28 210.0 14.0 191 26-232 176-380 (412)
21 1s2m_A Putative ATP-dependent 99.9 2.8E-23 9.7E-28 206.2 14.2 190 26-232 171-366 (400)
22 4a2p_A RIG-I, retinoic acid in 99.9 3.5E-23 1.2E-27 213.8 13.2 136 96-236 370-513 (556)
23 1wp9_A ATP-dependent RNA helic 99.9 5.4E-23 1.9E-27 206.6 12.5 141 95-241 340-485 (494)
24 3fmp_B ATP-dependent RNA helic 99.9 5.6E-25 1.9E-29 224.8 -2.6 193 26-234 243-449 (479)
25 1hv8_A Putative ATP-dependent 99.9 4E-22 1.4E-26 194.5 16.8 186 25-231 154-345 (367)
26 1oyw_A RECQ helicase, ATP-depe 99.9 4E-22 1.4E-26 206.8 16.0 123 95-230 219-342 (523)
27 3tbk_A RIG-I helicase domain; 99.9 1.8E-22 6.3E-27 207.8 12.2 136 96-236 369-512 (555)
28 3oiy_A Reverse gyrase helicase 99.9 7E-22 2.4E-26 197.9 15.8 173 28-228 159-362 (414)
29 4gl2_A Interferon-induced heli 99.9 3.7E-22 1.3E-26 212.8 12.6 129 96-234 379-522 (699)
30 1z5z_A Helicase of the SNF2/RA 99.9 1.9E-21 6.4E-26 185.5 16.0 149 94-253 92-246 (271)
31 4a2q_A RIG-I, retinoic acid in 99.9 6.5E-22 2.2E-26 214.8 13.7 136 96-236 611-754 (797)
32 2z0m_A 337AA long hypothetical 99.9 9.6E-22 3.3E-26 189.8 12.9 182 25-229 136-321 (337)
33 2v1x_A ATP-dependent DNA helic 99.9 1.1E-21 3.6E-26 206.4 14.0 107 119-230 266-373 (591)
34 4a2w_A RIG-I, retinoic acid in 99.9 7.1E-22 2.4E-26 217.8 11.9 151 96-252 611-769 (936)
35 2ykg_A Probable ATP-dependent 99.8 1.4E-21 4.8E-26 208.2 11.2 133 96-233 378-518 (696)
36 1fuu_A Yeast initiation factor 99.8 2.6E-23 8.9E-28 205.4 -3.4 190 26-231 170-366 (394)
37 3fho_A ATP-dependent RNA helic 99.8 3.2E-22 1.1E-26 206.7 2.7 194 26-235 267-474 (508)
38 1tf5_A Preprotein translocase 99.8 3.3E-20 1.1E-24 198.3 13.4 129 92-233 410-547 (844)
39 2whx_A Serine protease/ntpase/ 99.8 1.5E-20 5.3E-25 198.4 7.4 166 26-229 285-476 (618)
40 3jux_A Protein translocase sub 99.8 2.9E-19 9.9E-24 187.8 15.5 130 92-234 452-590 (822)
41 2z83_A Helicase/nucleoside tri 99.8 3.2E-20 1.1E-24 189.5 6.5 102 120-231 190-313 (459)
42 4ddu_A Reverse gyrase; topoiso 99.8 7.1E-20 2.4E-24 204.3 8.9 149 28-204 216-388 (1104)
43 1yks_A Genome polyprotein [con 99.8 9E-20 3.1E-24 185.2 8.3 99 120-228 177-296 (440)
44 3dmq_A RNA polymerase-associat 99.8 5.7E-19 2E-23 195.2 13.9 129 93-234 484-618 (968)
45 2fsf_A Preprotein translocase 99.8 6.8E-19 2.3E-23 187.9 13.0 129 92-233 419-585 (853)
46 3l9o_A ATP-dependent RNA helic 99.8 5E-19 1.7E-23 197.6 11.3 111 119-234 440-600 (1108)
47 2fwr_A DNA repair protein RAD2 99.8 3.5E-19 1.2E-23 181.4 8.1 125 96-238 333-461 (472)
48 1z63_A Helicase of the SNF2/RA 99.8 9.9E-19 3.4E-23 179.3 11.1 132 95-237 322-459 (500)
49 1nkt_A Preprotein translocase 99.8 3E-18 1E-22 183.3 13.8 129 92-233 438-619 (922)
50 1gku_B Reverse gyrase, TOP-RG; 99.8 1.6E-19 5.4E-24 201.1 3.4 88 96-203 260-352 (1054)
51 2jlq_A Serine protease subunit 99.7 1.8E-18 6E-23 176.2 9.9 101 120-230 188-310 (451)
52 4a4z_A Antiviral helicase SKI2 99.7 3E-18 1E-22 189.7 12.4 122 97-230 321-491 (997)
53 2xau_A PRE-mRNA-splicing facto 99.7 1.6E-18 5.5E-23 187.3 7.1 125 99-230 286-442 (773)
54 2va8_A SSO2462, SKI2-type heli 99.7 1.4E-17 4.9E-22 178.4 14.3 110 120-232 252-409 (715)
55 2xgj_A ATP-dependent RNA helic 99.7 2E-17 7E-22 183.1 14.3 112 120-234 343-502 (1010)
56 1z3i_X Similar to RAD54-like; 99.7 6.4E-17 2.2E-21 171.7 17.4 136 96-241 397-538 (644)
57 2oca_A DAR protein, ATP-depend 99.7 1.2E-17 4.2E-22 171.6 10.7 120 98-228 331-452 (510)
58 2wv9_A Flavivirin protease NS2 99.7 1.3E-17 4.3E-22 177.5 10.9 100 120-229 410-531 (673)
59 3mwy_W Chromo domain-containin 99.7 4.6E-17 1.6E-21 176.8 14.2 135 96-241 554-694 (800)
60 2zj8_A DNA helicase, putative 99.7 2.9E-17 9.9E-22 176.2 12.0 110 120-232 237-388 (720)
61 2p6r_A Afuhel308 helicase; pro 99.7 3E-17 1E-21 175.7 12.0 110 120-232 242-389 (702)
62 2v6i_A RNA helicase; membrane, 99.7 1.5E-17 5.1E-22 168.4 8.8 100 120-229 171-288 (431)
63 3h1t_A Type I site-specific re 99.7 2.6E-17 8.8E-22 172.6 9.3 116 99-221 421-545 (590)
64 2eyq_A TRCF, transcription-rep 99.7 7.6E-17 2.6E-21 180.8 13.1 108 120-230 812-921 (1151)
65 3rc3_A ATP-dependent RNA helic 99.7 2E-16 6.8E-21 168.2 14.0 94 121-220 321-430 (677)
66 3o8b_A HCV NS3 protease/helica 99.7 4.5E-17 1.5E-21 172.0 7.3 102 119-234 395-517 (666)
67 1gm5_A RECG; helicase, replica 99.7 2.9E-17 1E-21 177.1 5.8 126 95-229 559-695 (780)
68 4f92_B U5 small nuclear ribonu 99.5 7.5E-15 2.6E-19 169.7 9.0 112 118-232 315-474 (1724)
69 4f92_B U5 small nuclear ribonu 99.5 1.3E-13 4.4E-18 159.5 12.2 111 118-231 1153-1308(1724)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.3 1.1E-11 3.9E-16 137.1 14.3 123 98-221 511-694 (1038)
71 2vl7_A XPD; helicase, unknown 98.4 4E-07 1.4E-11 94.4 9.2 88 101-204 370-463 (540)
72 3hgt_A HDA1 complex subunit 3; 98.4 1.9E-06 6.4E-11 83.3 13.0 130 95-240 106-246 (328)
73 2ipc_A Preprotein translocase 98.1 1.9E-05 6.6E-10 85.1 14.1 129 91-233 420-700 (997)
74 1e52_A Excinuclease ABC subuni 98.1 6E-07 2.1E-11 65.5 1.0 37 328-366 24-60 (63)
75 4a15_A XPD helicase, ATP-depen 97.6 0.00019 6.5E-09 75.5 9.4 91 100-204 433-527 (620)
76 3crv_A XPD/RAD3 related DNA he 96.6 0.016 5.5E-07 59.7 12.4 89 100-204 378-473 (551)
77 1gm5_A RECG; helicase, replica 96.0 0.027 9.3E-07 60.6 10.7 101 95-204 398-501 (780)
78 3oiy_A Reverse gyrase helicase 93.8 0.21 7.2E-06 48.7 9.4 98 95-202 45-148 (414)
79 2gxq_A Heat resistant RNA depe 93.2 0.39 1.3E-05 41.7 9.2 101 95-202 47-153 (207)
80 2eyq_A TRCF, transcription-rep 93.1 0.32 1.1E-05 54.6 10.4 96 95-199 633-731 (1151)
81 4ddu_A Reverse gyrase; topoiso 93.0 0.23 7.9E-06 55.5 8.9 99 94-202 101-205 (1104)
82 1t6n_A Probable ATP-dependent 90.9 1.4 4.8E-05 38.6 10.1 98 95-201 60-166 (220)
83 2pl3_A Probable ATP-dependent 90.1 1.1 3.7E-05 39.9 8.7 75 119-201 96-179 (236)
84 3fe2_A Probable ATP-dependent 90.1 1 3.5E-05 40.4 8.6 77 119-202 101-185 (242)
85 3ber_A Probable ATP-dependent 89.9 2 6.8E-05 38.9 10.4 98 95-202 89-195 (249)
86 3bor_A Human initiation factor 89.7 0.9 3.1E-05 40.7 7.9 77 119-201 97-181 (237)
87 2oxc_A Probable ATP-dependent 88.4 1.4 4.8E-05 39.2 8.1 94 95-200 70-173 (230)
88 1oyw_A RECQ helicase, ATP-depe 88.0 1 3.4E-05 45.9 7.6 59 120-183 65-123 (523)
89 1vec_A ATP-dependent RNA helic 87.8 1.7 5.9E-05 37.5 8.1 97 95-201 49-154 (206)
90 2v1x_A ATP-dependent DNA helic 86.6 1.1 3.8E-05 46.5 7.0 59 120-183 84-144 (591)
91 3ly5_A ATP-dependent RNA helic 86.4 4.1 0.00014 37.0 10.3 101 95-202 100-210 (262)
92 3iuy_A Probable ATP-dependent 86.2 1.2 4E-05 39.5 6.2 77 119-202 93-176 (228)
93 1xti_A Probable ATP-dependent 85.5 4.2 0.00014 38.6 10.2 99 95-202 54-161 (391)
94 1wp9_A ATP-dependent RNA helic 84.6 3.5 0.00012 39.8 9.3 96 95-203 32-135 (494)
95 1wrb_A DJVLGB; RNA helicase, D 83.4 2.3 7.7E-05 38.3 6.9 75 120-201 100-182 (253)
96 1qde_A EIF4A, translation init 83.2 2 6.7E-05 37.7 6.2 95 95-201 60-163 (224)
97 3dkp_A Probable ATP-dependent 82.1 1.2 4E-05 39.9 4.4 100 94-202 74-184 (245)
98 1gku_B Reverse gyrase, TOP-RG; 80.6 2.7 9.2E-05 46.7 7.3 96 95-201 80-183 (1054)
99 4a2p_A RIG-I, retinoic acid in 79.5 4.9 0.00017 40.1 8.4 100 95-202 31-139 (556)
100 1s2m_A Putative ATP-dependent 78.7 9 0.00031 36.4 9.7 99 95-203 67-173 (400)
101 2db3_A ATP-dependent RNA helic 78.7 4.4 0.00015 39.8 7.6 100 95-201 102-211 (434)
102 3fmo_B ATP-dependent RNA helic 78.1 4.1 0.00014 38.0 6.8 94 95-202 140-244 (300)
103 2j0s_A ATP-dependent RNA helic 77.2 7.5 0.00026 37.2 8.7 97 95-201 83-187 (410)
104 1q0u_A Bstdead; DEAD protein, 77.2 2.4 8.1E-05 37.2 4.6 97 95-201 50-158 (219)
105 1hv8_A Putative ATP-dependent 77.2 12 0.0004 34.9 9.8 96 95-202 53-156 (367)
106 2i4i_A ATP-dependent RNA helic 76.2 5.6 0.00019 38.1 7.4 75 121-202 102-184 (417)
107 1fuu_A Yeast initiation factor 75.4 7.4 0.00025 36.8 8.0 76 119-202 88-171 (394)
108 3tbk_A RIG-I helicase domain; 74.4 4.8 0.00017 40.1 6.6 100 95-202 28-136 (555)
109 4gl2_A Interferon-induced heli 73.2 1.4 4.8E-05 46.0 2.3 101 95-202 31-145 (699)
110 4a2q_A RIG-I, retinoic acid in 72.3 8.9 0.0003 40.9 8.4 100 95-202 272-380 (797)
111 2z0m_A 337AA long hypothetical 71.9 6.8 0.00023 36.1 6.6 74 120-201 56-137 (337)
112 3b6e_A Interferon-induced heli 71.7 4.4 0.00015 34.9 4.9 81 96-183 58-140 (216)
113 3eiq_A Eukaryotic initiation f 68.0 19 0.00063 34.2 9.0 99 95-202 86-192 (414)
114 3l9o_A ATP-dependent RNA helic 61.4 8.5 0.00029 42.9 5.6 85 95-201 208-298 (1108)
115 2ykg_A Probable ATP-dependent 59.7 17 0.00057 37.6 7.3 101 95-203 37-146 (696)
116 2oca_A DAR protein, ATP-depend 58.5 15 0.00051 36.4 6.5 94 95-203 137-235 (510)
117 2l82_A Designed protein OR32; 56.8 36 0.0012 27.0 6.9 51 123-178 5-55 (162)
118 2p6r_A Afuhel308 helicase; pro 56.4 13 0.00045 38.8 5.8 92 95-202 49-147 (702)
119 3g5j_A Putative ATP/GTP bindin 55.7 9.9 0.00034 30.1 3.8 35 121-160 90-125 (134)
120 3i5x_A ATP-dependent RNA helic 55.2 15 0.00053 36.9 6.0 99 95-199 120-232 (563)
121 3sqw_A ATP-dependent RNA helic 55.1 14 0.00048 37.6 5.6 99 95-199 69-181 (579)
122 4a2w_A RIG-I, retinoic acid in 52.6 14 0.00047 40.4 5.3 100 95-202 272-380 (936)
123 3gk5_A Uncharacterized rhodane 50.7 9.7 0.00033 29.5 2.8 35 118-154 53-87 (108)
124 3foj_A Uncharacterized protein 49.3 10 0.00035 28.8 2.7 34 119-154 55-88 (100)
125 3iwh_A Rhodanese-like domain p 48.8 8.7 0.0003 29.8 2.3 34 119-154 55-88 (103)
126 3eme_A Rhodanese-like domain p 47.0 9.7 0.00033 29.1 2.3 34 119-154 55-88 (103)
127 2jtq_A Phage shock protein E; 45.1 20 0.0007 26.1 3.8 33 119-154 40-73 (85)
128 2zj8_A DNA helicase, putative 44.9 15 0.00052 38.5 4.1 92 95-202 48-147 (720)
129 2fsf_A Preprotein translocase 44.8 25 0.00085 37.9 5.6 71 120-199 115-200 (853)
130 2fz4_A DNA repair protein RAD2 44.7 26 0.00089 31.2 5.1 61 95-182 117-178 (237)
131 1tf5_A Preprotein translocase 44.7 29 0.00099 37.4 6.1 69 120-199 124-209 (844)
132 2va8_A SSO2462, SKI2-type heli 44.2 20 0.00069 37.4 4.9 94 94-202 54-154 (715)
133 1c4o_A DNA nucleotide excision 43.7 87 0.003 32.5 9.7 86 95-189 37-144 (664)
134 1wv9_A Rhodanese homolog TT165 42.7 14 0.00049 27.6 2.6 32 121-154 54-85 (94)
135 2l82_A Designed protein OR32; 42.7 1E+02 0.0035 24.4 7.5 54 121-179 80-133 (162)
136 2fwr_A DNA repair protein RAD2 42.0 45 0.0015 32.5 6.8 80 95-201 117-200 (472)
137 3fht_A ATP-dependent RNA helic 41.9 31 0.001 32.6 5.4 95 95-202 73-177 (412)
138 3pey_A ATP-dependent RNA helic 41.5 98 0.0033 28.6 9.0 95 95-203 53-155 (395)
139 3he5_B Synzip2; heterodimeric 41.0 27 0.00092 22.7 3.2 36 330-365 12-47 (52)
140 3ipz_A Monothiol glutaredoxin- 40.9 1.2E+02 0.0041 23.2 8.1 31 121-153 18-54 (109)
141 2k0z_A Uncharacterized protein 40.7 24 0.00082 27.2 3.7 35 118-154 54-88 (110)
142 3h11_B Caspase-8; cell death, 39.9 66 0.0022 29.5 7.1 49 119-173 16-85 (271)
143 3hix_A ALR3790 protein; rhodan 39.8 16 0.00056 28.0 2.6 34 119-154 51-85 (106)
144 1nkt_A Preprotein translocase 38.7 42 0.0014 36.4 6.2 69 120-199 152-237 (922)
145 4a4z_A Antiviral helicase SKI2 38.5 48 0.0016 36.4 6.9 69 95-183 63-131 (997)
146 3zyw_A Glutaredoxin-3; metal b 38.4 1.3E+02 0.0043 23.2 7.7 43 120-167 15-63 (111)
147 3fho_A ATP-dependent RNA helic 37.7 52 0.0018 32.7 6.6 95 95-201 167-267 (508)
148 2ipc_A Preprotein translocase 37.0 70 0.0024 34.9 7.6 72 120-202 120-211 (997)
149 2xgj_A ATP-dependent RNA helic 36.4 44 0.0015 36.7 6.2 86 95-202 110-201 (1010)
150 1vp8_A Hypothetical protein AF 33.7 2.4E+02 0.0083 24.6 9.3 78 96-185 24-108 (201)
151 3fe2_A Probable ATP-dependent 33.5 11 0.00037 33.4 0.6 37 25-61 183-221 (242)
152 3nhv_A BH2092 protein; alpha-b 33.5 22 0.00075 29.1 2.5 34 119-154 71-106 (144)
153 1tq1_A AT5G66040, senescence-a 32.9 20 0.00068 28.6 2.1 37 119-160 81-118 (129)
154 3hjh_A Transcription-repair-co 32.6 1.3E+02 0.0045 29.9 8.5 107 96-212 24-144 (483)
155 1rif_A DAR protein, DNA helica 32.5 77 0.0026 28.5 6.3 74 95-183 137-212 (282)
156 3sxu_A DNA polymerase III subu 32.5 2.1E+02 0.0072 23.6 11.6 82 99-203 24-105 (150)
157 1gmx_A GLPE protein; transfera 32.4 18 0.00062 27.7 1.7 34 119-154 57-91 (108)
158 2h54_A Caspase-1; allosteric s 31.6 1E+02 0.0034 26.4 6.5 48 120-173 43-101 (178)
159 3d1p_A Putative thiosulfate su 31.3 24 0.00083 28.3 2.4 34 119-154 90-124 (139)
160 2d7d_A Uvrabc system protein B 31.2 1.1E+02 0.0037 31.8 7.9 86 95-189 41-148 (661)
161 2hhg_A Hypothetical protein RP 31.2 21 0.00071 28.7 1.9 34 119-154 85-119 (139)
162 2yan_A Glutaredoxin-3; oxidore 31.0 1.6E+02 0.0056 21.9 7.5 44 121-169 17-66 (105)
163 2fsx_A RV0390, COG0607: rhodan 31.0 26 0.00089 28.6 2.5 33 120-154 80-113 (148)
164 3e4c_A Caspase-1; zymogen, inf 30.6 1E+02 0.0035 28.7 6.9 47 121-173 61-118 (302)
165 3flh_A Uncharacterized protein 29.9 15 0.00051 29.2 0.8 34 119-154 70-105 (124)
166 2dko_A Caspase-3; low barrier 29.8 1.3E+02 0.0045 24.8 6.7 81 120-211 16-113 (146)
167 3fmo_B ATP-dependent RNA helic 28.9 16 0.00054 33.9 0.9 36 26-61 243-281 (300)
168 3h11_A CAsp8 and FADD-like apo 28.9 34 0.0012 31.6 3.2 64 119-189 42-109 (272)
169 2wem_A Glutaredoxin-related pr 28.5 2.1E+02 0.0072 22.3 8.0 24 121-144 20-49 (118)
170 1qxn_A SUD, sulfide dehydrogen 28.4 23 0.00079 28.7 1.7 35 118-154 80-115 (137)
171 3ilm_A ALR3790 protein; rhodan 28.3 31 0.0011 28.1 2.5 34 119-154 55-89 (141)
172 3fmp_B ATP-dependent RNA helic 28.2 1.2E+02 0.0041 29.4 7.4 95 95-202 140-244 (479)
173 1qtn_A Caspase-8; apoptosis, d 28.2 1.6E+02 0.0056 24.7 7.2 39 130-174 54-92 (164)
174 3p45_A Caspase-6; protease, hu 27.3 1.7E+02 0.0056 25.2 7.1 49 120-174 44-106 (179)
175 1pyo_A Caspase-2; apoptosis, c 27.2 1.3E+02 0.0044 25.5 6.3 49 119-173 32-94 (167)
176 2wci_A Glutaredoxin-4; redox-a 26.0 2.6E+02 0.0087 22.5 8.9 43 121-168 35-83 (135)
177 1z63_A Helicase of the SNF2/RA 25.7 66 0.0023 31.5 4.9 71 96-183 66-136 (500)
178 3dmn_A Putative DNA helicase; 25.3 2.2E+02 0.0076 23.5 7.6 64 120-203 61-124 (174)
179 2fp3_A Caspase NC; apoptosis, 24.4 2.4E+02 0.0082 26.3 8.3 102 119-227 60-181 (316)
180 1m72_A Caspase-1; caspase, cys 24.2 1.9E+02 0.0065 26.3 7.4 80 121-211 33-128 (272)
181 3o8b_A HCV NS3 protease/helica 23.7 82 0.0028 32.9 5.3 67 120-202 257-327 (666)
182 2j48_A Two-component sensor ki 23.6 1.6E+02 0.0055 21.1 5.8 28 121-150 2-29 (119)
183 3gx8_A Monothiol glutaredoxin- 23.4 2.6E+02 0.009 21.7 8.4 26 121-148 16-47 (121)
184 3mwy_W Chromo domain-containin 22.8 92 0.0031 33.0 5.6 78 98-182 267-352 (800)
185 2j32_A Caspase-3; Pro-caspase3 22.8 1.9E+02 0.0066 25.8 7.1 63 120-189 16-95 (250)
186 1vee_A Proline-rich protein fa 22.7 31 0.0011 27.6 1.5 35 120-159 74-109 (134)
187 3h1t_A Type I site-specific re 22.7 1.6E+02 0.0053 29.6 7.1 93 95-204 207-313 (590)
188 3od5_A Caspase-6; caspase doma 22.5 1.7E+02 0.0059 26.7 6.8 48 120-173 21-82 (278)
189 3iuy_A Probable ATP-dependent 22.3 20 0.00069 31.1 0.3 36 26-61 175-212 (228)
190 3mhy_A PII-like protein PZ; PI 22.0 49 0.0017 26.0 2.5 26 204-229 71-96 (112)
191 2lnd_A De novo designed protei 21.4 2.6E+02 0.0087 20.8 7.3 61 100-172 37-99 (112)
192 3sir_A Caspase; hydrolase; 2.6 21.2 1.3E+02 0.0044 27.2 5.6 63 121-190 21-99 (259)
193 3hjh_A Transcription-repair-co 21.2 29 0.001 34.8 1.2 65 120-201 382-446 (483)
194 3gr0_A Protein PRGH; type III 20.8 2.7E+02 0.0092 24.3 7.2 50 119-174 25-74 (197)
195 3a5f_A Dihydrodipicolinate syn 20.6 3.4E+02 0.012 24.6 8.5 12 159-170 51-62 (291)
196 3gr1_A Protein PRGH; type III 20.4 3.1E+02 0.011 24.5 7.7 51 119-175 25-75 (227)
197 3cg4_A Response regulator rece 20.3 2.8E+02 0.0094 20.9 6.9 24 121-144 8-31 (142)
198 1q0u_A Bstdead; DEAD protein, 20.0 34 0.0012 29.4 1.3 36 26-61 158-195 (219)
No 1
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=8.9e-29 Score=263.45 Aligned_cols=221 Identities=16% Similarity=0.228 Sum_probs=124.6
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
..+...|...|...... +.++||||+|+..++.|++.|.+.| +++.++|| ++++.+|..++++|+.|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~------~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~---~~~~~~R~~~~~~f~~g~~ 490 (664)
T 1c4o_A 422 ENQILDLMEGIRERAAR------GERTLVTVLTVRMAEELTSFLVEHG--IRARYLHH---ELDAFKRQALIRDLRLGHY 490 (664)
T ss_dssp TTHHHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---TCCHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHHhcC--CCceeecC---CCCHHHHHHHHHHhhcCCc
Confidence 34666666666554432 5799999999999999999999998 89999999 9999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEcCC-----CCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHHHHhHHHHHHH
Q psy4150 177 NTLIATSVGEEGLDIGEIDLVICFDA-----QKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251 (395)
Q Consensus 177 ~vLVaT~v~~~GlDip~v~~VI~~d~-----p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~ 251 (395)
+|||||+++++|+|+|+|++||++|. |++..+|+||+|||||.+.|.+++++...+.... .........
T Consensus 491 ~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~------~~i~~~~~~ 564 (664)
T 1c4o_A 491 DCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARGEVWLYADRVSEAMQ------RAIEETNRR 564 (664)
T ss_dssp SEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCHHHH------HHHHHHHHH
T ss_pred eEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCHHHH------HHHHHHHHH
Confidence 99999999999999999999999998 8999999999999999999999988876544322 112222222
Q ss_pred HcccchhhhhcccCCCCCCCCcchhhhhhcccccccCCCCCCCCCCchhhHHhhhcchhhhccCCCCCcccccccchhhh
Q psy4150 252 INNKSIYANLAKNGPRMIPAHVTPRIKCLHIVVKDRVTPAKPSKKKPKENEKANKKSKKKLETDGNSEPAGKQNKTNAKK 331 (395)
Q Consensus 252 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 331 (395)
......++..+...|..+...+...+. . ... . . . . -....+.+++. ..+.
T Consensus 565 r~~~~~~~~~~~~~p~~~~~~i~~~~~----~--~~~--~-~-~----~--~~~~~~~~~~~--------------~~i~ 614 (664)
T 1c4o_A 565 RALQEAYNLEHGITPETVRKEVRAVIR----P--EGY--E-E-A----P--LEADLSGEDLR--------------ERIA 614 (664)
T ss_dssp HHHHHHHHHHHTCCCCCC--------------------------------------------------------------
T ss_pred HHHHHHHHHhcCCCCcchhHHHHHHhh----h--hhc--c-h-h----h--hhhhcCHHHHH--------------HHHH
Confidence 222334444555566666555544332 0 000 0 0 0 0 01122334444 6899
Q ss_pred hhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 332 TKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 332 ~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
+++++|.+||++|+ ||.||++||+|..|++++.
T Consensus 615 ~l~~~m~~aa~~l~--fe~Aa~lRd~i~~l~~~~~ 647 (664)
T 1c4o_A 615 ELELAMWQAAEALD--FERAARLRDEIRALEARLQ 647 (664)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999998863
No 2
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.96 E-value=1.6e-28 Score=261.30 Aligned_cols=228 Identities=18% Similarity=0.338 Sum_probs=156.0
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
..+...|...|..... .+.++||||+|+..++.|++.|.+.| +++.++|| ++++.+|..++++|+.|++
T Consensus 428 ~~~~~~Ll~~l~~~~~------~~~~vlVf~~t~~~ae~L~~~L~~~g--i~~~~lh~---~~~~~~R~~~l~~f~~g~~ 496 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIE------RNERVLVTTLTKKMSEDLTDYLKEIG--IKVNYLHS---EIKTLERIEIIRDLRLGKY 496 (661)
T ss_dssp TTHHHHHHHHHHHHHT------TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---TCCHHHHHHHHHHHHHTSC
T ss_pred cchHHHHHHHHHHHHh------cCCeEEEEECCHHHHHHHHHHHHhcC--CCeEEEeC---CCCHHHHHHHHHHHhcCCe
Confidence 3456666665555432 35799999999999999999999998 89999999 9999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEcCC-----CCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHHHHhHHHHHHH
Q psy4150 177 NTLIATSVGEEGLDIGEIDLVICFDA-----QKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251 (395)
Q Consensus 177 ~vLVaT~v~~~GlDip~v~~VI~~d~-----p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~~~~~~~i~~~ 251 (395)
+|||||+++++|+|+|+|++||++|. |.+..+|+||+|||||.+.|.+++++++.+..... ....+...
T Consensus 497 ~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~~~~~------~i~~~~~~ 570 (661)
T 2d7d_A 497 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITKSMEI------AINETKRR 570 (661)
T ss_dssp SEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCHHHHH------HHHHHHHH
T ss_pred EEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCHHHHH------HHHHHHHH
Confidence 99999999999999999999999998 99999999999999999899999888776543221 11222222
Q ss_pred HcccchhhhhcccCCCCCCCCcchhhhhhcccccccCCCCCCCCCCchhhHHhhhcchhhhccCCCCCcccccccchhhh
Q psy4150 252 INNKSIYANLAKNGPRMIPAHVTPRIKCLHIVVKDRVTPAKPSKKKPKENEKANKKSKKKLETDGNSEPAGKQNKTNAKK 331 (395)
Q Consensus 252 i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 331 (395)
......++..+...|..+...+...+.. ... . ... ..............+++++. +.+.
T Consensus 571 r~i~~~~~~~~~~~p~~~~~~i~~~~~~-~~~----~-~~~-~~~~~~~~~~~~~~~~~~~~--------------~~i~ 629 (661)
T 2d7d_A 571 REQQERFNEEHGITPKTINKEIRDVIRA-TVA----A-EDK-AEYKTKAAPKLSKMTKKERQ--------------KVVE 629 (661)
T ss_dssp HHHHHHHHHHHTCCCCCCCC--------------------------------------HHHH--------------HHHH
T ss_pred HHHHHHhhhhcCCCCCchhhHHHHHHhh-ccc----c-ccc-cccchhhhhhhhhCCHHHHH--------------HHHH
Confidence 2222334444566666666665544320 000 0 000 00000000011123444444 7899
Q ss_pred hhccchhhhhHHHHHHHHhhhhchhhHHHHHhh
Q psy4150 332 TKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQ 364 (395)
Q Consensus 332 ~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~ 364 (395)
+++++|.+||++|+ ||.||++||+|..|+++
T Consensus 630 ~l~~~m~~aa~~~~--fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 630 QMEHEMKEAAKALD--FERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHC------
T ss_pred HHHHHHHHHHHccC--HHHHHHHHHHHHHHHhc
Confidence 99999999999999 99999999999999753
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.95 E-value=1.3e-27 Score=242.27 Aligned_cols=193 Identities=21% Similarity=0.247 Sum_probs=151.2
Q ss_pred HHHHHHHhcchHHHHHHHHhC----CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceee--eccc
Q psy4150 25 IQRDFHVTHSLASALENLVTY----GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEY--AWSH 97 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~----g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~ 97 (395)
.|+|.++++||...+..+..+ ..++++.||||++.... .+..++.++.+..+... .. ....+.+.+ ....
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~-~~--~~~~i~~~~~~~~~~ 286 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV-GG--ACSDVKQTIYEVNKY 286 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST-TC--CCTTEEEEEEECCGG
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc-cc--cccccceEEEEeCcH
Confidence 399999999999998888764 46789999999987652 22233333322111000 00 001122222 3345
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.|...|.++|... ..++||||+|+..|+.+++.|.+.+ +.+..+|| ++++.+|..++++|++|+++
T Consensus 287 ~k~~~l~~~l~~~---------~~~~lVF~~t~~~a~~l~~~L~~~~--~~~~~lhg---~~~~~~R~~~l~~F~~g~~~ 352 (434)
T 2db3_A 287 AKRSKLIEILSEQ---------ADGTIVFVETKRGADFLASFLSEKE--FPTTSIHG---DRLQSQREQALRDFKNGSMK 352 (434)
T ss_dssp GHHHHHHHHHHHC---------CTTEEEECSSHHHHHHHHHHHHHTT--CCEEEEST---TSCHHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHhC---------CCCEEEEEeCcHHHHHHHHHHHhCC--CCEEEEeC---CCCHHHHHHHHHHHHcCCCc
Confidence 6888888777652 2459999999999999999999998 99999999 99999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 178 TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 178 vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
|||||+++++|||+|+|++||+||+|++..+|+||+|||||.| .|.+++|+++.++.
T Consensus 353 vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~ 410 (434)
T 2db3_A 353 VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDR 410 (434)
T ss_dssp EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCG
T ss_pred EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccH
Confidence 9999999999999999999999999999999999999999997 68888888765544
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.94 E-value=2.7e-26 Score=204.22 Aligned_cols=125 Identities=20% Similarity=0.315 Sum_probs=114.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
....|+..|.++|... .+.++||||+++..++.+++.|...+ +.+..+|| +|++.+|..+++.|++|
T Consensus 14 ~~~~K~~~L~~ll~~~--------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg---~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL--------EFNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHR---GMPQEERLSRYQQFKDF 80 (172)
T ss_dssp CGGGHHHHHHHHHHHS--------CCSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhC--------CCCcEEEEECCHHHHHHHHHHHHhcC--CCEEEEEC---CCCHHHHHHHHHHHHCC
Confidence 3567999988888752 45799999999999999999999988 89999999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+++++++.+
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHH
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChh
Confidence 9999999999999999999999999999999999999999999997 677777776543
No 5
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=1.1e-25 Score=198.25 Aligned_cols=124 Identities=31% Similarity=0.527 Sum_probs=113.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
..+.|+..|.++|... .+.++||||+++..++.+++.|...+ +.+..+|| +|++.+|..+++.|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~hg---~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--------NPDSCIIFCRTKEHVNQLTDELDDLG--YPCDKIHG---GMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp CGGGHHHHHHHHHHHH--------CCSSEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhc--------CCCcEEEEECCHHHHHHHHHHHHHcC--CcEEEEeC---CCCHHHHHHHHHHHHcC
Confidence 3567999999888763 35799999999999999999999988 89999999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.++++++..
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 142 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF 142 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH
Confidence 9999999999999999999999999999999999999999999997 67777777643
No 6
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=2.1e-25 Score=196.73 Aligned_cols=124 Identities=30% Similarity=0.475 Sum_probs=110.4
Q ss_pred ccc-HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 96 SHL-KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 96 ~~~-K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
... |+..|.+++..+ .+.++||||+++..++.++..|...+ +.+..+|| +|++.+|..+++.|++|
T Consensus 13 ~~~~K~~~l~~ll~~~--------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 13 EEEYKYECLTDLYDSI--------SVTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYS---DLPQQERDTIMKEFRSG 79 (165)
T ss_dssp SGGGHHHHHHHHHHHT--------TCSCEEEEESSHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHTT
T ss_pred cchhHHHHHHHHHHhC--------CCCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEC---CCCHHHHHHHHHHHHcC
Confidence 344 999988888763 35899999999999999999999988 89999999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+++++++.+
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 9999999999999999999999999999999999999999999996 688888877554
No 7
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.93 E-value=8.5e-26 Score=204.66 Aligned_cols=126 Identities=30% Similarity=0.454 Sum_probs=112.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
....|+..|.++|.. .+.++||||+++..++.+++.|...+ +.+..+|| +|++.+|..+++.|++|
T Consensus 38 ~~~~K~~~L~~~l~~---------~~~~~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg---~~~~~~R~~~l~~F~~g 103 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---------TPPPVLIFAEKKADVDAIHEYLLLKG--VEAVAIHG---GKDQEERTKAIEAFREG 103 (191)
T ss_dssp CGGGHHHHHHHHHTT---------SCSCEEEECSCHHHHHHHHHHHHHHT--CCEEEECT---TSCHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHh---------CCCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeC---CCCHHHHHHHHHHHhcC
Confidence 456688888777653 24689999999999999999999988 99999999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+++|++..++.
T Consensus 104 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 104 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp SCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred CCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 9999999999999999999999999999999999999999999997 78888888766444
No 8
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=197.73 Aligned_cols=131 Identities=24% Similarity=0.371 Sum_probs=110.2
Q ss_pred cceeeeccc---cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHH
Q psy4150 89 MSSEYAWSH---LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 89 ~~~~~~~~~---~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~ 165 (395)
+.+.|.... .|+..|.+++.. ....++||||+++..++.++..|...+ +.+..+|| +|++.+|.
T Consensus 8 i~q~~~~~~~~~~K~~~L~~ll~~--------~~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~g---~~~~~~R~ 74 (175)
T 2rb4_A 8 IRQYYVLCEHRKDKYQALCNIYGS--------ITIGQAIIFCQTRRNAKWLTVEMIQDG--HQVSLLSG---ELTVEQRA 74 (175)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHTT--------SCCSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECS---SCCHHHHH
T ss_pred ceEEEEEcCChHhHHHHHHHHHHh--------CCCCCEEEEECCHHHHHHHHHHHHHcC--CcEEEEeC---CCCHHHHH
Confidence 344555433 277777776654 245799999999999999999999998 89999999 99999999
Q ss_pred HHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCC------CChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQ------KSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p------~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
.+++.|++|.++|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.| .|.+++++...+
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 99999999999999999999999999999999999999 89999999999999996 677777776543
No 9
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=2.3e-25 Score=204.81 Aligned_cols=125 Identities=30% Similarity=0.448 Sum_probs=114.1
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.....|+..|.+++... .+.++||||+++..++.+++.|...+ +.+..+|| +|++.+|..+++.|++
T Consensus 13 ~~~~~k~~~l~~ll~~~--------~~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~lhg---~~~~~~r~~~~~~f~~ 79 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYVA--------SPDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHG---DLSQGERERVLGAFRQ 79 (212)
T ss_dssp CCTTSHHHHHHHHHHHH--------CCSCEEEECSSHHHHHHHHHHHHHHT--CCEEEECS---SSCHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhC--------CCCeEEEEeCCHHHHHHHHHHHHHcC--CCEEEEEC---CCCHHHHHHHHHHHHC
Confidence 34567999999988753 35799999999999999999999988 89999999 9999999999999999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|.++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.| .|.++++++..
T Consensus 80 g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~ 138 (212)
T 3eaq_A 80 GEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR 138 (212)
T ss_dssp SSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGG
T ss_pred CCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999999999997 77777777653
No 10
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.93 E-value=3.5e-25 Score=199.47 Aligned_cols=125 Identities=26% Similarity=0.394 Sum_probs=100.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
....|+..|.++|... ..+.++||||+++..++.++..|...| +.+..+|| +|++.+|..+++.|++|
T Consensus 28 ~~~~K~~~L~~ll~~~-------~~~~k~lVF~~~~~~~~~l~~~L~~~g--~~~~~lhg---~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-------GKDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHG---DRSQRDREEALHQFRSG 95 (185)
T ss_dssp CGGGHHHHHHHHHHHC--------CCSCEEEEESCHHHHHHHHHHHHHTT--CCEEEEC-----------CHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhc-------CCCCeEEEEECCHHHHHHHHHHHHHcC--CceEEEeC---CCCHHHHHHHHHHHHcC
Confidence 4567999999888763 246899999999999999999999988 89999999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+++|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.| .|.+++++++.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 153 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER 153 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh
Confidence 9999999999999999999999999999999999999999999997 67777777653
No 11
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=2e-24 Score=208.94 Aligned_cols=126 Identities=30% Similarity=0.451 Sum_probs=112.2
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
+....|+..|.+++..+ .+.++||||+|+..++.|++.|...+ +.+..+|| +|++.+|..+++.|+.
T Consensus 10 ~~~~~K~~~L~~ll~~~--------~~~~~LVF~~t~~~~~~l~~~L~~~g--~~~~~lhg---~l~~~~r~~~~~~f~~ 76 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVA--------SPDRAMVFTRTKAETEEIAQGLLRLG--HPAQALHG---DMSQGERERVMGAFRQ 76 (300)
T ss_dssp CCSSSHHHHHHHHHHHH--------CCSSEEEECSSHHHHHHHHHHHHTTT--CCEEEECS---CCCTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhc--------CCCCEEEEECCHHHHHHHHHHHHhCC--CCEEEEeC---CCCHHHHHHHHHHhhc
Confidence 34567999999988764 25899999999999999999999988 99999999 9999999999999999
Q ss_pred CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 174 g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
|.++|||||+++++|||+|+|++||+||+|++..+|+||+|||||.| .|.+++|++..+
T Consensus 77 g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 77 GEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp TSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSST
T ss_pred CCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 99999999999999999999999999999999999999999999997 788888776543
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.91 E-value=2.4e-24 Score=214.85 Aligned_cols=190 Identities=21% Similarity=0.311 Sum_probs=147.0
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeec---cccH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW---SHLK 99 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~K 99 (395)
|+|.+...++...+..+... ...+.+.+|||++.... ....++.++....+... ......+.+.+.. ...|
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~k 263 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD---ELTLEGIKQFFVAVEREEWK 263 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGG---GCSCTTEEEEEEEESSTTHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCc---cccCCCceEEEEEeCcHHhH
Confidence 99999999988887776664 34688999999987542 22333333321111000 0111112222222 2337
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...|.+++... ...++||||+++..++.+++.|.+.+ +.+..+|| ++++.+|..+++.|++|+++||
T Consensus 264 ~~~l~~~~~~~--------~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~---~~~~~~r~~~~~~f~~g~~~vl 330 (410)
T 2j0s_A 264 FDTLCDLYDTL--------TITQAVIFCNTKRKVDWLTEKMREAN--FTVSSMHG---DMPQKERESIMKEFRSGASRVL 330 (410)
T ss_dssp HHHHHHHHHHH--------TSSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECT---TSCHHHHHHHHHHHHHTSSCEE
T ss_pred HHHHHHHHHhc--------CCCcEEEEEcCHHHHHHHHHHHHhCC--CceEEeeC---CCCHHHHHHHHHHHHCCCCCEE
Confidence 88887777654 24699999999999999999999998 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+++++++.
T Consensus 331 v~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 383 (410)
T 2j0s_A 331 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND 383 (410)
T ss_dssp EECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGG
T ss_pred EECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHH
Confidence 99999999999999999999999999999999999999997 67777777653
No 13
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=217.02 Aligned_cols=192 Identities=20% Similarity=0.261 Sum_probs=144.9
Q ss_pred HHHHHHhcchHHHHHHHHhC------CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceee--ecc
Q psy4150 26 QRDFHVTHSLASALENLVTY------GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEY--AWS 96 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~------g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~ 96 (395)
|+|.+...+|...+..+... +..+.+.+|||++.... ....++.++.+..+... ......+.+.+ ...
T Consensus 183 Eah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 259 (417)
T 2i4i_A 183 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV---GSTSENITQKVVWVEE 259 (417)
T ss_dssp SHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-------CCSSEEEEEEECCG
T ss_pred ChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC---CCCccCceEEEEEecc
Confidence 99999999999888887763 24678899999987542 11222222211100000 00001122222 334
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
..|...|.+++... ..+.++||||+++..++.+++.|.+.+ +.+..+|| ++++.+|..+++.|++|++
T Consensus 260 ~~~~~~l~~~l~~~-------~~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~h~---~~~~~~r~~~~~~f~~g~~ 327 (417)
T 2i4i_A 260 SDKRSFLLDLLNAT-------GKDSLTLVFVETKKGADSLEDFLYHEG--YACTSIHG---DRSQRDREEALHQFRSGKS 327 (417)
T ss_dssp GGHHHHHHHHHHTC-------CTTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHHTSS
T ss_pred HhHHHHHHHHHHhc-------CCCCeEEEEECCHHHHHHHHHHHHHCC--CCeeEecC---CCCHHHHHHHHHHHHcCCC
Confidence 56777777777653 346899999999999999999999988 89999999 9999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 177 NTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 177 ~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
+|||||+++++|+|+|++++||+||+|++..+|+||+||+||.| .|.+++++.+.+
T Consensus 328 ~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 328 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 384 (417)
T ss_dssp CEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGG
T ss_pred CEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEcccc
Confidence 99999999999999999999999999999999999999999997 577777776433
No 14
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.91 E-value=2e-24 Score=224.86 Aligned_cols=200 Identities=18% Similarity=0.212 Sum_probs=143.3
Q ss_pred HHHHHHhcchHHHHHHHHhC---------CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccc-cccccceeee
Q psy4150 26 QRDFHVTHSLASALENLVTY---------GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKL-DINIMSSEYA 94 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~---------g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 94 (395)
|+|.+++++|...++.|... ...+.+.+|||++..+. ....++.++....+........ ....+.+.+.
T Consensus 234 Eah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (563)
T 3i5x_A 234 EADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVV 313 (563)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEE
T ss_pred CHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEE
Confidence 99999999998887776543 14578999999987642 2233333321110000000000 0011222222
Q ss_pred cc---ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WS---HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~---~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
.. ..+...+...+...+.. ...+.++||||+|+..|+.+++.|....+ .+.+..+|| +|++.+|..+++.
T Consensus 314 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~---~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 314 ISEKFANSIFAAVEHIKKQIKE---RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG---KITQNKRTSLVKR 387 (563)
T ss_dssp EESSTTHHHHHHHHHHHHHHHH---TTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEEST---TSCHHHHHHHHHH
T ss_pred ECchhHhhHHHHHHHHHHHHhh---cCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecC---CCCHHHHHHHHHH
Confidence 22 22333333333333322 24568999999999999999999988622 288999999 9999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|++|+++|||||+++++|||+|+|++||+||+|+++.+|+||+|||||.| .|.+++++++.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 449 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD 449 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchh
Confidence 99999999999999999999999999999999999999999999999997 67778777753
No 15
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.91 E-value=2.1e-24 Score=226.19 Aligned_cols=200 Identities=18% Similarity=0.212 Sum_probs=144.0
Q ss_pred HHHHHHhcchHHHHHHHHhC---------CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccc-cccccceeee
Q psy4150 26 QRDFHVTHSLASALENLVTY---------GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKL-DINIMSSEYA 94 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~---------g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 94 (395)
|+|.++.+||...++.|... ...+++.||||++..+. .+..++.++....+........ ....+.+.+.
T Consensus 183 Eah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 262 (579)
T 3sqw_A 183 EADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVV 262 (579)
T ss_dssp THHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEE
T ss_pred ChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEE
Confidence 99999999999887776553 14578999999987652 2333443332111100000000 0011222222
Q ss_pred cc---ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WS---HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~---~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
.. ..+...+...+...+.. ...+.++||||+|+..|+.+++.|....+ .+.+..+|| +|++.+|..+++.
T Consensus 263 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg---~~~~~~R~~~~~~ 336 (579)
T 3sqw_A 263 ISEKFANSIFAAVEHIKKQIKE---RDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHG---KITQNKRTSLVKR 336 (579)
T ss_dssp EESSTTHHHHHHHHHHHHHHHH---TTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEEST---TSCHHHHHHHHHH
T ss_pred EecchhhhHHHHHHHHHHHHhh---cCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecC---CCCHHHHHHHHHH
Confidence 22 22333333333333322 24568999999999999999999988621 288999999 9999999999999
Q ss_pred HhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 171 FRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|+.|+++|||||+++++|||+|+|++||+||+|+++..|+||+|||||.| .|.+++++++.
T Consensus 337 F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 398 (579)
T 3sqw_A 337 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD 398 (579)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG
T ss_pred hhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEccc
Confidence 99999999999999999999999999999999999999999999999997 67777777753
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.91 E-value=5.7e-24 Score=210.14 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=143.2
Q ss_pred HHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee--ccccH
Q psy4150 26 QRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA--WSHLK 99 (395)
Q Consensus 26 ead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~K 99 (395)
|++.+.. .++...+..+... ...+.+.+|||++.... .+..++.++....+.. ........+.+.+. ....|
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 237 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD--ETKLTLHGLQQYYVKLKDNEK 237 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCC--CCCCCCTTCEEEEEECCGGGH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecC--ccccCcccceEEEEEcCchhH
Confidence 7887766 4666666655543 35678899999987542 1122222221110000 00011111222222 34567
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...|.+++.. ..+.++||||+++..++.+++.|...+ +.+..+|| ++++.+|..+++.|++|+.+||
T Consensus 238 ~~~l~~~l~~--------~~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vl 304 (391)
T 1xti_A 238 NRKLFDLLDV--------LEFNQVVIFVKSVQRCIALAQLLVEQN--FPAIAIHR---GMPQEERLSRYQQFKDFQRRIL 304 (391)
T ss_dssp HHHHHHHHHH--------SCCSEEEEECSCHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHh--------cCCCcEEEEeCcHHHHHHHHHHHHhCC--CcEEEEeC---CCCHHHHHHHHHHHhcCCCcEE
Confidence 7777777765 246899999999999999999999998 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
|||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+++++++.++
T Consensus 305 v~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 305 VATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred EECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 99999999999999999999999999999999999999997 6777777765443
No 17
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.84 E-value=6.6e-26 Score=201.05 Aligned_cols=122 Identities=29% Similarity=0.465 Sum_probs=111.0
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCc
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~ 176 (395)
..|+..|.+++... .+.++||||+++..++.+++.|...+ +.+..+|| +|++.+|..+++.|++|++
T Consensus 15 ~~k~~~l~~ll~~~--------~~~~~iVF~~~~~~~~~l~~~L~~~~--~~~~~~~g---~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--------EATRSIVFVRKRERVHELANWLREAG--INNCYLEG---EMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 55888888877652 35799999999999999999999988 89999999 9999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 177 NTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 177 ~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.| .|.+++++...
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 137 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAH 137 (170)
Confidence 99999999999999999999999999999999999999999997 67777776554
No 18
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.90 E-value=4.8e-24 Score=210.22 Aligned_cols=192 Identities=19% Similarity=0.302 Sum_probs=139.3
Q ss_pred HHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeecc---cc
Q psy4150 26 QRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWS---HL 98 (395)
Q Consensus 26 ead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~ 98 (395)
|++.+.. .++......+... ...+.+.+|||++.... ....++.++....+... ......+.+.+... ..
T Consensus 153 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 229 (395)
T 3pey_A 153 EADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN---EVNVDAIKQLYMDCKNEAD 229 (395)
T ss_dssp THHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG---GCSCTTEEEEEEECSSHHH
T ss_pred ChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc---ccccccccEEEEEcCchHH
Confidence 8887777 6777776666554 34678899999886541 11112211111100000 00111122223322 23
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|...+..++.. ..+.++||||+++..++.+++.|...+ +.+..+|| ++++.+|..+++.|++|+++|
T Consensus 230 ~~~~l~~~~~~--------~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~g~~~v 296 (395)
T 3pey_A 230 KFDVLTELYGL--------MTIGSSIIFVATKKTANVLYGKLKSEG--HEVSILHG---DLQTQERDRLIDDFREGRSKV 296 (395)
T ss_dssp HHHHHHHHHTT--------TTSSEEEEECSCHHHHHHHHHHHHHTT--CCCEEECT---TSCHHHHHHHHHHHHTTSCCE
T ss_pred HHHHHHHHHHh--------ccCCCEEEEeCCHHHHHHHHHHHHhcC--CcEEEeCC---CCCHHHHHHHHHHHHCCCCCE
Confidence 44444443322 346899999999999999999999998 89999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCC------ChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQK------SPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~------s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
||||+++++|+|+|++++||+||+|+ ++.+|+||+||+||.| .|.+++++.+.++
T Consensus 297 lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 358 (395)
T 3pey_A 297 LITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 358 (395)
T ss_dssp EEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHH
T ss_pred EEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHH
Confidence 99999999999999999999999999 9999999999999997 5777777765443
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.90 E-value=3e-24 Score=213.72 Aligned_cols=191 Identities=20% Similarity=0.292 Sum_probs=131.9
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee---ccccH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA---WSHLK 99 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~K 99 (395)
|++.+...++...+..+... ...+.+.+|||++.... ....++.++...... ........+.+.+. ....|
T Consensus 191 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 267 (414)
T 3eiq_A 191 EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK---KEELTLEGIRQFYINVEREEWK 267 (414)
T ss_dssp SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCC---CCCCCTTSCCEEEEECSSSTTH
T ss_pred CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEec---CCccCCCCceEEEEEeChHHhH
Confidence 88888888888776666554 45678899999876542 122222222111000 00011111222222 23347
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
+..+.+++.. ....++||||+++..++.+++.|...+ +.+..+|| ++++.+|..+++.|++|+++||
T Consensus 268 ~~~l~~~~~~--------~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~h~---~~~~~~r~~~~~~f~~g~~~vl 334 (414)
T 3eiq_A 268 LDTLCDLYET--------LTITQAVIFINTRRKVDWLTEKMHARD--FTVSAMHG---DMDQKERDVIMREFRSGSSRVL 334 (414)
T ss_dssp HHHHHHHHHS--------SCCSSCEEECSCHHHHHHHHHHHHTTT--CCCEEC------CHHHHHHHHHHHHSCC---CE
T ss_pred HHHHHHHHHh--------CCCCcEEEEeCCHHHHHHHHHHHHhcC--CeEEEecC---CCCHHHHHHHHHHHHcCCCcEE
Confidence 7777766654 345799999999999999999999988 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
|||+++++|+|+|++++||+||+|++..+|+||+||+||.| .|.+++++++.+
T Consensus 335 v~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 335 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp EECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred EECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 99999999999999999999999999999999999999997 688888877643
No 20
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.90 E-value=8.6e-24 Score=210.04 Aligned_cols=191 Identities=17% Similarity=0.267 Sum_probs=140.2
Q ss_pred HHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeecc---cc
Q psy4150 26 QRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWS---HL 98 (395)
Q Consensus 26 ead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~ 98 (395)
|++.+.. .++......+... ...+.+.+|||++.... .....+.++....+..... ....+.+.+... ..
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 252 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE---TLDTIKQYYVLCSSRDE 252 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGS---SCTTEEEEEEECSSHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccc---cccCceEEEEEcCChHH
Confidence 8888776 6777666666554 34678899999987541 1122222222111111000 011122333322 34
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|...|.+++... ...++||||+++..++.+++.|...+ +.+..+|| +|++.+|..+++.|++|+++|
T Consensus 253 ~~~~l~~~~~~~--------~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~g~~~v 319 (412)
T 3fht_A 253 KFQALCNLYGAI--------TIAQAMIFCHTRKTASWLAAELSKEG--HQVALLSG---EMMVEQRAAVIERFREGKEKV 319 (412)
T ss_dssp HHHHHHHHHHHH--------SSSEEEEECSSHHHHHHHHHHHHHTT--CCCEEECT---TSCHHHHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHhhc--------CCCCEEEEeCCHHHHHHHHHHHHhCC--CeEEEecC---CCCHHHHHHHHHHHHCCCCcE
Confidence 666666655542 35799999999999999999999998 89999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCC------ChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQK------SPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~------s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
||||+++++|+|+|++++||+||+|+ +..+|+||+||+||.| .|.+++++...+
T Consensus 320 lv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 320 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp EEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 99999999999999999999999995 6689999999999997 567777765533
No 21
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.89 E-value=2.8e-23 Score=206.17 Aligned_cols=190 Identities=19% Similarity=0.270 Sum_probs=143.3
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceee--eccccHH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEY--AWSHLKF 100 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~K~ 100 (395)
|++.+...++...+..+... ...+.+.++||++.... .....+..+....+. .......+.+.+ .....|.
T Consensus 171 EaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~k~ 246 (400)
T 1s2m_A 171 EADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM----EELTLKGITQYYAFVEERQKL 246 (400)
T ss_dssp SHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC----SSCBCTTEEEEEEECCGGGHH
T ss_pred CchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEec----cccccCCceeEEEEechhhHH
Confidence 88888877777777777664 34678889999876541 111111111100000 001111122222 2345677
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..+..++.. ....++||||+++..++.+++.|...+ +.+..+|| ++++.+|..+++.|++|+++|||
T Consensus 247 ~~l~~~~~~--------~~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~g~~~vLv 313 (400)
T 1s2m_A 247 HCLNTLFSK--------LQINQAIIFCNSTNRVELLAKKITDLG--YSCYYSHA---RMKQQERNKVFHEFRQGKVRTLV 313 (400)
T ss_dssp HHHHHHHHH--------SCCSEEEEECSSHHHHHHHHHHHHHHT--CCEEEECT---TSCHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHHhh--------cCCCcEEEEEecHHHHHHHHHHHHhcC--CCeEEecC---CCCHHHHHHHHHHHhcCCCcEEE
Confidence 777776654 345799999999999999999999988 89999999 99999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCc
Q psy4150 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGR 232 (395)
Q Consensus 181 aT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~ 232 (395)
||+++++|+|+|++++||+||+|+++.+|+||+||+||.| .|.+++++...+
T Consensus 314 ~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 314 CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp ESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred EcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 9999999999999999999999999999999999999997 677777776543
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.89 E-value=3.5e-23 Score=213.77 Aligned_cols=136 Identities=28% Similarity=0.524 Sum_probs=80.4
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEecc-----CCCCCHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQ-----SSGVTQQEQKEIM 168 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~-----~~~~~~~~R~~~l 168 (395)
.++|+..|.++|.+++.. ..+.++||||+++.+++.|++.|.... +.+++..+||+ |++|++.+|..++
T Consensus 370 ~~~K~~~L~~~l~~~~~~----~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~ 445 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRY----NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 445 (556)
T ss_dssp CCHHHHHHHHHHHHHHHH----CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----------------------
T ss_pred CChHHHHHHHHHHHHhcC----CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHH
Confidence 478999999999887754 457899999999999999999998861 12566666653 3389999999999
Q ss_pred HHHhc-CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhH
Q psy4150 169 KKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHN 236 (395)
Q Consensus 169 ~~Fk~-g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~ 236 (395)
++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||.+.|.++++++.++..+.
T Consensus 446 ~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 446 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVEN 513 (556)
T ss_dssp --------CCEEEEEC-----------CEEEEETCCSCHHHHHHC---------CCEEEEESCHHHHHH
T ss_pred HHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCcchHHH
Confidence 99999 999999999999999999999999999999999999999999 99999999999888766554
No 23
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=5.4e-23 Score=206.58 Aligned_cols=141 Identities=43% Similarity=0.711 Sum_probs=124.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccC-----CCCCHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS-----SGVTQQEQKEIMK 169 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~-----~~~~~~~R~~~l~ 169 (395)
..++|+..|.++|..++.. ..+.++||||+++..++.+++.|...| +.+..+||+. +++++.+|.++++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~----~~~~k~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~g~~~~~~~~~~~~~~r~~~~~ 413 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQR----KQNSKIIVFTNYRETAKKIVNELVKDG--IKAKRFVGQASKENDRGLSQREQKLILD 413 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHH----CTTCCEEEECSCHHHHHHHHHHHHHTT--CCEEEECCSSCC-------CCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhcc----CCCCeEEEEEccHHHHHHHHHHHHHcC--CCcEEEeccccccccccCCHHHHHHHHH
Confidence 4678999999999987653 457899999999999999999999998 8999999943 2789999999999
Q ss_pred HHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHH
Q psy4150 170 KFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 170 ~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~ 241 (395)
.|++|+++|||||+++++|||+|++++||+||+||++..|+||+||+||.|+|.++.+++.++.++.+....
T Consensus 414 ~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee~~~~~~ 485 (494)
T 1wp9_A 414 EFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYWSS 485 (494)
T ss_dssp HHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHHHHHHC
T ss_pred HHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCCceEEEEEecCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988776654433
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.88 E-value=5.6e-25 Score=224.83 Aligned_cols=193 Identities=17% Similarity=0.263 Sum_probs=29.7
Q ss_pred HHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeec---ccc
Q psy4150 26 QRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAW---SHL 98 (395)
Q Consensus 26 ead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~ 98 (395)
|+|.+.. .++......+... ...+.+.+|||++.... ....++.++.++.+..... ....+.+.+.. ...
T Consensus 243 Eah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE---TLDTIKQYYVLCSSRDE 319 (479)
T ss_dssp CHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC------------------------
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccccc---CcCCceEEEEEeCCHHH
Confidence 8888887 5777666666554 34688999999987652 1122222221111000000 00011222222 234
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|...|..++... ...++||||+++..|+.+++.|...+ +.+..+|| ++++.+|..+++.|++|+++|
T Consensus 320 ~~~~l~~~~~~~--------~~~~~lvF~~s~~~~~~l~~~L~~~~--~~v~~lh~---~~~~~~R~~~~~~f~~g~~~i 386 (479)
T 3fmp_B 320 KFQALCNLYGAI--------TIAQAMIFCHTRKTASWLAAELSKEG--HQVALLSG---EMMVEQRAAVIERFREGKEKV 386 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhc--------cCCceEEEeCcHHHHHHHHHHHHhCC--ccEEEecC---CCCHHHHHHHHHHHHcCCCcE
Confidence 666666655442 34789999999999999999999988 89999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCCC------ChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQK------SPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p~------s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
||||+++++|||+|+|++||+||+|+ +...|+||+|||||.| .|.+++++....+.
T Consensus 387 Lv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~ 449 (479)
T 3fmp_B 387 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM 449 (479)
T ss_dssp ---------------------------------------------------------------
T ss_pred EEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchH
Confidence 99999999999999999999999995 5689999999999997 68888887765544
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=4e-22 Score=194.48 Aligned_cols=186 Identities=18% Similarity=0.327 Sum_probs=142.7
Q ss_pred HHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceee--eccccH
Q psy4150 25 IQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEY--AWSHLK 99 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~K 99 (395)
.|++.+...++...+..+... ...+.+.++||++.... ....++.+..+.. ... ...+.+.+ .....|
T Consensus 154 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~ 226 (367)
T 1hv8_A 154 DEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIK------AKI-NANIEQSYVEVNENER 226 (367)
T ss_dssp ETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEE------CCS-SSSSEEEEEECCGGGH
T ss_pred eCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEE------ecC-CCCceEEEEEeChHHH
Confidence 389988888888776666554 44677888999876541 1111222211110 000 00122222 234567
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
+..+.+++. ..+.++||||+++..++.+++.|.+.+ +.+..+|| ++++.+|..+++.|++|+.+||
T Consensus 227 ~~~l~~~l~---------~~~~~~lvf~~~~~~~~~l~~~L~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vl 292 (367)
T 1hv8_A 227 FEALCRLLK---------NKEFYGLVFCKTKRDTKELASMLRDIG--FKAGAIHG---DLSQSQREKVIRLFKQKKIRIL 292 (367)
T ss_dssp HHHHHHHHC---------STTCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECS---SSCHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHHHHh---------cCCCcEEEEECCHHHHHHHHHHHHhcC--CCeEEeeC---CCCHHHHHHHHHHHHcCCCeEE
Confidence 777766654 236799999999999999999999998 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|||+++++|+|+|++++||+||+|+++.+|+||+||+||.| .|.+++++.+.
T Consensus 293 v~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 345 (367)
T 1hv8_A 293 IATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR 345 (367)
T ss_dssp EECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT
T ss_pred EECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHH
Confidence 99999999999999999999999999999999999999997 78888887654
No 26
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.88 E-value=4e-22 Score=206.79 Aligned_cols=123 Identities=18% Similarity=0.320 Sum_probs=110.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
....+...|.++|..+ .+.++||||+|++.++.+++.|...| +.+..+|| +|++.+|..+++.|++|
T Consensus 219 ~~~~~~~~l~~~l~~~--------~~~~~IVf~~sr~~~e~l~~~L~~~g--~~~~~~h~---~l~~~~R~~~~~~f~~g 285 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ--------RGKSGIIYCNSRAKVEDTAARLQSKG--ISAAAYHA---GLENNVRADVQEKFQRD 285 (523)
T ss_dssp ECSSHHHHHHHHHHHT--------TTCCEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHTT
T ss_pred eCCCHHHHHHHHHHhc--------CCCcEEEEeCCHHHHHHHHHHHHHCC--CCEEEecC---CCCHHHHHHHHHHHHcC
Confidence 3455777777766542 45799999999999999999999998 89999999 99999999999999999
Q ss_pred CccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
+++|||||+++++|||+|+|++||+||+|+|..+|+||+||+||.| .|.+++++..
T Consensus 286 ~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~ 342 (523)
T 1oyw_A 286 DLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDP 342 (523)
T ss_dssp SCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECH
T ss_pred CCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCH
Confidence 9999999999999999999999999999999999999999999997 5666666654
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.87 E-value=1.8e-22 Score=207.84 Aligned_cols=136 Identities=34% Similarity=0.574 Sum_probs=100.2
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEec-----cCCCCCHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVG-----QSSGVTQQEQKEIM 168 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg-----~~~~~~~~~R~~~l 168 (395)
.++|+..|.++|..++.. ..+.++||||+++.+++.|++.|...+ ..+.+..+|| +|++|++.+|..++
T Consensus 369 ~~~k~~~l~~~l~~~~~~----~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~ 444 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHL----KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVL 444 (555)
T ss_dssp CCHHHHHHHHHHHHHHHH----CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-------------------
T ss_pred CCHHHHHHHHHHHHHhcc----CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHH
Confidence 478999999999988765 557899999999999999999998764 1245555554 22389999999999
Q ss_pred HHHhc-CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhH
Q psy4150 169 KKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHN 236 (395)
Q Consensus 169 ~~Fk~-g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~ 236 (395)
++|++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|| ||...|.+++++++++....
T Consensus 445 ~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 445 EAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRARDSKCFLLTSSADVIEK 512 (555)
T ss_dssp -------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTTTSCEEEEEESCHHHHHH
T ss_pred HHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcCCCceEEEEEcCCCHHHH
Confidence 99999 999999999999999999999999999999999999999999 99988999988877655443
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.87 E-value=7e-22 Score=197.89 Aligned_cols=173 Identities=19% Similarity=0.228 Sum_probs=128.6
Q ss_pred HHHHh-cchHHH-HHHHHhC-------------CCcchhhhccc-cCccccccccccCChhHHHHHH-hhccc-cccccc
Q psy4150 28 DFHVT-HSLASA-LENLVTY-------------GLRSFYNNLVE-VSKEDGSCPILGKDNDLQNLLQ-QLKPK-LDINIM 89 (395)
Q Consensus 28 d~~~~-~~l~~~-~~~L~~~-------------g~r~~~~fsat-l~~~~~~~~~l~~~~~~~~~v~-~~~~~-~~~~~~ 89 (395)
|.++. +||... +..+... ...+.+.+||| .+.... . ..+..... ..... .....+
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~i 231 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR---P----LLFRDLLNFTVGRLVSVARNI 231 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST---T----HHHHHHHSCCSSCCCCCCCSE
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH---H----HHHHHhhccCcCccccccccc
Confidence 77777 888776 5555542 45788999999 454431 0 00111111 01111 111113
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCcee-EEeccCCCCCHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKAS-MFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~-~lhg~~~~~~~~~R~~~l 168 (395)
.+.+ ...+|...|.++|... +.++||||+++..|+.+++.|...| +.+. .+|| . +|. +
T Consensus 232 ~~~~-~~~~~~~~l~~~l~~~---------~~~~lVF~~~~~~~~~l~~~L~~~~--~~~~~~~h~---~----~r~--~ 290 (414)
T 3oiy_A 232 THVR-ISSRSKEKLVELLEIF---------RDGILIFAQTEEEGKELYEYLKRFK--FNVGETWSE---F----EKN--F 290 (414)
T ss_dssp EEEE-ESSCCHHHHHHHHHHH---------CSSEEEEESSHHHHHHHHHHHHHTT--CCEEESSSC---H----HHH--H
T ss_pred hhee-eccCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHHcC--CceehhhcC---c----chH--H
Confidence 3333 3347888888888772 3799999999999999999999998 8887 8888 3 344 9
Q ss_pred HHHhcCCccEEEE----cCccccCCCCCC-CCEEEEcCCC--CChhhHhhhcccccccc-----CceEEEEE
Q psy4150 169 KKFRAGEFNTLIA----TSVGEEGLDIGE-IDLVICFDAQ--KSPIKMVQRLGRTGRKR-----NGRCVILL 228 (395)
Q Consensus 169 ~~Fk~g~~~vLVa----T~v~~~GlDip~-v~~VI~~d~p--~s~~~yiQr~GRagR~~-----~g~~i~l~ 228 (395)
+.|++|+++|||| |+++++|||+|+ |++||+||+| .++.+|+||+|||||.| .|.+++++
T Consensus 291 ~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 291 EDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp HHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred HHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 9999999999999 999999999999 9999999999 99999999999999986 56677776
No 29
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=212.84 Aligned_cols=129 Identities=35% Similarity=0.523 Sum_probs=105.5
Q ss_pred cccHHHHHHHHHHHHHHhhhccCC-CccEEEEcCcHHHHHHHHHHHccc------CCCCceeEEeccCCC--------CC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGE-TTKVIIFANYRVVVAEIFDVLKPL------EPMVKASMFVGQSSG--------VT 160 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~-~~r~iVF~~t~~~ae~l~~~L~~~------~~~~~~~~lhg~~~~--------~~ 160 (395)
.++|+..|.++|..++.. .+ +.++||||+++.+++.|++.|... | +++..+|| + |+
T Consensus 379 ~~~k~~~L~~~L~~~~~~----~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g--~~~~~lhg---~~~~~~~~~~~ 449 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTR----TEESARGIIFTKTRQSAYALSQWITENEKFAEVG--VKAHHLIG---AGHSSEFKPMT 449 (699)
T ss_dssp ---CSSCSHHHHHHHHHH----SSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-------CEECCC---SCCCTTCCCCC
T ss_pred CCHHHHHHHHHHHHHHhc----CCCCCcEEEEECcHHHHHHHHHHHHhCccccccC--cceEEEEC---CCCccCCCCCC
Confidence 457888888888887664 34 689999999999999999999987 6 89999999 6 99
Q ss_pred HHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchh
Q psy4150 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREA 234 (395)
Q Consensus 161 ~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~ 234 (395)
+.+|.++++.|++|+++|||||+++++|||+|+|++||+||+|+|+.+|+||+||+||.| +.++++...+...
T Consensus 450 ~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g-~~~~l~~~~~~~~ 522 (699)
T 4gl2_A 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE-STYVLVAHSGSGV 522 (699)
T ss_dssp HHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS-CEEEEEEESSSCS
T ss_pred HHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC-ceEEEEEeCCchH
Confidence 999999999999999999999999999999999999999999999999999999976655 5555555544433
No 30
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.87 E-value=1.9e-21 Score=185.53 Aligned_cols=149 Identities=20% Similarity=0.295 Sum_probs=116.4
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc-CCCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL-EPMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~-~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
...++|+..|.++|..+... +.++||||+++.+++.|...|... | +.+..+|| ++++.+|..+++.|+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~------~~kvlIFs~~~~~~~~l~~~L~~~~g--~~~~~l~G---~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDE------GDKIAIFTQFVDMGKIIRNIIEKELN--TEVPFLYG---ELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHHC--SCCCEECT---TSCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhC------CCeEEEEeccHHHHHHHHHHHHHhcC--CcEEEEEC---CCCHHHHHHHHHHhc
Confidence 44678999999999887543 689999999999999999999885 7 88999999 999999999999999
Q ss_pred cC-Ccc-EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC---ceEEEEEeCCchhhHHHHHHHHhHHH
Q psy4150 173 AG-EFN-TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN---GRCVILLTQGREAHNFQTSMQTCKSY 247 (395)
Q Consensus 173 ~g-~~~-vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~~~~~e~~~~~~~~~~~~~~ 247 (395)
+| .++ +|++|+++++|||++.+++||+||+|||+..|+||+||++|.|+ ..++.+++.++-++.+...+......
T Consensus 161 ~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l 240 (271)
T 1z5z_A 161 NNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 240 (271)
T ss_dssp HCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHH
T ss_pred CCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHH
Confidence 99 777 78999999999999999999999999999999999999999973 34567888888777766655444444
Q ss_pred HHHHHc
Q psy4150 248 VEKIIN 253 (395)
Q Consensus 248 i~~~i~ 253 (395)
.+..++
T Consensus 241 ~~~~~~ 246 (271)
T 1z5z_A 241 FKDIIS 246 (271)
T ss_dssp HTTGGG
T ss_pred HHHHHc
Confidence 444443
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.86 E-value=6.5e-22 Score=214.76 Aligned_cols=136 Identities=28% Similarity=0.524 Sum_probs=86.1
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEecc-----CCCCCHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQ-----SSGVTQQEQKEIM 168 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~-----~~~~~~~~R~~~l 168 (395)
.++|+..|.++|..++.. ..+.++||||+++.+++.|+++|.... +.+++..++|+ |++|++.+|..++
T Consensus 611 ~~~K~~~L~~lL~~~~~~----~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l 686 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRY----NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 686 (797)
T ss_dssp CCHHHHHHHHHHHHHHHH----CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC---------------------
T ss_pred CChHHHHHHHHHHHHhcc----CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHH
Confidence 578999999999987765 557899999999999999999998741 12445555442 2389999999999
Q ss_pred HHHhc-CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhH
Q psy4150 169 KKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHN 236 (395)
Q Consensus 169 ~~Fk~-g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~ 236 (395)
++|++ |+++|||||+++++|||+|+|++||+||+|+|+..|+||+|| ||.+.|.++++++.++....
T Consensus 687 ~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 687 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVEN 754 (797)
T ss_dssp -------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC--------CCCEEEEECCHHHHHH
T ss_pred HHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCceEEEEEeCCcHHHH
Confidence 99999 999999999999999999999999999999999999999999 99999999999987766554
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=9.6e-22 Score=189.80 Aligned_cols=182 Identities=20% Similarity=0.304 Sum_probs=131.8
Q ss_pred HHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeeeccccHHH
Q psy4150 25 IQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHLKFI 101 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~K~~ 101 (395)
.|++.+...++...+..+... ...+...++||++.... ....++.++... ..........+.+........
T Consensus 136 DEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 209 (337)
T 2z0m_A 136 DEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEI------EACIGLANVEHKFVHVKDDWR 209 (337)
T ss_dssp ESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEE------ECSGGGGGEEEEEEECSSSSH
T ss_pred EChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceee------ecccccCCceEEEEEeChHHH
Confidence 388888888887776665543 34556678999876541 111122211110 001111112233333333333
Q ss_pred HHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 102 RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 102 ~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
.....+.. ..+.++||||++++.++.+++.|. .+..+|| ++++.+|.+++++|++|+++||||
T Consensus 210 ~~~~~~~~--------~~~~~~lvf~~~~~~~~~l~~~l~------~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~ 272 (337)
T 2z0m_A 210 SKVQALRE--------NKDKGVIVFVRTRNRVAKLVRLFD------NAIELRG---DLPQSVRNRNIDAFREGEYDMLIT 272 (337)
T ss_dssp HHHHHHHT--------CCCSSEEEECSCHHHHHHHHTTCT------TEEEECT---TSCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHh--------CCCCcEEEEEcCHHHHHHHHHHhh------hhhhhcC---CCCHHHHHHHHHHHHcCCCcEEEE
Confidence 33333322 457899999999999999999885 4678899 999999999999999999999999
Q ss_pred cCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEe
Q psy4150 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLT 229 (395)
Q Consensus 182 T~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~ 229 (395)
|+++++|+|+|++++||+||+|+++.+|+||+||+||.| .|.+++++.
T Consensus 273 T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 273 TDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp CHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 999999999999999999999999999999999999997 677777776
No 33
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.86 E-value=1.1e-21 Score=206.39 Aligned_cols=107 Identities=21% Similarity=0.338 Sum_probs=101.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
.+.++||||+|++.++.+++.|...| +.+..+|| +|++.+|..+++.|+.|+++|||||+++++|||+|+|++||
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g--~~~~~~h~---~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI 340 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLG--IHAGAYHA---NLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI 340 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCC--CCEEEecC---CCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE
Confidence 46899999999999999999999998 99999999 99999999999999999999999999999999999999999
Q ss_pred EcCCCCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 199 CFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 199 ~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
+||+|+|..+|+||+|||||.| .|.+++++..
T Consensus 341 ~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~ 373 (591)
T 2v1x_A 341 HHSMSKSMENYYQESGRAGRDDMKADCILYYGF 373 (591)
T ss_dssp ESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECH
T ss_pred EeCCCCCHHHHHHHhccCCcCCCCceEEEEECh
Confidence 9999999999999999999997 6667766654
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.86 E-value=7.1e-22 Score=217.79 Aligned_cols=151 Identities=26% Similarity=0.475 Sum_probs=92.9
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEecc-----CCCCCHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQ-----SSGVTQQEQKEIM 168 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~-----~~~~~~~~R~~~l 168 (395)
.++|+..|.++|.+++.. ..+.++||||+++.+++.|+++|.... +.+++.+++|. |++|++.+|.+++
T Consensus 611 ~~~K~~~L~~lL~~~~~~----~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il 686 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRY----NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVL 686 (936)
T ss_dssp CCHHHHHHHHHHHHTTTS----CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------
T ss_pred CCHHHHHHHHHHHHHhcc----CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHH
Confidence 578999999999886643 457899999999999999999998761 12566666553 3489999999999
Q ss_pred HHHhc-CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCchhhHHHHHHHHhHHH
Q psy4150 169 KKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSY 247 (395)
Q Consensus 169 ~~Fk~-g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~~~~~~~~~~~~~~ 247 (395)
++|+. |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|| ||.+.|.++++++.++.+..+. ........
T Consensus 687 ~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~ 764 (936)
T 4a2w_A 687 DAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVVENEK-CNRYKEEM 764 (936)
T ss_dssp -------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC--------CCCEEEEESCHHHHHHHH-HHHHHHHH
T ss_pred HHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999 9999999999988876655433 22233334
Q ss_pred HHHHH
Q psy4150 248 VEKII 252 (395)
Q Consensus 248 i~~~i 252 (395)
+.+.+
T Consensus 765 ~~~~i 769 (936)
T 4a2w_A 765 MNKAV 769 (936)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.85 E-value=1.4e-21 Score=208.23 Aligned_cols=133 Identities=34% Similarity=0.569 Sum_probs=83.1
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEecc-----CCCCCHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQ-----SSGVTQQEQKEIM 168 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~-----~~~~~~~~R~~~l 168 (395)
.++|+..|.++|..++.. ..+.++||||+++..++.|++.|...+ +.+++..+||+ |++|++.+|.+++
T Consensus 378 ~~~k~~~L~~ll~~~~~~----~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHL----NPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp CCHHHHHHHHHHHHHHTT----CTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC----------------------
T ss_pred CCHHHHHHHHHHHHHhcc----CCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHH
Confidence 567999999999887643 456899999999999999999998875 23678888662 3489999999999
Q ss_pred HHHhc-CCccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCceEEEEEeCCch
Q psy4150 169 KKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGRE 233 (395)
Q Consensus 169 ~~Fk~-g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e 233 (395)
++|++ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|| ||.+.|.++++++.++.
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC----------CCCEEEEEESCHHH
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 99998 999999999999999999999999999999999999999999 99988888877765443
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.84 E-value=2.6e-23 Score=205.37 Aligned_cols=190 Identities=22% Similarity=0.310 Sum_probs=28.1
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee---ccccH
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA---WSHLK 99 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~K 99 (395)
|++.+...++...+..+... ...+.+.++||++.... ....++.++...... ........+.+.+. ....|
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK---KDELTLEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEEC---C---------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEec---CccccCCCceEEEEEcCchhhH
Confidence 88888888887776665543 34678889999876431 111111111100000 00000000111111 11225
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...+.+++... ...++||||+++..++.+++.|...+ +.+..+|| ++++.+|..+++.|++|+.+||
T Consensus 247 ~~~l~~~~~~~--------~~~~~lVf~~~~~~~~~l~~~L~~~~--~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vl 313 (394)
T 1fuu_A 247 YECLTDLYDSI--------SVTQAVIFCNTRRKVEELTTKLRNDK--FTVSAIYS---DLPQQERDTIMKEFRSGSSRIL 313 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcC--------CCCcEEEEECCHHHHHHHHHHHHHcC--CeEEEeeC---CCCHHHHHHHHHHHHCCCCcEE
Confidence 55555555432 34799999999999999999999988 89999999 9999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCC
Q psy4150 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQG 231 (395)
Q Consensus 180 VaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~ 231 (395)
|||+++++|+|+|++++||+||+|+++.+|+||+||+||.| .|.+++++++.
T Consensus 314 v~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 366 (394)
T 1fuu_A 314 ISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE 366 (394)
T ss_dssp -----------------------------------------------------
T ss_pred EECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchh
Confidence 99999999999999999999999999999999999999996 67777777654
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.84 E-value=3.2e-22 Score=206.65 Aligned_cols=194 Identities=19% Similarity=0.262 Sum_probs=119.1
Q ss_pred HHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCcccc-ccccccCChhHHHHHHhhcccccccccceeee---cccc
Q psy4150 26 QRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKEDG-SCPILGKDNDLQNLLQQLKPKLDINIMSSEYA---WSHL 98 (395)
Q Consensus 26 ead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~~-~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~ 98 (395)
|++.+.. .++......+... ...+.+.+|||++.... ....+..++....+. ........+.+.+. ....
T Consensus 267 EaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~ 343 (508)
T 3fho_A 267 EADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLK---TEELSVEGIKQLYMDCQSEEH 343 (508)
T ss_dssp CHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCC---CCC----CCCCEEEEC--CHH
T ss_pred chhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEec---cccCCcccceEEEEECCchHH
Confidence 7776665 5666665555543 34577889999886441 111111111111000 00000011122222 2334
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
|...+..++.. ....++||||+++..++.++..|.+.+ +.+..+|| ++++.+|..+++.|++|+++|
T Consensus 344 k~~~l~~ll~~--------~~~~~~LVF~~s~~~a~~l~~~L~~~~--~~v~~~hg---~~~~~~R~~il~~f~~g~~~V 410 (508)
T 3fho_A 344 KYNVLVELYGL--------LTIGQSIIFCKKKDTAEEIARRMTADG--HTVACLTG---NLEGAQRDAIMDSFRVGTSKV 410 (508)
T ss_dssp HHHHHHHHHC-----------CCCEEEBCSSTTTTTHHHHHHTTTT--CCCCEEC--------CTTGGGTHHHHSSSCCC
T ss_pred HHHHHHHHHHh--------cCCCcEEEEECCHHHHHHHHHHHHhCC--CcEEEEeC---CCCHHHHHHHHHHHHCCCCeE
Confidence 66656555543 235899999999999999999999988 89999999 999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCC------CChhhHhhhcccccccc-CceEEEEEeCCchhh
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQ------KSPIKMVQRLGRTGRKR-NGRCVILLTQGREAH 235 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p------~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~~ 235 (395)
||||+++++|+|+|+|++||+||+| .++..|+||+||+||.| .|.+++++.+.++..
T Consensus 411 LVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~ 474 (508)
T 3fho_A 411 LVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWE 474 (508)
T ss_dssp CEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSS
T ss_pred EEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHH
Confidence 9999999999999999999999999 78999999999999997 788888887665543
No 38
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.82 E-value=3.3e-20 Score=198.34 Aligned_cols=129 Identities=21% Similarity=0.158 Sum_probs=111.7
Q ss_pred eeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 92 EYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 92 ~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.|.....|+..|.++|...... +.++||||+|+..++.|+..|...| +++..||| ++++.+|..+.+.|
T Consensus 410 v~~~~~~K~~al~~~i~~~~~~------~~pvLVft~s~~~se~Ls~~L~~~g--i~~~vLhg---~~~~rEr~ii~~ag 478 (844)
T 1tf5_A 410 IYRTMEGKFKAVAEDVAQRYMT------GQPVLVGTVAVETSELISKLLKNKG--IPHQVLNA---KNHEREAQIIEEAG 478 (844)
T ss_dssp EESSHHHHHHHHHHHHHHHHHH------TCCEEEEESCHHHHHHHHHHHHTTT--CCCEEECS---SCHHHHHHHHTTTT
T ss_pred EEeCHHHHHHHHHHHHHHHHhc------CCcEEEEECCHHHHHHHHHHHHHCC--CCEEEeeC---CccHHHHHHHHHcC
Confidence 3445567898888888764332 4689999999999999999999999 99999999 88888887676666
Q ss_pred hcCCccEEEEcCccccCCCCC--------CCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 172 RAGEFNTLIATSVGEEGLDIG--------EIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip--------~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
+.| .||||||+++||+||+ ++.+||+||.|.|...|+||+|||||.| .|.+++|++..+.
T Consensus 479 ~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 479 QKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp STT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 665 6999999999999999 7889999999999999999999999998 7888888887654
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.81 E-value=1.5e-20 Score=198.36 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=123.2
Q ss_pred HHHHHHhcchHHHHHHHHhC---CCcchhhhccccCccccccccccC-ChhHHHHHHhhcccccccccceeeeccccHHH
Q psy4150 26 QRDFHVTHSLASALENLVTY---GLRSFYNNLVEVSKEDGSCPILGK-DNDLQNLLQQLKPKLDINIMSSEYAWSHLKFI 101 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~---g~r~~~~fsatl~~~~~~~~~l~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~K~~ 101 (395)
|+|.+ ++++...+..|... ..++++.||||++.... .+.. ++... ... ..+ ...++.
T Consensus 285 Eah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~---~~~~~~~~~~----------~v~---~~~--~~~~~~ 345 (618)
T 2whx_A 285 EAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD---PFPQSNSPIE----------DIE---REI--PERSWN 345 (618)
T ss_dssp STTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC---SSCCCSSCEE----------EEE---CCC--CSSCCS
T ss_pred CCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh---hhhccCCcee----------eec---ccC--CHHHHH
Confidence 66665 66666666655543 45789999999987652 2221 11100 000 000 111222
Q ss_pred HHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEE
Q psy4150 102 RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181 (395)
Q Consensus 102 ~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVa 181 (395)
.+...|.+ ...++||||+|+..|+.+++.|.+.+ +.+..+|| + +|.+++++|++|+++||||
T Consensus 346 ~ll~~l~~---------~~~~~LVF~~s~~~a~~l~~~L~~~g--~~v~~lhg---~----~R~~~l~~F~~g~~~VLVa 407 (618)
T 2whx_A 346 TGFDWITD---------YQGKTVWFVPSIKAGNDIANCLRKSG--KRVIQLSR---K----TFDTEYPKTKLTDWDFVVT 407 (618)
T ss_dssp SSCHHHHH---------CCSCEEEECSSHHHHHHHHHHHHHTT--CCEEEECT---T----THHHHTTHHHHSCCSEEEE
T ss_pred HHHHHHHh---------CCCCEEEEECChhHHHHHHHHHHHcC--CcEEEECh---H----HHHHHHHhhcCCCcEEEEE
Confidence 23333322 14799999999999999999999998 89999998 4 6888999999999999999
Q ss_pred cCccccCCCCCCCCEE--------------------EEcCCCCChhhHhhhcccccccc--CceEEEEEe
Q psy4150 182 TSVGEEGLDIGEIDLV--------------------ICFDAQKSPIKMVQRLGRTGRKR--NGRCVILLT 229 (395)
Q Consensus 182 T~v~~~GlDip~v~~V--------------------I~~d~p~s~~~yiQr~GRagR~~--~g~~i~l~~ 229 (395)
||++++|||+| |++| |+||.|.+..+|+||+|||||.| .|.+++|++
T Consensus 408 Tdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 408 TDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp CGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred CcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 99999999998 9988 78888999999999999999995 788888876
No 40
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.80 E-value=2.9e-19 Score=187.77 Aligned_cols=130 Identities=18% Similarity=0.205 Sum_probs=110.4
Q ss_pred eeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 92 EYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 92 ~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.|.....|+..+.+.+...... +.++||||+|+..++.|+..|.+.| +++..+|| +..+.++..+...|
T Consensus 452 vy~t~~eK~~al~~~I~~~~~~------gqpVLVFt~S~e~sE~Ls~~L~~~G--i~~~vLhg---kq~~rE~~ii~~ag 520 (822)
T 3jux_A 452 VFRTQKEKYEKIVEEIEKRYKK------GQPVLVGTTSIEKSELLSSMLKKKG--IPHQVLNA---KYHEKEAEIVAKAG 520 (822)
T ss_dssp EESSHHHHHHHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHTTT--CCCEEECS---CHHHHHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHHHHhhC------CCCEEEEECCHHHHHHHHHHHHHCC--CCEEEeeC---CchHHHHHHHHhCC
Confidence 4555667999998888775433 5789999999999999999999999 99999999 76566665555666
Q ss_pred hcCCccEEEEcCccccCCCCC--------CCCEEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCchh
Q psy4150 172 RAGEFNTLIATSVGEEGLDIG--------EIDLVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGREA 234 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip--------~v~~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e~ 234 (395)
+.| .|+||||+++||+||+ ++.+||+|+.|.+...|+||+|||||.| +|.+++|++..++.
T Consensus 521 ~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 521 QKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp STT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred CCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 655 6999999999999998 6679999999999999999999999998 78888888876643
No 41
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.79 E-value=3.2e-20 Score=189.46 Aligned_cols=102 Identities=22% Similarity=0.212 Sum_probs=92.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
.+++||||+++..++.+++.|...+ +.+..+|| . +|..+++.|++|+++|||||+++++|||+|+ ++||+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g--~~v~~lh~---~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~ 259 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAG--KKVIQLNR---K----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVID 259 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEEEST---T----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcC--CcEEecCH---H----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEE
Confidence 5799999999999999999999998 89999998 4 5778999999999999999999999999999 99999
Q ss_pred --------------------cCCCCChhhHhhhcccccccc--CceEEEEEeCC
Q psy4150 200 --------------------FDAQKSPIKMVQRLGRTGRKR--NGRCVILLTQG 231 (395)
Q Consensus 200 --------------------~d~p~s~~~yiQr~GRagR~~--~g~~i~l~~~~ 231 (395)
||.|.+..+|+||+|||||.| .|.+++|+...
T Consensus 260 ~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 260 CRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 789999999999999999996 78888888775
No 42
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.79 E-value=7.1e-20 Score=204.34 Aligned_cols=149 Identities=17% Similarity=0.231 Sum_probs=109.0
Q ss_pred HHHHh-cchHHH-HHHHHhC-------------CCcchhhhccc-cCccccccccccCChhHHHHHH-hhc-cccccccc
Q psy4150 28 DFHVT-HSLASA-LENLVTY-------------GLRSFYNNLVE-VSKEDGSCPILGKDNDLQNLLQ-QLK-PKLDINIM 89 (395)
Q Consensus 28 d~~~~-~~l~~~-~~~L~~~-------------g~r~~~~fsat-l~~~~~~~~~l~~~~~~~~~v~-~~~-~~~~~~~~ 89 (395)
|.+++ +||... +..+..+ ...+++.|||| .+..... .+ +...+. ... .......+
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~--~~-----~~~~l~i~v~~~~~~~~~i 288 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP--LL-----FRDLLNFTVGRLVSVARNI 288 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT--HH-----HHHHTCCCCCBCCCCCCCE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH--HH-----hhcceeEEeccCCCCcCCc
Confidence 88888 998876 5555542 45789999999 4554410 00 111110 000 01111113
Q ss_pred ceeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCcee-EEeccCCCCCHHHHHHHH
Q psy4150 90 SSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKAS-MFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 90 ~~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~-~lhg~~~~~~~~~R~~~l 168 (395)
.+.+.. .+|...|.++|... +.++||||+++..++.++..|...| +.+. .+|| . |.+ +
T Consensus 289 ~~~~~~-~~k~~~L~~ll~~~---------~~~~LVF~~s~~~a~~l~~~L~~~g--~~~~~~lhg---~-----rr~-l 347 (1104)
T 4ddu_A 289 THVRIS-SRSKEKLVELLEIF---------RDGILIFAQTEEEGKELYEYLKRFK--FNVGETWSE---F-----EKN-F 347 (1104)
T ss_dssp EEEEES-CCCHHHHHHHHHHH---------CSSEEEEESSSHHHHHHHHHHHHTT--CCEEESSSS---H-----HHH-H
T ss_pred eeEEEe-cCHHHHHHHHHHhc---------CCCEEEEECcHHHHHHHHHHHHhCC--CCeeeEecC---c-----HHH-H
Confidence 334433 37888888888772 3899999999999999999999998 8887 8888 2 455 9
Q ss_pred HHHhcCCccEEEE----cCccccCCCCCC-CCEEEEcCCCC
Q psy4150 169 KKFRAGEFNTLIA----TSVGEEGLDIGE-IDLVICFDAQK 204 (395)
Q Consensus 169 ~~Fk~g~~~vLVa----T~v~~~GlDip~-v~~VI~~d~p~ 204 (395)
++|++|+++|||| |+++++|||+|+ |++||+||+|.
T Consensus 348 ~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 348 EDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 9999999999999 999999999999 99999999998
No 43
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.79 E-value=9e-20 Score=185.23 Aligned_cols=99 Identities=15% Similarity=0.154 Sum_probs=84.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
+.++||||+++..++.+++.|...+ +++..+|| + +|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~--~~v~~lhg---~----~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAG--KSVVVLNR---K----TFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTT--CCEEECCS---S----SCC--------CCCSEEEESSSTTCCTTCC-CSEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC--CCEEEecc---h----hHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEe
Confidence 5799999999999999999999988 89999998 3 478899999999999999999999999999 999996
Q ss_pred -------------------cCCCCChhhHhhhccccccc-c-CceEEEEE
Q psy4150 200 -------------------FDAQKSPIKMVQRLGRTGRK-R-NGRCVILL 228 (395)
Q Consensus 200 -------------------~d~p~s~~~yiQr~GRagR~-~-~g~~i~l~ 228 (395)
|+.|.+..+|+||+||+||. + .|.+++++
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 89999999999999999997 4 78888886
No 44
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.78 E-value=5.7e-19 Score=195.19 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=113.5
Q ss_pred eeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcc-cCCCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 93 YAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKP-LEPMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 93 ~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~-~~~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
+...++|...|.+++.. ..+.++||||+++..++.|+..|.. .| +++..+|| +|++.+|..++++|
T Consensus 484 ~~~~~~K~~~L~~ll~~--------~~~~k~iVF~~~~~~~~~l~~~L~~~~g--~~~~~lhG---~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTS--------HRSQKVLVICAKAATALQLEQVLREREG--IRAAVFHE---GMSIIERDRAAAWF 550 (968)
T ss_dssp TTTTSHHHHHHHHHHHH--------TSSSCCCEECSSTHHHHHHHHHHHTTTC--CCEEEECT---TSCTTHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHh--------CCCCCEEEEeCcHHHHHHHHHHHHHHcC--CcEEEEeC---CCCHHHHHHHHHHH
Confidence 34567799999998876 3468999999999999999999985 57 89999999 99999999999999
Q ss_pred hcCC--ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC-ce--EEEEEeCCchh
Q psy4150 172 RAGE--FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-GR--CVILLTQGREA 234 (395)
Q Consensus 172 k~g~--~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~-g~--~i~l~~~~~e~ 234 (395)
++|+ ++|||||+++++|||+|.+++||+||+|+++..|+||+||+||.|. |. ++.++..++.+
T Consensus 551 ~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~e 618 (968)
T 3dmq_A 551 AEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQ 618 (968)
T ss_dssp HSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHH
T ss_pred hCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHH
Confidence 9998 9999999999999999999999999999999999999999999974 33 34455555544
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.78 E-value=6.8e-19 Score=187.91 Aligned_cols=129 Identities=17% Similarity=0.098 Sum_probs=113.1
Q ss_pred eeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 92 EYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 92 ~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.|.....|+..|.+++..... .+.++||||+|+..++.|+..|.+.| +++.+||| ++.+.++..+.+.|
T Consensus 419 v~~~~~~K~~al~~~i~~~~~------~gqpvLVft~sie~se~Ls~~L~~~g--i~~~vLna---k~~~rEa~iia~ag 487 (853)
T 2fsf_A 419 VYMTEAEKIQAIIEDIKERTA------KGQPVLVGTISIEKSELVSNELTKAG--IKHNVLNA---KFHANEAAIVAQAG 487 (853)
T ss_dssp EESSHHHHHHHHHHHHHHHHT------TTCCEEEEESSHHHHHHHHHHHHHTT--CCCEECCT---TCHHHHHHHHHTTT
T ss_pred EEeCHHHHHHHHHHHHHHHhc------CCCCEEEEECcHHHHHHHHHHHHHCC--CCEEEecC---ChhHHHHHHHHhcC
Confidence 455567799998888866432 35789999999999999999999999 99999999 88899998888999
Q ss_pred hcCCccEEEEcCccccCCCCCCC-------------------------------------CEEEEcCCCCChhhHhhhcc
Q psy4150 172 RAGEFNTLIATSVGEEGLDIGEI-------------------------------------DLVICFDAQKSPIKMVQRLG 214 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip~v-------------------------------------~~VI~~d~p~s~~~yiQr~G 214 (395)
+.| .|+||||+++||+||+.. .+||+|+.|.|...|+||+|
T Consensus 488 r~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~G 565 (853)
T 2fsf_A 488 YPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRG 565 (853)
T ss_dssp STT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHT
T ss_pred CCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhcc
Confidence 988 699999999999999973 69999999999999999999
Q ss_pred cccccc-CceEEEEEeCCch
Q psy4150 215 RTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 215 RagR~~-~g~~i~l~~~~~e 233 (395)
||||.| +|.+++|++..++
T Consensus 566 RTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 566 RSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp TSSGGGCCEEEEEEEETTSG
T ss_pred ccccCCCCeeEEEEecccHH
Confidence 999998 6888888876654
No 46
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.77 E-value=5e-19 Score=197.63 Aligned_cols=111 Identities=21% Similarity=0.266 Sum_probs=94.8
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc---------------------------------------eeEEeccCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK---------------------------------------ASMFVGQSSGV 159 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~---------------------------------------~~~lhg~~~~~ 159 (395)
...++||||+++..|+.++..|...+ +. +.++|| +|
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~--~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg---~l 514 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLD--FNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHS---GL 514 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHH--HHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECS---CS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecC---CC
Confidence 46799999999999999999997643 22 677888 99
Q ss_pred CHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC--------ChhhHhhhcccccccc---CceEEEEE
Q psy4150 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK--------SPIKMVQRLGRTGRKR---NGRCVILL 228 (395)
Q Consensus 160 ~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~--------s~~~yiQr~GRagR~~---~g~~i~l~ 228 (395)
++.+|..+++.|+.|.++|||||+++++|||+|++++||+++.|+ |+.+|+||+|||||.| .|.+++++
T Consensus 515 ~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~ 594 (1108)
T 3l9o_A 515 LPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 594 (1108)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEE
T ss_pred CHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Confidence 999999999999999999999999999999999999999887644 6677999999999997 67788777
Q ss_pred eCCchh
Q psy4150 229 TQGREA 234 (395)
Q Consensus 229 ~~~~e~ 234 (395)
.+..+.
T Consensus 595 ~~~~~~ 600 (1108)
T 3l9o_A 595 DEKMEP 600 (1108)
T ss_dssp CCCCCH
T ss_pred cCCcCH
Confidence 766443
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.77 E-value=3.5e-19 Score=181.39 Aligned_cols=125 Identities=30% Similarity=0.478 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
...|...|.++|.. ..+.++||||+++..++.+++.|. +..+|| ++++.+|.++++.|++|+
T Consensus 333 ~~~k~~~l~~~l~~--------~~~~k~lvF~~~~~~~~~l~~~l~-------~~~~~g---~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 333 SKNKIRKLREILER--------HRKDKIIIFTRHNELVYRISKVFL-------IPAITH---RTSREEREEILEGFRTGR 394 (472)
T ss_dssp CSHHHHHHHHHHHH--------TSSSCBCCBCSCHHHHHHHHHHTT-------CCBCCS---SSCSHHHHTHHHHHHHSS
T ss_pred ChHHHHHHHHHHHh--------CCCCcEEEEECCHHHHHHHHHHhC-------cceeeC---CCCHHHHHHHHHHHhCCC
Confidence 45678888887766 236899999999999999999884 456888 999999999999999999
Q ss_pred ccEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCc--e--EEEEEeCCchhhHHH
Q psy4150 176 FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNG--R--CVILLTQGREAHNFQ 238 (395)
Q Consensus 176 ~~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g--~--~i~l~~~~~e~~~~~ 238 (395)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+| . ++.+++.++.++.+.
T Consensus 395 ~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~ 461 (472)
T 2fwr_A 395 FRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTA 461 (472)
T ss_dssp CSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-----
T ss_pred CCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHH
Confidence 99999999999999999999999999999999999999999999866 3 445677776665543
No 48
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.76 E-value=9.9e-19 Score=179.32 Aligned_cols=132 Identities=21% Similarity=0.323 Sum_probs=111.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc-CCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL-EPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~-~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
..++|+..+.++|.++.. .+.++||||+++..++.+.+.|... + +.+..+|| ++++.+|.++++.|++
T Consensus 322 ~~s~K~~~l~~~l~~~~~------~~~k~lvF~~~~~~~~~l~~~l~~~~~--~~~~~~~g---~~~~~~R~~~~~~F~~ 390 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALD------EGDKIAIFTQFVDMGKIIRNIIEKELN--TEVPFLYG---ELSKKERDDIISKFQN 390 (500)
T ss_dssp TTCHHHHHHHHHHHHHHT------TTCCEEEECSCHHHHHHHHHHHHHHHT--CCCCEEET---TSCHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHc------cCCcEEEEEehHHHHHHHHHHHHHhhC--CCeEEEEC---CCCHHHHHHHHHHhcC
Confidence 356799999999988754 3689999999999999999999875 7 88999999 9999999999999999
Q ss_pred C-Ccc-EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCc---eEEEEEeCCchhhHH
Q psy4150 174 G-EFN-TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNG---RCVILLTQGREAHNF 237 (395)
Q Consensus 174 g-~~~-vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g---~~i~l~~~~~e~~~~ 237 (395)
| .+. +||||+++++|+|++.+++||+||+|||+..|+||+||++|.|+. .++.+++.++.++.+
T Consensus 391 ~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i 459 (500)
T 1z63_A 391 NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKI 459 (500)
T ss_dssp CTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHT
T ss_pred CCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHH
Confidence 8 565 799999999999999999999999999999999999999999743 345677777655433
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=3e-18 Score=183.34 Aligned_cols=129 Identities=20% Similarity=0.191 Sum_probs=112.1
Q ss_pred eeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 92 EYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 92 ~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.|.....|+..+.+.+..... .+.++||||+|+..++.|+..|.+.| +++.+||| ++.+.++..+.+.|
T Consensus 438 v~~t~~~K~~al~~~i~~~~~------~gqpvLVft~Sie~sE~Ls~~L~~~G--i~~~vLna---k~~~rEa~iia~ag 506 (922)
T 1nkt_A 438 IYKTEEAKYIAVVDDVAERYA------KGQPVLIGTTSVERSEYLSRQFTKRR--IPHNVLNA---KYHEQEATIIAVAG 506 (922)
T ss_dssp EESCHHHHHHHHHHHHHHHHH------TTCCEEEEESCHHHHHHHHHHHHHTT--CCCEEECS---SCHHHHHHHHHTTT
T ss_pred EEeCHHHHHHHHHHHHHHHHh------cCCcEEEEECCHHHHHHHHHHHHHCC--CCEEEecC---ChhHHHHHHHHhcC
Confidence 445556788888888876433 25689999999999999999999999 99999999 88888888888888
Q ss_pred hcCCccEEEEcCccccCCCCCCC----------------------------------------------------CEEEE
Q psy4150 172 RAGEFNTLIATSVGEEGLDIGEI----------------------------------------------------DLVIC 199 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip~v----------------------------------------------------~~VI~ 199 (395)
+.| .|+||||+++||+||+.+ .+||+
T Consensus 507 r~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~ 584 (922)
T 1nkt_A 507 RRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG 584 (922)
T ss_dssp STT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE
T ss_pred CCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe
Confidence 887 699999999999999975 59999
Q ss_pred cCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 200 FDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 200 ~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
|+.|.|...|+||+|||||.| .|.+++|++..++
T Consensus 585 te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 585 TERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp CSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred ccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 999999999999999999998 6888888877654
No 50
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.75 E-value=1.6e-19 Score=201.12 Aligned_cols=88 Identities=26% Similarity=0.317 Sum_probs=73.0
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
...|...|.+++..+ +.++||||+|+..|+.+++.|... +++..+|| ++ ..++++|++|+
T Consensus 260 ~~~k~~~L~~ll~~~---------~~~~LVF~~t~~~a~~l~~~L~~~---~~v~~lhg---~~-----~~~l~~F~~G~ 319 (1054)
T 1gku_B 260 NDESISTLSSILEKL---------GTGGIIYARTGEEAEEIYESLKNK---FRIGIVTA---TK-----KGDYEKFVEGE 319 (1054)
T ss_dssp SCCCTTTTHHHHTTS---------CSCEEEEESSHHHHHHHHHTTTTS---SCEEECTT---SS-----SHHHHHHHHTS
T ss_pred chhHHHHHHHHHhhc---------CCCEEEEEcCHHHHHHHHHHHhhc---cCeeEEec---cH-----HHHHHHHHcCC
Confidence 566777777776542 478999999999999999999876 78999999 77 37899999999
Q ss_pred ccEEEE----cCccccCCCCCCC-CEEEEcCCC
Q psy4150 176 FNTLIA----TSVGEEGLDIGEI-DLVICFDAQ 203 (395)
Q Consensus 176 ~~vLVa----T~v~~~GlDip~v-~~VI~~d~p 203 (395)
++|||| |+++++|||+|+| ++||+||+|
T Consensus 320 ~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 320 IDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp CSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred CcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 999999 9999999999996 999999999
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.75 E-value=1.8e-18 Score=176.17 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=91.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
.+++||||+|+..|+.+++.|.+.+ +.+..+|| ++. ..+++.|++|+++|||||+++++|||+|+ ++||+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g--~~~~~lh~---~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSG--KRVIQLSR---KTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT--CCEEEECT---TTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcC--CeEEECCH---HHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEE
Confidence 4699999999999999999999988 89999999 653 57999999999999999999999999999 99999
Q ss_pred cC--------------------CCCChhhHhhhcccccccc--CceEEEEEeC
Q psy4150 200 FD--------------------AQKSPIKMVQRLGRTGRKR--NGRCVILLTQ 230 (395)
Q Consensus 200 ~d--------------------~p~s~~~yiQr~GRagR~~--~g~~i~l~~~ 230 (395)
|| .|.+..+|+||+|||||.| .|.++++...
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99 9999999999999999997 5677666543
No 52
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.75 E-value=3e-18 Score=189.67 Aligned_cols=122 Identities=21% Similarity=0.283 Sum_probs=98.9
Q ss_pred ccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCC------------------------------
Q psy4150 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM------------------------------ 146 (395)
Q Consensus 97 ~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~------------------------------ 146 (395)
..++..+...|.. ....++||||+|+..|+.++..|...+-.
T Consensus 321 ~~~~~~li~~l~~--------~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~ 392 (997)
T 4a4z_A 321 KKTWPEIVNYLRK--------RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQIL 392 (997)
T ss_dssp TTHHHHHHHHHHH--------TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHH
T ss_pred hhHHHHHHHHHHh--------CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHH
Confidence 3455555555544 34579999999999999999999876510
Q ss_pred -------CceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC---------ChhhHh
Q psy4150 147 -------VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK---------SPIKMV 210 (395)
Q Consensus 147 -------~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~---------s~~~yi 210 (395)
..+.++|| +|++.+|..+++.|+.|.++|||||+++++|||+|+ ..||+++.|+ |+.+|+
T Consensus 393 ~l~~~l~~gi~~~H~---gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~ 468 (997)
T 4a4z_A 393 KTRSLLERGIAVHHG---GLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFT 468 (997)
T ss_dssp HHHHHHTTTEEEECT---TSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHH
T ss_pred HHHHHhhcCeeeecC---CCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHh
Confidence 14678888 999999999999999999999999999999999999 4555555554 999999
Q ss_pred hhcccccccc---CceEEEEEeC
Q psy4150 211 QRLGRTGRKR---NGRCVILLTQ 230 (395)
Q Consensus 211 Qr~GRagR~~---~g~~i~l~~~ 230 (395)
||+|||||.| .|.+++++..
T Consensus 469 Qr~GRAGR~G~~~~G~vi~l~~~ 491 (997)
T 4a4z_A 469 QMAGRAGRRGLDSTGTVIVMAYN 491 (997)
T ss_dssp HHHGGGCCTTTCSSEEEEEECCS
T ss_pred HHhcccccCCCCcceEEEEecCC
Confidence 9999999986 6777766643
No 53
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.73 E-value=1.6e-18 Score=187.26 Aligned_cols=125 Identities=19% Similarity=0.218 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcc---------cCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKP---------LEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~---------~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
+.......+...... ...+++||||+++..++.+++.|.+ ....+.+..+|| +|++.+|..+++
T Consensus 286 ~~~~~l~~l~~~~~~----~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg---~l~~~eR~~v~~ 358 (773)
T 2xau_A 286 YLDSAIRTVLQIHAT----EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYG---SLPPHQQQRIFE 358 (773)
T ss_dssp HHHHHHHHHHHHHHH----SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECT---TCCHHHHGGGGS
T ss_pred HHHHHHHHHHHHHHh----cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCC---CCCHHHHHHHHh
Confidence 444444444443332 3468999999999999999999975 112388999999 999999999999
Q ss_pred HHh-----cCCccEEEEcCccccCCCCCCCCEEEEcCC------------------CCChhhHhhhccccccccCceEEE
Q psy4150 170 KFR-----AGEFNTLIATSVGEEGLDIGEIDLVICFDA------------------QKSPIKMVQRLGRTGRKRNGRCVI 226 (395)
Q Consensus 170 ~Fk-----~g~~~vLVaT~v~~~GlDip~v~~VI~~d~------------------p~s~~~yiQr~GRagR~~~g~~i~ 226 (395)
.|+ .|..+|||||+++++|||||+|++||++++ |.|..+|+||+|||||.+.|.++.
T Consensus 359 ~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~ 438 (773)
T 2xau_A 359 PAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFR 438 (773)
T ss_dssp CCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEE
T ss_pred hcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEE
Confidence 999 999999999999999999999999999888 889999999999999998899988
Q ss_pred EEeC
Q psy4150 227 LLTQ 230 (395)
Q Consensus 227 l~~~ 230 (395)
++++
T Consensus 439 l~~~ 442 (773)
T 2xau_A 439 LYTE 442 (773)
T ss_dssp SSCH
T ss_pred EecH
Confidence 8764
No 54
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.73 E-value=1.4e-17 Score=178.38 Aligned_cols=110 Identities=17% Similarity=0.306 Sum_probs=94.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCC----------------------------------CceeEEeccCCCCCHHHHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPM----------------------------------VKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~----------------------------------~~~~~lhg~~~~~~~~~R~ 165 (395)
++++||||++++.++.++..|.+.... ..+.++|| +|++.+|.
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~---~l~~~~r~ 328 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHA---GLSKALRD 328 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECT---TSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECC---CCCHHHHH
Confidence 589999999999999999999865321 24778888 99999999
Q ss_pred HHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE----cC-------CCCChhhHhhhcccccccc---CceEEEEEeCC
Q psy4150 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC----FD-------AQKSPIKMVQRLGRTGRKR---NGRCVILLTQG 231 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~----~d-------~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~ 231 (395)
.+++.|++|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.| .|.+++++++.
T Consensus 329 ~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 408 (715)
T 2va8_A 329 LIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDK 408 (715)
T ss_dssp HHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCG
T ss_pred HHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCc
Confidence 9999999999999999999999999999999999 99 8999999999999999997 78888887665
Q ss_pred c
Q psy4150 232 R 232 (395)
Q Consensus 232 ~ 232 (395)
+
T Consensus 409 ~ 409 (715)
T 2va8_A 409 E 409 (715)
T ss_dssp G
T ss_pred h
Confidence 4
No 55
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2e-17 Score=183.12 Aligned_cols=112 Identities=21% Similarity=0.268 Sum_probs=99.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCC-------------------------------------CceeEEeccCCCCCHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPM-------------------------------------VKASMFVGQSSGVTQQ 162 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~-------------------------------------~~~~~lhg~~~~~~~~ 162 (395)
..++||||+++..|+.++..|...+-. ..+.++|| +|++.
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hg---gl~~~ 419 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHS---GLLPI 419 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEEST---TSCHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECC---CCCHH
Confidence 468999999999999999999875410 01567788 99999
Q ss_pred HHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE----cCC----CCChhhHhhhcccccccc---CceEEEEEeCC
Q psy4150 163 EQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC----FDA----QKSPIKMVQRLGRTGRKR---NGRCVILLTQG 231 (395)
Q Consensus 163 ~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~----~d~----p~s~~~yiQr~GRagR~~---~g~~i~l~~~~ 231 (395)
+|..+++.|++|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+|||||.| .|.+++++.+.
T Consensus 420 eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 420 LKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp HHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred HHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9999999999999999999999999999999999999 999 899999999999999997 38888888766
Q ss_pred chh
Q psy4150 232 REA 234 (395)
Q Consensus 232 ~e~ 234 (395)
.+.
T Consensus 500 ~e~ 502 (1010)
T 2xgj_A 500 MEP 502 (1010)
T ss_dssp CCH
T ss_pred CCH
Confidence 443
No 56
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.72 E-value=6.4e-17 Score=171.66 Aligned_cols=136 Identities=17% Similarity=0.220 Sum_probs=117.8
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
.+.|+..|..++..... ..+.++||||+++.+++.|...|...| +.+..+|| ++++.+|.++++.|++|.
T Consensus 397 ~s~K~~~l~~ll~~~~~-----~~~~k~lIFs~~~~~~~~l~~~l~~~g--~~~~~l~G---~~~~~~R~~~i~~F~~~~ 466 (644)
T 1z3i_X 397 LSGKMLVLDYILAMTRT-----TTSDKVVLVSNYTQTLDLFEKLCRNRR--YLYVRLDG---TMSIKKRAKIVERFNNPS 466 (644)
T ss_dssp GSHHHHHHHHHHHHHHH-----HCCCEEEEEESCHHHHHHHHHHHHHHT--CCEEEECS---SCCHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHHHHHhh-----cCCCEEEEEEccHHHHHHHHHHHHHCC--CCEEEEeC---CCCHHHHHHHHHHhcCCC
Confidence 35688888887776543 246899999999999999999999998 99999999 999999999999999987
Q ss_pred cc---EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCc---eEEEEEeCCchhhHHHHHH
Q psy4150 176 FN---TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNG---RCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 176 ~~---vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g---~~i~l~~~~~e~~~~~~~~ 241 (395)
.. +||+|+++++|||++.+++||+||+|||+..|.|++||++|.|+. .++.+++.++.++.+...+
T Consensus 467 ~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~ 538 (644)
T 1z3i_X 467 SPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQ 538 (644)
T ss_dssp CCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred CCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHH
Confidence 64 899999999999999999999999999999999999999999743 4566888887766654433
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.72 E-value=1.2e-17 Score=171.57 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=102.5
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCcc
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFN 177 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~ 177 (395)
.+...+.+++..... ..+.++|||++ ...++.|++.|.+.+ .++..+|| ++++.+|.++++.|++|+++
T Consensus 331 ~~~~~l~~~l~~~~~-----~~~~~~ivf~~-~~~~~~l~~~L~~~~--~~v~~~~g---~~~~~~r~~i~~~f~~g~~~ 399 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQ-----KDENAFVMFKH-VSHGKAIFDLIKNEY--DKVYYVSG---EVDTETRNIMKTLAENGKGI 399 (510)
T ss_dssp HHHHHHHHHHHHHHT-----TTCEEEEEESS-HHHHHHHHHHHHTTC--SSEEEESS---STTHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHHh-----cCCCeEEEEec-HHHHHHHHHHHHHcC--CCeEEEEC---CCCHHHHHHHHHHHhCCCCC
Confidence 455556666655443 23566777777 888889999999988 68999999 99999999999999999999
Q ss_pred EEEEc-CccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccCce-EEEEE
Q psy4150 178 TLIAT-SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGR-CVILL 228 (395)
Q Consensus 178 vLVaT-~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~g~-~i~l~ 228 (395)
||||| +++++|+|+|+|++||++++|+++..|+||+||+||.|.++ .++++
T Consensus 400 vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 400 IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEE
Confidence 99999 99999999999999999999999999999999999998654 44333
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.71 E-value=1.3e-17 Score=177.53 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=92.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
+.++||||+++..++.+++.|...+ +++..+|| + +|..+++.|++|+++|||||+++++|||+| +++||+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~g--~~v~~lHg---~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~ 479 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRAG--KRVIQLNR---K----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVID 479 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTT--CCEEEECS---S----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC--CeEEEeCh---H----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEE
Confidence 5899999999999999999999988 99999999 4 688999999999999999999999999999 999998
Q ss_pred --------------------cCCCCChhhHhhhccccccc-c-CceEEEEEe
Q psy4150 200 --------------------FDAQKSPIKMVQRLGRTGRK-R-NGRCVILLT 229 (395)
Q Consensus 200 --------------------~d~p~s~~~yiQr~GRagR~-~-~g~~i~l~~ 229 (395)
||.|.+..+|+||+||+||. + .|.+++|+.
T Consensus 480 ~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 480 CRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp CCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred CCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 67899999999999999999 4 677777763
No 59
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.6e-17 Score=176.79 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=119.7
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
.+.|+..|.++|..+.. .+.++||||+++.+++.|.++|...| +.+..+|| +++..+|..+++.|+.|.
T Consensus 554 ~s~K~~~L~~lL~~~~~------~g~kvLIFsq~~~~ld~L~~~L~~~g--~~~~~i~G---~~~~~eR~~~i~~F~~~~ 622 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKK------DGHRVLIFSQMVRMLDILGDYLSIKG--INFQRLDG---TVPSAQRRISIDHFNSPD 622 (800)
T ss_dssp TCHHHHHHHHHHHHHTT------TTCCEEEEESCHHHHHHHHHHHHHHT--CCCEEEST---TSCHHHHHHHHHTTSSTT
T ss_pred cChHHHHHHHHHHHHhh------CCCeEEEEechHHHHHHHHHHHHhCC--CCEEEEeC---CCCHHHHHHHHHHhhCCC
Confidence 57799999999988754 36899999999999999999999988 99999999 999999999999999965
Q ss_pred c---cEEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC---ceEEEEEeCCchhhHHHHHH
Q psy4150 176 F---NTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN---GRCVILLTQGREAHNFQTSM 241 (395)
Q Consensus 176 ~---~vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~---g~~i~l~~~~~e~~~~~~~~ 241 (395)
. .+|++|.++++|||++.+++||+||+|||+..++||+||++|.|+ ..++.|++.++.+..+....
T Consensus 623 ~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~ 694 (800)
T 3mwy_W 623 SNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERA 694 (800)
T ss_dssp CSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHH
T ss_pred CCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHH
Confidence 5 489999999999999999999999999999999999999999973 45667888888776654433
No 60
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.70 E-value=2.9e-17 Score=176.24 Aligned_cols=110 Identities=22% Similarity=0.338 Sum_probs=97.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCC-------------------------------CceeEEeccCCCCCHHHHHHHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPM-------------------------------VKASMFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~-------------------------------~~~~~lhg~~~~~~~~~R~~~l 168 (395)
++++||||++++.++.++..|.+.... ..+.++|| +|++.+|..++
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~---~l~~~~R~~v~ 313 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA---GLGRDERVLVE 313 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT---TSCHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC---CCCHHHHHHHH
Confidence 589999999999999999998753210 23778888 99999999999
Q ss_pred HHHhcCCccEEEEcCccccCCCCCCCCEEEE----cC----CCCChhhHhhhcccccccc---CceEEEEEeCCc
Q psy4150 169 KKFRAGEFNTLIATSVGEEGLDIGEIDLVIC----FD----AQKSPIKMVQRLGRTGRKR---NGRCVILLTQGR 232 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~----~d----~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~ 232 (395)
+.|++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| .|.+++++++.+
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 388 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD 388 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999999999 77 5889999999999999987 577888777655
No 61
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.70 E-value=3e-17 Score=175.66 Aligned_cols=110 Identities=19% Similarity=0.343 Sum_probs=97.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC----------------------------CCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP----------------------------MVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~----------------------------~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
++++||||++++.++.++..|.+..+ ...+.++|| +|++.+|..+++.|
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~---~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHA---GLLNGQRRVVEDAF 318 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECT---TSCHHHHHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecC---CCCHHHHHHHHHHH
Confidence 58999999999999999998875310 024778888 99999999999999
Q ss_pred hcCCccEEEEcCccccCCCCCCCCEEEE----cC---CCCChhhHhhhcccccccc---CceEEEEEeCCc
Q psy4150 172 RAGEFNTLIATSVGEEGLDIGEIDLVIC----FD---AQKSPIKMVQRLGRTGRKR---NGRCVILLTQGR 232 (395)
Q Consensus 172 k~g~~~vLVaT~v~~~GlDip~v~~VI~----~d---~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~~ 232 (395)
++|.++|||||+++++|||+|++++||+ || .|.+..+|+||+|||||.| .|.++++++..+
T Consensus 319 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 319 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 389 (702)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred HCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCcc
Confidence 9999999999999999999999999999 77 7889999999999999997 678888776654
No 62
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.70 E-value=1.5e-17 Score=168.41 Aligned_cols=100 Identities=19% Similarity=0.182 Sum_probs=88.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCE---
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDL--- 196 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~--- 196 (395)
++++||||+++..++.+++.|.+.+ +++..+|| + +|.+++++|++|+++|||||+++++|||+| +..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~--~~v~~lhg---~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~ 240 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAG--KKVLYLNR---K----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVID 240 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTT--CCEEEEST---T----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcC--CeEEEeCC---c----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEe
Confidence 4689999999999999999999987 89999999 5 578899999999999999999999999999 654
Q ss_pred --------------EEEcCCCCChhhHhhhcccccccc-CceEEEEEe
Q psy4150 197 --------------VICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLT 229 (395)
Q Consensus 197 --------------VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~ 229 (395)
||+++.|.+..+|+||+||+||.| .+.+++++.
T Consensus 241 ~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 241 PRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 688899999999999999999997 333444443
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.69 E-value=2.6e-17 Score=172.55 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCC------CceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM------VKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~------~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
+...+.+.|.+++.. .....++||||+++..|+.+++.|.+.++. -.+..+|| +++ .+|..++++|+
T Consensus 421 r~~~i~~~l~~~l~~---~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g---~~~-~~r~~~l~~F~ 493 (590)
T 3h1t_A 421 RTDAFAKHLTDFMKR---TDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTS---EEG-KIGKGHLSRFQ 493 (590)
T ss_dssp THHHHHHHHHHHHHH---HCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSS---TTH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---cCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeC---CCh-HHHHHHHHHHh
Confidence 444555555555443 144689999999999999999999876531 12567788 664 47999999999
Q ss_pred cCCcc---EEEEcCccccCCCCCCCCEEEEcCCCCChhhHhhhccccccccC
Q psy4150 173 AGEFN---TLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221 (395)
Q Consensus 173 ~g~~~---vLVaT~v~~~GlDip~v~~VI~~d~p~s~~~yiQr~GRagR~~~ 221 (395)
+|+.+ |||||+++++|||+|.|++||++++|+|+..|+||+||+||.+.
T Consensus 494 ~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 494 ELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred CCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 98876 89999999999999999999999999999999999999999864
No 64
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.69 E-value=7.6e-17 Score=180.83 Aligned_cols=108 Identities=23% Similarity=0.322 Sum_probs=100.2
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
+++++|||+++..++.+++.|.+..|.+++..+|| +|++.+|..++++|++|+++|||||+++++|||+|++++||+
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg---~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi 888 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG---QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 888 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCS---SCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeC---CCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE
Confidence 68999999999999999999999866689999999 999999999999999999999999999999999999999999
Q ss_pred cCC-CCChhhHhhhcccccccc-CceEEEEEeC
Q psy4150 200 FDA-QKSPIKMVQRLGRTGRKR-NGRCVILLTQ 230 (395)
Q Consensus 200 ~d~-p~s~~~yiQr~GRagR~~-~g~~i~l~~~ 230 (395)
+++ +++..+|+||+||+||.| .|.+++++.+
T Consensus 889 ~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~ 921 (1151)
T 2eyq_A 889 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 921 (1151)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred eCCCCCCHHHHHHHHhccCcCCCceEEEEEECC
Confidence 998 569999999999999997 6777766654
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=2e-16 Score=168.19 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=89.6
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc--CCccEEEEcCccccCCCCCCCCEEE
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA--GEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~--g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
...||||+|+..++.+++.|.+.+ +.+..+|| +|++.+|..+++.|+. |.++|||||+++++|||+ .|++||
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g--~~v~~lHG---~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI 394 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRG--LESAVIYG---SLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRII 394 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTT--CCCEEECT---TSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEE
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcC--CCeeeeec---cCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEE
Confidence 445899999999999999999988 89999999 9999999999999999 889999999999999999 899999
Q ss_pred EcCC--------------CCChhhHhhhcccccccc
Q psy4150 199 CFDA--------------QKSPIKMVQRLGRTGRKR 220 (395)
Q Consensus 199 ~~d~--------------p~s~~~yiQr~GRagR~~ 220 (395)
++|+ |.+..+|+||+|||||.|
T Consensus 395 ~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 395 FYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp ESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred ECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 9999 779999999999999997
No 66
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.66 E-value=4.5e-17 Score=172.01 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=89.9
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEE
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI 198 (395)
.++++||||+|++.++.+++.|.+.+ +.+..+|| +|++.+ |+.+..+||||||++++|||+| |++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g--~~v~~lHG---~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI 461 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLG--INAVAYYR---GLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVI 461 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTT--CCEEEECT---TSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCC--CcEEEecC---CCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEE
Confidence 36899999999999999999999998 99999999 999875 5567779999999999999997 99988
Q ss_pred ----------EcC-----------CCCChhhHhhhccccccccCceEEEEEeCCchh
Q psy4150 199 ----------CFD-----------AQKSPIKMVQRLGRTGRKRNGRCVILLTQGREA 234 (395)
Q Consensus 199 ----------~~d-----------~p~s~~~yiQr~GRagR~~~g~~i~l~~~~~e~ 234 (395)
||| .|.+..+|+||+|||||.+.|. +.|+++.+..
T Consensus 462 ~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 462 DCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp ECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred ecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 788 8999999999999999955777 7777765543
No 67
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.66 E-value=2.9e-17 Score=177.09 Aligned_cols=126 Identities=19% Similarity=0.371 Sum_probs=104.7
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcH--------HHHHHHHHHHcc-cCCCCceeEEeccCCCCCHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYR--------VVVAEIFDVLKP-LEPMVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~--------~~ae~l~~~L~~-~~~~~~~~~lhg~~~~~~~~~R~ 165 (395)
....+...+.+.+..... .+.+++|||++. ..++.+++.|.+ ..+.+.+..+|| +|++.+|.
T Consensus 559 ~~~~~~~~l~~~i~~~l~------~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG---~m~~~eR~ 629 (780)
T 1gm5_A 559 VPMDRVNEVYEFVRQEVM------RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHG---RLSQEEKD 629 (780)
T ss_dssp CCSSTHHHHHHHHHHHTT------TSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCS---SSCCSCSH
T ss_pred eccchHHHHHHHHHHHHh------cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeC---CCCHHHHH
Confidence 344566666666665443 368999999965 458889999988 545589999999 99999999
Q ss_pred HHHHHHhcCCccEEEEcCccccCCCCCCCCEEEEcCCCC-ChhhHhhhcccccccc-CceEEEEEe
Q psy4150 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPIKMVQRLGRTGRKR-NGRCVILLT 229 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~~d~p~-s~~~yiQr~GRagR~~-~g~~i~l~~ 229 (395)
.++++|++|+++|||||+++++|||+|+|++||++|+|. +...|.||+||+||.| .|.+++++.
T Consensus 630 ~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 630 RVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp HHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred HHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999999999999999999999999999999999996 6888999999999997 677776665
No 68
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.53 E-value=7.5e-15 Score=169.75 Aligned_cols=112 Identities=16% Similarity=0.360 Sum_probs=91.8
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccC----C-------------------------------CCceeEEeccCCCCCHH
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLE----P-------------------------------MVKASMFVGQSSGVTQQ 162 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~----~-------------------------------~~~~~~lhg~~~~~~~~ 162 (395)
..++++||||+||+.|+.++..|.+.. . ...+.+.|| +|++.
T Consensus 315 ~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHa---gL~~~ 391 (1724)
T 4f92_B 315 AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHA---GMTRV 391 (1724)
T ss_dssp CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECS---SSCTH
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcC---CCCHH
Confidence 346789999999999998888775320 0 023566677 99999
Q ss_pred HHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE----cCC------CCChhhHhhhcccccccc---CceEEEEEe
Q psy4150 163 EQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC----FDA------QKSPIKMVQRLGRTGRKR---NGRCVILLT 229 (395)
Q Consensus 163 ~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~----~d~------p~s~~~yiQr~GRagR~~---~g~~i~l~~ 229 (395)
+|..+.+.|++|.++|||||+++++|||+|.+++||. ||. |-++.+|+||+|||||.| .|.+++++.
T Consensus 392 ~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~ 471 (1724)
T 4f92_B 392 DRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS 471 (1724)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEec
Confidence 9999999999999999999999999999999999995 554 458999999999999996 577776665
Q ss_pred CCc
Q psy4150 230 QGR 232 (395)
Q Consensus 230 ~~~ 232 (395)
..+
T Consensus 472 ~~~ 474 (1724)
T 4f92_B 472 HGE 474 (1724)
T ss_dssp STT
T ss_pred chh
Confidence 544
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.46 E-value=1.3e-13 Score=159.54 Aligned_cols=111 Identities=17% Similarity=0.280 Sum_probs=91.4
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccC-----C---------------------------CCceeEEeccCCCCCHHHHH
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLE-----P---------------------------MVKASMFVGQSSGVTQQEQK 165 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~-----~---------------------------~~~~~~lhg~~~~~~~~~R~ 165 (395)
..+.++||||+|+..|+.++..|.... + ...+.++|| +|++.+|.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHa---gL~~~~R~ 1229 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHE---GLSPMERR 1229 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECT---TSCHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECC---CCCHHHHH
Confidence 456899999999999998887663210 0 123667788 99999999
Q ss_pred HHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE----cC------CCCChhhHhhhcccccccc---CceEEEEEeCC
Q psy4150 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC----FD------AQKSPIKMVQRLGRTGRKR---NGRCVILLTQG 231 (395)
Q Consensus 166 ~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~----~d------~p~s~~~yiQr~GRagR~~---~g~~i~l~~~~ 231 (395)
.+.+.|++|.++|||||+++++|||+|.+.+||. || .|-++.+|+||+|||||+| .|.+++++.+.
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 9999999999999999999999999999999983 33 3568999999999999997 57777776643
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.31 E-value=1.1e-11 Score=137.11 Aligned_cols=123 Identities=11% Similarity=0.231 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHHHhhhc----cCCCccEEEEcCcHHHHHHHHHHHcccCC----------CCce-eEEeccCC-----
Q psy4150 98 LKFIRLREILESHFRLHAE----KGETTKVIIFANYRVVVAEIFDVLKPLEP----------MVKA-SMFVGQSS----- 157 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~----~~~~~r~iVF~~t~~~ae~l~~~L~~~~~----------~~~~-~~lhg~~~----- 157 (395)
.++..+...+..++..... ...+.++||||+++..|..+++.|.+.++ .+++ .++||..+
T Consensus 511 ~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~ 590 (1038)
T 2w00_A 511 MRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNA 590 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCcccccc
Confidence 3455555555555533110 01346899999999999999999987641 2455 44554210
Q ss_pred --C----------CCH-----------------------------HHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCE
Q psy4150 158 --G----------VTQ-----------------------------QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDL 196 (395)
Q Consensus 158 --~----------~~~-----------------------------~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~ 196 (395)
. |++ .+|..++++|++|+++|||+|+++.+|+|+|.+ .
T Consensus 591 ~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~ 669 (1038)
T 2w00_A 591 IGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-N 669 (1038)
T ss_dssp CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-E
T ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-c
Confidence 1 232 248899999999999999999999999999999 7
Q ss_pred EEEcCCCCChhhHhhhccccccccC
Q psy4150 197 VICFDAQKSPIKMVQRLGRTGRKRN 221 (395)
Q Consensus 197 VI~~d~p~s~~~yiQr~GRagR~~~ 221 (395)
|+++|.|.+...|+||+||++|.+.
T Consensus 670 tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 670 TLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp EEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred EEEEccCCCccceeehhhccCcCCC
Confidence 8899999999999999999999854
No 71
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.44 E-value=4e-07 Score=94.41 Aligned_cols=88 Identities=10% Similarity=0.194 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEE
Q psy4150 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180 (395)
Q Consensus 101 ~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLV 180 (395)
..+.+.|..... ...+++|||++|....+.+++.|... ..+.+| .. ..|..+++.|+.|. .||+
T Consensus 370 ~~~~~~l~~~~~-----~~~g~~lvff~S~~~~~~v~~~l~~~-----~~~~q~---~~--~~~~~~l~~f~~~~-~il~ 433 (540)
T 2vl7_A 370 PIYSILLKRIYE-----NSSKSVLVFFPSYEMLESVRIHLSGI-----PVIEEN---KK--TRHEEVLELMKTGK-YLVM 433 (540)
T ss_dssp HHHHHHHHHHHH-----TCSSEEEEEESCHHHHHHHHTTCTTS-----CEEEST---TT--CCHHHHHHHHHTSC-CEEE
T ss_pred HHHHHHHHHHHH-----hCCCCEEEEeCCHHHHHHHHHHhccC-----ceEecC---CC--CcHHHHHHHHhcCC-eEEE
Confidence 556666666544 24578999999999999999888642 245565 32 45888999999865 5666
Q ss_pred --EcCccccCCCCCC----CCEEEEcCCCC
Q psy4150 181 --ATSVGEEGLDIGE----IDLVICFDAQK 204 (395)
Q Consensus 181 --aT~v~~~GlDip~----v~~VI~~d~p~ 204 (395)
||+.+.+|||+|+ +++||++++|.
T Consensus 434 ~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf 463 (540)
T 2vl7_A 434 LVMRAKESEGVEFREKENLFESLVLAGLPY 463 (540)
T ss_dssp EEC---------------CEEEEEEESCCC
T ss_pred EEecCceecceecCCCcccccEEEEECCCC
Confidence 8999999999997 89999999985
No 72
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.43 E-value=1.9e-06 Score=83.30 Aligned_cols=130 Identities=17% Similarity=0.111 Sum_probs=95.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
..+.|+..|..+|..... .+.++|||++...+.+-|.++|...+ +....+.| .....++. -.++
T Consensus 106 ~~SGKf~~L~~LL~~l~~------~~~kVLIfsq~t~~LDilE~~l~~~~--~~y~RlDG---~~~~~~~k-----~~~~ 169 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQE------YETETAIVCRPGRTMDLLEALLLGNK--VHIKRYDG---HSIKSAAA-----ANDF 169 (328)
T ss_dssp HTCHHHHHHHHHHHHHTT------SCEEEEEEECSTHHHHHHHHHHTTSS--CEEEESSS---CCC------------CC
T ss_pred HcCccHHHHHHHHHHHHh------CCCEEEEEECChhHHHHHHHHHhcCC--CceEeCCC---Cchhhhhh-----cccC
Confidence 356799999999987643 47899999999999999999999888 88888888 42222211 1245
Q ss_pred CccEEEEcCccccCCC-----CCCCCEEEEcCCCCChhhH-hhhcccccccc-----CceEEEEEeCCchhhHHHHH
Q psy4150 175 EFNTLIATSVGEEGLD-----IGEIDLVICFDAQKSPIKM-VQRLGRTGRKR-----NGRCVILLTQGREAHNFQTS 240 (395)
Q Consensus 175 ~~~vLVaT~v~~~GlD-----ip~v~~VI~~d~p~s~~~y-iQr~GRagR~~-----~g~~i~l~~~~~e~~~~~~~ 240 (395)
.+.+.+.|..+.-|++ +...+.||.||..|++..= +|.+-|+.|.| .-.++-+++.++-++.....
T Consensus 170 ~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~ 246 (328)
T 3hgt_A 170 SCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFF 246 (328)
T ss_dssp SEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHH
T ss_pred CceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHc
Confidence 5566555777777776 6789999999999999874 88887777763 34577889998887765544
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.15 E-value=1.9e-05 Score=85.07 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=93.8
Q ss_pred eeeeccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHc-----------------------------
Q psy4150 91 SEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK----------------------------- 141 (395)
Q Consensus 91 ~~~~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~----------------------------- 141 (395)
..|.....|+..+.+-+.+.... +.+|||+|.|....+.|+..|.
T Consensus 420 ~vy~t~~~K~~AIv~eI~~~~~~------GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (997)
T 2ipc_A 420 VVYRTEKGKFYAVVEEIAEKYER------GQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWE 493 (997)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred eEEcCHHHHHHHHHHHHHHHHHC------CCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchh
Confidence 44556677888887767665543 6899999999999999999998
Q ss_pred -----------------------------------------------ccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 142 -----------------------------------------------PLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 142 -----------------------------------------------~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
+.| ++..+|.. .-...+ .+++. ..|
T Consensus 494 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--I~H~VLNA---K~he~E-AeIIA--qAG 565 (997)
T 2ipc_A 494 RLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQG--IPHQVLNA---KHHARE-AEIVA--QAG 565 (997)
T ss_dssp HHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC--CCCCEECS---SSHHHH-HHHHH--TTT
T ss_pred hhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcC--CCeeeccc---cchHHH-HHHHH--hcC
Confidence 233 55555555 222222 22332 345
Q ss_pred -CccEEEEcCccccCCCCCCC-------------------C---------------------------------------
Q psy4150 175 -EFNTLIATSVGEEGLDIGEI-------------------D--------------------------------------- 195 (395)
Q Consensus 175 -~~~vLVaT~v~~~GlDip~v-------------------~--------------------------------------- 195 (395)
.-.|-|||+.++||.||-=- +
T Consensus 566 ~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (997)
T 2ipc_A 566 RSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIR 645 (997)
T ss_dssp STTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhh
Confidence 45688999999999999522 1
Q ss_pred ----------------EEEEcCCCCChhhHhhhcccccccc-CceEEEEEeCCch
Q psy4150 196 ----------------LVICFDAQKSPIKMVQRLGRTGRKR-NGRCVILLTQGRE 233 (395)
Q Consensus 196 ----------------~VI~~d~p~s~~~yiQr~GRagR~~-~g~~i~l~~~~~e 233 (395)
+||--..+.|..--.|-.||+||.| +|...+|++-.++
T Consensus 646 ~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 646 EECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp HHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred hhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 7888889999999999999999998 6777677665543
No 74
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=98.10 E-value=6e-07 Score=65.49 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=34.8
Q ss_pred hhhhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhhc
Q psy4150 328 NAKKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQSS 366 (395)
Q Consensus 328 ~~~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~~ 366 (395)
+.+..++++|.+||++|+ ||.||.+||+|..|+.++.
T Consensus 24 ~~i~~Le~~M~~AA~~le--FE~AA~lRD~I~~L~~~l~ 60 (63)
T 1e52_A 24 QKIHELEGLMMQHAQNLE--FEEAAQIRDQLHQLRELFI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHTTC--HHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999 9999999999999998764
No 75
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.55 E-value=0.00019 Score=75.52 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...+.+.|...... .+++++||++|....+.+++.|.... .+ ... +++..++..+++.|+ ++-.||
T Consensus 433 ~~~~~~~i~~l~~~-----~~g~~lvlF~Sy~~l~~v~~~l~~~~--~~---~~q---~~~~~~~~~ll~~f~-~~~~vL 498 (620)
T 4a15_A 433 LDRMATVIEDIILK-----VKKNTIVYFPSYSLMDRVENRVSFEH--MK---EYR---GIDQKELYSMLKKFR-RDHGTI 498 (620)
T ss_dssp HHHHHHHHHHHHHH-----HCSCEEEEESCHHHHHHHTSSCCSCC--EE---CCT---TCCSHHHHHHHHHHT-TSCCEE
T ss_pred HHHHHHHHHHHHHh-----CCCCEEEEeCCHHHHHHHHHHHHhcc--hh---ccC---CCChhHHHHHHHHhc-cCCcEE
Confidence 34555666665543 25779999999999999999887222 22 333 677778999999999 888999
Q ss_pred EEcC--ccccCCCCCC--CCEEEEcCCCC
Q psy4150 180 IATS--VGEEGLDIGE--IDLVICFDAQK 204 (395)
Q Consensus 180 VaT~--v~~~GlDip~--v~~VI~~d~p~ 204 (395)
+||. .+.+|||+|+ +.+||+..+|.
T Consensus 499 ~~v~~gsf~EGiD~~g~~l~~viI~~lPf 527 (620)
T 4a15_A 499 FAVSGGRLSEGINFPGNELEMIILAGLPF 527 (620)
T ss_dssp EEETTSCC--------CCCCEEEESSCCC
T ss_pred EEEecCceeccccCCCCceEEEEEEcCCC
Confidence 9985 8999999996 78999998884
No 76
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.55 E-value=0.016 Score=59.73 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
...+.+.|...... .++++|||+++....+.+++. .+ . ..+..+. +++ +..+++.|+.+.-.||
T Consensus 378 ~~~l~~~i~~l~~~-----~~g~~lvlF~Sy~~l~~v~~~---~~--~-~v~~q~~--~~~---~~~~~~~~~~~~~~vl 441 (551)
T 3crv_A 378 WKRYADYLLKIYFQ-----AKANVLVVFPSYEIMDRVMSR---IS--L-PKYVESE--DSS---VEDLYSAISANNKVLI 441 (551)
T ss_dssp HHHHHHHHHHHHHH-----CSSEEEEEESCHHHHHHHHTT---CC--S-SEEECCS--SCC---HHHHHHHTTSSSSCEE
T ss_pred HHHHHHHHHHHHHh-----CCCCEEEEecCHHHHHHHHHh---cC--C-cEEEcCC--CCC---HHHHHHHHHhcCCeEE
Confidence 45667777666553 356999999999999998872 22 2 2333331 344 3457778854444899
Q ss_pred EEc--CccccCCCCC-----CCCEEEEcCCCC
Q psy4150 180 IAT--SVGEEGLDIG-----EIDLVICFDAQK 204 (395)
Q Consensus 180 VaT--~v~~~GlDip-----~v~~VI~~d~p~ 204 (395)
+|| ..+.+|||+| .+.+||...+|.
T Consensus 442 ~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 442 GSVGKGKLAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp EEESSCCSCCSSCCEETTEESEEEEEEESCCC
T ss_pred EEEecceecccccccccCCcceeEEEEEcCCC
Confidence 998 6999999999 488999888774
No 77
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.98 E-value=0.027 Score=60.60 Aligned_cols=101 Identities=13% Similarity=0.230 Sum_probs=78.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.....-.+...+.. +.+++|.++|+.-+..+++.+.+..+ ++++..+|| +++..+|...+..+.
T Consensus 398 TGSGKTlvall~il~~l~~------g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G---~~~~~~r~~~~~~l~ 468 (780)
T 1gm5_A 398 VGSGKTVVAQLAILDNYEA------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIG---ATTPSEKEKIKSGLR 468 (780)
T ss_dssp SSSSHHHHHHHHHHHHHHH------TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCS---SSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc------CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeC---CCCHHHHHHHHHHHh
Confidence 4556766655444444433 57999999999998888877665421 288999999 999999999999999
Q ss_pred cCCccEEEEcC-ccccCCCCCCCCEEEEcCCCC
Q psy4150 173 AGEFNTLIATS-VGEEGLDIGEIDLVICFDAQK 204 (395)
Q Consensus 173 ~g~~~vLVaT~-v~~~GlDip~v~~VI~~d~p~ 204 (395)
+|.++|+|+|. .+...+++..+.+||.=....
T Consensus 469 ~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr 501 (780)
T 1gm5_A 469 NGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHR 501 (780)
T ss_dssp SSCCCEEEECTTHHHHCCCCSCCCEEEEESCCC
T ss_pred cCCCCEEEECHHHHhhhhhccCCceEEecccch
Confidence 99999999995 456678899999998766553
No 78
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.84 E-value=0.21 Score=48.75 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=71.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.+..|.-...-.+.... ..+.++||.++|+..+..+++.+...++ .+++..+|| +.+..++...++.+..
T Consensus 45 TGsGKT~~~l~~~~~~~------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g---~~~~~~~~~~~~~l~~ 115 (414)
T 3oiy_A 45 TGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYS---SMKKEEKEKFEKSFEE 115 (414)
T ss_dssp SSSSHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCT---TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh------cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEEC---CCChhhHHHHHHHhhc
Confidence 45557663333322222 2368999999999999999999988542 389999999 9999999999999999
Q ss_pred CCccEEEEcCc-----cccCCCCCCCCEEEEcCC
Q psy4150 174 GEFNTLIATSV-----GEEGLDIGEIDLVICFDA 202 (395)
Q Consensus 174 g~~~vLVaT~v-----~~~GlDip~v~~VI~~d~ 202 (395)
|..+|+|||.- +.. +++..+++||.=.+
T Consensus 116 ~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEa 148 (414)
T 3oiy_A 116 DDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDV 148 (414)
T ss_dssp TCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCH
T ss_pred CCCCEEEECHHHHHHHHHH-hccccccEEEEeCh
Confidence 99999999953 122 44556676665444
No 79
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=93.24 E-value=0.39 Score=41.74 Aligned_cols=101 Identities=17% Similarity=0.256 Sum_probs=64.7
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.+..|.-...-.+...+........+.++||.|+++..+..+++.+....+.+++..++| +.+.......+. .
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~ 119 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYG---GTGYGKQKEALL----R 119 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECS---SSCSHHHHHHHH----H
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEEC---CCChHHHHHHhh----C
Confidence 455677654333333322111113467899999999999999999998876688888888 665544433332 2
Q ss_pred CccEEEEcC-----ccc-cCCCCCCCCEEEEcCC
Q psy4150 175 EFNTLIATS-----VGE-EGLDIGEIDLVICFDA 202 (395)
Q Consensus 175 ~~~vLVaT~-----v~~-~GlDip~v~~VI~~d~ 202 (395)
..+|+|+|. .+. ..+++..+++||.=.+
T Consensus 120 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEa 153 (207)
T 2gxq_A 120 GADAVVATPGRALDYLRQGVLDLSRVEVAVLDEA 153 (207)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESH
T ss_pred CCCEEEECHHHHHHHHHcCCcchhhceEEEEECh
Confidence 588999995 222 3456777777775443
No 80
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.11 E-value=0.32 Score=54.60 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=72.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.......+..... .+.+++|.|+|+..+...++.+.+..+ .+.+..++| ..+..++..+++.+.
T Consensus 633 TGsGKT~val~aa~~~~~------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~---~~~~~~~~~~~~~l~ 703 (1151)
T 2eyq_A 633 VGFGKTEVAMRAAFLAVD------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR---FRSAKEQTQILAEVA 703 (1151)
T ss_dssp CCTTTHHHHHHHHHHHHT------TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEEST---TSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH------hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeC---CCCHHHHHHHHHHHh
Confidence 445576554333322222 357999999999999988888775432 267888998 888999999999999
Q ss_pred cCCccEEEEc-CccccCCCCCCCCEEEE
Q psy4150 173 AGEFNTLIAT-SVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 173 ~g~~~vLVaT-~v~~~GlDip~v~~VI~ 199 (395)
.|.++|+|+| .++...+.+.++.+||.
T Consensus 704 ~g~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 704 EGKIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp TTCCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred cCCCCEEEECHHHHhCCccccccceEEE
Confidence 9999999999 56666788888888874
No 81
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=92.97 E-value=0.23 Score=55.48 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=75.0
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
..+..|-...+-.+.... ..+.++||.++|+..|..+++.|...+ ..+++..+|| +++..+|...++.+.
T Consensus 101 pTGSGKTl~~l~~il~~~------~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~G---g~~~~er~~~~~~l~ 171 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLA------RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYS---SMKKEEKEKFEKSFE 171 (1104)
T ss_dssp STTCCHHHHHHHHHHHHH------TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECT---TCCTTHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH------hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeC---CCCHHHHHHHHHHHh
Confidence 345667775444443333 236899999999999999999998843 2379999999 999988899999999
Q ss_pred cCCccEEEEcCc-----cccCCCCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-----GEEGLDIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-----~~~GlDip~v~~VI~~d~ 202 (395)
.|..+|||||.- +.. +++..+++||.=.+
T Consensus 172 ~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 172 EDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDV 205 (1104)
T ss_dssp TSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCH
T ss_pred CCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCC
Confidence 999999999952 222 55667888886554
No 82
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=90.87 E-value=1.4 Score=38.64 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=62.9
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|.-...-.+...+.. .....++||.|+|+..+..+++.+.+.. +.+++..++| +.+...+.. .+
T Consensus 60 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g---~~~~~~~~~---~~ 130 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEP---VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG---GLSIKKDEE---VL 130 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCC---CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESC---CSCHHHHHH---HH
T ss_pred CCCchhhhhhHHHHHhhhc---cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeC---CCChHHHHH---HH
Confidence 4555765544333333221 1234589999999999999888776653 2478889999 777665543 44
Q ss_pred hcCCccEEEEcCc-----c-ccCCCCCCCCEEEEcC
Q psy4150 172 RAGEFNTLIATSV-----G-EEGLDIGEIDLVICFD 201 (395)
Q Consensus 172 k~g~~~vLVaT~v-----~-~~GlDip~v~~VI~~d 201 (395)
..+..+|+|+|.- + ...+++..+++||.=.
T Consensus 131 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 166 (220)
T 1t6n_A 131 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 166 (220)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred hcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcC
Confidence 5677899999952 1 2335566666666433
No 83
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=90.12 E-value=1.1 Score=39.90 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=50.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-----ccc--CC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV-----GEE--GL 189 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v-----~~~--Gl 189 (395)
.+.++||.|+|+..+..+++.+...+. .+.+..++| +.+.......+ +..+|+|+|.- +.+ .+
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~ 167 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIG---GKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSF 167 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECC---C--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEEC---CCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCc
Confidence 357899999999999999988877653 277888888 66544433332 46899999952 222 35
Q ss_pred CCCCCCEEEEcC
Q psy4150 190 DIGEIDLVICFD 201 (395)
Q Consensus 190 Dip~v~~VI~~d 201 (395)
++..+++||.=.
T Consensus 168 ~~~~~~~lViDE 179 (236)
T 2pl3_A 168 HATDLQMLVLDE 179 (236)
T ss_dssp CCTTCCEEEETT
T ss_pred ccccccEEEEeC
Confidence 666677666543
No 84
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=90.11 E-value=1 Score=40.43 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=55.5
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----ccc-cCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGE-EGLD 190 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~-~GlD 190 (395)
.+.++||.++|+..+..+.+.+...+ ..+.+..++| +.+...+...+.. ..+|+|||. .+. ..++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~ 173 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYG---GAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTN 173 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECT---TSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEEC---CCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCC
Confidence 46789999999999998888776642 1278888999 8887766555443 489999995 232 3457
Q ss_pred CCCCCEEEEcCC
Q psy4150 191 IGEIDLVICFDA 202 (395)
Q Consensus 191 ip~v~~VI~~d~ 202 (395)
+..+.+||.=.+
T Consensus 174 ~~~~~~lViDEa 185 (242)
T 3fe2_A 174 LRRTTYLVLDEA 185 (242)
T ss_dssp CTTCCEEEETTH
T ss_pred cccccEEEEeCH
Confidence 778888775443
No 85
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=89.88 E-value=2 Score=38.90 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=63.7
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+...+.. ...+.++||.++|+..+..+++.+...+. .+.+..++| +.+...+...+
T Consensus 89 TGsGKT~~~~~~il~~l~~---~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~---- 158 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLE---TPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG---GIDSMSQSLAL---- 158 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHH---SCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT---TSCHHHHHHHH----
T ss_pred CCCCchhHhHHHHHHHHhc---CCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEEC---CCChHHHHHHh----
Confidence 4556776543333333222 13356899999999999988887766421 278888898 77766544333
Q ss_pred cCCccEEEEcCc-----cc--cCCCCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-----GE--EGLDIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-----~~--~GlDip~v~~VI~~d~ 202 (395)
.+..+|+|||.- +. .++++..+++||.=.+
T Consensus 159 ~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 159 AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 256899999942 22 4577788888776444
No 86
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=89.72 E-value=0.9 Score=40.71 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=47.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----cccc-CCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEE-GLD 190 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~-GlD 190 (395)
.+.++||.++|+..+..+++.+...+. .+.+..++| +.+.. .....+..+..+|+|+|. .+.+ .++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~ 170 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIG---GTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLS 170 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------------CCCSEEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEEC---CCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcC
Confidence 457999999999999999998877543 256677777 54433 234456677899999993 3333 356
Q ss_pred CCCCCEEEEcC
Q psy4150 191 IGEIDLVICFD 201 (395)
Q Consensus 191 ip~v~~VI~~d 201 (395)
+..+++||.=.
T Consensus 171 ~~~~~~lViDE 181 (237)
T 3bor_A 171 PKWIKMFVLDE 181 (237)
T ss_dssp STTCCEEEEES
T ss_pred cccCcEEEECC
Confidence 67777777543
No 87
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=88.41 E-value=1.4 Score=39.19 Aligned_cols=94 Identities=19% Similarity=0.227 Sum_probs=61.3
Q ss_pred ccccHHHH-HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIR-LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~-L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
.+..|.-. +.-++..... ...+.++||.|+|+..+..+++.+...+ +.+++..++| +.+..++...+
T Consensus 70 TGsGKT~~~~l~~l~~l~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~-- 140 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVL----ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG---GTPLSQDKTRL-- 140 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCT----TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECT---TSCHHHHHHHT--
T ss_pred CCCcHHHHHHHHHHHHHHh----cCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeC---CCCHHHHHHhc--
Confidence 45567655 3333333222 1345799999999999999998887653 2478888999 88776655443
Q ss_pred HhcCCccEEEEcCc-----c-ccCCCCCCCCEEEEc
Q psy4150 171 FRAGEFNTLIATSV-----G-EEGLDIGEIDLVICF 200 (395)
Q Consensus 171 Fk~g~~~vLVaT~v-----~-~~GlDip~v~~VI~~ 200 (395)
...+|+|+|.- + ...+++..+++||.=
T Consensus 141 ---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViD 173 (230)
T 2oxc_A 141 ---KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILD 173 (230)
T ss_dssp ---TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEES
T ss_pred ---cCCCEEEECHHHHHHHHhcCCcccccCCEEEeC
Confidence 35899999952 1 234556666666643
No 88
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.03 E-value=1 Score=45.92 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=54.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~ 183 (395)
.+++||.++++..+....+.|...| +.+..++| +.+..++..++..+..|..+||++|.
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g--i~~~~l~~---~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG--VAAACLNS---TQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT--CCEEEECT---TSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC--CcEEEEeC---CCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3789999999999999999999988 89999999 89999999999999999999999995
No 89
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=87.80 E-value=1.7 Score=37.51 Aligned_cols=97 Identities=11% Similarity=0.117 Sum_probs=60.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|--...-.+...... ...+.++||.|+|+..+..+++.+.... +.+.+..++| +.+..+.... +
T Consensus 49 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~---~ 119 (206)
T 1vec_A 49 NGTGKSGAYLIPLLERLDL---KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTG---GTNLRDDIMR---L 119 (206)
T ss_dssp SSSTTHHHHHHHHHHHCCT---TSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECS---SSCHHHHHHH---T
T ss_pred CCCchHHHHHHHHHHHhcc---cCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeC---CccHHHHHHh---c
Confidence 4555665433323232211 1345689999999999999888876543 2377888888 7766544322 2
Q ss_pred hcCCccEEEEcC-----cccc-CCCCCCCCEEEEcC
Q psy4150 172 RAGEFNTLIATS-----VGEE-GLDIGEIDLVICFD 201 (395)
Q Consensus 172 k~g~~~vLVaT~-----v~~~-GlDip~v~~VI~~d 201 (395)
.+..+|+|+|. .+.. .+++..+++||.=.
T Consensus 120 -~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDE 154 (206)
T 1vec_A 120 -DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDE 154 (206)
T ss_dssp -TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEET
T ss_pred -CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEC
Confidence 35789999996 2223 34666777777533
No 90
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.60 E-value=1.1 Score=46.46 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=54.1
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHH--hcCCccEEEEcC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF--RAGEFNTLIATS 183 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~F--k~g~~~vLVaT~ 183 (395)
.+++||.++++..+....+.|...| +.+..++| +++..++..++..+ ..+..+|||+|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g--i~~~~l~~---~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG--ISATMLNA---SSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT--CCEEECCS---SCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC--CcEEEEeC---CCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4799999999999999999999988 99999999 99999999999988 578999999997
No 91
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=86.43 E-value=4.1 Score=37.02 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=62.1
Q ss_pred ccccHHHHH-HHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRL-REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L-~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|.-.. .-++............+.++||.++|+..+..+++.+.+.+. .+.+..++| +......... +
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~---~ 173 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMG---GSNRSAEAQK---L 173 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECS---SSCHHHHHHH---H
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEEC---CCCHHHHHHH---h
Confidence 455576553 333333322100112367899999999999999888877542 266777888 6665554333 3
Q ss_pred hcCCccEEEEcC-----ccc--cCCCCCCCCEEEEcCC
Q psy4150 172 RAGEFNTLIATS-----VGE--EGLDIGEIDLVICFDA 202 (395)
Q Consensus 172 k~g~~~vLVaT~-----v~~--~GlDip~v~~VI~~d~ 202 (395)
..| .+|+|||. .+. .++++..+.+||.=.+
T Consensus 174 ~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 174 GNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp HHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred cCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 344 89999994 222 2467778888775443
No 92
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.20 E-value=1.2 Score=39.49 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=49.9
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccC-CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----c-cccCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----V-GEEGLDI 191 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~-~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v-~~~GlDi 191 (395)
.+.++||.++|+..+..+++.+.... ..+.+..++| +.+...+... +. ...+|+|||. . ....+++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~ 165 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYG---GRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNL 165 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC---------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEEC---CCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCc
Confidence 46789999999999999998887753 3478888888 6554443332 22 3489999994 1 2234567
Q ss_pred CCCCEEEEcCC
Q psy4150 192 GEIDLVICFDA 202 (395)
Q Consensus 192 p~v~~VI~~d~ 202 (395)
..+++||.=.+
T Consensus 166 ~~~~~lViDEa 176 (228)
T 3iuy_A 166 RSITYLVIDEA 176 (228)
T ss_dssp TTCCEEEECCH
T ss_pred ccceEEEEECH
Confidence 77777775443
No 93
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.47 E-value=4.2 Score=38.58 Aligned_cols=99 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|.-...-.+...+.. .....++||.|+++..+..+++.+.+.. +.+++..++| +.+...... .+
T Consensus 54 TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~---~~ 124 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEP---VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG---GLSIKKDEE---VL 124 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCC---CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECT---TSCHHHHHH---HH
T ss_pred CCCcHHHHHHHHHHHhhcc---cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeC---CCCHHHHHH---HH
Confidence 3455765443333333221 1235699999999999999888776642 3488999999 777665544 34
Q ss_pred hcCCccEEEEcCc-c-----ccCCCCCCCCEEEEcCC
Q psy4150 172 RAGEFNTLIATSV-G-----EEGLDIGEIDLVICFDA 202 (395)
Q Consensus 172 k~g~~~vLVaT~v-~-----~~GlDip~v~~VI~~d~ 202 (395)
..+..+|+|+|.- + ...+++..+++||.=.+
T Consensus 125 ~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEa 161 (391)
T 1xti_A 125 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 161 (391)
T ss_dssp HHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSH
T ss_pred hcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCH
Confidence 5677899999942 1 23467788888886443
No 94
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=84.57 E-value=3.5 Score=39.84 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=67.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-....++..++. ..+.++||.|+++..+..+.+.+.+.. +...+..+|| +....++.....
T Consensus 32 tG~GKT~~~~~~~~~~~~-----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g---~~~~~~~~~~~~--- 100 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLT-----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTG---EKSPEERSKAWA--- 100 (494)
T ss_dssp TTSCHHHHHHHHHHHHHH-----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECS---CSCHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHh-----cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeC---Ccchhhhhhhcc---
Confidence 355577766666655543 135799999999999999988888763 3348899999 888776655443
Q ss_pred cCCccEEEEcC-cc-----ccCCCCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATS-VG-----EEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~-v~-----~~GlDip~v~~VI~~d~p 203 (395)
..+|+|+|. .+ ...+....+++||.=.+.
T Consensus 101 --~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 135 (494)
T 1wp9_A 101 --RAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (494)
T ss_dssp --HCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred --CCCEEEecHHHHHHHHhcCCcchhhceEEEEECCc
Confidence 478999994 22 224667788888864443
No 95
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=83.43 E-value=2.3 Score=38.28 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=51.0
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-----c-ccCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV-----G-EEGLDI 191 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v-----~-~~GlDi 191 (395)
+.++||.|+|+..+..+++.+...+. .+.+..++| +.+.......+ ....+|+|||.- + ...+++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~ 172 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYG---GADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISL 172 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECS---SSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEEC---CCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCCh
Confidence 46899999999999998888766432 267778888 66554433322 346899999952 1 223567
Q ss_pred CCCCEEEEcC
Q psy4150 192 GEIDLVICFD 201 (395)
Q Consensus 192 p~v~~VI~~d 201 (395)
..+++||.=.
T Consensus 173 ~~~~~lViDE 182 (253)
T 1wrb_A 173 EFCKYIVLDE 182 (253)
T ss_dssp TTCCEEEEET
T ss_pred hhCCEEEEeC
Confidence 7777777543
No 96
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.22 E-value=2 Score=37.73 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=55.3
Q ss_pred ccccHHHH-HHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIR-LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~-L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|--. +.-++..... ...+.++||.++++..+..+++.+...+. .+.+..++| +.+..++... +
T Consensus 60 TGsGKT~~~~~~~l~~l~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~---~ 129 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDT----SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG---GTSFVEDAEG---L 129 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCT----TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------------C
T ss_pred CCCcHHHHHHHHHHHHHhc----cCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeC---CcchHHHHhc---C
Confidence 45567755 3333333211 13457999999999999988887776432 377888888 6554443322 2
Q ss_pred hcCCccEEEEcCc------cccCCCCCCCCEEEEcC
Q psy4150 172 RAGEFNTLIATSV------GEEGLDIGEIDLVICFD 201 (395)
Q Consensus 172 k~g~~~vLVaT~v------~~~GlDip~v~~VI~~d 201 (395)
. ..+|+|+|.- ....+++..+++||.=.
T Consensus 130 ~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 130 R--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp T--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred C--CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 2 3889999952 13456667777777543
No 97
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=82.12 E-value=1.2 Score=39.94 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=59.4
Q ss_pred eccccHHHHH-HHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 94 AWSHLKFIRL-REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 94 ~~~~~K~~~L-~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
..+..|.-.. .-++... .. ....+.++||.++|+..+..+++.+.+.+. .+.+..++| +... ......
T Consensus 74 ~TGsGKT~~~~l~~l~~l-~~--~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~ 144 (245)
T 3dkp_A 74 PTGSGKTLAFSIPILMQL-KQ--PANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHK---AAVA---AKKFGP 144 (245)
T ss_dssp CTTSCHHHHHHHHHHHHH-CS--CCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCH---HHHH---HTTTST
T ss_pred CCCCcHHHHHHHHHHHHH-hh--cccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEec---CccH---HHHhhh
Confidence 3455676553 3333332 21 112456899999999999999988877532 266666666 2211 111122
Q ss_pred HhcCCccEEEEcC-----cccc---CCCCCCCCEEEEcCC
Q psy4150 171 FRAGEFNTLIATS-----VGEE---GLDIGEIDLVICFDA 202 (395)
Q Consensus 171 Fk~g~~~vLVaT~-----v~~~---GlDip~v~~VI~~d~ 202 (395)
...+..+|+|||. .+.. ++++..+.+||.=.+
T Consensus 145 ~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEa 184 (245)
T 3dkp_A 145 KSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDES 184 (245)
T ss_dssp TSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSH
T ss_pred hhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeCh
Confidence 2356789999994 2222 477888888776444
No 98
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=80.64 E-value=2.7 Score=46.66 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=65.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CC----ceeEEeccCCCCCHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MV----KASMFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~----~~~~lhg~~~~~~~~~R~~~l 168 (395)
.+..|--.++-++.... ..+.++||.++|+..+..+++.+...+. .+ .+..+|| +.+..++...+
T Consensus 80 TGSGKTl~~lp~l~~~~------~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~G---g~~~~~~~~~~ 150 (1054)
T 1gku_B 80 TGVGKTSFGLAMSLFLA------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHG---RIPKREKENFM 150 (1054)
T ss_dssp BTSCSHHHHHHHHHHHH------TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCS---SCCSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh------hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeC---CCChhhHHHHH
Confidence 45557653333333332 2357999999999999998888876432 25 7888999 88888888888
Q ss_pred HHHhcCCccEEEEcCc-cccCCC-CCCCCEEEEcC
Q psy4150 169 KKFRAGEFNTLIATSV-GEEGLD-IGEIDLVICFD 201 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT~v-~~~GlD-ip~v~~VI~~d 201 (395)
+.++. .+|+|||+- +..-+. +..+++||.=.
T Consensus 151 ~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lViDE 183 (1054)
T 1gku_B 151 QNLRN--FKIVITTTQFLSKHYRELGHFDFIFVDD 183 (1054)
T ss_dssp HSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEESC
T ss_pred hhccC--CCEEEEcHHHHHHHHHHhccCCEEEEeC
Confidence 88877 999999951 111111 55777777533
No 99
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=79.55 E-value=4.9 Score=40.11 Aligned_cols=100 Identities=20% Similarity=0.142 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+...+.. .....+.++||.|+|+..+..+.+.+....+ .+++..+|| +.+...+...+.
T Consensus 31 tGsGKT~~~~~~~~~~~~~-~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~--- 103 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQN-MPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG---ENFSNVSVEKVI--- 103 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHT-CCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCC---C-----CHHHHH---
T ss_pred CCChHHHHHHHHHHHHHHh-CcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeC---CCCcchhHHHhh---
Confidence 4555766555455444432 0111268899999999999888887776522 288999999 765554433222
Q ss_pred cCCccEEEEcCc-----cccC-C-CCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-----GEEG-L-DIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-----~~~G-l-Dip~v~~VI~~d~ 202 (395)
...+|+|||.- +..| + .+..+++||.=.+
T Consensus 104 -~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEa 139 (556)
T 4a2p_A 104 -EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDEC 139 (556)
T ss_dssp -HHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETG
T ss_pred -CCCCEEEECHHHHHHHHHhCcccccccCCEEEEECC
Confidence 23789999952 2233 4 6778888886443
No 100
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=78.72 E-value=9 Score=36.42 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=63.7
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+..++.. ...+.++||.|+++..+..+++.+...++ .+.+..++| +......... .
T Consensus 67 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~----~ 136 (400)
T 1s2m_A 67 NGTGKTAAFVIPTLEKVKP---KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTG---GTNLRDDILR----L 136 (400)
T ss_dssp TTSCHHHHHHHHHHHHCCT---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECS---SSCHHHHHHH----T
T ss_pred CCcHHHHHHHHHHHHHHhh---ccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeC---CcchHHHHHH----h
Confidence 4556776544333333221 12456899999999999998888876543 367788888 6665543222 2
Q ss_pred cCCccEEEEcC-----ccc-cCCCCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATS-----VGE-EGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~-~GlDip~v~~VI~~d~p 203 (395)
.+..+|+|||. .+. ...++..+++||.=.+.
T Consensus 137 ~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 137 NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred cCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 46789999994 233 34677888888865543
No 101
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=78.67 E-value=4.4 Score=39.76 Aligned_cols=100 Identities=17% Similarity=0.206 Sum_probs=64.6
Q ss_pred ccccHHHHHH-HHHHHHHHhhh-ccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRLR-EILESHFRLHA-EKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L~-~lL~~~~~~~~-~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
.+..|.-... -++........ ....+.++||.++|+..+..+++.+.+.+. .+++..++| +.+...+...+
T Consensus 102 TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~g---g~~~~~~~~~l-- 176 (434)
T 2db3_A 102 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYG---GTSFRHQNECI-- 176 (434)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECT---TSCHHHHHHHH--
T ss_pred CCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEEC---CCCHHHHHHHh--
Confidence 4556776433 34433332200 112356899999999999999888876542 377888999 88776554433
Q ss_pred HhcCCccEEEEcC-----ccccC-CCCCCCCEEEEcC
Q psy4150 171 FRAGEFNTLIATS-----VGEEG-LDIGEIDLVICFD 201 (395)
Q Consensus 171 Fk~g~~~vLVaT~-----v~~~G-lDip~v~~VI~~d 201 (395)
...++|+|||. .+.+| +++..+++||.=.
T Consensus 177 --~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 177 --TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp --TTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred --hcCCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 24689999995 23333 6778888888543
No 102
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.09 E-value=4.1 Score=38.04 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=59.6
Q ss_pred ccccHHHHH-HHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRL-REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L-~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
.+..|.-.. +-+|..... ...+.++||.++|+..|..+++.+...+ +.+.+..++| +.+...+
T Consensus 140 TGsGKT~a~~lp~l~~l~~----~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~------ 206 (300)
T 3fmo_B 140 SGTGKTAAFVLAMLSQVEP----ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR---GNKLERG------ 206 (300)
T ss_dssp TTSSHHHHHHHHHHHHCCT----TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEEST---TCCCCTT------
T ss_pred CCCCccHHHHHHHHHhhhc----cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeC---CccHhhh------
Confidence 445576553 344433222 1334589999999999999888776654 3467777777 3322111
Q ss_pred HhcCCccEEEEcCcc------c-cCCCCCCCCEEEEcCC
Q psy4150 171 FRAGEFNTLIATSVG------E-EGLDIGEIDLVICFDA 202 (395)
Q Consensus 171 Fk~g~~~vLVaT~v~------~-~GlDip~v~~VI~~d~ 202 (395)
.....+|||||.-- . ..+++..+.+||.=.+
T Consensus 207 -~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 207 -QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp -CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred -hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 13567899999632 2 3578889998886554
No 103
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=77.24 E-value=7.5 Score=37.18 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=63.2
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+...+.. ...+.++||.|+|+..+..+++.+...+. .+.+..++| +.+..+....+.
T Consensus 83 TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~--- 153 (410)
T 2j0s_A 83 SGTGKTATFSISVLQCLDI---QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIG---GTNVGEDIRKLD--- 153 (410)
T ss_dssp TTSSHHHHHHHHHHHTCCT---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECT---TSCHHHHHHHHH---
T ss_pred CCCCchHHHHHHHHHHHhh---ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEEC---CCCHHHHHHHhh---
Confidence 4556775544434333221 13467999999999999999988876542 367777888 777666544433
Q ss_pred cCCccEEEEcC-----cccc-CCCCCCCCEEEEcC
Q psy4150 173 AGEFNTLIATS-----VGEE-GLDIGEIDLVICFD 201 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~~-GlDip~v~~VI~~d 201 (395)
...+|+|+|. .+.. .+++..+++||.=.
T Consensus 154 -~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 154 -YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp -HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred -cCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 2468999994 3333 46677788887543
No 104
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=77.22 E-value=2.4 Score=37.21 Aligned_cols=97 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC------CCceeEEeccCCCCCHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP------MVKASMFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~------~~~~~~lhg~~~~~~~~~R~~~l 168 (395)
.+..|.-...-.+...... ...+.++||.|+|+..+..+++.+.+... .+.+..++| +.+......
T Consensus 50 TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~-- 121 (219)
T 1q0u_A 50 TGTGKTHAYLLPIMEKIKP---ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIG---GTDKQKALE-- 121 (219)
T ss_dssp SSHHHHHHHHHHHHHHCCT---TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECC---CSHHHHTTC--
T ss_pred CCChHHHHHHHHHHHHHHh---CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeC---CCCHHHHHH--
Confidence 3455665533333332221 12357899999999999988887765421 267778888 654433211
Q ss_pred HHHhcCCccEEEEcC-----cccc-CCCCCCCCEEEEcC
Q psy4150 169 KKFRAGEFNTLIATS-----VGEE-GLDIGEIDLVICFD 201 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT~-----v~~~-GlDip~v~~VI~~d 201 (395)
.+ .+..+|+|+|. .+.. .+++..+++||.=.
T Consensus 122 -~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDE 158 (219)
T 1q0u_A 122 -KL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDE 158 (219)
T ss_dssp -CC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECS
T ss_pred -Hc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcC
Confidence 11 24678999994 2223 35666777766543
No 105
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=77.20 E-value=12 Score=34.86 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-.....+...... ..+.++||.|+++..+..+++.+.... ..+.+..++| +.........+.
T Consensus 53 TGsGKT~~~~~~~~~~~~~----~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~--- 122 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNE----NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYG---GKAIYPQIKALK--- 122 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCS----SSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECT---TSCHHHHHHHHH---
T ss_pred CCChHHHHHHHHHHHHhcc----cCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEEC---CcchHHHHhhcC---
Confidence 4556776655444444322 346799999999999998888887642 1367777888 776655444332
Q ss_pred cCCccEEEEcCc-----c-ccCCCCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-----G-EEGLDIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-----~-~~GlDip~v~~VI~~d~ 202 (395)
..+|+|+|.- + ...+++..+++||.=.+
T Consensus 123 --~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEa 156 (367)
T 1hv8_A 123 --NANIVVGTPGRILDHINRGTLNLKNVKYFILDEA 156 (367)
T ss_dssp --TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred --CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCc
Confidence 5789999952 1 22356778888875443
No 106
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=76.16 E-value=5.6 Score=38.11 Aligned_cols=75 Identities=16% Similarity=0.259 Sum_probs=53.3
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcC-----cccc-CCCCC
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATS-----VGEE-GLDIG 192 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~-----v~~~-GlDip 192 (395)
.++||.++|+..+..+++.+.+.+ ..+++..++| +.+..+....+ ....+|+|||. .+.. .+++.
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYG---GADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLD 174 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECS---SSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSBCCT
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEEC---CCCHHHHHHHh----hCCCCEEEEChHHHHHHHHcCCcChh
Confidence 579999999999999988877542 2378888898 77766544332 23579999996 2222 35677
Q ss_pred CCCEEEEcCC
Q psy4150 193 EIDLVICFDA 202 (395)
Q Consensus 193 ~v~~VI~~d~ 202 (395)
.+++||.=.+
T Consensus 175 ~~~~iViDEa 184 (417)
T 2i4i_A 175 FCKYLVLDEA 184 (417)
T ss_dssp TCCEEEESSH
T ss_pred hCcEEEEECh
Confidence 8888886444
No 107
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=75.41 E-value=7.4 Score=36.75 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=54.4
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-----c-ccCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV-----G-EEGLD 190 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v-----~-~~GlD 190 (395)
.+.++||.|+++..+..+++.+.+... .+.+..++| +.+..+....+. ..+|+|||.- + ...++
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~ 159 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG---GTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFR 159 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECS---SCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeC---CCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcc
Confidence 467999999999999988887766432 377888888 777766655544 4789999942 1 23456
Q ss_pred CCCCCEEEEcCC
Q psy4150 191 IGEIDLVICFDA 202 (395)
Q Consensus 191 ip~v~~VI~~d~ 202 (395)
+..+++||.=.+
T Consensus 160 ~~~~~~vIiDEa 171 (394)
T 1fuu_A 160 TDKIKMFILDEA 171 (394)
T ss_dssp CTTCCEEEEETH
T ss_pred hhhCcEEEEECh
Confidence 677888876444
No 108
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=74.35 E-value=4.8 Score=40.06 Aligned_cols=100 Identities=18% Similarity=0.156 Sum_probs=62.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+...+... ....+.++||.|+|+..+..+.+.+.+..+ .+.+..++| +.+...+...+.
T Consensus 28 tGsGKT~~~~~~~~~~~~~~-~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~--- 100 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKF-PCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISG---ATSDSVSVQHII--- 100 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTC-CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECT---TTGGGSCHHHHH---
T ss_pred CCChHHHHHHHHHHHHHHhc-ccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcC---CCcchhhHHHHh---
Confidence 45557666555555544430 111268999999999998888887776521 288999999 665444322222
Q ss_pred cCCccEEEEcCc-----cccC-C-CCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-----GEEG-L-DIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-----~~~G-l-Dip~v~~VI~~d~ 202 (395)
+..+|+|||.- +..| + ++..+++||.=.+
T Consensus 101 -~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEa 136 (555)
T 3tbk_A 101 -EDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDEC 136 (555)
T ss_dssp -HHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTG
T ss_pred -cCCCEEEECHHHHHHHHhcCcccccccCCEEEEECc
Confidence 24789999942 2233 3 5667888886444
No 109
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=73.19 E-value=1.4 Score=46.02 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=62.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHH-HHHHcccCCC-CceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEI-FDVLKPLEPM-VKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l-~~~L~~~~~~-~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+..++..........++||.++++..+..+ .+.|.+.++. +.+..++| +.+..++...+.
T Consensus 31 TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g---~~~~~~~~~~~~--- 104 (699)
T 4gl2_A 31 TGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG---DTQLKISFPEVV--- 104 (699)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC-------CCCCHHHHH---
T ss_pred CCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeC---CcchhhHHHhhh---
Confidence 345576665555555444311123347899999999998888 8888776654 88999999 554443332222
Q ss_pred cCCccEEEEcCc-c-----------ccCCCCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-G-----------EEGLDIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-~-----------~~GlDip~v~~VI~~d~ 202 (395)
+..+|||||.- + ...+.+..+++||.=.+
T Consensus 105 -~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEa 145 (699)
T 4gl2_A 105 -KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDEC 145 (699)
T ss_dssp -HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESG
T ss_pred -cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECc
Confidence 57899999942 2 22357778888885443
No 110
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=72.34 E-value=8.9 Score=40.87 Aligned_cols=100 Identities=20% Similarity=0.140 Sum_probs=62.0
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+..++... ....+.++||.|+|+..+..+.+.+.+..+ .+++..+|| +.+...+...+.
T Consensus 272 TGsGKTl~~~~~i~~~l~~~-~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g---~~~~~~~~~~~~--- 344 (797)
T 4a2q_A 272 TGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG---ENFSNVSVEKVI--- 344 (797)
T ss_dssp TTSCHHHHHHHHHHHHHHTC-CSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECC---C-----CHHHHH---
T ss_pred CCChHHHHHHHHHHHHHHhc-cccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeC---CcchhhhHHHhh---
Confidence 45567766555555554431 111268999999999999988887776532 389999999 775554433322
Q ss_pred cCCccEEEEcCc-----cccC-C-CCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-----GEEG-L-DIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-----~~~G-l-Dip~v~~VI~~d~ 202 (395)
+..+|+|||.- +..| + .+..+++||.=.+
T Consensus 345 -~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 380 (797)
T 4a2q_A 345 -EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDEC 380 (797)
T ss_dssp -HTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTG
T ss_pred -CCCCEEEEchHHHHHHHHhccccccccCCEEEEECc
Confidence 35889999942 2233 3 5667888886444
No 111
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=71.94 E-value=6.8 Score=36.07 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=52.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-----cc-cCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV-----GE-EGLDI 191 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v-----~~-~GlDi 191 (395)
+.++||.|+++..+..+++.+.+.++ .+.+..++| +.+.......+ . ..+|+|+|.- +. ..+++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~ 127 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYG---GMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDL 127 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECT---TSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCG
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEEC---CcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcch
Confidence 47899999999999999988876432 367888888 77766544332 2 3889999942 12 23566
Q ss_pred CCCCEEEEcC
Q psy4150 192 GEIDLVICFD 201 (395)
Q Consensus 192 p~v~~VI~~d 201 (395)
..+++||.=.
T Consensus 128 ~~~~~iViDE 137 (337)
T 2z0m_A 128 SSFEIVIIDE 137 (337)
T ss_dssp GGCSEEEEES
T ss_pred hhCcEEEEEC
Confidence 7778777544
No 112
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=71.69 E-value=4.4 Score=34.86 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=45.4
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHH-HHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAE-IFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~-l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
+..|--.....+..++..........++||.|+++..++. +.+.+..... .+.+..++| +.....+...+.
T Consensus 58 GsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g---~~~~~~~~~~~~---- 130 (216)
T 3b6e_A 58 GSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSG---DTQLKISFPEVV---- 130 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC------CCCCHHHHH----
T ss_pred CCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeC---CcccchhHHhhc----
Confidence 4446666555555544332222346799999999998887 5555544321 277888887 433222111111
Q ss_pred CCccEEEEcC
Q psy4150 174 GEFNTLIATS 183 (395)
Q Consensus 174 g~~~vLVaT~ 183 (395)
+..+|+|+|.
T Consensus 131 ~~~~i~v~T~ 140 (216)
T 3b6e_A 131 KSCDIIISTA 140 (216)
T ss_dssp HHCSEEEEEH
T ss_pred cCCCEEEECH
Confidence 2478999984
No 113
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=68.04 E-value=19 Score=34.23 Aligned_cols=99 Identities=15% Similarity=0.159 Sum_probs=62.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|--...-.+...+.. ...+.++||.++++..+..+++.+...+. ...+..++| +.+... .+..+.
T Consensus 86 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~ 156 (414)
T 3eiq_A 86 SGTGKTATFAISILQQIEL---DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIG---GTNVRA---EVQKLQ 156 (414)
T ss_dssp SCSSSHHHHHHHHHHHCCT---TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCC---CTTHHH---HHHHHT
T ss_pred CCCcccHHHHHHHHHHHhh---cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEEC---CcchHH---HHHHHh
Confidence 4555776544334333321 12467899999999999998888876532 255666666 555443 345566
Q ss_pred cCCccEEEEcC-----cccc-CCCCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATS-----VGEE-GLDIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~~-GlDip~v~~VI~~d~ 202 (395)
.+..+|+|||. .+.. .+++..+++||.=.+
T Consensus 157 ~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEa 192 (414)
T 3eiq_A 157 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 192 (414)
T ss_dssp TTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSH
T ss_pred cCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECH
Confidence 78899999994 2333 356667787775443
No 114
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=61.42 E-value=8.5 Score=42.91 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=59.6
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.+..|.-...-.+...+.. +.++||.++|+..+...++.|.+.. ..+.+++| +.+ .++
T Consensus 208 TGSGKTlva~l~i~~~l~~------g~rvlvl~PtraLa~Q~~~~l~~~~--~~VglltG---d~~-----------~~~ 265 (1108)
T 3l9o_A 208 TSAGKTVVAEYAIAQSLKN------KQRVIYTSPIKALSNQKYRELLAEF--GDVGLMTG---DIT-----------INP 265 (1108)
T ss_dssp SSSHHHHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHT--SSEEEECS---SCB-----------CCC
T ss_pred CCCChHHHHHHHHHHHHhc------CCeEEEEcCcHHHHHHHHHHHHHHh--CCccEEeC---ccc-----------cCC
Confidence 4455765554444444332 5799999999999999999998877 47888999 665 346
Q ss_pred CccEEEEc-----CccccCCC-CCCCCEEEEcC
Q psy4150 175 EFNTLIAT-----SVGEEGLD-IGEIDLVICFD 201 (395)
Q Consensus 175 ~~~vLVaT-----~v~~~GlD-ip~v~~VI~~d 201 (395)
..+|+|+| +.+.+|-. +..+.+||.=.
T Consensus 266 ~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDE 298 (1108)
T 3l9o_A 266 DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDE 298 (1108)
T ss_dssp SCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEET
T ss_pred CCCEEEeChHHHHHHHHcCccccccCCEEEEhh
Confidence 78999999 34545433 55677777533
No 115
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=59.73 E-value=17 Score=37.65 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=63.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+..++... ......++||.++|+..+....+.+.+..+ .+++..++| +.+...+...+.
T Consensus 37 TGsGKTl~~~~~i~~~l~~~-~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g---~~~~~~~~~~~~--- 109 (696)
T 2ykg_A 37 TGCGKTFVSLLICEHHLKKF-PQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISG---ATAENVPVEQIV--- 109 (696)
T ss_dssp TTSSHHHHHHHHHHHHHHHS-CTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECS---SSCSSSCHHHHH---
T ss_pred CCchHHHHHHHHHHHHHHhC-ccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeC---CccccccHHHhc---
Confidence 45567766555555544431 111237899999999999988888877643 388999999 554332222221
Q ss_pred cCCccEEEEcC-----ccccC-C-CCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATS-----VGEEG-L-DIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~~G-l-Dip~v~~VI~~d~p 203 (395)
...+|+|||. .+..| + ++..+++||.=.+.
T Consensus 110 -~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH 146 (696)
T 2ykg_A 110 -ENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECH 146 (696)
T ss_dssp -HTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGG
T ss_pred -cCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCC
Confidence 2489999995 23333 3 67778888865443
No 116
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=58.55 E-value=15 Score=36.45 Aligned_cols=94 Identities=7% Similarity=0.043 Sum_probs=62.0
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|......++...... ...++||.|+++..+....+.+.+.+ +...+..++| +.+..++ .
T Consensus 137 tGsGKT~~~~~~~~~~~~~-----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~---~~~~~~~-------~ 201 (510)
T 2oca_A 137 TSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGG---GASKDDK-------Y 201 (510)
T ss_dssp STTTHHHHHHHHHHHHHHH-----CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGG---GCCTTGG-------G
T ss_pred CCCCHHHHHHHHHHHHHhC-----CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEec---CCccccc-------c
Confidence 4556777766666555432 23599999999999999999998763 3357788888 5554443 4
Q ss_pred cCCccEEEEcCc-cccC--CCCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATSV-GEEG--LDIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~v-~~~G--lDip~v~~VI~~d~p 203 (395)
.+..+|+|+|.- +... ..+..+++||.=...
T Consensus 202 ~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H 235 (510)
T 2oca_A 202 KNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECH 235 (510)
T ss_dssp CTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGG
T ss_pred ccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCc
Confidence 678999999942 2222 334556666654443
No 117
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=56.85 E-value=36 Score=27.01 Aligned_cols=51 Identities=14% Similarity=0.341 Sum_probs=43.5
Q ss_pred EEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 123 ~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
.+||..-......+...++..| +++..+.+ +.+...|.+-++.|.....+|
T Consensus 5 fvvfssdpeilkeivreikrqg--vrvvllys---dqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG--VRVVLLYS---DQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT--CEEEEEEC---CSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC--eEEEEEec---CchHHHHHHHHHHHHHcCCce
Confidence 4788888888888888888888 99999999 889999999999998765554
No 118
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=56.37 E-value=13 Score=38.79 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=60.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.+..|.-...-.+...+.. +.++|+.++++..+...++.+....+ ++++..++| +....++ ..
T Consensus 49 TGsGKT~~~~l~il~~~~~------~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G---~~~~~~~-------~~ 112 (702)
T 2p6r_A 49 TAAGKTLLAEMAMVREAIK------GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG---DYESRDE-------HL 112 (702)
T ss_dssp SHHHHHHHHHHHHHHHHHT------TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS---SCBCCSS-------CS
T ss_pred CccHHHHHHHHHHHHHHHh------CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC---CCCcchh-------hc
Confidence 3445666554333333322 47999999999999999998854322 378899999 5443322 23
Q ss_pred CCccEEEEcC-----ccccCCC-CCCCCEEEEcCC
Q psy4150 174 GEFNTLIATS-----VGEEGLD-IGEIDLVICFDA 202 (395)
Q Consensus 174 g~~~vLVaT~-----v~~~GlD-ip~v~~VI~~d~ 202 (395)
+..+|+|||+ ++..+.. +..+++||.=.+
T Consensus 113 ~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 113 GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTG
T ss_pred cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeee
Confidence 5789999995 4444444 667888886444
No 119
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=55.71 E-value=9.9 Score=30.14 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=29.1
Q ss_pred ccEEEEc-CcHHHHHHHHHHHcccCCCCceeEEeccCCCCC
Q psy4150 121 TKVIIFA-NYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160 (395)
Q Consensus 121 ~r~iVF~-~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~ 160 (395)
.++||+| .+-..+...+..|...| +.+..+.| ++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G--~~v~~l~G---G~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLG--VNVYQLEG---GYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTT--CCCEEETT---HHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcC--CceEEEeC---cHH
Confidence 7899999 57778889999999999 78888888 654
No 120
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=55.18 E-value=15 Score=36.87 Aligned_cols=99 Identities=19% Similarity=0.117 Sum_probs=58.2
Q ss_pred ccccHHHHHHH-HHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHccc-----C-CCCceeEEeccCCCCCHHHHHHH
Q psy4150 95 WSHLKFIRLRE-ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL-----E-PMVKASMFVGQSSGVTQQEQKEI 167 (395)
Q Consensus 95 ~~~~K~~~L~~-lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~-----~-~~~~~~~lhg~~~~~~~~~R~~~ 167 (395)
.+..|.-...- ++..............++||.++|+..+..+++.+... + +.+.+..++| +.+... .
T Consensus 120 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~ 193 (563)
T 3i5x_A 120 TGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG---GTDFRA---A 193 (563)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECT---TSCHHH---H
T ss_pred CCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEEC---CcCHHH---H
Confidence 45567765333 33333222111122458999999999999998888763 1 1245666666 655443 4
Q ss_pred HHHHhcCCccEEEEcCc-----ccc--CCCCCCCCEEEE
Q psy4150 168 MKKFRAGEFNTLIATSV-----GEE--GLDIGEIDLVIC 199 (395)
Q Consensus 168 l~~Fk~g~~~vLVaT~v-----~~~--GlDip~v~~VI~ 199 (395)
+..+..+..+|+|||.- +.. ...+..+++||.
T Consensus 194 ~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 232 (563)
T 3i5x_A 194 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232 (563)
T ss_dssp HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEE
Confidence 45566668899999952 112 124556666664
No 121
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=55.13 E-value=14 Score=37.59 Aligned_cols=99 Identities=19% Similarity=0.099 Sum_probs=58.6
Q ss_pred ccccHHHHHHHHHHHHHHh-hhccCCCccEEEEcCcHHHHHHHHHHHcccC------CCCceeEEeccCCCCCHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRL-HAEKGETTKVIIFANYRVVVAEIFDVLKPLE------PMVKASMFVGQSSGVTQQEQKEI 167 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~-~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~------~~~~~~~lhg~~~~~~~~~R~~~ 167 (395)
.+..|.-...-.+...+.. ........++||.++|+..+..+++.+.... +.+.+..++| +.+.. ..
T Consensus 69 TGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g---g~~~~---~~ 142 (579)
T 3sqw_A 69 TGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG---GTDFR---AA 142 (579)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECT---TSCHH---HH
T ss_pred CCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEEC---CccHH---HH
Confidence 4556776533333332222 1111224589999999999999988887631 2355666666 55544 34
Q ss_pred HHHHhcCCccEEEEcCc-----ccc--CCCCCCCCEEEE
Q psy4150 168 MKKFRAGEFNTLIATSV-----GEE--GLDIGEIDLVIC 199 (395)
Q Consensus 168 l~~Fk~g~~~vLVaT~v-----~~~--GlDip~v~~VI~ 199 (395)
+..+..+..+|+|||.- +.+ ...+..+++||.
T Consensus 143 ~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lVi 181 (579)
T 3sqw_A 143 MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181 (579)
T ss_dssp HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEE
Confidence 55566667899999952 222 234556666663
No 122
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=52.60 E-value=14 Score=40.35 Aligned_cols=100 Identities=20% Similarity=0.140 Sum_probs=59.4
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+..++... ....+.++||.|+|+..+..+.+.+.+..+ .+++..+|| +.+...+...+.
T Consensus 272 TGsGKTl~~~~~i~~~l~~~-~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G---~~~~~~~~~~~~--- 344 (936)
T 4a2w_A 272 TGSGKTFVSILICEHHFQNM-PAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISG---ENFSNVSVEKVI--- 344 (936)
T ss_dssp TTSCHHHHHHHHHHTTTTTC-CSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECC---C-----CCHHHH---
T ss_pred CCchHHHHHHHHHHHHHHhc-cccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEEC---CcchhhHHHHhc---
Confidence 44557665555554443320 011167899999999999988887776522 389999999 665554332222
Q ss_pred cCCccEEEEcCc-----cccC-C-CCCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATSV-----GEEG-L-DIGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~v-----~~~G-l-Dip~v~~VI~~d~ 202 (395)
+..+|+|||.- +..+ + .+..+++||.=.+
T Consensus 345 -~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEa 380 (936)
T 4a2w_A 345 -EDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDEC 380 (936)
T ss_dssp -HHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETG
T ss_pred -cCCCEEEecHHHHHHHHHcCccccccCCCEEEEECc
Confidence 24789999942 2222 3 5667888875443
No 123
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=50.67 E-value=9.7 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=30.5
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
..+.+++|+|.+-..+...+..|...| +.+..+.|
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G--~~v~~l~G 87 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLG--LNIVDVEG 87 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTT--CCEEEETT
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcC--CCEEEEcC
Confidence 346789999999999999999999999 78888887
No 124
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=49.34 E-value=10 Score=28.83 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=29.8
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.+.+++|+|.+-..+...+..|...| +.+..+.|
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G--~~v~~l~G 88 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNG--VNAVNVEG 88 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTT--CEEEEETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCC--CCEEEecc
Confidence 45789999999999999999999999 77777777
No 125
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=48.83 E-value=8.7 Score=29.83 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.+.+++|+|.+-..+...+..|.+.| +.+..+.|
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G--~~~~~l~G 88 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANG--IDAVNVEG 88 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTT--CEEEEETT
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcC--CCEEEecC
Confidence 45789999999888999999999999 88777776
No 126
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=46.97 E-value=9.7 Score=29.09 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=29.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.+.+++|+|.+-..+...+..|...| +.+..+.|
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G--~~v~~l~G 88 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANG--IDAVNVEG 88 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTT--CEEEEETT
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCC--CCeEEeCC
Confidence 45789999999988999999999999 77887777
No 127
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=45.15 E-value=20 Score=26.07 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=26.9
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+.+++|+|.+-..+...+..|.+.| +. +..+ |
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G--~~~v~~l-G 73 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMG--YTHVENA-G 73 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTT--CSSEEEE-E
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcC--CCCEEec-c
Confidence 45789999999888999999999988 65 4444 6
No 128
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=44.93 E-value=15 Score=38.45 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=59.5
Q ss_pred ccccHHHHH-HHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRL-REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L-~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-.. .-++...... +.++|+.++++..+..+++.+....+ ++++..++| +.+...+ .
T Consensus 48 TGsGKT~~~~l~il~~~~~~------~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G---~~~~~~~-------~ 111 (720)
T 2zj8_A 48 TASGKTLIAEIAMVHRILTQ------GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATG---DYDSKDE-------W 111 (720)
T ss_dssp GGGCHHHHHHHHHHHHHHHH------CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECS---CSSCCCG-------G
T ss_pred CccHHHHHHHHHHHHHHHhC------CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecC---CCCcccc-------c
Confidence 445576554 3333333322 57999999999999999998864221 288999999 5554332 1
Q ss_pred cCCccEEEEcC-----ccccCCC-CCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATS-----VGEEGLD-IGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~~GlD-ip~v~~VI~~d~ 202 (395)
.+..+|+|||+ ++..+.. +..+++||.=.+
T Consensus 112 ~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 112 LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETG
T ss_pred cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECC
Confidence 35789999996 3333333 567777775444
No 129
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=44.82 E-value=25 Score=37.90 Aligned_cols=71 Identities=8% Similarity=0.050 Sum_probs=50.4
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccC--CCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc------cccC---
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLE--PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV------GEEG--- 188 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~--~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v------~~~G--- 188 (395)
+.+++|.|+|+..|...++.+...+ -++++.++.| +++...|.... .++|+|+|+- +..+
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~G---G~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLP---GMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCT---TCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeC---CCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhc
Confidence 4689999999999887777665431 1288999999 88876654433 3899999962 2333
Q ss_pred ----CCCCCCCEEEE
Q psy4150 189 ----LDIGEIDLVIC 199 (395)
Q Consensus 189 ----lDip~v~~VI~ 199 (395)
++...+.++|.
T Consensus 186 ~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 186 SPEERVQRKLHYALV 200 (853)
T ss_dssp SGGGCCCCSCCEEEE
T ss_pred cHhHhcccCCcEEEE
Confidence 45567777774
No 130
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=44.72 E-value=26 Score=31.15 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=44.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.+..|-.....++... +.++||+|+++..+..+.+.+.+.+ +. +..++| +..
T Consensus 117 tG~GKT~~a~~~~~~~---------~~~~liv~P~~~L~~q~~~~~~~~~--~~~v~~~~g---~~~------------- 169 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIFG--EEYVGEFSG---RIK------------- 169 (237)
T ss_dssp SSTTHHHHHHHHHHHS---------CSCEEEEESSHHHHHHHHHHHGGGC--GGGEEEESS---SCB-------------
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEeCCHHHHHHHHHHHHhCC--CCeEEEEeC---CCC-------------
Confidence 3455776655554432 4789999999999999999998865 77 888888 432
Q ss_pred CCccEEEEc
Q psy4150 174 GEFNTLIAT 182 (395)
Q Consensus 174 g~~~vLVaT 182 (395)
...+|+|+|
T Consensus 170 ~~~~i~v~T 178 (237)
T 2fz4_A 170 ELKPLTVST 178 (237)
T ss_dssp CCCSEEEEE
T ss_pred CcCCEEEEe
Confidence 246788888
No 131
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=44.70 E-value=29 Score=37.35 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=50.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcc----cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc-c-----c---
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKP----LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV-G-----E--- 186 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~----~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v-~-----~--- 186 (395)
+..++|.|+|+.-|...++.+.. .| +++.++.| +++..+|.... .++|+|+|+- + .
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lg--l~v~~i~g---g~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m 192 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLG--LTVGLNLN---SMSKDEKREAY------AADITYSTNNELGFDYLRDNM 192 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTT--CCEEECCT---TSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcC--CeEEEEeC---CCCHHHHHHhc------CCCEEEECchhhhHHHHHHhh
Confidence 46899999999999888777654 35 89999999 89887765442 3799999961 1 1
Q ss_pred ----cCCCCCCCCEEEE
Q psy4150 187 ----EGLDIGEIDLVIC 199 (395)
Q Consensus 187 ----~GlDip~v~~VI~ 199 (395)
..+++..+.++|.
T Consensus 193 ~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 193 VLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hcchhhhcccCCCEEEE
Confidence 2356667777664
No 132
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=44.20 E-value=20 Score=37.39 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=61.0
Q ss_pred eccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC-CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 94 AWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP-MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 94 ~~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~-~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
..+..|.-.....+.+.+.. .+.++|+.++++..+...++.+....+ ++++..++| +....++ .
T Consensus 54 pTGsGKT~~~~l~il~~~~~-----~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G---~~~~~~~-------~ 118 (715)
T 2va8_A 54 PTGSGKTLIAEMGIISFLLK-----NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSG---DYDTDDA-------W 118 (715)
T ss_dssp CTTSCHHHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCS---CSSSCCG-------G
T ss_pred CCCCcHHHHHHHHHHHHHHH-----CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeC---CCCCchh-------h
Confidence 34566777665444443331 257999999999999999988753221 278888898 5544332 1
Q ss_pred cCCccEEEEcC-----ccccCCC-CCCCCEEEEcCC
Q psy4150 173 AGEFNTLIATS-----VGEEGLD-IGEIDLVICFDA 202 (395)
Q Consensus 173 ~g~~~vLVaT~-----v~~~GlD-ip~v~~VI~~d~ 202 (395)
.+..+|+|||+ .+..+.. +..+++||.=.+
T Consensus 119 ~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~ 154 (715)
T 2va8_A 119 LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDEL 154 (715)
T ss_dssp GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSG
T ss_pred cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEech
Confidence 23789999996 3344443 667888875444
No 133
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=43.74 E-value=87 Score=32.50 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=58.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEecc-----------------CC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ-----------------SS 157 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~-----------------~~ 157 (395)
..+.|--.+..++... ..++||.+++...|..|+..|....|.-.+.++-++ +.
T Consensus 37 tgs~kt~~~a~~~~~~---------~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~ 107 (664)
T 1c4o_A 37 TGTGKTVTMAKVIEAL---------GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEK 107 (664)
T ss_dssp TTSCHHHHHHHHHHHH---------TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECC
T ss_pred CCcHHHHHHHHHHHHh---------CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhh
Confidence 4566777777766543 357999999999999999999887654444444310 00
Q ss_pred CC--C---HHHHHHHHHHHhcCCccEEEEcCccccCC
Q psy4150 158 GV--T---QQEQKEIMKKFRAGEFNTLIATSVGEEGL 189 (395)
Q Consensus 158 ~~--~---~~~R~~~l~~Fk~g~~~vLVaT~v~~~Gl 189 (395)
.. + ...|..++..+..+.-.|+|+|-.+-.|+
T Consensus 108 ~~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 108 DASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred hcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 22 2 56799999999887766778774333453
No 134
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=42.71 E-value=14 Score=27.59 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=28.0
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.+++|+|.+-..+...+..|...| +.+..+.|
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G--~~v~~l~G 85 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG--YEAMSLEG 85 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT--CCEEEETT
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC--CcEEEEcc
Confidence 789999999988999999999999 66667777
No 135
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.70 E-value=1e+02 Score=24.36 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=42.8
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEE
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vL 179 (395)
--+||.+.-+..+..+.+.-++.| +.+..... ..+...|.+..+.|++...+|-
T Consensus 80 vvvivttddkewikdfieeakerg--vevfvvyn---nkdddrrkeaqqefrsdgvdvr 133 (162)
T 2l82_A 80 VVVIVTTDDKEWIKDFIEEAKERG--VEVFVVYN---NKDDDRRKEAQQEFRSDGVDVR 133 (162)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTT--CEEEEEEE---CSCHHHHHHHHHHHCCSSCEEE
T ss_pred EEEEEecCcHHHHHHHHHHHHhcC--cEEEEEec---CCCchhHHHHHHHhhhcCceee
Confidence 346677777888888888788888 88888888 8889999999999998655543
No 136
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=41.99 E-value=45 Score=32.47 Aligned_cols=80 Identities=11% Similarity=0.028 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.+..|......++... +.++||.|+++..+..+.+.+.+.+ +. +..+|| +.+
T Consensus 117 TGsGKT~~~l~~i~~~---------~~~~Lvl~P~~~L~~Q~~~~~~~~~--~~~v~~~~g---~~~------------- 169 (472)
T 2fwr_A 117 TGSGKTHVAMAAINEL---------STPTLIVVPTLALAEQWKERLGIFG--EEYVGEFSG---RIK------------- 169 (472)
T ss_dssp TTSCHHHHHHHHHHHH---------CSCEEEEESSHHHHHHHHHHGGGGC--GGGEEEBSS---SCB-------------
T ss_pred CCCCHHHHHHHHHHHc---------CCCEEEEECCHHHHHHHHHHHHhCC--CcceEEECC---CcC-------------
Confidence 4556777666555443 4799999999999999999999876 88 889998 543
Q ss_pred CCccEEEEcC-ccccCCC-C-CCCCEEEEcC
Q psy4150 174 GEFNTLIATS-VGEEGLD-I-GEIDLVICFD 201 (395)
Q Consensus 174 g~~~vLVaT~-v~~~GlD-i-p~v~~VI~~d 201 (395)
...+|+|+|. .+..-++ + ..+++||.=.
T Consensus 170 ~~~~Ivv~T~~~l~~~~~~~~~~~~liIvDE 200 (472)
T 2fwr_A 170 ELKPLTVSTYDSAYVNAEKLGNRFMLLIFDE 200 (472)
T ss_dssp CCCSEEEEEHHHHHHTHHHHTTTCSEEEEET
T ss_pred CcCCEEEEEcHHHHHHHHHhcCCCCEEEEEC
Confidence 2468899984 2222221 1 2366776533
No 137
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=41.91 E-value=31 Score=32.56 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=57.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|.-...-.+...+.. .....++||.++|+..+..+++.+.+.+ +.+.+...+| +.... ..
T Consensus 73 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------~~ 139 (412)
T 3fht_A 73 SGTGKTAAFVLAMLSQVEP---ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVR---GNKLE-------RG 139 (412)
T ss_dssp TTSCHHHHHHHHHHHHCCT---TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECT---TCCCC-------TT
T ss_pred CCchHHHHHHHHHHHHhhh---cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeec---Ccchh-------hh
Confidence 4556776543333333221 1345589999999999999987776643 3466777776 22211 11
Q ss_pred hcCCccEEEEcCcc------c-cCCCCCCCCEEEEcCC
Q psy4150 172 RAGEFNTLIATSVG------E-EGLDIGEIDLVICFDA 202 (395)
Q Consensus 172 k~g~~~vLVaT~v~------~-~GlDip~v~~VI~~d~ 202 (395)
.....+|+|||.-. . ..+++..+++||.=.+
T Consensus 140 ~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 140 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 24467899999521 1 3566678888885443
No 138
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=41.50 E-value=98 Score=28.61 Aligned_cols=95 Identities=9% Similarity=0.140 Sum_probs=59.8
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-...-.+...+.. ...+.++||.|+++..+..+++.+.+.+. .+.+..++| +.... ..
T Consensus 53 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~---~~~~~--------~~ 118 (395)
T 3pey_A 53 SGTGKTAAFSLTMLTRVNP---EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP---DSFEK--------NK 118 (395)
T ss_dssp TTSCHHHHHHHHHHHHCCT---TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEST---TSSCT--------TS
T ss_pred CCCcHHHHHHHHHHHHhcc---CCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEec---Cchhh--------hc
Confidence 4556776554444443321 13467999999999999999998887542 355666665 22111 12
Q ss_pred cCCccEEEEcCcc------ccCCCCCCCCEEEEcCCC
Q psy4150 173 AGEFNTLIATSVG------EEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 173 ~g~~~vLVaT~v~------~~GlDip~v~~VI~~d~p 203 (395)
....+|+|||.-. ...+++..+++||.=.+.
T Consensus 119 ~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 119 QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 3367899999521 345678888888865543
No 139
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=40.99 E-value=27 Score=22.73 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=21.2
Q ss_pred hhhhccchhhhhHHHHHHHHhhhhchhhHHHHHhhh
Q psy4150 330 KKTKKQPMMTQSNDIRTCFENITKKKKTFIDFLTQS 365 (395)
Q Consensus 330 ~~~~~~~m~~a~~~l~~~fe~a~~~rd~~~~~~~~~ 365 (395)
|..+++...+..++-++.-.-.|.|||+|.+|..+.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333444333333333322266799999999998765
No 140
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=40.87 E-value=1.2e+02 Score=23.16 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=25.4
Q ss_pred ccEEEEcC------cHHHHHHHHHHHcccCCCCceeEEe
Q psy4150 121 TKVIIFAN------YRVVVAEIFDVLKPLEPMVKASMFV 153 (395)
Q Consensus 121 ~r~iVF~~------t~~~ae~l~~~L~~~~~~~~~~~lh 153 (395)
.+++||+. ++..|.....+|.+.+ +....+.
T Consensus 18 ~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~g--i~~~~~d 54 (109)
T 3ipz_A 18 EKVVLFMKGTRDFPMCGFSNTVVQILKNLN--VPFEDVN 54 (109)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTT--CCCEEEE
T ss_pred CCEEEEEecCCCCCCChhHHHHHHHHHHcC--CCcEEEE
Confidence 78999998 4999999999999998 5554443
No 141
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=40.65 E-value=24 Score=27.24 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=29.2
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
..+.+++|+|.+-..+...+..|...| +....+.|
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G--~~~~~l~G 88 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELG--YTPYYLEG 88 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTT--CCCEEEES
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCC--CCEEEecC
Confidence 346789999999999999999999998 65566777
No 142
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=39.92 E-value=66 Score=29.52 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=40.5
Q ss_pred CCccEEEEcC---------------------cHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 119 ETTKVIIFAN---------------------YRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 119 ~~~r~iVF~~---------------------t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
+.+-+|||.| +...++.|.+.|...| +.+.. +. +++..+-.+++++|..
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LG--F~V~~-~~---dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELH--FEIKP-HD---DCTVEQIYEILKIYQL 85 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCC--CEEEE-Ee---CCCHHHHHHHHHHHHH
Confidence 4567889887 4567999999999999 88654 44 7999999999999976
No 143
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=39.79 E-value=16 Score=28.04 Aligned_cols=34 Identities=9% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+..+||+|.+-..+...+..|...| +. +..+.|
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G--~~~v~~l~G 85 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAG--FEHVSELKG 85 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTT--CSCEEECTT
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcC--CcCEEEecC
Confidence 35789999999999999999999998 64 666766
No 144
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=38.71 E-value=42 Score=36.40 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=50.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcc----cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc------ccc--
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKP----LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV------GEE-- 187 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~----~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v------~~~-- 187 (395)
+.+++|-|+|+.-|...++.+.. .| +++.++.| +++..+|.... .++|+++|+- +..
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lG--Lsv~~i~g---g~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLG--LQVGVILA---TMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTT--CCEEECCT---TCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcC--CeEEEEeC---CCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 46899999999998877776654 35 89999999 89887766543 3799999962 122
Q ss_pred -----CCCCCCCCEEEE
Q psy4150 188 -----GLDIGEIDLVIC 199 (395)
Q Consensus 188 -----GlDip~v~~VI~ 199 (395)
.+++..+.++|.
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 355667777764
No 145
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=38.55 E-value=48 Score=36.38 Aligned_cols=69 Identities=22% Similarity=0.166 Sum_probs=46.9
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.+..|.-...-.+..... .+.++||.++++..+..+++.|.+..+.+.+..++| +.+ ..+
T Consensus 63 TGsGKTlv~~~~i~~~~~------~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G---~~~-----------~~~ 122 (997)
T 4a4z_A 63 TSAGKTVVAEYAIAMAHR------NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITG---DVQ-----------INP 122 (997)
T ss_dssp TTSCSHHHHHHHHHHHHH------TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECS---SCE-----------ECT
T ss_pred CCCcHHHHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeC---CCc-----------cCC
Confidence 455576543333333322 257899999999999999999998765589999999 553 234
Q ss_pred CccEEEEcC
Q psy4150 175 EFNTLIATS 183 (395)
Q Consensus 175 ~~~vLVaT~ 183 (395)
..+|+|+|+
T Consensus 123 ~~~IlV~Tp 131 (997)
T 4a4z_A 123 DANCLIMTT 131 (997)
T ss_dssp TSSEEEEEH
T ss_pred CCCEEEECH
Confidence 567777774
No 146
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=38.39 E-value=1.3e+02 Score=23.24 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=30.1
Q ss_pred CccEEEEc------CcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHH
Q psy4150 120 TTKVIIFA------NYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI 167 (395)
Q Consensus 120 ~~r~iVF~------~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~ 167 (395)
..+++||+ +++..|.....+|.+.| +....+.= ..+...+..+
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~g--i~y~~~di---~~d~~~~~~l 63 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHN--IQFSSFDI---FSDEEVRQGL 63 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTT--CCCEEEEG---GGCHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcC--CCeEEEEC---cCCHHHHHHH
Confidence 37999999 57889999999999988 55554443 3344444443
No 147
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=37.73 E-value=52 Score=32.71 Aligned_cols=95 Identities=15% Similarity=0.108 Sum_probs=54.3
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.+..|-....-.+...+.. .....++||.++++..+..+++.+.+.+.........+.+ +.... -...
T Consensus 167 TGsGKT~~~~~~il~~l~~---~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~ 234 (508)
T 3fho_A 167 SGTGKTAAFALTMLSRVDA---SVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIK-DSVPK--------GAKI 234 (508)
T ss_dssp SSTTSHHHHHHHHHHHSCT---TCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC-------------------CC
T ss_pred CCccHHHHHHHHHHHHHHh---CCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeC-Ccccc--------cccC
Confidence 4555776544333333322 1335689999999999999999988765323222222211 11111 1133
Q ss_pred CccEEEEcCc------cccCCCCCCCCEEEEcC
Q psy4150 175 EFNTLIATSV------GEEGLDIGEIDLVICFD 201 (395)
Q Consensus 175 ~~~vLVaT~v------~~~GlDip~v~~VI~~d 201 (395)
..+|+|||.- ....+++..+++||.=.
T Consensus 235 ~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDE 267 (508)
T 3fho_A 235 DAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDE 267 (508)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEECC
T ss_pred CCCEEEECHHHHHHHHHcCCccccCCCEEEEec
Confidence 6899999942 12356788888888644
No 148
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=37.01 E-value=70 Score=34.92 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=51.9
Q ss_pred CccEEEEcCcHHHHHHHHHHHcc----cCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc------cccC-
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKP----LEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV------GEEG- 188 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~----~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v------~~~G- 188 (395)
+.+++|.|+|+.-|...++.+.. .| +++.++.| +++..+|.... .++|+|+|+- +..+
T Consensus 120 G~qv~VvTPTreLA~Qdae~m~~l~~~lG--Lsv~~i~G---g~~~~~r~~ay------~~DIvyGTpgrlgfDyLrd~m 188 (997)
T 2ipc_A 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLG--LSVGVIQH---ASTPAERRKAY------LADVTYVTNSELGFDYLRDNM 188 (997)
T ss_dssp CSCCEEEESSHHHHHHHHHHHHHHHHTTT--CCEEECCT---TCCHHHHHHHH------TSSEEEEEHHHHHHHHHHHTS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcC--CeEEEEeC---CCCHHHHHHHc------CCCEEEECchhhhhHHHHHhh
Confidence 46899999999988877766654 45 89999999 89887766654 3899999952 1233
Q ss_pred ------CCCC---CCCEEEEcCC
Q psy4150 189 ------LDIG---EIDLVICFDA 202 (395)
Q Consensus 189 ------lDip---~v~~VI~~d~ 202 (395)
+++. .+.++|.-..
T Consensus 189 ~~~~~~l~~r~d~~l~~lIIDEa 211 (997)
T 2ipc_A 189 AISPDQLVLRHDHPLHYAIIDEV 211 (997)
T ss_dssp CSSTTTCCSCSSSSSCEEEETTH
T ss_pred hcchhhcccccCCCcceEEEech
Confidence 4555 6777765433
No 149
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=36.37 E-value=44 Score=36.73 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=58.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.+..|.-...-.+...+. .+.++||.++++..+...+..|.+.. -.+..++| +.+. ..
T Consensus 110 TGSGKTlva~lai~~~l~------~g~rvL~l~PtkaLa~Q~~~~l~~~~--~~vglltG---d~~~-----------~~ 167 (1010)
T 2xgj_A 110 TSAGKTVVAEYAIAQSLK------NKQRVIYTSPIKALSNQKYRELLAEF--GDVGLMTG---DITI-----------NP 167 (1010)
T ss_dssp TTSCHHHHHHHHHHHHHH------TTCEEEEEESSHHHHHHHHHHHHHHH--SCEEEECS---SCEE-----------CT
T ss_pred CCCChHHHHHHHHHHHhc------cCCeEEEECChHHHHHHHHHHHHHHh--CCEEEEeC---CCcc-----------CC
Confidence 455576654433333333 25799999999999999999888776 37788888 5542 23
Q ss_pred CccEEEEcC-----ccccC-CCCCCCCEEEEcCC
Q psy4150 175 EFNTLIATS-----VGEEG-LDIGEIDLVICFDA 202 (395)
Q Consensus 175 ~~~vLVaT~-----v~~~G-lDip~v~~VI~~d~ 202 (395)
..+|+|+|. .+.+| ..+..+.+||.=.+
T Consensus 168 ~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEa 201 (1010)
T 2xgj_A 168 DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEV 201 (1010)
T ss_dssp TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETG
T ss_pred CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEech
Confidence 578999996 33344 55677888885443
No 150
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=33.70 E-value=2.4e+02 Score=24.63 Aligned_cols=78 Identities=3% Similarity=0.013 Sum_probs=51.7
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCC-------CCCHHHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSS-------GVTQQEQKEIM 168 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~-------~~~~~~R~~~l 168 (395)
...-.+..+++..+.... ..-..++|.+.+-.++..+.+.+ .+ ++..++..+.+ .|+++. .
T Consensus 24 G~eNT~~tl~la~era~e----~~Ik~iVVAS~sG~TA~k~~e~~--~~--i~lVvVTh~~GF~~pg~~e~~~e~----~ 91 (201)
T 1vp8_A 24 GRENTEETLRLAVERAKE----LGIKHLVVASSYGDTAMKALEMA--EG--LEVVVVTYHTGFVREGENTMPPEV----E 91 (201)
T ss_dssp SGGGHHHHHHHHHHHHHH----HTCCEEEEECSSSHHHHHHHHHC--TT--CEEEEEECCTTSSSTTCCSSCHHH----H
T ss_pred CcccHHHHHHHHHHHHHH----cCCCEEEEEeCCChHHHHHHHHh--cC--CeEEEEeCcCCCCCCCCCcCCHHH----H
Confidence 344556666666554443 23578999999999999999987 34 55555543332 566554 4
Q ss_pred HHHhcCCccEEEEcCcc
Q psy4150 169 KKFRAGEFNTLIATSVG 185 (395)
Q Consensus 169 ~~Fk~g~~~vLVaT~v~ 185 (395)
+.++.....|+.+|-++
T Consensus 92 ~~L~~~G~~V~t~tH~l 108 (201)
T 1vp8_A 92 EELRKRGAKIVRQSHIL 108 (201)
T ss_dssp HHHHHTTCEEEECCCTT
T ss_pred HHHHhCCCEEEEEeccc
Confidence 55666778888888664
No 151
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=33.52 E-value=11 Score=33.43 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=31.3
Q ss_pred HHHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccc
Q psy4150 25 IQRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKED 61 (395)
Q Consensus 25 lead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~ 61 (395)
.|+|.+.+++|...+..+... ...+.+.||||++..+
T Consensus 183 DEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~ 221 (242)
T 3fe2_A 183 DEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 221 (242)
T ss_dssp TTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHH
T ss_pred eCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHH
Confidence 499999999999988888775 4578999999998766
No 152
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=33.46 E-value=22 Score=29.13 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=29.3
Q ss_pred CCccEEEEcCcH--HHHHHHHHHHcccCCCCceeEEec
Q psy4150 119 ETTKVIIFANYR--VVVAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~--~~ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.+.++||+|.+- ..+...+..|...| +.+..+.|
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G--~~v~~l~G 106 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLG--FRVKELIG 106 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTT--CEEEEEES
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCC--CeEEEeCC
Confidence 357899999997 58888999999999 78888888
No 153
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=32.88 E-value=20 Score=28.63 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGVT 160 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~~ 160 (395)
.+.++||+|.+-..+...+..|...| +. +..+.| ++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G--~~~v~~l~G---G~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAG--FTGVKDIVG---GYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHH--CCSEEEEEC---CHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcC--CCCeEEeCC---cHH
Confidence 45789999999888999999999988 64 777888 653
No 154
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=32.56 E-value=1.3e+02 Score=29.92 Aligned_cols=107 Identities=10% Similarity=-0.008 Sum_probs=65.1
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccC----CCC-----CHHHHHH
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS----SGV-----TQQEQKE 166 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~----~~~-----~~~~R~~ 166 (395)
.+.|--.+..++.. .+.++||.|++...|..|+..|....|.- +.++-+.. ... -..+|..
T Consensus 24 gs~ka~~~a~l~~~---------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~~~Rl~ 93 (483)
T 3hjh_A 24 GAACATLVAEIAER---------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLS 93 (483)
T ss_dssp TTHHHHHHHHHHHH---------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHH---------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHHHHHHH
Confidence 34455555555533 14689999999999999999998765432 44443310 011 1356889
Q ss_pred HHHHHhcCCccEEEEcCccccCCCCC-----CCCEEEEcCCCCChhhHhhh
Q psy4150 167 IMKKFRAGEFNTLIATSVGEEGLDIG-----EIDLVICFDAQKSPIKMVQR 212 (395)
Q Consensus 167 ~l~~Fk~g~~~vLVaT~v~~~GlDip-----~v~~VI~~d~p~s~~~yiQr 212 (395)
++..+..++..|+|+|--+-.+.=.| ...+.+..+-..+...+.++
T Consensus 94 ~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~ 144 (483)
T 3hjh_A 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 (483)
T ss_dssp HHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHH
Confidence 99999998888988884333222222 12455555555555555443
No 155
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=32.53 E-value=77 Score=28.47 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=47.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCC--CCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP--MVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~--~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
.+..|.-....++..+... ...++||.|+++..++...+.+.+.+. ...+..++| +.+... -.
T Consensus 137 tGsGKT~~~~~~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~---~~~~~~-------~~ 201 (282)
T 1rif_A 137 TSAGRSLIQALLARYYLEN-----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGG---GASKDD-------KY 201 (282)
T ss_dssp TTSCHHHHHHHHHHHHHHH-----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECST---TCSSTT-------CC
T ss_pred CCCCcHHHHHHHHHHHHHc-----CCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeC---CCcchh-------hh
Confidence 4556777766655554433 235899999999999999888877652 234555555 432211 12
Q ss_pred cCCccEEEEcC
Q psy4150 173 AGEFNTLIATS 183 (395)
Q Consensus 173 ~g~~~vLVaT~ 183 (395)
.+..+|+|+|.
T Consensus 202 ~~~~~I~v~T~ 212 (282)
T 1rif_A 202 KNDAPVVVGTW 212 (282)
T ss_dssp CTTCSEEEECH
T ss_pred ccCCcEEEEch
Confidence 25678999984
No 156
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=32.49 E-value=2.1e+02 Score=23.58 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccE
Q psy4150 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178 (395)
Q Consensus 99 K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~v 178 (395)
.....+.|+...+.. +.|++|.|.+...++.|-+.|=...| ...+=||..++-. .....|
T Consensus 24 ~~~~aCrL~~ka~~~------G~rv~V~~~d~~~a~~LD~~LW~~~~--~sFlPH~~~~~~~------------~~~~PV 83 (150)
T 3sxu_A 24 VEQLVCEIAAERWRS------GKRVLIACEDEKQAYRLDEALWARPA--ESFVPHNLAGEGP------------RGGAPV 83 (150)
T ss_dssp HHHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSST--TCCCCEEETTCSS------------TTCCSE
T ss_pred HHHHHHHHHHHHHHc------CCeEEEECCCHHHHHHHHHHHhCCCC--CcccCCccCCCCC------------CCCCCE
Confidence 677788888887764 78999999999999999999966542 1222344211211 134578
Q ss_pred EEEcCccccCCCCCCCCEEEEcCCC
Q psy4150 179 LIATSVGEEGLDIGEIDLVICFDAQ 203 (395)
Q Consensus 179 LVaT~v~~~GlDip~v~~VI~~d~p 203 (395)
+++++-.. .-+..+++||++.-
T Consensus 84 ~L~~~~~~---~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 84 EIAWPQKR---SSSRRDILISLRTS 105 (150)
T ss_dssp EEECTTSC---CCSCCSEEEECCSS
T ss_pred EEeCCCCC---CCCcCCEEEECCCC
Confidence 99875311 12346799999864
No 157
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=32.41 E-value=18 Score=27.75 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=28.9
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+.+++|+|.+-..+...+..|...| +. +..+.|
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G--~~~v~~l~G 91 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQG--YDVVYSIDG 91 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHT--CSSEEEETT
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcC--CceEEEecC
Confidence 46789999999888999999999998 64 667777
No 158
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=31.58 E-value=1e+02 Score=26.40 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=39.5
Q ss_pred CccEEEEcCc-----------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 120 TTKVIIFANY-----------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 120 ~~r~iVF~~t-----------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.+.+|||.|. ...++.|.+.|...| +.+.. +. +++..+-...+++|..
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~Lg--F~V~~-~~---dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG--YSVDV-KK---NLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCC--CEEEE-ec---CCCHHHHHHHHHHHHh
Confidence 3568888875 477999999999999 88764 44 7999999999999964
No 159
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=31.31 E-value=24 Score=28.33 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=28.7
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+.+++|+|.+-..+...+..|...| +. +..+.|
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G--~~~v~~l~G 124 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHG--YSNTSLYPG 124 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTT--CCSEEECTT
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcC--CCCeEEeCC
Confidence 46789999999989999999999998 64 666777
No 160
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=31.16 E-value=1.1e+02 Score=31.80 Aligned_cols=86 Identities=12% Similarity=0.165 Sum_probs=58.2
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEec-------------c-----C
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG-------------Q-----S 156 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg-------------~-----~ 156 (395)
..+.|--.+..++... ..++||.+++...|..|+..|....|.-.+.+|-+ . .
T Consensus 41 ~gs~k~~~~a~~~~~~---------~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~ 111 (661)
T 2d7d_A 41 TGTGKTFTVSNLIKEV---------NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEK 111 (661)
T ss_dssp TTSCHHHHHHHHHHHH---------CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECC
T ss_pred CCcHHHHHHHHHHHHh---------CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhh
Confidence 4566777666666543 35799999999999999999988765444544431 0 0
Q ss_pred ----CCCCHHHHHHHHHHHhcCCccEEEEcCccccCC
Q psy4150 157 ----SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGL 189 (395)
Q Consensus 157 ----~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~Gl 189 (395)
+.--...|..++..+..+.-.|+|+|-.+-.|+
T Consensus 112 ~~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l 148 (661)
T 2d7d_A 112 DASINDEIDKLRHSATSALFERRDVIIIASVSCIYGL 148 (661)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCB
T ss_pred hcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCC
Confidence 011156899999999877666777774433554
No 161
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=31.15 E-value=21 Score=28.68 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+.++||+|.+-..+...+..|...| +. +..+.|
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G--~~~v~~l~G 119 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMG--LKPVAHIEG 119 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHT--CCSEEEETT
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcC--CCCeEEecC
Confidence 35789999999888889999999998 65 777777
No 162
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.03 E-value=1.6e+02 Score=21.88 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=29.5
Q ss_pred ccEEEEc------CcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHH
Q psy4150 121 TKVIIFA------NYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMK 169 (395)
Q Consensus 121 ~r~iVF~------~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~ 169 (395)
.+++||+ +++..|..+..+|.+.+ +....+.= ..++..+..+..
T Consensus 17 ~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~--i~~~~vdi---~~~~~~~~~l~~ 66 (105)
T 2yan_A 17 ASVMLFMKGNKQEAKCGFSKQILEILNSTG--VEYETFDI---LEDEEVRQGLKA 66 (105)
T ss_dssp SSEEEEESBCSSSBCTTHHHHHHHHHHHHT--CCCEEEEG---GGCHHHHHHHHH
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHCC--CCeEEEEC---CCCHHHHHHHHH
Confidence 5799998 56788889999998888 65555544 334444444443
No 163
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=30.97 E-value=26 Score=28.61 Aligned_cols=33 Identities=12% Similarity=0.031 Sum_probs=27.5
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCC-ceeEEec
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMV-KASMFVG 154 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~-~~~~lhg 154 (395)
+.++||||.+-..+...+..|...| + .+..+.|
T Consensus 80 ~~~ivvyC~~G~rS~~aa~~L~~~G--~~~v~~l~G 113 (148)
T 2fsx_A 80 ERPVIFLCRSGNRSIGAAEVATEAG--ITPAYNVLD 113 (148)
T ss_dssp -CCEEEECSSSSTHHHHHHHHHHTT--CCSEEEETT
T ss_pred CCEEEEEcCCChhHHHHHHHHHHcC--CcceEEEcC
Confidence 5789999999888888999999998 7 4777777
No 164
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=30.59 E-value=1e+02 Score=28.70 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=40.1
Q ss_pred ccEEEEcCc-----------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 121 TKVIIFANY-----------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 121 ~r~iVF~~t-----------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.-+|||.|. ...++.|.+.|...| +.|.. +. +++..+-...+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LG--F~V~~-~~---dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLG--YSVDV-KK---NLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCC--CEEEE-ee---CCCHHHHHHHHHHHHh
Confidence 458999998 678999999999999 88664 44 7999999999999964
No 165
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=29.92 E-value=15 Score=29.18 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=28.4
Q ss_pred CCccEEEEcCcHHH--HHHHHHHHcccCCCCceeEEec
Q psy4150 119 ETTKVIIFANYRVV--VAEIFDVLKPLEPMVKASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~--ae~l~~~L~~~~~~~~~~~lhg 154 (395)
.+.++||+|.+-.. +...+..|...| +.+..+.|
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G--~~v~~l~G 105 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAG--FEAYELAG 105 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHT--CEEEEETT
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcC--CeEEEeCC
Confidence 46789999999776 788999999999 77777777
No 166
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=29.79 E-value=1.3e+02 Score=24.76 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=51.6
Q ss_pred CccEEEEcC--------------cHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC---CccEEEEc
Q psy4150 120 TTKVIIFAN--------------YRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG---EFNTLIAT 182 (395)
Q Consensus 120 ~~r~iVF~~--------------t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g---~~~vLVaT 182 (395)
.+.+|||.+ |...++.|.+.|...| +.+.. +. +++..+-.+.+++|... ..+++|+.
T Consensus 16 rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg--F~V~~-~~---dlt~~em~~~l~~~~~~dh~~~dc~vv~ 89 (146)
T 2dko_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK--YEVRN-KN---DLTREEIVELMRDVSKEDHSKRSSFVCV 89 (146)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred ceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCC--CEEEE-ee---CCCHHHHHHHHHHHHHhhcCCCCeEEEE
Confidence 456788866 4557899999999999 88654 44 79999999999999764 23343332
Q ss_pred CccccCCCCCCCCEEEEcCCCCChhhHhh
Q psy4150 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQ 211 (395)
Q Consensus 183 ~v~~~GlDip~v~~VI~~d~p~s~~~yiQ 211 (395)
+++-|.. ..|.-.|.+-+....+.
T Consensus 90 -ilSHG~~----g~i~g~D~~~~l~~i~~ 113 (146)
T 2dko_A 90 -LLSHGEE----GIIFGTNGPVDLKKITN 113 (146)
T ss_dssp -EESCEET----TEEEETTEEEEHHHHHH
T ss_pred -eccCCCC----CEEEEeCCcEeHHHHHH
Confidence 3334432 34444444334444443
No 167
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=28.94 E-value=16 Score=33.89 Aligned_cols=36 Identities=3% Similarity=-0.090 Sum_probs=29.8
Q ss_pred HHHHHHh-cchHHHHHHHHhC--CCcchhhhccccCccc
Q psy4150 26 QRDFHVT-HSLASALENLVTY--GLRSFYNNLVEVSKED 61 (395)
Q Consensus 26 ead~~~~-~~l~~~~~~L~~~--g~r~~~~fsatl~~~~ 61 (395)
|+|.+++ .+|...+..|... ...|++.||||++..+
T Consensus 243 Ead~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v 281 (300)
T 3fmo_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSV 281 (300)
T ss_dssp THHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHH
T ss_pred CHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHH
Confidence 9999998 7888888777765 3578999999999876
No 168
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=28.89 E-value=34 Score=31.59 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=49.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC----CccEEEEcCccccCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG----EFNTLIATSVGEEGL 189 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g----~~~vLVaT~v~~~Gl 189 (395)
+.+-+|||.++...++.|.+.|...| +.+.. +. +++..+-...+++|... ..+++|+. +++-|.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~Lg--F~V~~-~~---dlt~~em~~~l~~~~~~~dh~~~d~~v~~-ilSHG~ 109 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLG--YEVQK-FL---HLSMHGISQILGQFACMPEHRDYDSFVCV-LVSRGG 109 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHT--EEEEE-EE---SCBHHHHHHHHHHHHTCGGGGGCSEEEEE-EEEEEE
T ss_pred cceEEEEECCchHHHHHHHHHHHHCC--CEEEE-ee---CCCHHHHHHHHHHHHhccccCCCCEEEEE-EEcCCC
Confidence 35779999999999999999999999 87664 45 79999999999999763 34444433 344554
No 169
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=28.49 E-value=2.1e+02 Score=22.32 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.9
Q ss_pred ccEEEEcC------cHHHHHHHHHHHcccC
Q psy4150 121 TKVIIFAN------YRVVVAEIFDVLKPLE 144 (395)
Q Consensus 121 ~r~iVF~~------t~~~ae~l~~~L~~~~ 144 (395)
.+++||+. ++..|....++|.+.+
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g 49 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHG 49 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcC
Confidence 78999998 5999999999999988
No 170
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=28.39 E-value=23 Score=28.67 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=29.4
Q ss_pred CCCccEEEEcCcHHHHHHHHHHHcccCCCC-ceeEEec
Q psy4150 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMV-KASMFVG 154 (395)
Q Consensus 118 ~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~-~~~~lhg 154 (395)
..+.++||+|.+-..+...+..|...| + .+..+.|
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G--~~~v~~l~G 115 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYG--FKTIYNSEG 115 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHT--CSCEEEESS
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcC--CcceEEEcC
Confidence 346789999999888889999999998 7 4777777
No 171
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=28.26 E-value=31 Score=28.10 Aligned_cols=34 Identities=9% Similarity=0.255 Sum_probs=28.5
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEec
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVG 154 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg 154 (395)
.+..+||+|.+-..+...+..|...| +. +..+.|
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G--~~~v~~l~G 89 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAG--FEHVSELKG 89 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTT--CCSEEECTT
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcC--CCCEEEecC
Confidence 45789999999999999999999998 64 666767
No 172
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=28.24 E-value=1.2e+02 Score=29.40 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=57.5
Q ss_pred ccccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccC---CCCceeEEeccCCCCCHHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE---PMVKASMFVGQSSGVTQQEQKEIMKKF 171 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~---~~~~~~~lhg~~~~~~~~~R~~~l~~F 171 (395)
.+..|.....-.+...+.. .....++||.++|+..+..+++.+.+.+ +.+.+.+..|+. .+...
T Consensus 140 TGsGKT~~~~l~il~~l~~---~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------- 206 (479)
T 3fmp_B 140 SGTGKTAAFVLAMLSQVEP---ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN-KLERG--------- 206 (479)
T ss_dssp SSSSHHHHHHHHHHTTCCT---TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTC-CCCTT---------
T ss_pred CCCchhHHHHHHHHHHHhh---cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCc-ccccc---------
Confidence 4556776643333332221 1234489999999999999877665532 346666666632 22211
Q ss_pred hcCCccEEEEcCccc-------cCCCCCCCCEEEEcCC
Q psy4150 172 RAGEFNTLIATSVGE-------EGLDIGEIDLVICFDA 202 (395)
Q Consensus 172 k~g~~~vLVaT~v~~-------~GlDip~v~~VI~~d~ 202 (395)
.....+|+|||.-.- ..+++..+.+||.=.+
T Consensus 207 ~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 207 QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (479)
T ss_dssp CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCH
T ss_pred ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECH
Confidence 133568999995321 3678888998886544
No 173
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=28.19 E-value=1.6e+02 Score=24.66 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 130 RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 130 ~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
...++.|.+.|...| +.+.. +. +++..+-...+++|...
T Consensus 54 ~~D~~~L~~~f~~Lg--F~V~~-~~---dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEELH--FEIKP-HD---DCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC--CEEEE-ec---CCCHHHHHHHHHHHHHh
Confidence 567889999999999 88754 45 79999999999999653
No 174
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=27.31 E-value=1.7e+02 Score=25.16 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=39.9
Q ss_pred CccEEEEcCc--------------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 120 TTKVIIFANY--------------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 120 ~~r~iVF~~t--------------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.+.+|||.+. ...++.|.+.|...| +.+..+ . +++..+-...+++|...
T Consensus 44 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LG--F~V~~~-~---dlt~~em~~~l~~~~~~ 106 (179)
T 3p45_A 44 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG--FEVKCF-N---DLKAEELLLKIHEVSTV 106 (179)
T ss_dssp CCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTT--CEEEEE-E---SCCHHHHHHHHHHHHTS
T ss_pred cCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEEE-e---CCCHHHHHHHHHHHhhh
Confidence 4668998875 357899999999999 887654 4 79999999999999763
No 175
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=27.16 E-value=1.3e+02 Score=25.46 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=39.6
Q ss_pred CCccEEEEcCc--------------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 119 ETTKVIIFANY--------------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 119 ~~~r~iVF~~t--------------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
+.+.+|||.+. ...++.|.+.|...| +.+.. +. +++..+-...+++|..
T Consensus 32 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~Lg--F~V~~-~~---dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 32 PRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLG--YDVHV-LC---DQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTT--EEEEE-EE---SCCHHHHHHHHHHHHT
T ss_pred CceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCC--CEEEE-ee---CCCHHHHHHHHHHhhh
Confidence 45678888775 347899999999999 87754 45 7999999999999976
No 176
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=25.98 E-value=2.6e+02 Score=22.45 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=30.3
Q ss_pred ccEEEEcC------cHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHH
Q psy4150 121 TKVIIFAN------YRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIM 168 (395)
Q Consensus 121 ~r~iVF~~------t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l 168 (395)
.+++||+. ++..|..+..+|.+.+ +....+.= ..++..+..+.
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~g--v~y~~vdI---~~d~~~~~~L~ 83 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACG--ERFAYVDI---LQNPDIRAELP 83 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTC--SCCEEEEG---GGCHHHHHHHH
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcC--CceEEEEC---CCCHHHHHHHH
Confidence 68999987 6889999999999998 66555544 33444444433
No 177
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=25.71 E-value=66 Score=31.51 Aligned_cols=71 Identities=11% Similarity=0.223 Sum_probs=48.3
Q ss_pred cccHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 96 ~~~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
+..|.-....++..+... ....++||.|++ ..+....+.+.+..|..++..+|| +... ...+.
T Consensus 66 GlGKT~~ai~~i~~~~~~----~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v~~~~g---~~~~---------~~~~~ 128 (500)
T 1z63_A 66 GLGKTLQTIAVFSDAKKE----NELTPSLVICPL-SVLKNWEEELSKFAPHLRFAVFHE---DRSK---------IKLED 128 (500)
T ss_dssp TSCHHHHHHHHHHHHHHT----TCCSSEEEEECS-TTHHHHHHHHHHHCTTSCEEECSS---STTS---------CCGGG
T ss_pred CCcHHHHHHHHHHHHHhc----CCCCCEEEEccH-HHHHHHHHHHHHHCCCceEEEEec---Cchh---------ccccC
Confidence 445777666666665433 445799999995 466777788877777788888888 3321 12346
Q ss_pred ccEEEEcC
Q psy4150 176 FNTLIATS 183 (395)
Q Consensus 176 ~~vLVaT~ 183 (395)
.+|+|+|-
T Consensus 129 ~~ivi~t~ 136 (500)
T 1z63_A 129 YDIILTTY 136 (500)
T ss_dssp SSEEEEEH
T ss_pred CcEEEeeH
Confidence 78999883
No 178
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=25.26 E-value=2.2e+02 Score=23.53 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=47.9
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
.+.+-|.|.+...+..+.+.|...| +.+..+.+ +-. ...-.|.|+|--.+.|+.+ +.||.
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~g--i~~~~l~~---~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~ 120 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARG--EQVTLIQT---ENQ------------RLAPGVIVVPSFLAKGLEF---DAVIV 120 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTT--CCEEECSS---CC-------------CCCSSEEEEEGGGCTTCCE---EEEEE
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcC--Ccceeecc---ccc------------ccCCCeEEEEccccCCcCC---CEEEE
Confidence 5778899999999999999999888 76665554 211 1234689999999999886 56666
Q ss_pred cCCC
Q psy4150 200 FDAQ 203 (395)
Q Consensus 200 ~d~p 203 (395)
+++.
T Consensus 121 ~~~~ 124 (174)
T 3dmn_A 121 WNAN 124 (174)
T ss_dssp ETCB
T ss_pred ecCC
Confidence 6654
No 179
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=24.44 E-value=2.4e+02 Score=26.31 Aligned_cols=102 Identities=8% Similarity=0.105 Sum_probs=65.9
Q ss_pred CCccEEEEcCc------------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC----CccEEEEc
Q psy4150 119 ETTKVIIFANY------------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG----EFNTLIAT 182 (395)
Q Consensus 119 ~~~r~iVF~~t------------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g----~~~vLVaT 182 (395)
+.+-+|||.|. ...++.|.+.|...| +.+. ++. +++..+-.+++++|... ..+++|+.
T Consensus 60 ~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LG--F~V~-~~~---dlt~~em~~~l~~f~~~~h~~~~D~~vv~ 133 (316)
T 2fp3_A 60 NRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELN--FTIF-PYG---NVNQDQFFKLLTMVTSSSYVQNTECFVMV 133 (316)
T ss_dssp CSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTT--EEEE-EEC---SCCHHHHHHHHHHHHTSHHHHTCSCEEEE
T ss_pred CCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCC--CEEE-Ecc---CCCHHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 34678888875 277999999999999 8865 455 89999999999999652 34444332
Q ss_pred CccccCCCCCCCCEEEEcCCC-CChhhHhhhc-cccccc--cCceEEEE
Q psy4150 183 SVGEEGLDIGEIDLVICFDAQ-KSPIKMVQRL-GRTGRK--RNGRCVIL 227 (395)
Q Consensus 183 ~v~~~GlDip~v~~VI~~d~p-~s~~~yiQr~-GRagR~--~~g~~i~l 227 (395)
+++-|..+.+-+.|+-.|.. -+....++-. |.-... |.-+++++
T Consensus 134 -ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffi 181 (316)
T 2fp3_A 134 -LMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMF 181 (316)
T ss_dssp -EESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEE
T ss_pred -EccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEE
Confidence 35567665555667666654 3455555443 332232 44455444
No 180
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=24.17 E-value=1.9e+02 Score=26.34 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=51.9
Q ss_pred ccEEEEcCc-------------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC---CccEEEEcCc
Q psy4150 121 TKVIIFANY-------------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG---EFNTLIATSV 184 (395)
Q Consensus 121 ~r~iVF~~t-------------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g---~~~vLVaT~v 184 (395)
+-+|||.|. ...++.|.+.|...| +.+.. +. +++..+-.+.+++|... ..+++|+. +
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LG--F~V~~-~~---dlt~~em~~~l~~~~~~dh~~~d~~v~~-~ 105 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLG--FKVTV-FP---NLKSEEINKFIQQTAEMDHSDADCLLVA-V 105 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHTSCCTTEEEEEEE-E
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCC--CEEEE-ec---CcCHHHHHHHHHHHHHhhcCCCCEEEEE-E
Confidence 457777764 778999999999999 88754 44 79999999999999763 33343332 2
Q ss_pred cccCCCCCCCCEEEEcCCCCChhhHhh
Q psy4150 185 GEEGLDIGEIDLVICFDAQKSPIKMVQ 211 (395)
Q Consensus 185 ~~~GlDip~v~~VI~~d~p~s~~~yiQ 211 (395)
++-|. -+.|+-.|.+-+....+.
T Consensus 106 lsHG~----~~~i~~~D~~v~l~~i~~ 128 (272)
T 1m72_A 106 LTHGE----LGMLYAKDTHYKPDNLWY 128 (272)
T ss_dssp ESCEE----TTEEECSSSEECTTHHHH
T ss_pred cCCCC----CCEEEecCCcEEHHHHHH
Confidence 33343 134444444334444444
No 181
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=23.69 E-value=82 Score=32.92 Aligned_cols=67 Identities=15% Similarity=0.156 Sum_probs=47.3
Q ss_pred CccEEEEcCcHHHHHHHHHHHccc-CCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCc---cccCCCCCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPL-EPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSV---GEEGLDIGEID 195 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~-~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v---~~~GlDip~v~ 195 (395)
+.++||.++|+..|..+++.+.+. + ..+...+| +.. ..+..+|+|+|+- -...+++..++
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g--~~vg~~vG---~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~ 320 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHG--IDPNIRTG---VRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYD 320 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHS--CCCEEECS---SCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCS
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhC--CCeeEEEC---cEe-----------ccCCCCEEEECcHHHHhCCCcccCccc
Confidence 469999999999999998877543 4 55666777 432 4667889999862 23346666788
Q ss_pred EEEEcCC
Q psy4150 196 LVICFDA 202 (395)
Q Consensus 196 ~VI~~d~ 202 (395)
+||.=.+
T Consensus 321 ~lVlDEA 327 (666)
T 3o8b_A 321 IIICDEC 327 (666)
T ss_dssp EEEETTT
T ss_pred EEEEccc
Confidence 7775444
No 182
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.57 E-value=1.6e+02 Score=21.14 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=19.0
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccCCCCcee
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKAS 150 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~ 150 (395)
.+++|..........+...|...| +.+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g--~~v~ 29 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAG--FKVI 29 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTT--CEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCC--cEEE
Confidence 456777777777777777777666 5444
No 183
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=23.41 E-value=2.6e+02 Score=21.71 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=22.6
Q ss_pred ccEEEEcC------cHHHHHHHHHHHcccCCCCc
Q psy4150 121 TKVIIFAN------YRVVVAEIFDVLKPLEPMVK 148 (395)
Q Consensus 121 ~r~iVF~~------t~~~ae~l~~~L~~~~~~~~ 148 (395)
.+++||.. ++..|....++|.+.+ +.
T Consensus 16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g--v~ 47 (121)
T 3gx8_A 16 APVVLFMKGTPEFPKCGFSRATIGLLGNQG--VD 47 (121)
T ss_dssp CSEEEEESBCSSSBCTTHHHHHHHHHHHHT--BC
T ss_pred CCEEEEEeccCCCCCCccHHHHHHHHHHcC--CC
Confidence 78999998 4889999999999988 55
No 184
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=22.84 E-value=92 Score=33.01 Aligned_cols=78 Identities=13% Similarity=0.172 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHHHhhhccCCCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHH-------
Q psy4150 98 LKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK------- 170 (395)
Q Consensus 98 ~K~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~------- 170 (395)
.|.-..+.++..+... ....+++||.|+ ...+......+.+..|.+.+..+|| ............-
T Consensus 267 GKT~~ai~~i~~l~~~---~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~v~~~~g---~~~~r~~~~~~~~~~~~~~~ 339 (800)
T 3mwy_W 267 GKTVQTVAFISWLIFA---RRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLNCICYMG---NQKSRDTIREYEFYTNPRAK 339 (800)
T ss_dssp STTHHHHHHHHHHHHH---HSCCSCEEEECC-TTTHHHHHHHHHHHSTTCCEEECCC---SSHHHHHHHHHHSCSCC---
T ss_pred chHHHHHHHHHHHHHh---cCCCCCEEEEEC-chHHHHHHHHHHHHCCCceEEEEeC---CHHHHHHHHHHHhhcccccc
Confidence 3555555555443322 134578999999 5556667777777777788998888 4433322222211
Q ss_pred -HhcCCccEEEEc
Q psy4150 171 -FRAGEFNTLIAT 182 (395)
Q Consensus 171 -Fk~g~~~vLVaT 182 (395)
-..+.++|+|+|
T Consensus 340 ~~~~~~~dvvitT 352 (800)
T 3mwy_W 340 GKKTMKFNVLLTT 352 (800)
T ss_dssp --CCCCCSEEEEC
T ss_pred ccccccCCEEEec
Confidence 133567899988
No 185
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=22.83 E-value=1.9e+02 Score=25.83 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=45.4
Q ss_pred CccEEEEcC--------------cHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC---CccEEEEc
Q psy4150 120 TTKVIIFAN--------------YRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG---EFNTLIAT 182 (395)
Q Consensus 120 ~~r~iVF~~--------------t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g---~~~vLVaT 182 (395)
.+-+|||.| +...++.|.+.|+..| +.+.. +. +++..+-.+.+++|... ..+++|+.
T Consensus 16 rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~Lg--F~V~~-~~---dlt~~em~~~l~~~~~~~~~~~d~~v~~ 89 (250)
T 2j32_A 16 MGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLK--YEVRN-KN---DLTREEIVELMRDVSKEDHSKRSSFVCV 89 (250)
T ss_dssp EEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCC--CEEEE-Ee---CCCHHHHHHHHHHHHHhhccCCCEEEEE
Confidence 355788877 3447999999999999 88754 45 79999999999999764 24444433
Q ss_pred CccccCC
Q psy4150 183 SVGEEGL 189 (395)
Q Consensus 183 ~v~~~Gl 189 (395)
+++-|.
T Consensus 90 -~lsHG~ 95 (250)
T 2j32_A 90 -LLSHGE 95 (250)
T ss_dssp -EESCEE
T ss_pred -ECCCCC
Confidence 344554
No 186
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=22.69 E-value=31 Score=27.62 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=28.7
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCc-eeEEeccCCCC
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVK-ASMFVGQSSGV 159 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~-~~~lhg~~~~~ 159 (395)
+.+++|+|.+-..+...+..|...| +. +..+.| ++
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G--~~~v~~l~G---G~ 109 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNG--FKSAYAIKD---GA 109 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHT--CSEEEECTT---TT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcC--CcceEEecC---Cc
Confidence 5789999999888888899999988 74 666767 66
No 187
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=22.68 E-value=1.6e+02 Score=29.61 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=47.6
Q ss_pred ccccHHHHHHHHHHHHHHh-hhc--cCCCccEEEEcCcHHHHHHHH-HHHcccCCCCceeEEeccCCCCCHHHHHHHHHH
Q psy4150 95 WSHLKFIRLREILESHFRL-HAE--KGETTKVIIFANYRVVVAEIF-DVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKK 170 (395)
Q Consensus 95 ~~~~K~~~L~~lL~~~~~~-~~~--~~~~~r~iVF~~t~~~ae~l~-~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~ 170 (395)
.+..|.-....++..+... |.. .....++||.|+++..++.+. +.+...+ ..+..+++ +.
T Consensus 207 TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~--~~~~~~~~---~~----------- 270 (590)
T 3h1t_A 207 TGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPFG--DARHKIEG---GK----------- 270 (590)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTTC--SSEEECCC----------------
T ss_pred CCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhcc--hhhhhhhc---cC-----------
Confidence 4566877777666665543 100 014689999999999999888 7777666 34444443 21
Q ss_pred HhcCCccEEEEcCc-ccc---------CCCCCCCCEEEEcCCCC
Q psy4150 171 FRAGEFNTLIATSV-GEE---------GLDIGEIDLVICFDAQK 204 (395)
Q Consensus 171 Fk~g~~~vLVaT~v-~~~---------GlDip~v~~VI~~d~p~ 204 (395)
..+..+|+|+|.- +.. .+....+++||.=.+..
T Consensus 271 -~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~ 313 (590)
T 3h1t_A 271 -VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHR 313 (590)
T ss_dssp -CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-
T ss_pred -CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcc
Confidence 2456789999943 221 23445677887655543
No 188
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=22.53 E-value=1.7e+02 Score=26.72 Aligned_cols=48 Identities=8% Similarity=0.069 Sum_probs=39.6
Q ss_pred CccEEEEcCc--------------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhc
Q psy4150 120 TTKVIIFANY--------------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRA 173 (395)
Q Consensus 120 ~~r~iVF~~t--------------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~ 173 (395)
.+-+|||.|. ...++.|.+.|...| +.|.. +. +++..+-.+.+++|..
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LG--F~V~~-~~---dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLG--FEVKC-FN---DLKAEELLLKIHEVST 82 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTT--CEEEE-EE---SCCHHHHHHHHHHHHH
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCC--CEEEE-ec---CCCHHHHHHHHHHHHh
Confidence 4568998885 367999999999999 88664 45 7999999999999975
No 189
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=22.33 E-value=20 Score=31.14 Aligned_cols=36 Identities=6% Similarity=-0.033 Sum_probs=29.3
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccc
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKED 61 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~ 61 (395)
|+|.+...+|...+..+... ...+.+.+|||++..+
T Consensus 175 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~ 212 (228)
T 3iuy_A 175 EADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTV 212 (228)
T ss_dssp CHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHH
T ss_pred CHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHH
Confidence 99999999998887776654 3578899999998765
No 190
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense} SCOP: d.58.5.1 PDB: 3o5t_B*
Probab=21.99 E-value=49 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=20.3
Q ss_pred CChhhHhhhccccccccCceEEEEEe
Q psy4150 204 KSPIKMVQRLGRTGRKRNGRCVILLT 229 (395)
Q Consensus 204 ~s~~~yiQr~GRagR~~~g~~i~l~~ 229 (395)
.....-+...+|+|..|+|.++++-.
T Consensus 71 ~~vv~~I~~~~~tg~~GdGkIfV~~v 96 (112)
T 3mhy_A 71 EQVVEAIQKAANTGRIGDGKIFVLDI 96 (112)
T ss_dssp HHHHHHHHHHHCCSSTTCCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEEEh
Confidence 35667788889999999999887643
No 191
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.40 E-value=2.6e+02 Score=20.80 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCccEEEEcCc--HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHh
Q psy4150 100 FIRLREILESHFRLHAEKGETTKVIIFANY--RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFR 172 (395)
Q Consensus 100 ~~~L~~lL~~~~~~~~~~~~~~r~iVF~~t--~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk 172 (395)
-..+.+++...- ..+.+.+||++. ...+..+...-++.| +...++.+ .++++-.+.++.|-
T Consensus 37 sqdirdiiksmk------dngkplvvfvngasqndvnefqneakkeg--vsydvlks----tdpeeltqrvrefl 99 (112)
T 2lnd_A 37 SQDIRDIIKSMK------DNGKPLVVFVNGASQNDVNEFQNEAKKEG--VSYDVLKS----TDPEELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHHT------TCCSCEEEEECSCCHHHHHHHHHHHHHHT--CEEEEEEC----CCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH------hcCCeEEEEecCcccccHHHHHHHHHhcC--cchhhhcc----CCHHHHHHHHHHHH
Confidence 344556665543 236788899884 566777777777777 66666665 56777666667664
No 192
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=21.21 E-value=1.3e+02 Score=27.24 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=45.8
Q ss_pred ccEEEEcCc-------------HHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC---CccEEEEcCc
Q psy4150 121 TKVIIFANY-------------RVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG---EFNTLIATSV 184 (395)
Q Consensus 121 ~r~iVF~~t-------------~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g---~~~vLVaT~v 184 (395)
+-+|||.|. ...++.|.+.|...| +.+.. +. +++..+-.+.+++|..- ..+++|+. +
T Consensus 21 g~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LG--F~V~~-~~---dlt~~em~~~l~~~~~~~h~~~d~~v~~-~ 93 (259)
T 3sir_A 21 GMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLD--FEVTV-YK---DCRYKDILRTIEYSASQNHSDSDCILVA-I 93 (259)
T ss_dssp EEEEEEEECCC-----------CCHHHHHHHHHHHTT--CEEEE-EE---ECSHHHHHHHHHHHHTSCCTTEEEEEEE-E
T ss_pred cEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCC--CEEEE-Ee---CCCHHHHHHHHHHHHHhhccCCCEEEEE-E
Confidence 446777663 356899999999999 88654 44 79999999999999863 34455443 5
Q ss_pred cccCCC
Q psy4150 185 GEEGLD 190 (395)
Q Consensus 185 ~~~GlD 190 (395)
++-|..
T Consensus 94 lsHG~~ 99 (259)
T 3sir_A 94 LSHGEM 99 (259)
T ss_dssp EECTTC
T ss_pred ecCCCC
Confidence 666665
No 193
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=21.16 E-value=29 Score=34.80 Aligned_cols=65 Identities=8% Similarity=0.102 Sum_probs=47.6
Q ss_pred CccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCCccEEEEcCccccCCCCCCCCEEEE
Q psy4150 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199 (395)
Q Consensus 120 ~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~~~vLVaT~v~~~GlDip~v~~VI~ 199 (395)
+.+|||.|.+...++.|.+.|.+.+ +.+....+ .. .+..| .|.|+..-++.|.-+|+..++|.
T Consensus 382 ~~rVvi~a~s~~r~erL~~~L~~~~--i~~~~~~~----~~---------~~~~g--~v~i~~g~L~~GF~~p~~klaVI 444 (483)
T 3hjh_A 382 DGPVVFSVESEGRREALGELLARIK--IAPQRIMR----LD---------EASDR--GRYLMIGAAEHGFVDTVRNLALI 444 (483)
T ss_dssp CSCEEEEESCSSTTTTTHHHHGGGT--CCCEECSC----GG---------GCCTT--CEEEEESCCCSCEEETTTTEEEE
T ss_pred CCeEEEEeCChHHHHHHHHHHHHcC--CCceecCc----hh---------hcCCC--cEEEEEcccccCcccCCCCEEEE
Confidence 4799999999999999999999988 66544322 11 12334 45556667899999998888876
Q ss_pred cC
Q psy4150 200 FD 201 (395)
Q Consensus 200 ~d 201 (395)
-+
T Consensus 445 TE 446 (483)
T 3hjh_A 445 CE 446 (483)
T ss_dssp EH
T ss_pred Ec
Confidence 43
No 194
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=20.85 E-value=2.7e+02 Score=24.26 Aligned_cols=50 Identities=14% Similarity=-0.030 Sum_probs=36.4
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g 174 (395)
.++.+.|++++-..+++..+.|.+.++.-++.++- .+.++.++-..+..+
T Consensus 25 rD~~iyVla~~qrd~~W~rQ~L~k~~~~e~~~Vi~------~~~e~~~i~~~L~~~ 74 (197)
T 3gr0_A 25 RDKMLYVAAQNERDTLWARQVLARGDYDKNARVIN------ENEENKRISIWLDTY 74 (197)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHHTCTTTEEEEC------HHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEccccHHHHHHHHHHhcCCCCCcEEee------hHHHHHHHHHHHHhc
Confidence 46779999999999999999998877444454443 256666666666554
No 195
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.62 E-value=3.4e+02 Score=24.64 Aligned_cols=12 Identities=42% Similarity=0.542 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHH
Q psy4150 159 VTQQEQKEIMKK 170 (395)
Q Consensus 159 ~~~~~R~~~l~~ 170 (395)
++.+||.++++.
T Consensus 51 Ls~~Er~~v~~~ 62 (291)
T 3a5f_A 51 MTETERKETIKF 62 (291)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444433
No 196
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=20.39 E-value=3.1e+02 Score=24.45 Aligned_cols=51 Identities=14% Similarity=-0.047 Sum_probs=38.0
Q ss_pred CCccEEEEcCcHHHHHHHHHHHcccCCCCceeEEeccCCCCCHHHHHHHHHHHhcCC
Q psy4150 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGE 175 (395)
Q Consensus 119 ~~~r~iVF~~t~~~ae~l~~~L~~~~~~~~~~~lhg~~~~~~~~~R~~~l~~Fk~g~ 175 (395)
.++.+.|+++|-..+++..+.|.+.++.-++.++. .+.++.++.+.+..+-
T Consensus 25 rd~~~yVla~~qrd~~W~rq~L~k~~~~~~~~V~~------~~~~~~~i~~~l~~~~ 75 (227)
T 3gr1_A 25 RDKMLYVAAQNERDTLWARQVLARGDYDKNARVIN------ENEENKRISIWLDTYY 75 (227)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCTTTEEEEC------HHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEccccHHHHHHHHHHhcCCcCCeEEEe------hHHHHHHHHHHHHhcC
Confidence 36789999999999999999998877545555543 3666777777666643
No 197
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.26 E-value=2.8e+02 Score=20.93 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=13.1
Q ss_pred ccEEEEcCcHHHHHHHHHHHcccC
Q psy4150 121 TKVIIFANYRVVVAEIFDVLKPLE 144 (395)
Q Consensus 121 ~r~iVF~~t~~~ae~l~~~L~~~~ 144 (395)
.++||.-......+.+...|...|
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g 31 (142)
T 3cg4_A 8 GDVMIVDDDAHVRIAVKTILSDAG 31 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTT
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCC
Confidence 445555555555555555555544
No 198
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=20.01 E-value=34 Score=29.44 Aligned_cols=36 Identities=3% Similarity=0.055 Sum_probs=29.1
Q ss_pred HHHHHHhcchHHHHHHHHhC--CCcchhhhccccCccc
Q psy4150 26 QRDFHVTHSLASALENLVTY--GLRSFYNNLVEVSKED 61 (395)
Q Consensus 26 ead~~~~~~l~~~~~~L~~~--g~r~~~~fsatl~~~~ 61 (395)
|+|.+...++...+..+... ...+.+.+|||++...
T Consensus 158 Eah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 158 EADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp SHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGG
T ss_pred CchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHH
Confidence 89999999998887777664 2467899999998765
Done!