Your job contains 1 sequence.
>psy4150
MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFYNNLVEVSKE
DGSCPILGKDNDLQNLLQQLKPKLDINIMSSEYAWSHLKFIRLREILESHFRLHAEKGET
TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI
ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTS
MQTCKSYVEKIINNKSIYANLAKNGPRMIPAHVTPRIKCLHIVVKDRVTPAKPSKKKPKE
NEKANKKSKKKLETDGNSEPAGKQNKTNAKKTKKQPMMTQSNDIRTCFENITKKKKTFID
FLTQSSGEPVSAMDDEVVIVQNKIKPMQRKRKNNP
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy4150
(395 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|B2RTQ9 - symbol:FANCM "FANCM protein" species:9... 430 1.4e-44 3
UNIPROTKB|Q8IYD8 - symbol:FANCM "Fanconi anemia group M p... 430 1.5e-44 3
ZFIN|ZDB-GENE-090929-1 - symbol:fancm "Fanconi anemia, co... 455 1.6e-43 2
UNIPROTKB|J9NY43 - symbol:FANCM "Uncharacterized protein"... 425 3.6e-42 3
UNIPROTKB|E2RNF7 - symbol:FANCM "Uncharacterized protein"... 425 3.8e-42 3
UNIPROTKB|J9P777 - symbol:FANCM "Uncharacterized protein"... 425 3.8e-42 3
UNIPROTKB|F1NE03 - symbol:Gga.50035 "Uncharacterized prot... 429 1.0e-41 3
UNIPROTKB|I3LAY7 - symbol:FANCM "Uncharacterized protein"... 433 2.4e-41 2
UNIPROTKB|F1SI11 - symbol:FANCM "Uncharacterized protein"... 433 2.5e-41 2
UNIPROTKB|A4RN08 - symbol:MPH1 "ATP-dependent DNA helicas... 374 6.0e-39 2
MGI|MGI:2442306 - symbol:Fancm "Fanconi anemia, complemen... 421 7.8e-38 1
POMBASE|SPAC20H4.04 - symbol:fml2 "ATP-dependent 3' to 5'... 391 2.1e-35 1
FB|FBgn0038889 - symbol:CG7922 species:7227 "Drosophila m... 362 9.8e-35 3
POMBASE|SPAC9.05 - symbol:fml1 "ATP-dependent 3' to 5' DN... 377 8.0e-34 1
ASPGD|ASPL0000062874 - symbol:AN10063 species:162425 "Eme... 372 3.9e-33 1
SGD|S000001441 - symbol:MPH1 "3'-5' DNA helicase involved... 288 1.3e-27 2
DICTYBASE|DDB_G0274841 - symbol:fncM "ATP-dependent DNA h... 316 9.8e-27 1
CGD|CAL0005976 - symbol:MPH1 species:5476 "Candida albica... 286 1.3e-25 2
UNIPROTKB|A2A376 - symbol:DDX58 "Probable ATP-dependent R... 173 5.3e-10 1
MGI|MGI:1918836 - symbol:Ifih1 "interferon induced with h... 174 6.6e-10 1
UNIPROTKB|B3KWW1 - symbol:DDX58 "cDNA FLJ44001 fis, clone... 173 6.7e-10 1
UNIPROTKB|O95786 - symbol:DDX58 "Probable ATP-dependent R... 173 7.5e-10 1
UNIPROTKB|D4AC08 - symbol:Ifih1 "Protein Ifih1" species:1... 172 1.0e-09 1
RGD|1560496 - symbol:Ifih1 "interferon induced with helic... 172 1.1e-09 1
MGI|MGI:2442858 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) bo... 171 1.3e-09 1
UNIPROTKB|E2QXT4 - symbol:DHX58 "Uncharacterized protein"... 166 2.9e-09 1
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 175 9.5e-09 2
RGD|1310093 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box poly... 159 1.8e-08 1
SGD|S000001212 - symbol:DBP8 "ATPase, putative RNA helica... 156 1.8e-08 1
UNIPROTKB|F1NDV4 - symbol:IFIH1 "Uncharacterized protein"... 159 1.8e-08 1
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 163 2.1e-08 1
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 162 2.6e-08 1
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 171 2.8e-08 2
UNIPROTKB|K7GMB7 - symbol:DHX58 "Uncharacterized protein"... 156 3.1e-08 1
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 160 3.5e-08 1
UNIPROTKB|Q8EI96 - symbol:srmB "ATP-dependent RNA helicas... 153 3.8e-08 1
TIGR_CMR|SO_0947 - symbol:SO_0947 "ATP-dependent RNA heli... 153 3.8e-08 1
UNIPROTKB|F1S0P6 - symbol:DHX58 "Uncharacterized protein"... 156 3.9e-08 1
UNIPROTKB|E2RNK0 - symbol:IFIH1 "Uncharacterized protein"... 158 4.1e-08 1
CGD|CAL0004058 - symbol:DBP8 species:5476 "Candida albica... 153 4.1e-08 1
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 158 4.8e-08 1
MGI|MGI:1931560 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box ... 155 5.0e-08 1
UNIPROTKB|Q9GLV6 - symbol:DDX58 "Probable ATP-dependent R... 156 6.1e-08 1
UNIPROTKB|I3LGW3 - symbol:DDX58 "Probable ATP-dependent R... 156 6.2e-08 1
ZFIN|ZDB-GENE-081104-438 - symbol:ifih1 "interferon induc... 156 6.5e-08 1
POMBASE|SPBC543.06c - symbol:dbp8 "ATP-dependent RNA heli... 151 7.4e-08 1
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 152 8.1e-08 1
UNIPROTKB|E1BJZ0 - symbol:IFIH1 "Uncharacterized protein"... 158 9.1e-08 2
UNIPROTKB|Q96C10 - symbol:DHX58 "Probable ATP-dependent R... 150 1.8e-07 1
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 154 2.3e-07 1
RGD|1309460 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box po... 150 2.8e-07 1
UNIPROTKB|Q9BYX4 - symbol:IFIH1 "Interferon-induced helic... 156 3.2e-07 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 145 3.2e-07 1
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 145 3.2e-07 1
UNIPROTKB|D4A8D9 - symbol:Ddx58 "Protein Ddx58" species:1... 148 3.2e-07 1
GENEDB_PFALCIPARUM|PFE0215w - symbol:PFE0215w "ATP-depend... 148 3.5e-07 1
UNIPROTKB|Q8I457 - symbol:PFE0215w "ATP-dependent helicas... 148 3.5e-07 1
WB|WBGene00008400 - symbol:drh-3 species:6239 "Caenorhabd... 149 4.5e-07 1
UNIPROTKB|F1MKU1 - symbol:DDX58 "Uncharacterized protein"... 148 4.7e-07 1
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 151 5.0e-07 1
DICTYBASE|DDB_G0294407 - symbol:helF "DEAD/DEAH box helic... 152 5.4e-07 2
RGD|1310934 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box po... 142 5.5e-07 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 147 6.1e-07 1
FB|FBgn0037573 - symbol:eIF4AIII "eIF4AIII" species:7227 ... 141 7.8e-07 1
WB|WBGene00018007 - symbol:F33D11.10 species:6239 "Caenor... 141 7.8e-07 1
WB|WBGene00022029 - symbol:Y65B4A.6 species:6239 "Caenorh... 141 7.8e-07 1
UNIPROTKB|E2RMV6 - symbol:DDX58 "Uncharacterized protein"... 146 7.8e-07 1
UNIPROTKB|E1C6M6 - symbol:DDX21 "Uncharacterized protein"... 138 8.5e-07 1
TAIR|locus:504955106 - symbol:emb1138 "embryo defective 1... 143 1.3e-06 1
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 139 1.3e-06 1
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 139 1.3e-06 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 143 1.4e-06 1
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 144 1.5e-06 1
MGI|MGI:2182303 - symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) bo... 142 1.6e-06 1
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 145 1.6e-06 1
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 141 1.8e-06 1
UNIPROTKB|E2RPT4 - symbol:DDX50 "Uncharacterized protein"... 141 1.9e-06 1
WB|WBGene00011032 - symbol:R05D11.4 species:6239 "Caenorh... 140 1.9e-06 1
SGD|S000002651 - symbol:PRP28 "RNA helicase in the DEAD-b... 140 1.9e-06 1
UNIPROTKB|F1MMK3 - symbol:DDX50 "Uncharacterized protein"... 141 2.0e-06 1
UNIPROTKB|Q9BQ39 - symbol:DDX50 "ATP-dependent RNA helica... 141 2.0e-06 1
UNIPROTKB|F1SUG8 - symbol:DDX50 "Uncharacterized protein"... 141 2.0e-06 1
UNIPROTKB|E2QTT0 - symbol:DDX50 "Uncharacterized protein"... 141 2.0e-06 1
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 147 2.1e-06 2
UNIPROTKB|E2QTL6 - symbol:DDX21 "Uncharacterized protein"... 141 2.2e-06 1
UNIPROTKB|F6V8G4 - symbol:DDX21 "Uncharacterized protein"... 141 2.2e-06 1
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 137 2.5e-06 1
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 137 2.5e-06 1
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 148 2.5e-06 2
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 148 2.5e-06 2
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 148 2.6e-06 2
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 148 2.6e-06 2
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 148 2.6e-06 2
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 138 2.6e-06 1
UNIPROTKB|Q73EU1 - symbol:cshA "DEAD-box ATP-dependent RN... 138 2.7e-06 1
UNIPROTKB|A0R8U6 - symbol:cshA "DEAD-box ATP-dependent RN... 138 2.7e-06 1
UNIPROTKB|Q63GX5 - symbol:cshA "DEAD-box ATP-dependent RN... 138 2.7e-06 1
UNIPROTKB|Q6HPE6 - symbol:cshA "DEAD-box ATP-dependent RN... 138 2.7e-06 1
UNIPROTKB|Q81VG0 - symbol:cshA "DEAD-box ATP-dependent RN... 138 2.7e-06 1
TIGR_CMR|BA_0247 - symbol:BA_0247 "ATP-dependent RNA heli... 138 2.7e-06 1
WARNING: Descriptions of 295 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|B2RTQ9 [details] [associations]
symbol:FANCM "FANCM protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 UniGene:Hs.509229
HGNC:HGNC:23168 HOVERGEN:HBG081520 Gene3D:3.40.50.10130
EMBL:AL121809 EMBL:BC140776 EMBL:BC144511 IPI:IPI01014004
SMR:B2RTQ9 STRING:B2RTQ9 Ensembl:ENST00000542564 UCSC:uc010anf.3
Uniprot:B2RTQ9
Length = 2022
Score = 430 (156.4 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 87/204 (42%), Positives = 138/204 (67%)
Query: 90 SSEYAWSHLKFIRLREILESHFRL-HAE-----KGETTKVIIFANYRVVVAEIFDVLKPL 143
+ ++ +SH K +L E++ HF+ +AE K + T+V+IF+++R V EI ++L
Sbjct: 414 NKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQH 473
Query: 144 EPMVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198
+P+++ FVG +SG TQ+EQ E++K+FR G +NTL++T VGEEGLDIGE+DL+I
Sbjct: 474 QPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLII 533
Query: 199 CFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIY 258
CFD+QKSPI++VQR+GRTGRKR GR VI+L++GRE + S +S + I +N+ +
Sbjct: 534 CFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQSQSNKRSIYKAISSNRQVL 593
Query: 259 ANLAKNGPRMIPAHVTPRIKCLHI 282
+ + PRM+P + P++ + I
Sbjct: 594 -HFYQRSPRMVPDGINPKLHKMFI 616
Score = 60 (26.2 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 351 ITKKKKTFIDFLTQSSGEPVSAMDDEV--VIVQNKIKP 386
IT KK +FI + Q S V D+E ++ Q IKP
Sbjct: 784 ITHKKSSFIKNINQGSSSSVIESDEECAEIVKQTHIKP 821
Score = 53 (23.7 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA+D++ K+ + P+I +I+ +F + SL E L G+RS Y
Sbjct: 309 ILARDQFRKNPS--PNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLY 357
>UNIPROTKB|Q8IYD8 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071821 "FANCM-MHF
complex" evidence=IDA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IMP] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00891
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
Orphanet:84 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
PDB:4DRB PDBsum:4DRB InterPro:IPR010994 SUPFAM:SSF47781
EMBL:DQ140356 EMBL:AK093422 EMBL:BC036056 EMBL:AB046816
IPI:IPI00176581 IPI:IPI00217755 RefSeq:NP_065988.1
UniGene:Hs.509229 PDB:4DAY PDBsum:4DAY ProteinModelPortal:Q8IYD8
SMR:Q8IYD8 IntAct:Q8IYD8 STRING:Q8IYD8 PhosphoSite:Q8IYD8
DMDM:78099254 PaxDb:Q8IYD8 PRIDE:Q8IYD8 DNASU:57697
Ensembl:ENST00000267430 Ensembl:ENST00000556036 GeneID:57697
KEGG:hsa:57697 UCSC:uc001wwc.2 UCSC:uc001wwd.4 CTD:57697
GeneCards:GC14P045605 HGNC:HGNC:23168 MIM:609644 MIM:614087
neXtProt:NX_Q8IYD8 PharmGKB:PA134943156 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 InParanoid:Q8IYD8 KO:K10896
OMA:QMGMRSL OrthoDB:EOG4C5CHK GenomeRNAi:57697 NextBio:64551
ArrayExpress:Q8IYD8 Bgee:Q8IYD8 CleanEx:HS_FANCM
Genevestigator:Q8IYD8 GermOnline:ENSG00000187790
Gene3D:3.40.50.10130 Uniprot:Q8IYD8
Length = 2048
Score = 430 (156.4 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 87/204 (42%), Positives = 138/204 (67%)
Query: 90 SSEYAWSHLKFIRLREILESHFRL-HAE-----KGETTKVIIFANYRVVVAEIFDVLKPL 143
+ ++ +SH K +L E++ HF+ +AE K + T+V+IF+++R V EI ++L
Sbjct: 440 NKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQH 499
Query: 144 EPMVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198
+P+++ FVG +SG TQ+EQ E++K+FR G +NTL++T VGEEGLDIGE+DL+I
Sbjct: 500 QPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLDIGEVDLII 559
Query: 199 CFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIY 258
CFD+QKSPI++VQR+GRTGRKR GR VI+L++GRE + S +S + I +N+ +
Sbjct: 560 CFDSQKSPIRLVQRMGRTGRKRQGRIVIILSEGREERIYNQSQSNKRSIYKAISSNRQVL 619
Query: 259 ANLAKNGPRMIPAHVTPRIKCLHI 282
+ + PRM+P + P++ + I
Sbjct: 620 -HFYQRSPRMVPDGINPKLHKMFI 642
Score = 60 (26.2 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 351 ITKKKKTFIDFLTQSSGEPVSAMDDEV--VIVQNKIKP 386
IT KK +FI + Q S V D+E ++ Q IKP
Sbjct: 810 ITHKKSSFIKNINQGSSSSVIESDEECAEIVKQTHIKP 847
Score = 53 (23.7 bits), Expect = 1.5e-44, Sum P(3) = 1.5e-44
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA+D++ K+ + P+I +I+ +F + SL E L G+RS Y
Sbjct: 335 ILARDQFRKNPS--PNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLY 383
>ZFIN|ZDB-GENE-090929-1 [details] [associations]
symbol:fancm "Fanconi anemia, complementation group
M" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR006166 InterPro:IPR011545 InterPro:IPR020819
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00891 ZFIN:ZDB-GENE-090929-1 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
HOVERGEN:HBG081520 KO:K10896 Gene3D:3.40.50.10130 EMBL:EF088195
IPI:IPI00882629 RefSeq:NP_001107132.1 UniGene:Dr.154581
ProteinModelPortal:A8QLH8 GeneID:100006685 KEGG:dre:100006685
NextBio:20787226 Uniprot:A8QLH8
Length = 1761
Score = 455 (165.2 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 91/204 (44%), Positives = 136/204 (66%)
Query: 89 MSSEYAWSHLKFIRLREILESHFRLHAEKGET----TKVIIFANYRVVVAEIFDVLKPLE 144
+ Y ++H K +L E++ HF+ AE + T+V+IF++YR V EI ++L +
Sbjct: 399 LEEPYVYTHPKLQKLDEVVLRHFQTCAESSDVSAVDTRVMIFSSYRESVQEIAEMLNRHQ 458
Query: 145 PMVKASMFVGQSS------GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVI 198
P+V+ F+GQ+S G TQ+EQ E++ +FR G FNTL++T VGEEGLDIGE+DL++
Sbjct: 459 PLVRVMTFMGQASAGRGVRGFTQKEQLEVVWRFREGGFNTLVSTCVGEEGLDIGEVDLIV 518
Query: 199 CFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIY 258
CFDAQKSPI++VQR+GRTGR+R GR V++L +GRE + S +S + I+ NK +
Sbjct: 519 CFDAQKSPIRLVQRMGRTGRQRQGRIVVILAEGREERTYNQSQSNRRSINKSIMGNKHSF 578
Query: 259 ANLAKNGPRMIPAHVTPRIKCLHI 282
+ + PRM+PA VTP + +HI
Sbjct: 579 -QMFSDSPRMLPADVTPALHKMHI 601
Score = 50 (22.7 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDR-MIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA++++ ++ PHI + +++ DF + SL E L+ G+RS +
Sbjct: 306 ILAREQFRRNPP--PHIQGPQQQGVLEGDFALLISLYHGFELLLQMGIRSLF 355
>UNIPROTKB|J9NY43 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:AAEX03005706
Ensembl:ENSCAFT00000048988 Uniprot:J9NY43
Length = 2022
Score = 425 (154.7 bits), Expect = 3.6e-42, Sum P(3) = 3.6e-42
Identities = 85/202 (42%), Positives = 133/202 (65%)
Query: 92 EYAWSHLKFIRLREILESHFR------LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP 145
++ +SH K +L E++ HF+ +K + T+V+IF+++R V EI ++L +P
Sbjct: 416 KFFYSHPKLKKLEEVVLEHFKSWNIQNTSEKKCDETRVMIFSSFRDSVQEIAEMLLQHQP 475
Query: 146 MVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICF 200
+++ FVG +SG TQ+EQ E++K+FR+G +NTL++T VGEEGLDIGE+DL+ICF
Sbjct: 476 VIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICF 535
Query: 201 DAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYAN 260
DAQKSPI++VQR+GRTGRKR GR V++L +GRE + S +S + I N+ + +
Sbjct: 536 DAQKSPIRLVQRMGRTGRKRKGRIVVILAEGREERTYNQSQSNKRSIYKAISGNRQVL-H 594
Query: 261 LAKNGPRMIPAHVTPRIKCLHI 282
+ PRM+P + P + + I
Sbjct: 595 FYQGSPRMVPDGINPELHKMFI 616
Score = 53 (23.7 bits), Expect = 3.6e-42, Sum P(3) = 3.6e-42
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA+D++ K+ + P+I +I+ +F + SL E L G+RS Y
Sbjct: 309 ILARDQFRKNPS--PNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLY 357
Score = 42 (19.8 bits), Expect = 3.6e-42, Sum P(3) = 3.6e-42
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 352 TKKKKTFIDFLTQSSGEPVSAMDDEV--VIVQNKIKP 386
+ KK +F+ + Q S ++ D+E + Q +KP
Sbjct: 784 SNKKSSFLGNINQGSSFLMTESDEECAEIFKQTHVKP 820
>UNIPROTKB|E2RNF7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071821 "FANCM-MHF complex" evidence=IEA]
[GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA]
[GO:0031297 "replication fork processing" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
KO:K10896 Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 RefSeq:XP_537429.2 Ensembl:ENSCAFT00000022327
GeneID:480307 KEGG:cfa:480307 Uniprot:E2RNF7
Length = 2047
Score = 425 (154.7 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 85/202 (42%), Positives = 133/202 (65%)
Query: 92 EYAWSHLKFIRLREILESHFR------LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP 145
++ +SH K +L E++ HF+ +K + T+V+IF+++R V EI ++L +P
Sbjct: 442 KFFYSHPKLKKLEEVVLEHFKSWNIQNTSEKKCDETRVMIFSSFRDSVQEIAEMLLQHQP 501
Query: 146 MVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICF 200
+++ FVG +SG TQ+EQ E++K+FR+G +NTL++T VGEEGLDIGE+DL+ICF
Sbjct: 502 VIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICF 561
Query: 201 DAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYAN 260
DAQKSPI++VQR+GRTGRKR GR V++L +GRE + S +S + I N+ + +
Sbjct: 562 DAQKSPIRLVQRMGRTGRKRKGRIVVILAEGREERTYNQSQSNKRSIYKAISGNRQVL-H 620
Query: 261 LAKNGPRMIPAHVTPRIKCLHI 282
+ PRM+P + P + + I
Sbjct: 621 FYQGSPRMVPDGINPELHKMFI 642
Score = 53 (23.7 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA+D++ K+ + P+I +I+ +F + SL E L G+RS Y
Sbjct: 335 ILARDQFRKNPS--PNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLY 383
Score = 42 (19.8 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 352 TKKKKTFIDFLTQSSGEPVSAMDDEV--VIVQNKIKP 386
+ KK +F+ + Q S ++ D+E + Q +KP
Sbjct: 810 SNKKSSFLGNINQGSSFLMTESDEECAEIFKQTHVKP 846
>UNIPROTKB|J9P777 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
OMA:QMGMRSL Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 Ensembl:ENSCAFT00000046644 Uniprot:J9P777
Length = 2048
Score = 425 (154.7 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 85/202 (42%), Positives = 133/202 (65%)
Query: 92 EYAWSHLKFIRLREILESHFR------LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEP 145
++ +SH K +L E++ HF+ +K + T+V+IF+++R V EI ++L +P
Sbjct: 442 KFFYSHPKLKKLEEVVLEHFKSWNIQNTSEKKCDETRVMIFSSFRDSVQEIAEMLLQHQP 501
Query: 146 MVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICF 200
+++ FVG +SG TQ+EQ E++K+FR+G +NTL++T VGEEGLDIGE+DL+ICF
Sbjct: 502 VIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICF 561
Query: 201 DAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYAN 260
DAQKSPI++VQR+GRTGRKR GR V++L +GRE + S +S + I N+ + +
Sbjct: 562 DAQKSPIRLVQRMGRTGRKRKGRIVVILAEGREERTYNQSQSNKRSIYKAISGNRQVL-H 620
Query: 261 LAKNGPRMIPAHVTPRIKCLHI 282
+ PRM+P + P + + I
Sbjct: 621 FYQGSPRMVPDGINPELHKMFI 642
Score = 53 (23.7 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA+D++ K+ + P+I +I+ +F + SL E L G+RS Y
Sbjct: 335 ILARDQFRKNPS--PNIVGIQQGIIEGEFAICISLYHGYELLQQMGMRSLY 383
Score = 42 (19.8 bits), Expect = 3.8e-42, Sum P(3) = 3.8e-42
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 352 TKKKKTFIDFLTQSSGEPVSAMDDEV--VIVQNKIKP 386
+ KK +F+ + Q S ++ D+E + Q +KP
Sbjct: 810 SNKKSSFLGNINQGSSFLMTESDEECAEIFKQTHVKP 846
>UNIPROTKB|F1NE03 [details] [associations]
symbol:Gga.50035 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IEA] [GO:0071821 "FANCM-MHF complex" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL Gene3D:3.40.50.10130
GeneTree:ENSGT00640000091530 EMBL:AADN02004087 EMBL:AADN02004088
IPI:IPI00590518 Ensembl:ENSGALT00000020359 ArrayExpress:F1NE03
Uniprot:F1NE03
Length = 1836
Score = 429 (156.1 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 90/206 (43%), Positives = 132/206 (64%)
Query: 92 EYAWSHLKFIRLREILESHFRLH----AEKGET---TKVIIFANYRVVVAEIFDVLKPLE 144
E+ +SH K +L EI+ HF+ G T T+V+IF+++R V EI ++L
Sbjct: 275 EFIYSHPKLKKLEEIVIEHFKSRKTDQTTSGGTCVDTRVMIFSSFRDSVQEIAEMLSRFS 334
Query: 145 PMVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC 199
P+V+ FVG S+G TQ+EQ E++K+FR G +NTL++T VGEEGLDIGE+DL+IC
Sbjct: 335 PVVRVMTFVGHSTGKSTKGFTQKEQLEVVKRFREGGYNTLVSTCVGEEGLDIGEVDLIIC 394
Query: 200 FDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYA 259
FDAQKSPI++VQR+GRTGR+R GR V++L +GRE + S +S + I NK ++
Sbjct: 395 FDAQKSPIRLVQRMGRTGRQRQGRVVVILAEGREERTYNQSQSNRRSIQKAISGNKMLH- 453
Query: 260 NLAKNGPRMIPAHVTPRIKCLHIVVK 285
++ PRMIP + P + + I +
Sbjct: 454 -FYQHSPRMIPEGINPELHRMFITAE 478
Score = 48 (22.0 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFYNNLVEVSKE 60
+LA+D+Y K+ + ++ +I+ DF + SL E L G+RS + L +
Sbjct: 166 ILARDQYRKNPSP-QNVGMQ-PGIIEGDFALCISLYHGYELLQQMGVRSLFIYLCGIM-- 221
Query: 61 DGS 63
DGS
Sbjct: 222 DGS 224
Score = 37 (18.1 bits), Expect = 1.0e-41, Sum P(3) = 1.0e-41
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 341 SNDIRTCFENITKKKKTFIDFLTQSSGEPVSAMDDE 376
+N + C + KK I L+ SSGE + +++
Sbjct: 1458 ANMEQNCSAPVQKKPSRII-VLSDSSGEETNVSNEK 1492
>UNIPROTKB|I3LAY7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006259 "DNA
metabolic process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000030082 Uniprot:I3LAY7
Length = 2028
Score = 433 (157.5 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 87/202 (43%), Positives = 137/202 (67%)
Query: 92 EYAWSHLKFIRLREILESHFRL-HAE-----KGETTKVIIFANYRVVVAEIFDVLKPLEP 145
++ +SH K +L E++ HF+ +A+ K + T+V+IF+++R V EI ++L +P
Sbjct: 425 KFCYSHPKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLRHQP 484
Query: 146 MVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICF 200
+++ FVG +SG TQ+EQ E++K+FR+G +NTL++T VGEEGLDIGE+DL+ICF
Sbjct: 485 IIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICF 544
Query: 201 DAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYAN 260
DAQKSPI++VQR+GRTGRKR GR V++L +GRE + S +S + I NK + +
Sbjct: 545 DAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKRSIYKAISGNKQVL-H 603
Query: 261 LAKNGPRMIPAHVTPRIKCLHI 282
+ PRM+P ++P++ + I
Sbjct: 604 FYQGSPRMVPEGISPQLHKMFI 625
Score = 53 (23.7 bits), Expect = 2.4e-41, Sum P(2) = 2.4e-41
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA+D++ K+ + P+I +I+ +F + SL E L G+RS Y
Sbjct: 318 ILARDQFRKNPS--PNIVGMQQGIIEGEFAICISLYHGYELLQQMGMRSLY 366
>UNIPROTKB|F1SI11 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071821 "FANCM-MHF complex" evidence=IEA] [GO:0043240
"Fanconi anaemia nuclear complex" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000005515 Uniprot:F1SI11
Length = 2054
Score = 433 (157.5 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 87/202 (43%), Positives = 137/202 (67%)
Query: 92 EYAWSHLKFIRLREILESHFRL-HAE-----KGETTKVIIFANYRVVVAEIFDVLKPLEP 145
++ +SH K +L E++ HF+ +A+ K + T+V+IF+++R V EI ++L +P
Sbjct: 451 KFCYSHPKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLRHQP 510
Query: 146 MVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICF 200
+++ FVG +SG TQ+EQ E++K+FR+G +NTL++T VGEEGLDIGE+DL+ICF
Sbjct: 511 IIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICF 570
Query: 201 DAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYAN 260
DAQKSPI++VQR+GRTGRKR GR V++L +GRE + S +S + I NK + +
Sbjct: 571 DAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKRSIYKAISGNKQVL-H 629
Query: 261 LAKNGPRMIPAHVTPRIKCLHI 282
+ PRM+P ++P++ + I
Sbjct: 630 FYQGSPRMVPEGISPQLHKMFI 651
Score = 53 (23.7 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 1 MLAKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFY 51
+LA+D++ K+ + P+I +I+ +F + SL E L G+RS Y
Sbjct: 344 ILARDQFRKNPS--PNIVGMQQGIIEGEFAICISLYHGYELLQQMGMRSLY 392
>UNIPROTKB|A4RN08 [details] [associations]
symbol:MPH1 "ATP-dependent DNA helicase MPH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 eggNOG:COG1111
KO:K14635 OrthoDB:EOG4JHGPV RefSeq:XP_003713523.1
ProteinModelPortal:A4RN08 STRING:A4RN08 EnsemblFungi:MGG_04429T0
GeneID:2678216 KEGG:mgr:MGG_04429 Uniprot:A4RN08
Length = 1102
Score = 374 (136.7 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 80/186 (43%), Positives = 119/186 (63%)
Query: 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ- 155
H K L + L ++F + A +G +T+VI+F+ YR EI VL +PM+ AS+FVGQ
Sbjct: 481 HPKLTHLCDNLLNYF-MDAGEGSSTRVIVFSEYRDSAEEITRVLNVHKPMISASLFVGQA 539
Query: 156 ----SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQ 211
S G+ Q++Q E + KFR G FN L+ATS+GEEGLDIG++DL+IC+DA SPI+M+Q
Sbjct: 540 DSKKSEGMKQKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQ 599
Query: 212 RLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAKNGPRMIPA 271
R+GRTGRKR G+ +LL +G+E N+ + + ++K+I S + R++P
Sbjct: 600 RMGRTGRKRAGKITLLLMKGKEEDNYAKAQDNYEK-MQKLICEGSRFNFRHDLSSRIVPR 658
Query: 272 HVTPRI 277
V P +
Sbjct: 659 DVKPEV 664
Score = 82 (33.9 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 3 AKDKYVKSKAQFPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFYNNLVEVSKE 60
A+ ++K +F N+ L M+ F + SLA A++ L +G+R FY+NLV E
Sbjct: 386 ARQDWMKGPGRFA--NQGLKMMLMAIFTILQSLAHAIKLLNYHGIRPFYDNLVAFRSE 441
>MGI|MGI:2442306 [details] [associations]
symbol:Fancm "Fanconi anemia, complementation group M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=ISO] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=ISO] [GO:0071821 "FANCM-MHF complex" evidence=ISO]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 MGI:MGI:2442306
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 KO:K10896 OMA:QMGMRSL
OrthoDB:EOG4C5CHK Gene3D:3.40.50.10130 EMBL:AK050306 EMBL:AK053715
EMBL:AK084697 EMBL:AK086395 EMBL:AK173211 IPI:IPI00471330
IPI:IPI00654953 IPI:IPI00654989 IPI:IPI00655127 RefSeq:NP_849243.2
UniGene:Mm.374847 ProteinModelPortal:Q8BGE5 SMR:Q8BGE5
STRING:Q8BGE5 PhosphoSite:Q8BGE5 PRIDE:Q8BGE5
Ensembl:ENSMUST00000058889 GeneID:104806 KEGG:mmu:104806
UCSC:uc007nrc.1 UCSC:uc007nrd.1 UCSC:uc007nrf.1 UCSC:uc011ymf.1
GeneTree:ENSGT00640000091530 InParanoid:Q8BGE5 NextBio:357300
Bgee:Q8BGE5 CleanEx:MM_FANCM Genevestigator:Q8BGE5
GermOnline:ENSMUSG00000055884 Uniprot:Q8BGE5
Length = 2021
Score = 421 (153.3 bits), Expect = 7.8e-38, P = 7.8e-38
Identities = 84/202 (41%), Positives = 130/202 (64%)
Query: 92 EYAWSHLKFIRLREILESHFRLHAEKGETTK------VIIFANYRVVVAEIFDVLKPLEP 145
++ +SH K +L E++ HF+ K T K V+IF+++R V EI ++L P
Sbjct: 427 KFVYSHPKLKKLEEVILEHFKSWNAKATTEKKCHESRVMIFSSFRDSVEEIAEMLLQHRP 486
Query: 146 MVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICF 200
+++ FVG +SG TQ+EQ +++++FR G +NTL++T VGEEGLDIGE+DL+ICF
Sbjct: 487 VIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICF 546
Query: 201 DAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYAN 260
DAQKSPI+++QR+GRTGRKR GR V++L +GRE + S K+ + I N+ +
Sbjct: 547 DAQKSPIRLIQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKKNIYKAISGNRQVL-R 605
Query: 261 LAKNGPRMIPAHVTPRIKCLHI 282
L + PRM+P + P + ++I
Sbjct: 606 LYQGSPRMVPDKINPELHKMYI 627
>POMBASE|SPAC20H4.04 [details] [associations]
symbol:fml2 "ATP-dependent 3' to 5' DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20H4.04
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG1111 GO:GO:0033567
RefSeq:NP_593624.1 ProteinModelPortal:Q9HE09
EnsemblFungi:SPAC20H4.04.1 GeneID:2542014 KEGG:spo:SPAC20H4.04
OMA:ILIVVER OrthoDB:EOG4HHSCC NextBio:20803094 Uniprot:Q9HE09
Length = 783
Score = 391 (142.7 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 81/188 (43%), Positives = 123/188 (65%)
Query: 96 SHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ 155
+H K L E+L+ HF+ +E + +V+IF +R I L + PMV+AS+F+GQ
Sbjct: 447 NHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIRPMVRASLFIGQ 506
Query: 156 -----SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMV 210
S+G+ Q +QKE + +FRAG NTL+ATS+GEEGLDIG+ D++IC+DA SPI+ +
Sbjct: 507 ANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTI 566
Query: 211 QRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAKNGPRMIP 270
QR+GRTGRK++G+ +LLT+ E ++ S Q V+K+I + A L K+ PR+IP
Sbjct: 567 QRMGRTGRKKSGKVFVLLTEDCEDSKWERS-QVSYRRVQKVIESGKKIA-LKKDVPRLIP 624
Query: 271 AHVTPRIK 278
+++ P K
Sbjct: 625 SNIQPIFK 632
>FB|FBgn0038889 [details] [associations]
symbol:CG7922 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0006200 GO:GO:0016887 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10896
GeneTree:ENSGT00640000091530 RefSeq:NP_650971.2
ProteinModelPortal:Q9VDA0 SMR:Q9VDA0 IntAct:Q9VDA0
MINT:MINT-4080825 EnsemblMetazoa:FBtr0084109 GeneID:42543
KEGG:dme:Dmel_CG7922 UCSC:CG7922-RA FlyBase:FBgn0038889
InParanoid:Q9VDA0 OMA:HRAKGRY OrthoDB:EOG451C5Q PhylomeDB:Q9VDA0
GenomeRNAi:42543 NextBio:829338 ArrayExpress:Q9VDA0 Bgee:Q9VDA0
Uniprot:Q9VDA0
Length = 1489
Score = 362 (132.5 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 74/211 (35%), Positives = 128/211 (60%)
Query: 89 MSSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVK 148
+ S+ + H K+ +LR++L HF+ + + ++ I+F YR V I +L P+++
Sbjct: 405 LPSDLDFGHAKYEKLRQVLVQHFQANPD----SRAIVFCEYRESVMLIHRLLLQHRPVLR 460
Query: 149 ASMFVGQSSGV------TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFD- 201
FVGQ S V TQ++Q +IM FR+G N L+ATS+GEEGLD+GE+++++CFD
Sbjct: 461 PRCFVGQGSTVGASYALTQKQQLQIMTDFRSGTSNVLVATSIGEEGLDVGEVEMIVCFDI 520
Query: 202 AQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANL 261
+P + +QR+GRTGRK+NG V+L+T+GRE + + +K++N+ + +L
Sbjct: 521 CSTNPTRFIQRIGRTGRKKNGEVVMLVTEGREQQVLKDVLANKDQINKKLLNSSVVKLSL 580
Query: 262 AKNGPRMIPAHVTPRIKCLHI--VVKDRVTP 290
+ PRM+P+ P+ + H+ V +++ P
Sbjct: 581 YEQNPRMVPSKFQPKCEEKHMEPVAEEKPKP 611
Score = 43 (20.2 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 24 MIQRDFHVTHSLASALENLVTYGLRSFYNN 53
+I +F + S+ +L+ + +GLR F NN
Sbjct: 326 IIMGNFAMCISMYHSLDLMERHGLRVFVNN 355
Score = 39 (18.8 bits), Expect = 9.8e-35, Sum P(3) = 9.8e-35
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 373 MDDEVVIVQNKIKPMQRKRKNN 394
+ E+ I +++ QR+ KNN
Sbjct: 754 VQSELNIADDRLNSRQRRTKNN 775
>POMBASE|SPAC9.05 [details] [associations]
symbol:fml1 "ATP-dependent 3' to 5' DNA helicase, FANCM
ortholog Fml1" species:4896 "Schizosaccharomyces pombe" [GO:0000732
"strand displacement" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
[GO:0071821 "FANCM-MHF complex" evidence=ISS] [GO:0071932
"replication fork reversal" evidence=IDA] [GO:2000042 "negative
regulation of double-strand break repair via homologous
recombination" evidence=IMP] [GO:0003690 "double-stranded DNA
binding" evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC9.05 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000732 GO:GO:0009378
GO:GO:0071821 eggNOG:COG1111 GO:GO:0033567 GO:GO:0071932 PIR:T39190
RefSeq:NP_593348.2 ProteinModelPortal:Q9UT23 STRING:Q9UT23
EnsemblFungi:SPAC9.05.1 GeneID:2543668 KEGG:spo:SPAC9.05
HOGENOM:HOG000076770 KO:K14635 OMA:RTENSID OrthoDB:EOG4JHGPV
NextBio:20804674 GO:GO:2000042 Uniprot:Q9UT23
Length = 834
Score = 377 (137.8 bits), Expect = 8.0e-34, P = 8.0e-34
Identities = 95/282 (33%), Positives = 152/282 (53%)
Query: 3 AKDKYVKSKAQ-FPHINRDLDRMIQRDFHVTHSLASALENLVTYGLRSFYNNLVEVSKED 61
AK ++ Q FP N+ D I F + A L L+ +G+R FY L EV +E
Sbjct: 319 AKQAFLAMSGQNFP-ANQKWD--ILNTFDALATFAYPLNLLLNHGIRPFYQKLREVEEE- 374
Query: 62 GSCPIXXXXXXXXXXXXXXXX--XXXINIMSSEYAW-SHLKFIRLREILESHFRLHAEKG 118
C + I I+ + ++ H K L I+ +F E+
Sbjct: 375 --CFVGRSGYKKRIINHENYRPLMDDIEILLRDQSFVGHPKLEHLERIVTEYFE--KEQT 430
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSS-----GVTQQEQKEIMKKFRA 173
+ T+++IF R EI L P V+ ++F+GQS+ G++Q+ Q E +K+F+
Sbjct: 431 KDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAAGMSQKLQNETVKQFQK 490
Query: 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGRE 233
GE NTLIATS+GEEGLDIGE+D++IC+DA SPI+M+QR+GRTGRKR G +LLT+G+E
Sbjct: 491 GEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGRKRKGYIYMLLTRGKE 550
Query: 234 AHNFQTSMQTCKSYVEKIINNKSIYANLAKNGPRMIPAHVTP 275
++ + ++ + I++ + + +L++ R++P P
Sbjct: 551 EAKWERAKDAYRTLQDNIVSGRGL--SLSEKSYRILPEKFRP 590
>ASPGD|ASPL0000062874 [details] [associations]
symbol:AN10063 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR003903 SMART:SM00726 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 HOGENOM:HOG000076770
EnsemblFungi:CADANIAT00002426 OMA:YNTIVAT Uniprot:C8VUA7
Length = 971
Score = 372 (136.0 bits), Expect = 3.9e-33, P = 3.9e-33
Identities = 79/192 (41%), Positives = 122/192 (63%)
Query: 97 HLKFIRLREILESHFR-----LHAEKGET---TKVIIFANYRVVVAEIFDVLKPLEPMVK 148
H K LR+++ +HF H E T+V+IF ++R E+ VLK EPM++
Sbjct: 500 HPKLEYLRQVVLNHFMDAGEGTHGAGNENQTATRVMIFVHFRDSAEEVTRVLKRYEPMIR 559
Query: 149 ASMFVGQSS-----GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQ 203
+FVGQSS G+ Q+ Q +I++KF+ G +NT++ATS+GEEGLDIGE+DL++C+D+
Sbjct: 560 PHVFVGQSSAKGSEGMGQKTQLDIIQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSS 619
Query: 204 KSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAK 263
SPI+M+QR+GRTGRKR G V+LL QG+E N+ + + ++++I + S +
Sbjct: 620 ASPIRMLQRMGRTGRKRAGNIVLLLMQGKEEENYLKAKDNYEK-MQQLIASGSQFTFHDD 678
Query: 264 NGPRMIPAHVTP 275
PR+IP + P
Sbjct: 679 RSPRIIPRGIKP 690
>SGD|S000001441 [details] [associations]
symbol:MPH1 "3'-5' DNA helicase involved in error-free bypass
of DNA lesions" species:4932 "Saccharomyces cerevisiae" [GO:0006281
"DNA repair" evidence=IEA] [GO:0060543 "negative regulation of
strand invasion" evidence=IMP;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IGI] [GO:0070336
"flap-structured DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000725 "recombinational repair"
evidence=IMP] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000001441 GO:GO:0005524 GO:GO:0005634 EMBL:BK006942
EMBL:X79743 EMBL:Z38062 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036297 GO:GO:0000725 eggNOG:COG1111
GO:GO:0033567 GO:GO:0043138 GeneTree:ENSGT00640000091530 KO:K14635
OrthoDB:EOG4JHGPV PIR:S48436 RefSeq:NP_012267.1
ProteinModelPortal:P40562 SMR:P40562 DIP:DIP-5016N IntAct:P40562
MINT:MINT-493277 STRING:P40562 PaxDb:P40562 PeptideAtlas:P40562
EnsemblFungi:YIR002C GeneID:854818 KEGG:sce:YIR002C CYGD:YIR002c
HOGENOM:HOG000066122 OMA:KNREEIW NextBio:977660
Genevestigator:P40562 GermOnline:YIR002C GO:GO:0070336
GO:GO:0060543 Uniprot:P40562
Length = 993
Score = 288 (106.4 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 58/133 (43%), Positives = 88/133 (66%)
Query: 155 QSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLG 214
Q SG+ Q+ QKE++ F+ GE+N L+ TS+GEEGLDIGE+DL+IC+D SPIK +QR+G
Sbjct: 547 QISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMG 606
Query: 215 RTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSI-YANLAKNGPRMIPAHV 273
RTGRKR+G+ ++LL E++ F+ +M+ S ++ +I+ + I Y K R+IP +
Sbjct: 607 RTGRKRDGK-IVLLFSSNESYKFERAMEDY-STLQALISKQCIDY----KKSDRIIPEDI 660
Query: 274 TPRIKCLHIVVKD 286
P I + D
Sbjct: 661 IPECHETLITIND 673
Score = 60 (26.2 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 26/129 (20%), Positives = 52/129 (40%)
Query: 33 HSLASALENLVTYGLRSFYNNLVEVSKEDGSCPIXXXXXXXXXXXXXXXXXXXINIMSS- 91
+++ L+ L YG+R+F+N E + NI +
Sbjct: 358 NNVGQMLKRLKIYGIRTFFNYFQNKCTEF-TTKYNLKKSTNKIAAEFYYHPILKNIKNQC 416
Query: 92 EYAWSHLKFI---RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL-EPMV 147
E S KF+ +L+ + + ++G ++VIIF R EI + + + +
Sbjct: 417 ENYLSDPKFVGHGKLQCVRDELMDFFQKRGSDSRVIIFTELRESALEIVKFIDSVADDQI 476
Query: 148 KASMFVGQS 156
+ +F+GQ+
Sbjct: 477 RPHIFIGQA 485
>DICTYBASE|DDB_G0274841 [details] [associations]
symbol:fncM "ATP-dependent DNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274841 GO:GO:0005524
GO:GO:0003677 GO:GO:0006974 EMBL:AAFI02000012 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1111
KO:K10896 RefSeq:XP_644014.1 ProteinModelPortal:Q8T145
EnsemblProtists:DDB0217507 GeneID:8619444 KEGG:ddi:DDB_G0274841
InParanoid:Q8T145 Uniprot:Q8T145
Length = 1789
Score = 316 (116.3 bits), Expect = 9.8e-27, P = 9.8e-27
Identities = 86/256 (33%), Positives = 135/256 (52%)
Query: 42 LVTYGLRSFYNNLVEVSKEDGSCPIXXXXXXXXXXXXXXXXXXXINIMSS-EYAWSHLKF 100
L +GL SFY+ + + ED S I I S + H K
Sbjct: 759 LKVHGLESFYDKISNL--EDAS-----SKTIKAFSKNENWKQFIIKIKKSIDNGLVHDKL 811
Query: 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPL--------EPMVKASMF 152
I+L ++L HF+ + ++KV+IF +R V EI D + + ++K F
Sbjct: 812 IKLNDVLIEHFQ--SNNPRSSKVMIFVQFRRSVQEIIDFISNNNNGGGGGGKSLIKVMPF 869
Query: 153 VGQSS------GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSP 206
GQS+ G+ ++EQ+ I+ F G+ N L++T +GEEGLDIGE+DLV+C+D Q+S
Sbjct: 870 YGQSATDKGVKGIHKKEQQAILNSFVNGDINVLVSTCIGEEGLDIGEVDLVVCYDVQQSS 929
Query: 207 IKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAKNGP 266
+K QR GRTGRKR+GRC+ L+TQG E + ++ S +S ++ + N K + + P
Sbjct: 930 LKNTQRTGRTGRKRDGRCIFLITQGYEEYIYEKS----QSNLDSLSNLKES-SFVFHYSP 984
Query: 267 RMIPAHVTPRIKCLHI 282
+MI + P +K + I
Sbjct: 985 KMIDS--IPLVKYIKI 998
>CGD|CAL0005976 [details] [associations]
symbol:MPH1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0000725 "recombinational
repair" evidence=IEA] [GO:0060543 "negative regulation of strand
invasion" evidence=IEA] [GO:0070336 "flap-structured DNA binding"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0005976 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 EMBL:AACQ01000084 EMBL:AACQ01000083
KO:K14635 RefSeq:XP_715573.1 RefSeq:XP_715628.1
ProteinModelPortal:Q5A1A0 STRING:Q5A1A0 GeneID:3642769
GeneID:3642817 KEGG:cal:CaO19.10436 KEGG:cal:CaO19.2919
Uniprot:Q5A1A0
Length = 1187
Score = 286 (105.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 64/149 (42%), Positives = 95/149 (63%)
Query: 141 KPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICF 200
K P ++S Q +G++Q+ QKEI+KKF+ G FN L+ATS+GEEGLDIGE+DL+IC+
Sbjct: 558 KDERPSTRSSSENAQMTGMSQKLQKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICY 617
Query: 201 DAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYAN 260
D+ SPIK +QR+GRTGRKR+G+ V++L E F +M + Y+++ I K +
Sbjct: 618 DSTSSPIKNIQRMGRTGRKRDGK-VLMLFSSNEESKFDKAMGGYE-YIQQHIM-KGDFIQ 674
Query: 261 LAKNGPRMIPAHVTPR-IKCLHIVVKDRV 288
L RMIP P +K L + ++ +
Sbjct: 675 LRPQH-RMIPDEYKPEAVKQLIQIPEENI 702
Score = 45 (20.9 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 337 MMTQSNDIRTCFENITKKKKTFIDFLTQSSGEPVSAMDDEVVIVQNKIKPMQRKRKNN 394
M+ + D ++ E K+KTF+D L S + S +D E V ++ + + +N+
Sbjct: 760 MVRKVGDNKSLAER--NKEKTFLDKLVDSDSD--SEVDKENENVIQEVDKSKNQEQND 813
>UNIPROTKB|A2A376 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00382 SMART:SM00490
GO:GO:0005524 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
EMBL:AL161783 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
GO:GO:0032728 EMBL:AL353671 HGNC:HGNC:19102 HOGENOM:HOG000230911
HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182 SMR:A2A376
Ensembl:ENST00000379868 Uniprot:A2A376
Length = 722
Score = 173 (66.0 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 52/157 (33%), Positives = 84/157 (53%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSG 158
IL+ + L+ E T I+F R +V + + ++ P +K + G Q++G
Sbjct: 414 ILQEEYHLNPE----TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 469
Query: 159 VTQQEQKEIMKKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK I+ F+A G+ N LIATSV +EG+DI + +LVI ++ + IKM+Q GR G
Sbjct: 470 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 528
Query: 218 RKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINN 254
R R +C +L + Q +M Y EK++N+
Sbjct: 529 RARGSKCFLLTSNAGVIEKEQINM-----YKEKMMND 560
>MGI|MGI:1918836 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=ISO] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISO] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045087
"innate immune response" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194
SMART:SM00490 MGI:MGI:1918836 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0042981 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925 GO:GO:0032727
eggNOG:COG1111 GeneTree:ENSGT00510000046789 GO:GO:0032728
HOVERGEN:HBG106019 CTD:64135 KO:K12647 OMA:KCGQAWG
OrthoDB:EOG48KR9P EMBL:AY075132 EMBL:AF374384 EMBL:AK018602
EMBL:AK037057 EMBL:AK040519 EMBL:AK153018 EMBL:AL929246
EMBL:BC004031 EMBL:BC019605 EMBL:BC025508 EMBL:BC080200
IPI:IPI00172284 IPI:IPI00555048 RefSeq:NP_001157949.1
RefSeq:NP_082111.2 UniGene:Mm.136224 PDB:3TS9 PDBsum:3TS9
ProteinModelPortal:Q8R5F7 SMR:Q8R5F7 STRING:Q8R5F7
PhosphoSite:Q8R5F7 PaxDb:Q8R5F7 PRIDE:Q8R5F7
Ensembl:ENSMUST00000028259 Ensembl:ENSMUST00000112459 GeneID:71586
KEGG:mmu:71586 UCSC:uc012bvy.1 InParanoid:A2AUY7 NextBio:334053
Bgee:Q8R5F7 CleanEx:MM_IFIH1 Genevestigator:Q8R5F7
GermOnline:ENSMUSG00000026896 Uniprot:Q8R5F7
Length = 1025
Score = 174 (66.3 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 59/143 (41%), Positives = 79/143 (55%)
Query: 99 KFIRLRE-ILESHFRLHAEKGETTKVIIFANYR---VVVAE-IFDVLKPLEPMVKASMFV 153
K I+LR ILE R +E E+++ IIF R +++ I + K E VKA +
Sbjct: 700 KLIKLRNTILEQFTR--SE--ESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLI 755
Query: 154 G--QSSGV---TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208
G SS V TQ EQKE++ KFR GE N LIAT+V EEGLDI E ++VI + + I
Sbjct: 756 GAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIA 815
Query: 209 MVQRLGRTGRKRNGRCVILLTQG 231
MVQ GR R V++ + G
Sbjct: 816 MVQARGRA-RADESTYVLVTSSG 837
>UNIPROTKB|B3KWW1 [details] [associations]
symbol:DDX58 "cDNA FLJ44001 fis, clone TESTI4022716, highly
similar to Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671 UniGene:Hs.190622
HGNC:HGNC:19102 HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182
EMBL:AK125989 SMR:B3KWW1 STRING:B3KWW1 Ensembl:ENST00000542096
UCSC:uc010mji.3 Uniprot:B3KWW1
Length = 854
Score = 173 (66.0 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 52/157 (33%), Positives = 84/157 (53%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSG 158
IL+ + L+ E T I+F R +V + + ++ P +K + G Q++G
Sbjct: 546 ILQEEYHLNPE----TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 601
Query: 159 VTQQEQKEIMKKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK I+ F+A G+ N LIATSV +EG+DI + +LVI ++ + IKM+Q GR G
Sbjct: 602 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 660
Query: 218 RKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINN 254
R R +C +L + Q +M Y EK++N+
Sbjct: 661 RARGSKCFLLTSNAGVIEKEQINM-----YKEKMMND 692
>UNIPROTKB|O95786 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0043330 "response
to exogenous dsRNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IDA;IMP] [GO:0002230 "positive regulation of
defense response to virus by host" evidence=IMP] [GO:0032727
"positive regulation of interferon-alpha production"
evidence=IDA;IMP] [GO:0045087 "innate immune response"
evidence=IMP;TAS] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0039528 "cytoplasmic
pattern recognition receptor signaling pathway in response to
virus" evidence=TAS] [GO:0003725 "double-stranded RNA binding"
evidence=IMP;IDA;TAS] [GO:0030334 "regulation of cell migration"
evidence=IDA] [GO:0005923 "tight junction" evidence=IDA]
[GO:0032587 "ruffle membrane" evidence=IDA] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0039529 "RIG-I signaling pathway"
evidence=IMP] [GO:0003727 "single-stranded RNA binding"
evidence=IMP] [GO:0009615 "response to virus" evidence=TAS]
[GO:0034344 "regulation of type III interferon production"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=IC] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0009597 "detection of virus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0051091 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0030334 GO:GO:0005923 EMBL:AL161783
EMBL:CH471071 GO:GO:0003690 Reactome:REACT_107772 GO:GO:0032587
GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0008026 GO:GO:0042993 GO:GO:0043330 GO:GO:0032727
eggNOG:COG1111 GO:GO:0032728 EMBL:AF038963 EMBL:AL353671
EMBL:BC132786 EMBL:BC136610 EMBL:BX647917 EMBL:AL137608
IPI:IPI00295503 IPI:IPI00654731 PIR:T46312 RefSeq:NP_055129.2
UniGene:Hs.190622 PDB:2LWD PDB:2LWE PDB:2QFB PDB:2QFD PDB:2RMJ
PDB:2YKG PDB:3LRN PDB:3LRR PDB:3NCU PDB:3OG8 PDB:3TMI PDB:4AY2
PDBsum:2LWD PDBsum:2LWE PDBsum:2QFB PDBsum:2QFD PDBsum:2RMJ
PDBsum:2YKG PDBsum:3LRN PDBsum:3LRR PDBsum:3NCU PDBsum:3OG8
PDBsum:3TMI PDBsum:4AY2 ProteinModelPortal:O95786 SMR:O95786
DIP:DIP-35444N IntAct:O95786 MINT:MINT-2799116 STRING:O95786
PhosphoSite:O95786 PaxDb:O95786 PRIDE:O95786
Ensembl:ENST00000379882 Ensembl:ENST00000379883 GeneID:23586
KEGG:hsa:23586 UCSC:uc003zra.3 UCSC:uc010mjk.1 CTD:23586
GeneCards:GC09M032447 HGNC:HGNC:19102 HPA:CAB012643 MIM:609631
neXtProt:NX_O95786 PharmGKB:PA134994272 HOGENOM:HOG000230911
HOVERGEN:HBG052325 InParanoid:O95786 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 PhylomeDB:O95786 ChiTaRS:DDX58
EvolutionaryTrace:O95786 GenomeRNAi:23586 NextBio:46208
ArrayExpress:O95786 Bgee:O95786 CleanEx:HS_DDX58
Genevestigator:O95786 GermOnline:ENSG00000107201 GO:GO:0009597
GO:GO:0034344 GO:GO:0039529 Uniprot:O95786
Length = 925
Score = 173 (66.0 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 52/157 (33%), Positives = 84/157 (53%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSG 158
IL+ + L+ E T I+F R +V + + ++ P +K + G Q++G
Sbjct: 617 ILQEEYHLNPE----TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 672
Query: 159 VTQQEQKEIMKKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK I+ F+A G+ N LIATSV +EG+DI + +LVI ++ + IKM+Q GR G
Sbjct: 673 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 731
Query: 218 RKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINN 254
R R +C +L + Q +M Y EK++N+
Sbjct: 732 RARGSKCFLLTSNAGVIEKEQINM-----YKEKMMND 763
>UNIPROTKB|D4AC08 [details] [associations]
symbol:Ifih1 "Protein Ifih1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1560496 GO:GO:0005524 GO:GO:0042981 GO:GO:0003677
GO:GO:0005622 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00568713
Ensembl:ENSRNOT00000040263 ArrayExpress:D4AC08 Uniprot:D4AC08
Length = 978
Score = 172 (65.6 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 59/143 (41%), Positives = 79/143 (55%)
Query: 99 KFIRLRE-ILESHFRLHAEKGETTKVIIFANYR---VVVAE-IFDVLKPLEPMVKASMFV 153
K I+LR ILE R +E E+++ IIF R +++ I + K E VKA +
Sbjct: 653 KLIKLRNTILEQFTR--SE--ESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLI 708
Query: 154 G--QSSGV---TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208
G SS V TQ EQKE++ KFR GE N LIAT+V EEGLDI E ++VI + + I
Sbjct: 709 GAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIA 768
Query: 209 MVQRLGRTGRKRNGRCVILLTQG 231
MVQ GR R V++ + G
Sbjct: 769 MVQARGRA-RADESTYVLVTSSG 790
>RGD|1560496 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0016925
"protein sumoylation" evidence=IEA;ISO] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045087 "innate immune response"
evidence=IEA;ISO] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 RGD:1560496
GO:GO:0005524 GO:GO:0042981 GO:GO:0003677 GO:GO:0005622
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH473949
GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647 OMA:KCGQAWG
RefSeq:NP_001102669.1 UniGene:Rn.151974 Ensembl:ENSRNOT00000009620
GeneID:499801 KEGG:rno:499801 NextBio:704049 Uniprot:G3V6W5
Length = 1027
Score = 172 (65.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 59/143 (41%), Positives = 79/143 (55%)
Query: 99 KFIRLRE-ILESHFRLHAEKGETTKVIIFANYR---VVVAE-IFDVLKPLEPMVKASMFV 153
K I+LR ILE R +E E+++ IIF R +++ I + K E VKA +
Sbjct: 702 KLIKLRNTILEQFTR--SE--ESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLI 757
Query: 154 G--QSSGV---TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208
G SS V TQ EQKE++ KFR GE N LIAT+V EEGLDI E ++VI + + I
Sbjct: 758 GAGHSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIA 817
Query: 209 MVQRLGRTGRKRNGRCVILLTQG 231
MVQ GR R V++ + G
Sbjct: 818 MVQARGRA-RADESTYVLVTSSG 839
>MGI|MGI:2442858 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0002230 "positive regulation of defense response
to virus by host" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=ISO;IDA] [GO:0003727
"single-stranded RNA binding" evidence=ISO;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005923 "tight
junction" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=ISO] [GO:0009597 "detection of virus" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=ISO] [GO:0032587 "ruffle membrane"
evidence=ISO] [GO:0032727 "positive regulation of interferon-alpha
production" evidence=ISO] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISO;IMP] [GO:0039529 "RIG-I
signaling pathway" evidence=ISO] [GO:0042802 "identical protein
binding" evidence=ISO] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=ISO] [GO:0042995
"cell projection" evidence=IEA] [GO:0043330 "response to exogenous
dsRNA" evidence=IMP] [GO:0045087 "innate immune response"
evidence=ISO;IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2442858
GO:GO:0005829 GO:GO:0005524 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0009615 GO:GO:0030334 GO:GO:0005923
EMBL:AL831793 EMBL:CH466538 GO:GO:0003690 Reactome:REACT_107772
GO:GO:0032587 GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0042993 GO:GO:0043330 GO:GO:0032727 eggNOG:COG1111
GeneTree:ENSGT00510000046789 GO:GO:0032728 CTD:23586
HOGENOM:HOG000230911 HOVERGEN:HBG052325 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 GO:GO:0009597 GO:GO:0039529 EMBL:AY553221
EMBL:AK049305 EMBL:AK078287 EMBL:AK087261 IPI:IPI00273914
IPI:IPI00458717 IPI:IPI00655015 IPI:IPI00655142 RefSeq:NP_766277.3
UniGene:Mm.86382 PDB:3TBK PDBsum:3TBK ProteinModelPortal:Q6Q899
SMR:Q6Q899 STRING:Q6Q899 PhosphoSite:Q6Q899 PaxDb:Q6Q899
PRIDE:Q6Q899 DNASU:230073 Ensembl:ENSMUST00000037907 GeneID:230073
KEGG:mmu:230073 UCSC:uc008shh.1 UCSC:uc012dbu.1 InParanoid:A2AP28
EvolutionaryTrace:Q6Q899 NextBio:379764 Bgee:Q6Q899
CleanEx:MM_DDX58 Genevestigator:Q6Q899
GermOnline:ENSMUSG00000040296 Uniprot:Q6Q899
Length = 926
Score = 171 (65.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/155 (32%), Positives = 82/155 (52%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVGQ-----SSG 158
+L+ + L E TK I+F R +V + ++ P +K + G+ ++G
Sbjct: 618 VLQEEYHLKPE----TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATG 673
Query: 159 VTQQEQKEIMKKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK +++ FRA G+ N LIATSV +EG+DI E +LVI ++ + IKM+Q GR G
Sbjct: 674 MTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-G 732
Query: 218 RKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252
R R+ +C +L + + +M K E I+
Sbjct: 733 RARDSKCFLLTSSADVIEKEKANMIKEKIMNESIL 767
>UNIPROTKB|E2QXT4 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 OMA:ELRPYQW EMBL:AAEX03006454
Ensembl:ENSCAFT00000024900 Uniprot:E2QXT4
Length = 680
Score = 166 (63.5 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 54/165 (32%), Positives = 89/165 (53%)
Query: 105 EILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--P-LEPM-VKASMFVG-----Q 155
E+LE R ++ + IIF R + L+ P L+ + ++A + +G Q
Sbjct: 354 EMLEQILREQFGHSDSPRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADLLIGAGNSSQ 413
Query: 156 SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGR 215
++ +TQ++Q+E+++KFR G N L+ATSV EEGLDI + ++V+ + + I MVQ GR
Sbjct: 414 NTHMTQRDQQEVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLSNEISMVQARGR 473
Query: 216 TGRKRNGRCV--ILLTQG-----REAHN--FQTSMQTCKSYVEKI 251
R GR + + TQG RE N +T M+ + V+K+
Sbjct: 474 A---RAGRSIYSFVATQGSRELRRELINEVLETLMERAVAAVQKM 515
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 175 (66.7 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 45/174 (25%), Positives = 90/174 (51%)
Query: 102 RLREILES-HFRLH-AEKGETTK---VIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG 154
R R+++ S + + A GE K +++F R + + +LK P + + VG
Sbjct: 619 RYRKLISSLEYAISDASDGELQKDLRILVFVETRSGASNLTSMLKKEPFQEYLHTKRLVG 678
Query: 155 QSS--GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQR 212
+ G+ ++Q+ I++KFR G+ ++ T+V EEG+D+ + ++VIC+D S ++QR
Sbjct: 679 HNGDDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQR 738
Query: 213 LGRTGRKRNGRCVILLTQGREAH--NFQTSMQTCKSYVEKIINNKSIYANLAKN 264
GR K + +I+ ++ N +S + + +I++N+ A + KN
Sbjct: 739 RGRARSKNESKFIIIYNDDKDLKILNILSSENLLNNSINQILSNRERQA-ITKN 791
Score = 40 (19.1 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 362 LTQSSGEPVSAMDDEVVIVQNKIKPM 387
+ S EP+ ++++ + +N+IKP+
Sbjct: 1245 IVNESLEPLQGVNNKHPLHENRIKPI 1270
Score = 37 (18.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 250 KIINNKSIYANL 261
+IINN +Y++L
Sbjct: 2098 EIINNSKVYSSL 2109
>RGD|1310093 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0032480
"negative regulation of type I interferon production"
evidence=IEA;ISO] [GO:0032481 "positive regulation of type I
interferon production" evidence=IEA;ISO] [GO:0039534 "negative
regulation of MDA-5 signaling pathway" evidence=IEA;ISO]
[GO:0039536 "negative regulation of RIG-I signaling pathway"
evidence=IEA;ISO] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA;ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA;ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1310093 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0032480 GO:GO:0039534 GO:GO:0039536 GO:GO:0045824
GeneTree:ENSGT00510000046789 GO:GO:1900245 GO:GO:1900246 CTD:79132
KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15 GO:GO:0032481
IPI:IPI00371058 RefSeq:NP_001092258.1 UniGene:Rn.105654
Ensembl:ENSRNOT00000024718 GeneID:303538 KEGG:rno:303538
UCSC:RGD:1310093 NextBio:651548 Uniprot:D3ZD46
Length = 678
Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 49/141 (34%), Positives = 79/141 (56%)
Query: 105 EILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--P-LEPM-VKASMFVG-----Q 155
E+LE + T+ IIF R + + L+ P L+ + +K M +G Q
Sbjct: 352 EMLEGILLKQFGSPDHTRGIIFTRTRQTASSLLLWLRQQPCLQTVNIKPQMLIGAGNTGQ 411
Query: 156 SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGR 215
S+ +TQ++Q+E++++FR G+ N L+ATSV EEGLDI + ++V+ + + I MVQ GR
Sbjct: 412 STHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGR 471
Query: 216 TGRKRNGRCV--ILLTQG-RE 233
R G+ V + T+G RE
Sbjct: 472 A---RAGQSVYSFVATEGSRE 489
>SGD|S000001212 [details] [associations]
symbol:DBP8 "ATPase, putative RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001212 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:U00027 GO:GO:0030686
GO:GO:0004004 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
OrthoDB:EOG4PP1RW PIR:S48908 RefSeq:NP_012039.1
ProteinModelPortal:P38719 SMR:P38719 DIP:DIP-5628N IntAct:P38719
MINT:MINT-485349 STRING:P38719 PaxDb:P38719 PeptideAtlas:P38719
EnsemblFungi:YHR169W GeneID:856574 KEGG:sce:YHR169W CYGD:YHR169w
GeneTree:ENSGT00700000105515 OMA:FRNLCAI NextBio:982426
Genevestigator:P38719 GermOnline:YHR169W GO:GO:0000480
Uniprot:P38719
Length = 431
Score = 156 (60.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 49/128 (38%), Positives = 64/128 (50%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFD-VLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171
L E+ E IIF N R + AEI LK LE V AS+ S + QQE+ + +F
Sbjct: 247 LTCEEYENKTAIIFVN-RTMTAEILRRTLKQLEVRV-ASLH----SQMPQQERTNSLHRF 300
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
RA LIAT V GLDI ++LV+ +D P + R GRT R R G + +TQ
Sbjct: 301 RANAARILIATDVASRGLDIPTVELVVNYDIPSDPDVFIHRSGRTARAGRIGDAISFVTQ 360
Query: 231 GREAHNFQ 238
R+ Q
Sbjct: 361 -RDVSRIQ 367
>UNIPROTKB|F1NDV4 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR016024
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0004386 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925
GeneTree:ENSGT00510000046789 OMA:KCGQAWG EMBL:AADN02058700
EMBL:AADN02058701 EMBL:AADN02058702 IPI:IPI00579734
Ensembl:ENSGALT00000018067 Uniprot:F1NDV4
Length = 689
Score = 159 (61.0 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 47/126 (37%), Positives = 65/126 (51%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIF----DVLKPLEPMVKASMFVG 154
K ++LR L F K E + IIF R ++ D K E +KA +G
Sbjct: 359 KLMKLRNTLMEEFT----KTEEPRGIIFTKTRQSALALYHWIMDNPKFEEVGIKAHFLIG 414
Query: 155 -----QSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKM 209
++ +TQ EQ+E++ KFR G N LIAT+V EEGLDI E ++VI + + I M
Sbjct: 415 AGHNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAM 474
Query: 210 VQRLGR 215
VQ GR
Sbjct: 475 VQARGR 480
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 163 (62.4 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 52/141 (36%), Positives = 74/141 (52%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFD-VLKPLEPMV--KASMFVGQ 155
K ++L +IL S FRL K IIF N R+V A +L LE + K+ VG
Sbjct: 472 KLVQLIKIL-SVFRLEPHM----KCIIFVN-RIVTARTLSCILNNLELLRSWKSDFLVGL 525
Query: 156 SSGV---TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQR 212
SSG+ +++ + I+K+F++ E N L+AT VGEEGLDI LVI +D ++ +Q
Sbjct: 526 SSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQS 585
Query: 213 LGRTGRKRNGRCVILLTQGRE 233
GR R L+ G E
Sbjct: 586 RGRA-RMPQSEYAFLVDSGNE 605
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 162 (62.1 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 119 ETTKVIIFANYRVVVAE-IFDVLKPLEPMV--KASMFVGQSSG---VTQQEQKEIMKKFR 172
E K I+F R+ VA I ++L+ L+ + K VG SG +++ + I+++F
Sbjct: 416 ENMKCIVFVK-RITVARAISNILQNLKCLEFWKCEFLVGCHSGSKNMSRNKMDAIVQRFS 474
Query: 173 AGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGR 232
+GE N L+ATSVGEEGLDI LV+ FD ++ +Q GR R + V+LL +
Sbjct: 475 SGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSRGRA-RMTKSKYVVLLEREN 533
Query: 233 EAH 235
++H
Sbjct: 534 QSH 536
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 171 (65.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 44/174 (25%), Positives = 90/174 (51%)
Query: 102 RLREILES-HFRLH-AEKGETTK---VIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG 154
R R+++ S + + A GE K +++F R + + +LK P + + VG
Sbjct: 630 RYRKLISSLEYAISDASDGELQKDLRILVFVETRFGASNLTSMLKKEPFQEYLHTKRLVG 689
Query: 155 QSS--GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQR 212
+ G+ ++Q+ I++KFR G+ ++ T+V EEG+D+ + ++VIC+D S ++QR
Sbjct: 690 HNGVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQR 749
Query: 213 LGRTGRKRNGRCVILLTQGREAH--NFQTSMQTCKSYVEKIINNKSIYANLAKN 264
GR K + +I+ ++ + +S + + +I++N+ A + KN
Sbjct: 750 RGRARSKNESKFIIIYNDDKDLKILDILSSENLLNNSINQILSNRERQA-ITKN 802
Score = 40 (19.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 362 LTQSSGEPVSAMDDEVVIVQNKIKPM 387
+ S EP+ ++++ + +N+IKP+
Sbjct: 1230 IVNESLEPLQGVNNKHPLHENRIKPI 1255
Score = 37 (18.1 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 250 KIINNKSIYANL 261
+IINN +Y++L
Sbjct: 2084 EIINNSKVYSSL 2095
>UNIPROTKB|K7GMB7 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:CU856598
Ensembl:ENSSSCT00000033560 Uniprot:K7GMB7
Length = 588
Score = 156 (60.0 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 51/163 (31%), Positives = 88/163 (53%)
Query: 103 LREILESHFRLHAEKG-ETTKVIIFANYRVVVAEIFDVLK--P-LEPM-VKASMFVG--- 154
L+EIL+ F KG ++ + IIF R + L+ P L+ + ++A + +G
Sbjct: 354 LKEILQKQF-----KGPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQLLIGAGN 408
Query: 155 --QSSGVTQ---QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKM 209
QS+ +TQ ++Q+E+++KFR G N L+ATSV EEGLDI + ++V+ + + I M
Sbjct: 409 SSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISM 468
Query: 210 VQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252
VQ GR ++ + RE QT+ + +S +E+ +
Sbjct: 469 VQARGRARASQSVYSFVAAQGSRELRREQTN-EALESLMEQAV 510
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 160 (61.4 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 44/170 (25%), Positives = 84/170 (49%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSS 157
K +L E+L++ +R K ++ + +IF + + +K L P ++A F+G
Sbjct: 344 KVFKLLELLKATYR----KSDSVRTVIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGP 399
Query: 158 G------VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQ 211
+T + QK+ + KF+ G++N LIAT+V EEG+D+ +LVI F+ ++ + VQ
Sbjct: 400 SDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQ 459
Query: 212 RLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANL 261
GR + + L T+ H + + ++N +I+ +L
Sbjct: 460 SRGRARAMASKFLIFLNTEELLIHERILHEEKNLKFALSELSNSNIFDSL 509
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 54/190 (28%), Positives = 89/190 (46%)
Query: 92 EYAWSHLKFIRLREILESHFRL--HAEKGETTK-VIIFANYRVVVAEIFDVLKPLEPMVK 148
E A H ++I L + + F L H K E K I+F R VV+ + L L+ +
Sbjct: 215 EKAKIH-QWIHLADDKDHKFALLCHLLKQEDVKRAIVFVKTRDVVSSLEGQL--LQAGIP 271
Query: 149 ASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208
+ G + Q+++ + + +F GE N L+AT V G+DI +I VI FD +S
Sbjct: 272 CAFMRGD---MEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADT 328
Query: 209 MVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAKNGPRM 268
+ R+GRTGR I L EAH+ + + + Y+E+ + + I K+
Sbjct: 329 YIHRIGRTGRAGAKGTAISLA---EAHDMRI-VGKIERYIEQPLKRRIIEELRPKHKEAR 384
Query: 269 IPAHVTPRIK 278
+P ++K
Sbjct: 385 VPTKKKAKVK 394
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 54/190 (28%), Positives = 89/190 (46%)
Query: 92 EYAWSHLKFIRLREILESHFRL--HAEKGETTK-VIIFANYRVVVAEIFDVLKPLEPMVK 148
E A H ++I L + + F L H K E K I+F R VV+ + L L+ +
Sbjct: 215 EKAKIH-QWIHLADDKDHKFALLCHLLKQEDVKRAIVFVKTRDVVSSLEGQL--LQAGIP 271
Query: 149 ASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208
+ G + Q+++ + + +F GE N L+AT V G+DI +I VI FD +S
Sbjct: 272 CAFMRGD---MEQKKRFQALSRFTKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADT 328
Query: 209 MVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAKNGPRM 268
+ R+GRTGR I L EAH+ + + + Y+E+ + + I K+
Sbjct: 329 YIHRIGRTGRAGAKGTAISLA---EAHDMRI-VGKIERYIEQPLKRRIIEELRPKHKEAR 384
Query: 269 IPAHVTPRIK 278
+P ++K
Sbjct: 385 VPTKKKAKVK 394
>UNIPROTKB|F1S0P6 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0045824 "negative regulation
of innate immune response" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0039534
"negative regulation of MDA-5 signaling pathway" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 OMA:ELRPYQW GO:GO:0032481 EMBL:CU856598
Ensembl:ENSSSCT00000018960 Ensembl:ENSSSCT00000035155
Uniprot:F1S0P6
Length = 681
Score = 156 (60.0 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 51/163 (31%), Positives = 88/163 (53%)
Query: 103 LREILESHFRLHAEKG-ETTKVIIFANYRVVVAEIFDVLK--P-LEPM-VKASMFVG--- 154
L+EIL+ F KG ++ + IIF R + L+ P L+ + ++A + +G
Sbjct: 354 LKEILQKQF-----KGPKSPRGIIFTRTRQSAHSLLLWLQQQPSLQTVDIRAQLLIGAGN 408
Query: 155 --QSSGVTQ---QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKM 209
QS+ +TQ ++Q+E+++KFR G N L+ATSV EEGLDI + ++V+ + + I M
Sbjct: 409 SSQSTPMTQMTQRDQQEVIQKFRTGALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISM 468
Query: 210 VQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252
VQ GR ++ + RE QT+ + +S +E+ +
Sbjct: 469 VQARGRARASQSVYSFVAAQGSRELRREQTN-EALESLMEQAV 510
>UNIPROTKB|E2RNK0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045087 "innate immune response"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001315 InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619 Pfam:PF04851
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0042981 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043021 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016925 GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647
OMA:KCGQAWG EMBL:AAEX03017717 RefSeq:XP_545493.2
Ensembl:ENSCAFT00000016597 GeneID:488371 KEGG:cfa:488371
Uniprot:E2RNK0
Length = 1029
Score = 158 (60.7 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 51/126 (40%), Positives = 68/126 (53%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYR---VVVAE-IFDVLKPLEPMVKASMFVG 154
K I+LR + F E E + IIF R +++ I + K E VKA +G
Sbjct: 703 KLIKLRNTIMEQFT-RTE--EPARGIIFTKTRQSAFALSQWITENKKFAEVGVKAHHLIG 759
Query: 155 --QSSG---VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKM 209
SS +TQ EQKE++ KFR G+ N LIAT+V EEGLDI E ++VI + + I M
Sbjct: 760 AGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAM 819
Query: 210 VQRLGR 215
VQ GR
Sbjct: 820 VQARGR 825
>CGD|CAL0004058 [details] [associations]
symbol:DBP8 species:5476 "Candida albicans" [GO:0030686 "90S
preribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000447 "endonucleolytic cleavage in ITS1 to separate SSU-rRNA
from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004058 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AACQ01000165 EMBL:AACQ01000186
RefSeq:XP_711718.1 RefSeq:XP_712192.1 ProteinModelPortal:Q59PR3
STRING:Q59PR3 GeneID:3646191 GeneID:3646692 KEGG:cal:CaO19.13973
KEGG:cal:CaO19.6652 KO:K14778 Uniprot:Q59PR3
Length = 440
Score = 153 (58.9 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 46/149 (30%), Positives = 77/149 (51%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFD-VLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171
LH E+ + + +IF N R AE+ +L+ L+ V AS+ S + Q E+ + +F
Sbjct: 246 LHLEQFKDSTAVIFVN-RTTTAEVLRRMLRKLDFRV-ASLH----SEMPQSERTNSLHRF 299
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
+AG LIAT V GLDI ++LVI FD P + R+GRT R R G V ++ +
Sbjct: 300 KAGAARILIATDVASRGLDIPTVELVINFDIPADPDDFIHRVGRTARAGRKGDAVSIIGE 359
Query: 231 GREAHNFQTSMQTCKSYVEKI--INNKSI 257
++ Q+ + +E + +N+ ++
Sbjct: 360 -KDIDRIQSIEERINKKMELLEDVNDDNV 387
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 158 (60.7 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 47/139 (33%), Positives = 72/139 (51%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
KF+RL E+L + + ++ E + +IF + + E D L E M K + G
Sbjct: 774 KFVRLLELLGNLYS--TDENEDARSLIFVDRQ----EAADTLLR-ELMRKGYPCMSIHGG 826
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
Q ++ ++ F+AG F LIATSV GLD+ ++ LV+ +DA V R GRTGR
Sbjct: 827 KDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGR 886
Query: 219 KRN-GRCVILLTQGREAHN 236
N G V LT+ +E ++
Sbjct: 887 AGNTGTAVTFLTEDQERYS 905
>MGI|MGI:1931560 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO;IDA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=ISO;IMP]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IMP] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=ISO] [GO:0039536 "negative regulation of RIG-I
signaling pathway" evidence=ISO;IMP] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=ISO;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IMP] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IMP] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1931560 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 eggNOG:COG1111 GeneTree:ENSGT00510000046789
GO:GO:1900245 GO:GO:1900246 CTD:79132 HOGENOM:HOG000230992
HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15
GO:GO:0032481 EMBL:AF316999 EMBL:AF317000 EMBL:AL591469
EMBL:BC029209 IPI:IPI00319899 RefSeq:NP_084426.2 UniGene:Mm.271830
ProteinModelPortal:Q99J87 SMR:Q99J87 STRING:Q99J87
PhosphoSite:Q99J87 PaxDb:Q99J87 PRIDE:Q99J87
Ensembl:ENSMUST00000017974 GeneID:80861 KEGG:mmu:80861
InParanoid:A2A5E9 NextBio:350167 Bgee:Q99J87 CleanEx:MM_DHX58
Genevestigator:Q99J87 GermOnline:ENSMUSG00000017830 Uniprot:Q99J87
Length = 678
Score = 155 (59.6 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 46/143 (32%), Positives = 79/143 (55%)
Query: 121 TKVIIFANYRVVVAEIFDVLK--P-LEPM-VKASMFVG-----QSSGVTQQEQKEIMKKF 171
T+ IIF R + + L+ P L+ + +K M +G QS+ +TQ++Q+E++++F
Sbjct: 368 TRGIIFTRTRQTASSLLLWLRQQPCLQTVGIKPQMLIGAGNTSQSTHMTQKDQQEVIQEF 427
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCV--ILLT 229
R G + L+ATSV EEGLDI + ++V+ + + I MVQ GR R G+ V L T
Sbjct: 428 RDGILSLLVATSVAEEGLDIAQCNVVVRYGLLTNEISMVQARGRA---RAGQSVYSFLAT 484
Query: 230 QGREAHNFQTSMQTCKSYVEKII 252
+G + + + + +EK +
Sbjct: 485 EGSREMKRELTNEALEVLMEKAV 507
>UNIPROTKB|Q9GLV6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0032587 "ruffle membrane"
evidence=ISS] [GO:0015629 "actin cytoskeleton" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0003727
"single-stranded RNA binding" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] [GO:0030334 "regulation
of cell migration" evidence=ISS] [GO:0039529 "RIG-I signaling
pathway" evidence=ISS] [GO:0045087 "innate immune response"
evidence=ISS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISS] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0015629 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0032727 GO:GO:0032728
HOVERGEN:HBG052325 GO:GO:0039529 EMBL:AF181119 UniGene:Ssc.15885
ProteinModelPortal:Q9GLV6 SMR:Q9GLV6 Uniprot:Q9GLV6
Length = 940
Score = 156 (60.0 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 45/130 (34%), Positives = 70/130 (53%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSG 158
IL+ + L+ E T+ I+F R +V + +K P +K S+ G Q+ G
Sbjct: 620 ILQEEYHLNPE----TRTILFVKTRALVDALKKWIKENPKLSFLKPSILTGRGKTNQNIG 675
Query: 159 VTQQEQKEIMKKFRAGEFNT-LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK ++ FR + N LI TSV +EG+DI + +LVI ++ + IKM+Q GR G
Sbjct: 676 MTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 734
Query: 218 RKRNGRCVIL 227
R R +C +L
Sbjct: 735 RARGSKCFLL 744
>UNIPROTKB|I3LGW3 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00510000046789 OMA:KCKAFAC
EMBL:FP340205 Ensembl:ENSSSCT00000026775 Uniprot:I3LGW3
Length = 960
Score = 156 (60.0 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 45/130 (34%), Positives = 70/130 (53%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSG 158
IL+ + L+ E T+ I+F R +V + +K P +K S+ G Q+ G
Sbjct: 621 ILQEEYHLNPE----TRTILFVKTRALVDALKKWIKENPKLSFLKPSILTGRGKTNQNIG 676
Query: 159 VTQQEQKEIMKKFRAGEFNT-LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK ++ FR + N LI TSV +EG+DI + +LVI ++ + IKM+Q GR G
Sbjct: 677 MTLPAQKCVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 735
Query: 218 RKRNGRCVIL 227
R R +C +L
Sbjct: 736 RARGSKCFLL 745
>ZFIN|ZDB-GENE-081104-438 [details] [associations]
symbol:ifih1 "interferon induced with helicase C
domain 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-081104-438
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 EMBL:AL954669 EMBL:CABZ01064081
EMBL:CABZ01064082 EMBL:CABZ01064083 IPI:IPI00492508
Ensembl:ENSDART00000003913 Uniprot:F1R4B9
Length = 997
Score = 156 (60.0 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 45/122 (36%), Positives = 70/122 (57%)
Query: 147 VKASMFVG---QS--SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFD 201
V+AS +G QS +T EQK+++K+FR GE N LIAT+V EEGLDI E ++VI +
Sbjct: 712 VRASYLIGGGDQSVVKPMTAAEQKDVLKRFRTGEINLLIATTVAEEGLDIAECNVVIRYC 771
Query: 202 AQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANL 261
+ + M+Q GR GR + ++ EA + ++ Y EK+++ K+I A +
Sbjct: 772 LVTNEVAMIQARGR-GRAEDSSYTLVA----EAGSGVAERESVNEYREKMMS-KAI-AKV 824
Query: 262 AK 263
K
Sbjct: 825 CK 826
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 151 (58.2 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 51/161 (31%), Positives = 78/161 (48%)
Query: 102 RLREILESHFRLHAEKGETTKVIIFANYRVVVAE-IFDVLKPLEPMVKASMFVGQSSGVT 160
++RE H E + + IIF N R AE I+ +L+ LE V S +
Sbjct: 241 QVREAYLVHLLTIPENAKKS-AIIFVN-RTRTAELIYSILRLLELRVTEL-----HSEMV 293
Query: 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK- 219
Q+E+ + +FRA L+AT V GLDI + LVI FD + P + R+GRT R
Sbjct: 294 QRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAG 353
Query: 220 RNGRCVILLTQGREA---HNFQTSMQTCKSYVEKIINNKSI 257
R+G + ++T+ R+ H + + T S E + NK +
Sbjct: 354 RSGESISIVTE-RDVDLVHAIEDRVGTKLSEYEHVSENKML 393
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 152 (58.6 bits), Expect = 8.1e-08, P = 8.1e-08
Identities = 43/148 (29%), Positives = 70/148 (47%)
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178
ET V+IFA + + D + AS+ ++Q + +M+ FR G F
Sbjct: 238 ETKSVLIFARTKYGAENLADEISRAG-FTTASL----QGNLSQNRRHAVMEGFRRGNFKI 292
Query: 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQGREAHNF 237
L+AT + GLDI I VI +D +P R+GRTGR R G+ + L+T GR+
Sbjct: 293 LVATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVT-GRDGDMV 351
Query: 238 QTSMQTCKSYVEKIINNKSIYANLAKNG 265
+ + S ++++ + YA +G
Sbjct: 352 RDIQKLINSPIQRLRVDGFDYATTRNDG 379
>UNIPROTKB|E1BJZ0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0042981 "regulation
of apoptotic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0042981
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0045087
GO:GO:0009615 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016925 GeneTree:ENSGT00510000046789
CTD:64135 KO:K12647 OMA:KCGQAWG EMBL:DAAA02004416 IPI:IPI00702873
RefSeq:XP_002685384.1 RefSeq:XP_615590.2 UniGene:Bt.24098
Ensembl:ENSBTAT00000010703 GeneID:535490 KEGG:bta:535490
NextBio:20876765 Uniprot:E1BJZ0
Length = 1021
Score = 158 (60.7 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 54/143 (37%), Positives = 75/143 (52%)
Query: 99 KFIRLRE-ILESHFRLHAEKGETTKVIIFANYR---VVVAE-IFDVLKPLEPMVKASMFV 153
K I+LR I+E + R + + IIF R +++ I + K E VKA +
Sbjct: 695 KLIKLRNTIMEQYSRTEG----SARGIIFTKTRQSAYALSQWIIENEKFSEVGVKAHHLI 750
Query: 154 G--QSSG---VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208
G SS +TQ EQKE++ KFR G+ N LIAT+V EEGLDI E ++VI + + I
Sbjct: 751 GAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIA 810
Query: 209 MVQRLGRTGRKRNGRCVILLTQG 231
MVQ GR R V++ G
Sbjct: 811 MVQARGRA-RADESTYVLVAQSG 832
Score = 41 (19.5 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 353 KKKKTFIDFLTQSSGEPVSAMDDEVVI 379
K K + I+FL ++ G P + +D VI
Sbjct: 892 KGKPSLINFLCKNCGVPACSGEDIHVI 918
>UNIPROTKB|Q96C10 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IMP;IDA] [GO:0003725 "double-stranded RNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0045088 "regulation of innate immune response"
evidence=IDA] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:0032480 "negative regulation of type I
interferon production" evidence=IDA] [GO:0045824 "negative
regulation of innate immune response" evidence=IDA] [GO:0032481
"positive regulation of type I interferon production" evidence=ISS]
[GO:0009615 "response to virus" evidence=ISS] [GO:1900245 "positive
regulation of MDA-5 signaling pathway" evidence=ISS] [GO:1900246
"positive regulation of RIG-I signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0019048 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534
GO:GO:0039536 GO:GO:0045824 eggNOG:COG1111 GO:GO:1900245
GO:GO:1900246 EMBL:AK021416 EMBL:BC014949 IPI:IPI00303746
RefSeq:NP_077024.2 UniGene:Hs.55918 PDB:2RQA PDB:2W4R PDB:3EQT
PDBsum:2RQA PDBsum:2W4R PDBsum:3EQT ProteinModelPortal:Q96C10
SMR:Q96C10 IntAct:Q96C10 MINT:MINT-1460040 STRING:Q96C10
PhosphoSite:Q96C10 DMDM:50401123 PaxDb:Q96C10 PRIDE:Q96C10
DNASU:79132 Ensembl:ENST00000251642 Ensembl:ENST00000563880
GeneID:79132 KEGG:hsa:79132 UCSC:uc002hyw.3 CTD:79132
GeneCards:GC17M040255 HGNC:HGNC:29517 HPA:HPA018670 HPA:HPA019570
MIM:608588 neXtProt:NX_Q96C10 PharmGKB:PA162383566
HOGENOM:HOG000230992 HOVERGEN:HBG106019 InParanoid:Q96C10 KO:K12649
OMA:ELRPYQW OrthoDB:EOG44QT15 ChiTaRS:DHX58
EvolutionaryTrace:Q96C10 GenomeRNAi:79132 NextBio:67993
ArrayExpress:Q96C10 Bgee:Q96C10 CleanEx:HS_DHX58
Genevestigator:Q96C10 GermOnline:ENSG00000108771 GO:GO:0032481
Uniprot:Q96C10
Length = 678
Score = 150 (57.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 48/163 (29%), Positives = 82/163 (50%)
Query: 105 EILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM----VKASMFVG-----Q 155
E+LE + + + IIF R + L+ + + ++A + +G Q
Sbjct: 352 EMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLLIGAGNSSQ 411
Query: 156 SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGR 215
S+ +TQ++Q+E+++KF+ G N L+ATSV EEGLDI ++V+ + + I MVQ GR
Sbjct: 412 STHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISMVQARGR 471
Query: 216 TGRKRNGRCVILLTQG-----REAHN--FQTSMQTCKSYVEKI 251
R + T+G RE N +T M+ + V+K+
Sbjct: 472 A-RADQSVYAFVATEGSRELKRELINEALETLMEQAVAAVQKM 513
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 154 (59.3 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 485 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVS 544
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
I+L FQ ++T K+ +EKI+ NK
Sbjct: 545 N--YIMLADSERTKTFQEDLKTYKA-IEKILRNK 575
>RGD|1309460 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR007087 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00780835
Ensembl:ENSRNOT00000060764 UCSC:RGD:1309460 ArrayExpress:D4ADT6
Uniprot:D4ADT6
Length = 922
Score = 150 (57.9 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 44/140 (31%), Positives = 73/140 (52%)
Query: 121 TKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSGVTQQEQKEIMKKFRA 173
TK I+F R +V + ++ P +K + G Q++G+T QK +++ FRA
Sbjct: 625 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRA 684
Query: 174 G-EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGR 232
+ N LIATSV +E +DI + +LVI ++ + I M+Q GR GR R+ +C +L +
Sbjct: 685 NADNNILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGR-GRARDSKCFLLTSSAD 743
Query: 233 EAHNFQTSMQTCKSYVEKII 252
+ +M K E I+
Sbjct: 744 VIEKEKANMVKEKIMNESIL 763
>UNIPROTKB|Q9BYX4 [details] [associations]
symbol:IFIH1 "Interferon-induced helicase C
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016925 "protein
sumoylation" evidence=IDA] [GO:0039528 "cytoplasmic pattern
recognition receptor signaling pathway in response to virus"
evidence=TAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP;TAS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=IMP;TAS] [GO:0003725
"double-stranded RNA binding" evidence=IDA;TAS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0034344 "regulation
of type III interferon production" evidence=TAS] [GO:0009615
"response to virus" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0032480 "negative regulation of type I interferon production"
evidence=TAS] [GO:0009597 "detection of virus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 Reactome:REACT_6900 GO:GO:0019048 GO:GO:0042981
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 Reactome:REACT_107772 GO:GO:0003725 GO:GO:0004386
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0016925 GO:GO:0032727 eggNOG:COG1111 GO:GO:0032728
GO:GO:0009597 GO:GO:0034344 HOGENOM:HOG000230992 HOVERGEN:HBG106019
EMBL:AF095844 EMBL:AY017378 EMBL:BC046208 EMBL:BC078180
EMBL:BC111750 EMBL:AK056293 IPI:IPI00005577 IPI:IPI00556546
RefSeq:NP_071451.2 UniGene:Hs.163173 PDB:2RQB PDB:3B6E PDB:3GA3
PDB:4GL2 PDBsum:2RQB PDBsum:3B6E PDBsum:3GA3 PDBsum:4GL2
ProteinModelPortal:Q9BYX4 SMR:Q9BYX4 DIP:DIP-42607N IntAct:Q9BYX4
MINT:MINT-3381993 STRING:Q9BYX4 PhosphoSite:Q9BYX4 DMDM:134047802
PaxDb:Q9BYX4 PRIDE:Q9BYX4 Ensembl:ENST00000263642
Ensembl:ENST00000421365 Ensembl:ENST00000543192 GeneID:64135
KEGG:hsa:64135 UCSC:uc002uce.3 UCSC:uc002ucf.3 CTD:64135
GeneCards:GC02M163123 HGNC:HGNC:18873 HPA:HPA002656 MIM:606951
MIM:610155 neXtProt:NX_Q9BYX4 PharmGKB:PA134889215
InParanoid:Q9BYX4 KO:K12647 OMA:KCGQAWG OrthoDB:EOG48KR9P
PhylomeDB:Q9BYX4 ChiTaRS:IFIH1 EvolutionaryTrace:Q9BYX4
GenomeRNAi:64135 NextBio:66034 ArrayExpress:Q9BYX4 Bgee:Q9BYX4
CleanEx:HS_IFIH1 Genevestigator:Q9BYX4 GermOnline:ENSG00000115267
GO:GO:0039528 Uniprot:Q9BYX4
Length = 1025
Score = 156 (60.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 51/127 (40%), Positives = 70/127 (55%)
Query: 99 KFIRLRE-ILESHFRLHAEKGETTKVIIFANYR---VVVAE-IFDVLKPLEPMVKASMFV 153
K +LR I+E + R E+ + IIF R +++ I + K E VKA +
Sbjct: 700 KLTKLRNTIMEQYTRTE----ESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLI 755
Query: 154 G--QSSG---VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK 208
G SS +TQ EQKE++ KFR G+ N LIAT+V EEGLDI E ++VI + + I
Sbjct: 756 GAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIA 815
Query: 209 MVQRLGR 215
MVQ GR
Sbjct: 816 MVQARGR 822
Score = 38 (18.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 224 CVILLTQGREAHNF-QTSMQTCKSYVEKIINNKSIYANLAKNGPRMI 269
CV + AH + MQ S +EK + K A KN P +I
Sbjct: 860 CVQNMKPEEYAHKILELQMQ---SIMEKKMKTKRNIAKHYKNNPSLI 903
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 145 (56.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G ++Q+E+ + +K F+AG+ L+AT V GLDI ++ VI FD ++P + R+
Sbjct: 268 GLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRI 327
Query: 214 GRTGRK-RNGRCVILL 228
GRTGR R G+ + L+
Sbjct: 328 GRTGRAGREGKAITLI 343
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 145 (56.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G ++Q+E+ + +K F+AG+ L+AT V GLDI ++ VI FD ++P + R+
Sbjct: 268 GLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRI 327
Query: 214 GRTGRK-RNGRCVILL 228
GRTGR R G+ + L+
Sbjct: 328 GRTGRAGREGKAITLI 343
>UNIPROTKB|D4A8D9 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR007087
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00952196
Ensembl:ENSRNOT00000065299 ArrayExpress:D4A8D9 Uniprot:D4A8D9
Length = 704
Score = 148 (57.2 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSGVTQQEQKEIMKKFRA 173
TK I+F R +V + ++ P +K + G Q++G+T QK +++ FRA
Sbjct: 581 TKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNQATGMTLPAQKCVLEAFRA 640
Query: 174 G-EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVIL 227
+ N LIATSV +E +DI + +LVI ++ + I M+Q GR GR R+ +C +L
Sbjct: 641 NADNNILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGR-GRARDSKCFLL 694
>GENEDB_PFALCIPARUM|PFE0215w [details] [associations]
symbol:PFE0215w "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 148 (57.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 43/145 (29%), Positives = 67/145 (46%)
Query: 117 KGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176
K +VIIF ++ D+L E K+ F + Q ++ M++FR G F
Sbjct: 429 KSNGGQVIIFTRTKLEA----DILCS-EGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMF 483
Query: 177 NTLIATSVGEEGLDIGEIDLVI-CFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAH 235
LIAT + GLDI +DLVI CF S + + R GRTGR ++L +
Sbjct: 484 QILIATDIASRGLDISNVDLVIQCFPPNYSAV-YIHRAGRTGRANKKGTSLVLYSNEDKQ 542
Query: 236 NFQTSMQTC--KSYVEKIINNKSIY 258
+ + C K +E + NN+ ++
Sbjct: 543 DLIKIEKNCGIKFNMETLPNNEQVF 567
>UNIPROTKB|Q8I457 [details] [associations]
symbol:PFE0215w "ATP-dependent helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0006200 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GO:GO:0020011 KO:K01509 RefSeq:XP_001351602.1
ProteinModelPortal:Q8I457 EnsemblProtists:PFE0215w:mRNA
GeneID:812915 KEGG:pfa:PFE0215w EuPathDB:PlasmoDB:PF3D7_0504400
HOGENOM:HOG000284069 ProtClustDB:CLSZ2431865 Uniprot:Q8I457
Length = 755
Score = 148 (57.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 43/145 (29%), Positives = 67/145 (46%)
Query: 117 KGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEF 176
K +VIIF ++ D+L E K+ F + Q ++ M++FR G F
Sbjct: 429 KSNGGQVIIFTRTKLEA----DILCS-EGSFKSLSFAVLHGNIAQSTREYTMQRFRQGMF 483
Query: 177 NTLIATSVGEEGLDIGEIDLVI-CFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAH 235
LIAT + GLDI +DLVI CF S + + R GRTGR ++L +
Sbjct: 484 QILIATDIASRGLDISNVDLVIQCFPPNYSAV-YIHRAGRTGRANKKGTSLVLYSNEDKQ 542
Query: 236 NFQTSMQTC--KSYVEKIINNKSIY 258
+ + C K +E + NN+ ++
Sbjct: 543 DLIKIEKNCGIKFNMETLPNNEQVF 567
>WB|WBGene00008400 [details] [associations]
symbol:drh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0035188 "hatching" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0070063 "RNA polymerase binding" evidence=IPI] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0035188 GO:GO:0040010 GO:GO:0003727 GO:GO:0006974
GO:GO:0003725 GO:GO:0000794 GO:GO:0030422 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
GO:GO:0043186 GO:GO:0008186 eggNOG:COG1111
GeneTree:ENSGT00510000046789 KO:K12646 EMBL:Z79752 GO:GO:0070090
PIR:T20332 RefSeq:NP_492161.3 ProteinModelPortal:Q93413 SMR:Q93413
IntAct:Q93413 MINT:MINT-6178703 STRING:Q93413 PaxDb:Q93413
EnsemblMetazoa:D2005.5 GeneID:172546 KEGG:cel:CELE_D2005.5
UCSC:D2005.5 CTD:172546 WormBase:D2005.5 HOGENOM:HOG000018535
InParanoid:Q93413 OMA:ACNLIIK NextBio:875985 Uniprot:Q93413
Length = 1119
Score = 149 (57.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 56/200 (28%), Positives = 93/200 (46%)
Query: 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVL---KPL-------EPMVKAS 150
+RL+ L + F + E ++VIIF R + D L K L E MV
Sbjct: 745 LRLKNTLTNQFHVAPE----SRVIIFVTQRSTAQRVSDFLNESKVLDQFGNYGEQMVGYV 800
Query: 151 MFVGQSSGV--TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-SPI 207
+ + V T QEQ+ + KF G ++ATSV EEGLD+ +L+I ++ S I
Sbjct: 801 LGTNKQGAVQQTSQEQQLTLDKFNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGSAI 860
Query: 208 KMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNKSIYANLAKNGPR 267
++VQ+ GR R +N R V+L + + +T+ + Y+ + + +NG +
Sbjct: 861 QLVQQRGRA-RAKNSRSVLLSVKS-SINETETNALISEKYMRLCVKK------ITENGEK 912
Query: 268 MIPAHVTPRIKCLHIVVKDR 287
+ A V R+ L+ + R
Sbjct: 913 QLAAEVK-RVAELNAAERKR 931
>UNIPROTKB|F1MKU1 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0042993 "positive regulation of transcription
factor import into nucleus" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0039529 "RIG-I signaling
pathway" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=IEA]
[GO:0032587 "ruffle membrane" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0009597 "detection of virus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005923 "tight
junction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0015629 GO:GO:0008270 GO:GO:0003727 GO:GO:0045944
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0003690 GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0042993
GO:GO:0043330 GO:GO:0032727 GeneTree:ENSGT00510000046789
GO:GO:0032728 OMA:KCKAFAC GO:GO:0009597 GO:GO:0039529
EMBL:DAAA02021991 IPI:IPI00716102 Ensembl:ENSBTAT00000061377
Uniprot:F1MKU1
Length = 942
Score = 148 (57.2 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 48/156 (30%), Positives = 79/156 (50%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSG 158
IL+ + L+ E T+ I+F R + + + ++ P +K + G Q+ G
Sbjct: 620 ILQEEYHLNPE----TRTILFVKTRALFQALKNWIEENPKLSFLKPGILTGRGRTNQTMG 675
Query: 159 VTQQEQKEIMKKFRAG-EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK + FR + LIATSV +EG+DI + +LVI ++ + IKM+Q GR G
Sbjct: 676 MTLPAQKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-G 734
Query: 218 RKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIIN 253
R R +C LLT + + + C+ EK++N
Sbjct: 735 RARGSKC-FLLTSNADVIE-KEKLNICQ---EKMMN 765
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 151 (58.2 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 42/138 (30%), Positives = 74/138 (53%)
Query: 119 ETTKVIIFANYRVVVAEIFD-VLKPLEPM--VKASMFVGQSSGVTQQ--EQKEIMKKFRA 173
E + IIF RVV A + VL L + ++ + +G ++ + + ++ + KFR
Sbjct: 640 EDFRAIIFVE-RVVTALVLPKVLAELPSLSFIRCASLIGHNNNQEMRACQMQDTISKFRD 698
Query: 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGRE 233
G L+ATSV EEGLDI + ++VI FD K+ + +Q GR RK +++L +G
Sbjct: 699 GRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRA-RKPGSDYILMLERGNI 757
Query: 234 AHNFQTSMQTCKSYVEKI 251
+H +T ++ ++ E +
Sbjct: 758 SH--ETFLRNARNSEETL 773
>DICTYBASE|DDB_G0294407 [details] [associations]
symbol:helF "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0040029 "regulation of gene
expression, epigenetic" evidence=IMP] [GO:0031149 "sorocarp stalk
cell differentiation" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00358 SMART:SM00490
InterPro:IPR014720 dictyBase:DDB_G0294407 GO:GO:0005524
GO:GO:0005634 Gene3D:3.30.160.20 GenomeReviews:CM000151_GR
EMBL:AAFI02000008 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0040029 GO:GO:0008026 GO:GO:0003724
GO:GO:0031149 eggNOG:COG1111 RefSeq:XP_001134628.1
ProteinModelPortal:Q86L44 EnsemblProtists:DDB0233379 GeneID:8618629
KEGG:ddi:DDB_G0294407 OMA:ANIQSRG ProtClustDB:CLSZ2733552
Uniprot:Q86L44
Length = 837
Score = 152 (58.6 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 44/150 (29%), Positives = 76/150 (50%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLE-----PMVKASMFVGQSS--GVTQQEQK 165
L +K + K IIF R V +++ +L L +K ++ VG S G++ QK
Sbjct: 574 LDEKKSDDLKAIIFVKTRDVAKKVYSLLDQLRMGDRFSFIKPNLVVGHGSIGGMSISSQK 633
Query: 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRC- 224
+ +++FR+ + N ++ATSV EEG D+ E ++VI D + +Q GR R R+
Sbjct: 634 KAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLDPPTTVTANIQSRGRL-RNRDSYFY 692
Query: 225 -VILLTQGREAHNFQTSMQTCKSYVEKIIN 253
++ + RE N + + Y+E+ IN
Sbjct: 693 GIVKVDDPRE-DNIYEFFKNQERYLEEAIN 721
Score = 38 (18.4 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 26 QRDFHVTHSLASALENLVTYGLRSFYNNLVEVSKEDGS 63
Q + S+ S ++ + L+E K DG+
Sbjct: 111 QLTYQTKQSIDSLFSKFISIDKNKIKDELIEKQKNDGN 148
>RGD|1310934 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005886
"plasma membrane" evidence=ISO] InterPro:IPR001650
InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 RGD:1310934 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
GO:GO:0004386 eggNOG:COG0513 EMBL:BC091427 IPI:IPI00764536
UniGene:Rn.98470 SMR:Q5BJM0 Ensembl:ENSRNOT00000057582
UCSC:RGD:1310934 HOGENOM:HOG000137600 NextBio:677841
Genevestigator:Q5BJM0 Uniprot:Q5BJM0
Length = 380
Score = 142 (55.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 45/123 (36%), Positives = 58/123 (47%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKF 171
L G + IIF + V E+ + P +K + G Q Q+EI +K F
Sbjct: 25 LQVYSGSEGRAIIFCETKKNVTEM-----AMNPHIKQNAQC--LHGDIAQSQREITLKGF 77
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
R G F L+AT+V GLDI E+DLVI + + R GRTGR R G CV Q
Sbjct: 78 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFY-Q 136
Query: 231 GRE 233
RE
Sbjct: 137 PRE 139
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 147 (56.8 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 34/97 (35%), Positives = 52/97 (53%)
Query: 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181
K+I+F ++ V +I +++ A+ G TQ E+ ++K FR G+ N LIA
Sbjct: 493 KIIVFVETKIKVEDILQIIRA--EGYNATSIHGDK---TQNERDSVLKDFRNGKSNILIA 547
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
T V GLD+ ++ VI +D S V R+GRTGR
Sbjct: 548 TDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGR 584
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 141 (54.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E+ EIMK+FRAG+ L
Sbjct: 266 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVL 319
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I T V G+D+ ++ LVI +D + + R+GR+GR
Sbjct: 320 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 358
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 141 (54.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 37/112 (33%), Positives = 61/112 (54%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ ++F N R V + D +K +A+ V G + Q+++ E+MK+FRAG L
Sbjct: 266 TQAVLFCNTRRKVDWLTDKMK------EANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVL 319
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQ 230
I+T V GLD+ ++ LVI +D + + R+GR+GR R G + + Q
Sbjct: 320 ISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQ 371
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 141 (54.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 37/112 (33%), Positives = 61/112 (54%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ ++F N R V + D +K +A+ V G + Q+++ E+MK+FRAG L
Sbjct: 266 TQAVLFCNTRRKVDWLTDKMK------EANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVL 319
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQ 230
I+T V GLD+ ++ LVI +D + + R+GR+GR R G + + Q
Sbjct: 320 ISTDVWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKQ 371
>UNIPROTKB|E2RMV6 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 OMA:KCKAFAC EMBL:AAEX03007933
Ensembl:ENSCAFT00000002841 Uniprot:E2RMV6
Length = 929
Score = 146 (56.5 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 47/157 (29%), Positives = 80/157 (50%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM--VKASMFVGQ-----SSG 158
IL+ + L+ E ++ I+F R +V + ++ + +K + G+ ++G
Sbjct: 621 ILQEEYHLNPE----SRTILFVKTRALVDALKKWIEENSELSFLKPGILTGRGKTNHNTG 676
Query: 159 VTQQEQKEIMKKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
+T QK + FR G+ LIATSV +EG+DI + +LVI ++ + I+M+Q GR G
Sbjct: 677 MTLPAQKCALDAFRTDGDKKILIATSVADEGIDIAQCNLVILYEYVGNVIRMIQTRGR-G 735
Query: 218 RKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINN 254
R R +C LLT + + Y EKI+N+
Sbjct: 736 RARGSKC-FLLTSNADV----IKKEKLNIYKEKIMND 767
>UNIPROTKB|E1C6M6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00680000100003
EMBL:AADN02028008 IPI:IPI00822651 ProteinModelPortal:E1C6M6
Ensembl:ENSGALT00000040808 OMA:DWLENEA ArrayExpress:E1C6M6
Uniprot:E1C6M6
Length = 294
Score = 138 (53.6 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 34/78 (43%), Positives = 43/78 (55%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+E+ +K FR G F LIAT+V GLDI E+DLVI K + R GRT
Sbjct: 126 GDIPQKQREVTLKGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRT 185
Query: 217 GRK-RNGRCVILLTQGRE 233
GR R G C+ + E
Sbjct: 186 GRAGRTGICICFYQRKEE 203
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 143 (55.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 38/131 (29%), Positives = 64/131 (48%)
Query: 104 REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQE 163
R IL ++A+ G+T I+F + + +V L + G ++Q +
Sbjct: 338 RTILSDLITVYAKGGKT---IVFTQTK---RDADEVSLALSNSIATEALHGD---ISQHQ 388
Query: 164 QKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNG 222
++ + FR G+F L+AT V GLDI +DLVI ++ P V R GRTGR + G
Sbjct: 389 RERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEG 448
Query: 223 RCVILLTQGRE 233
+++ T ++
Sbjct: 449 SAILMHTSSQK 459
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 42/140 (30%), Positives = 72/140 (51%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V E+ L+ + ++++ S + QQE+ IMK+FR+G LI
Sbjct: 261 TQAVIFCNTRRKVEELTTKLRN-DKFTVSAIY----SDLPQQERDTIMKEFRSGSSRILI 315
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQ---G--REA 234
+T + G+D+ ++ LVI +D + + R+GR GR R G + +T G RE
Sbjct: 316 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 375
Query: 235 HNF-QTSMQTCKSYVEKIIN 253
F T ++ S + ++N
Sbjct: 376 EKFYSTQIEELPSDIATLLN 395
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 42/140 (30%), Positives = 72/140 (51%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V E+ L+ + ++++ S + QQE+ IMK+FR+G LI
Sbjct: 261 TQAVIFCNTRRKVEELTTKLRN-DKFTVSAIY----SDLPQQERDTIMKEFRSGSSRILI 315
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQ---G--REA 234
+T + G+D+ ++ LVI +D + + R+GR GR R G + +T G RE
Sbjct: 316 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMREL 375
Query: 235 HNF-QTSMQTCKSYVEKIIN 253
F T ++ S + ++N
Sbjct: 376 EKFYSTQIEELPSDIATLLN 395
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 47/146 (32%), Positives = 67/146 (45%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
TK IIF + V EI + +A G S QQE+ ++ FR G + L+
Sbjct: 405 TKTIIFVETKKRVDEITRNIS--RQGWRACAIHGDKS---QQERDFVLSSFRNGRHSILV 459
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLTQGREAHNFQT 239
AT V GLD+ ++ VI +D + V R+GRTGR N G L T A+
Sbjct: 460 ATDVAARGLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSN-ANKAND 518
Query: 240 SMQTCKSYVEKIINNKSIYANLAKNG 265
+Q + + IN K + N+A NG
Sbjct: 519 LIQVLRE-ANQTINPKLM--NMAMNG 541
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 144 (55.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 47/140 (33%), Positives = 73/140 (52%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASM-FVGQSS 157
KF++L EIL H++ EKG VIIF + + E D L L+ ++KAS +
Sbjct: 590 KFLKLLEIL-GHYQ---EKGS---VIIFVDKQ----EHADGL--LKDLMKASYPCMSLHG 636
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
G+ Q ++ I+ F+ G L+ATSV GLD+ ++ LV+ + V R GRTG
Sbjct: 637 GIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGRTG 696
Query: 218 RKRN-GRCVILLTQGREAHN 236
R N G +T+G+ ++
Sbjct: 697 RAGNKGYAYTFITEGQARYS 716
>MGI|MGI:2182303 [details] [associations]
symbol:Ddx50 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 50"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 MGI:MGI:2182303 GO:GO:0005886 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:AF334104 IPI:IPI00117771 RefSeq:NP_444413.1
UniGene:Mm.114116 ProteinModelPortal:Q99MJ9 SMR:Q99MJ9
PhosphoSite:Q99MJ9 PaxDb:Q99MJ9 PRIDE:Q99MJ9
Ensembl:ENSMUST00000020270 GeneID:94213 KEGG:mmu:94213
UCSC:uc007fhp.1 InParanoid:Q99MJ9 NextBio:352175 Bgee:Q99MJ9
CleanEx:MM_DDX50 Genevestigator:Q99MJ9
GermOnline:ENSMUSG00000020076 Uniprot:Q99MJ9
Length = 734
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 45/123 (36%), Positives = 58/123 (47%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKF 171
L G + IIF + V E+ + P +K + G Q Q+EI +K F
Sbjct: 379 LQVYSGSEGRAIIFCETKKNVTEM-----AMNPHIKQNAQC--LHGDIAQSQREITLKGF 431
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
R G F L+AT+V GLDI E+DLVI + + R GRTGR R G CV Q
Sbjct: 432 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFY-Q 490
Query: 231 GRE 233
RE
Sbjct: 491 PRE 493
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 145 (56.1 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 40/120 (33%), Positives = 66/120 (55%)
Query: 119 ETTKVIIFANYRVVVAEIFD-VLKPLEPMV---KASMFVGQSSGV---TQQEQKEIMKKF 171
E + IIF + RV+ A + + +L + P K G +SG+ T+++Q EI++ F
Sbjct: 386 ENIRCIIFVD-RVITAIVLESLLAEILPNCNNWKTKYVAGNNSGLQNQTRKKQNEIVEDF 444
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQG 231
R G N ++ATS+ EEGLD+ +LVI FD + +Q GR R +N ++++ G
Sbjct: 445 RRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNICSFIQSRGRA-RMQNSDYLMMVESG 503
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 141 (54.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 37/99 (37%), Positives = 54/99 (54%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IF + V +I++ L L V+A G S Q E++ +K FR G+ + L+AT
Sbjct: 477 VLIFCENKKDVDDIYEYL--LLKQVEAVSIHGDKS---QDERESAIKAFREGKKDVLVAT 531
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD EI VI FD + + R+GRTGR+ N
Sbjct: 532 DVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGN 570
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 44/123 (35%), Positives = 58/123 (47%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKF 171
L G + IIF + V E+ + P +K + G Q Q+EI +K F
Sbjct: 384 LQVYSGSEGRAIIFCETKKNVTEM-----AMNPHIKQNAQC--LHGDIAQSQREITLKGF 436
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
R G F L+AT+V GLDI E+DLVI + + R GRTGR R G C+ Q
Sbjct: 437 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY-Q 495
Query: 231 GRE 233
RE
Sbjct: 496 PRE 498
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 37/132 (28%), Positives = 67/132 (50%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
K I +R +L + F+ A ++F + ++ +L ++ +K +SG
Sbjct: 360 KKIAIRNLLRTSFKPPA--------LVFVQSKDRAVQLVKLLSAIDSNLKVDSI---NSG 408
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
+ +E+ E M++FR GE L+ T + GLD+ ++ LVI +D S + + R+GRTGR
Sbjct: 409 KSDKERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGR 468
Query: 219 K-RNGRCVILLT 229
++G V T
Sbjct: 469 AGKSGHAVTYFT 480
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 43/145 (29%), Positives = 71/145 (48%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE-IMKKFRAGEFNTLIA 181
+IIF NY+ + + + E +K ++ G S QEQ+E ++ FR + +IA
Sbjct: 439 IIIFINYKQTADWLAEKFQK-ETNMKVTILHGSKS----QEQREHSLQLFRTNKVQIMIA 493
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLTQGREAHNFQTS 240
T+V GLDI + LV+ F K + R+GRTGR N G V ++ + ++
Sbjct: 494 TNVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAED----ESL 549
Query: 241 MQTCKSYVEKIIN-NKSIYANLAKN 264
++ YV K N +I++ KN
Sbjct: 550 IRELYKYVRKHDPLNSNIFSEAVKN 574
>UNIPROTKB|F1MMK3 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 CTD:79009 KO:K13183
OMA:GDTEEGC EMBL:DAAA02061828 IPI:IPI00689334 RefSeq:NP_001192982.1
UniGene:Bt.55841 PRIDE:F1MMK3 Ensembl:ENSBTAT00000022002
GeneID:534331 KEGG:bta:534331 NextBio:20876363 ArrayExpress:F1MMK3
Uniprot:F1MMK3
Length = 737
Score = 141 (54.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/123 (35%), Positives = 58/123 (47%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKF 171
L G + IIF + V E+ + P +K + G Q Q+EI +K F
Sbjct: 382 LQVYSGSEGRAIIFCETKKNVTEM-----AMNPHIKQNAQC--LHGDIAQSQREITLKGF 434
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
R G F L+AT+V GLDI E+DLVI + + R GRTGR R G C+ Q
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY-Q 493
Query: 231 GRE 233
RE
Sbjct: 494 PRE 496
>UNIPROTKB|Q9BQ39 [details] [associations]
symbol:DDX50 "ATP-dependent RNA helicase DDX50"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
EMBL:CH471083 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AL359844 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:AF334103 EMBL:BC000210
EMBL:BC000272 EMBL:BC018637 IPI:IPI00031554 RefSeq:NP_076950.1
UniGene:Hs.522984 PDB:2E29 PDBsum:2E29 ProteinModelPortal:Q9BQ39
SMR:Q9BQ39 IntAct:Q9BQ39 STRING:Q9BQ39 PhosphoSite:Q9BQ39
DMDM:55976580 SWISS-2DPAGE:Q9BQ39 PaxDb:Q9BQ39 PeptideAtlas:Q9BQ39
PRIDE:Q9BQ39 DNASU:79009 Ensembl:ENST00000373585 GeneID:79009
KEGG:hsa:79009 UCSC:uc001jou.3 CTD:79009 GeneCards:GC10P070661
HGNC:HGNC:17906 HPA:HPA037388 MIM:610373 neXtProt:NX_Q9BQ39
PharmGKB:PA134948525 InParanoid:Q9BQ39 KO:K13183 OMA:GDTEEGC
PhylomeDB:Q9BQ39 ChiTaRS:DDX50 EvolutionaryTrace:Q9BQ39
GenomeRNAi:79009 NextBio:67657 ArrayExpress:Q9BQ39 Bgee:Q9BQ39
CleanEx:HS_DDX50 Genevestigator:Q9BQ39 Uniprot:Q9BQ39
Length = 737
Score = 141 (54.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/123 (35%), Positives = 58/123 (47%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKF 171
L G + IIF + V E+ + P +K + G Q Q+EI +K F
Sbjct: 382 LQVYSGSEGRAIIFCETKKNVTEM-----AMNPHIKQNAQC--LHGDIAQSQREITLKGF 434
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
R G F L+AT+V GLDI E+DLVI + + R GRTGR R G C+ Q
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY-Q 493
Query: 231 GRE 233
RE
Sbjct: 494 PRE 496
>UNIPROTKB|F1SUG8 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005886 "plasma membrane" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00680000100003 OMA:GDTEEGC
EMBL:CU468175 Ensembl:ENSSSCT00000011216 Uniprot:F1SUG8
Length = 737
Score = 141 (54.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/123 (35%), Positives = 58/123 (47%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKF 171
L G + IIF + V E+ + P +K + G Q Q+EI +K F
Sbjct: 382 LQVYSGSEGRAIIFCETKKNVTEM-----AMNPHIKQNAQC--LHGDIAQSQREITLKGF 434
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
R G F L+AT+V GLDI E+DLVI + + R GRTGR R G C+ Q
Sbjct: 435 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY-Q 493
Query: 231 GRE 233
RE
Sbjct: 494 PRE 496
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 141 (54.7 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/123 (35%), Positives = 58/123 (47%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKF 171
L G + IIF + V E+ + P +K + G Q Q+EI +K F
Sbjct: 383 LQVYSGSEGRAIIFCETKKNVTEM-----AMNPHIKQNAQC--LHGDIAQSQREITLKGF 435
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQ 230
R G F L+AT+V GLDI E+DLVI + + R GRTGR R G C+ Q
Sbjct: 436 REGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY-Q 494
Query: 231 GRE 233
RE
Sbjct: 495 PRE 497
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 147 (56.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
++L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YVMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 44 (20.5 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 103 LREILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160
L I + + +H+++ ++T + I ++ R V+ VL P A M V +
Sbjct: 278 LNFINDCNIAVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKYI 333
Query: 161 QQEQKEIMKKF 171
+ EQ+E+ +KF
Sbjct: 334 KHEQEELHRKF 344
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/70 (47%), Positives = 42/70 (60%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G+F L+AT+V GLDI E+DLVI K + R GRT
Sbjct: 471 GDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRT 530
Query: 217 GRK-RNGRCV 225
GR R G C+
Sbjct: 531 GRAGRTGICI 540
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/70 (47%), Positives = 42/70 (60%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G+F L+AT+V GLDI E+DLVI K + R GRT
Sbjct: 471 GDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRT 530
Query: 217 GRK-RNGRCV 225
GR R G C+
Sbjct: 531 GRAGRTGICI 540
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 147 VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSP 206
+ A +F G + Q + ++ F+ GE + LIAT + G+DI ++ +VI FD +SP
Sbjct: 278 ISAEVFHGDKA---QGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSP 334
Query: 207 IKMVQRLGRTGRKRNGRCVILLTQGREAHNF 237
+ R+GR+GR + L E H+F
Sbjct: 335 ADYMHRIGRSGRAGEAGLAVTLISHEEYHHF 365
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 147 VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSP 206
+ A +F G + Q + ++ F+ GE + LIAT + G+DI ++ +VI FD +SP
Sbjct: 278 ISAEVFHGDKA---QGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSP 334
Query: 207 IKMVQRLGRTGRKRNGRCVILLTQGREAHNF 237
+ R+GR+GR + L E H+F
Sbjct: 335 ADYMHRIGRSGRAGEAGLAVTLISHEEYHHF 365
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 148 (57.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
I+L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YIMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 44 (20.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 103 LREILES-HF------RLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFV 153
LRE+ E+ HF +H+++ ++T + I ++ R V+ VL P A M V
Sbjct: 271 LRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMV 326
Query: 154 GQSSGVTQQEQKEIMKKF 171
+ + EQ+E+ +KF
Sbjct: 327 RELQKYIKHEQEELHRKF 344
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 148 (57.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
I+L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YIMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 44 (20.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 103 LREILES-HF------RLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFV 153
LRE+ E+ HF +H+++ ++T + I ++ R V+ VL P A M V
Sbjct: 271 LRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMV 326
Query: 154 GQSSGVTQQEQKEIMKKF 171
+ + EQ+E+ +KF
Sbjct: 327 RELQKYIKHEQEELHRKF 344
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 148 (57.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
I+L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YIMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 44 (20.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 103 LREILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160
L I + + +H+++ ++T + I ++ R V+ VL P A M V +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKYI 333
Query: 161 QQEQKEIMKKF 171
+ EQ+E+ +KF
Sbjct: 334 KHEQEELHRKF 344
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 148 (57.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
I+L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YIMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 44 (20.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 103 LREILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160
L I + + +H+++ ++T + I ++ R V+ VL P A M V +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKYI 333
Query: 161 QQEQKEIMKKF 171
+ EQ+E+ +KF
Sbjct: 334 KHEQEELHRKF 344
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 148 (57.2 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
I+L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YIMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 44 (20.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 103 LREILES-HF------RLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFV 153
LRE+ E+ HF +H+++ ++T + I ++ R V+ VL P A M V
Sbjct: 271 LRELDEALHFLNDCNISVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMV 326
Query: 154 GQSSGVTQQEQKEIMKKF 171
+ + EQ+E+ +KF
Sbjct: 327 RELQKYIKHEQEELHRKF 344
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 138 (53.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 116 EKGETTKVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFRAG 174
+K E + I+F N V + +L L+ P V F+ Q S + +K F++G
Sbjct: 241 KKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAA------LKTFKSG 294
Query: 175 EFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
+ L+AT V GLDI ++ +VI + S + R+GRT R R+GR + +T
Sbjct: 295 KVKVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFGRSGRAISFIT 350
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR +L RE+ + +T K ++++
Sbjct: 329 GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM 366
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR +L RE+ + +T K ++++
Sbjct: 329 GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM 366
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR +L RE+ + +T K ++++
Sbjct: 329 GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM 366
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR +L RE+ + +T K ++++
Sbjct: 329 GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM 366
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR +L RE+ + +T K ++++
Sbjct: 329 GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM 366
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR +L RE+ + +T K ++++
Sbjct: 329 GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM 366
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 136 (52.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/99 (33%), Positives = 59/99 (59%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS-SGVTQQEQKEIMKKFRAGEFNTL 179
T+ ++F N ++ V D L + M++++ V + +G++Q E+ +IM KFR +F L
Sbjct: 257 TQAVVFCNTQMKV----DWLT--KKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVL 310
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T + GLD+ E+ LV+ +D S + R+GR+GR
Sbjct: 311 ISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGR 349
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 136 (52.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 33/99 (33%), Positives = 59/99 (59%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS-SGVTQQEQKEIMKKFRAGEFNTL 179
T+ ++F N ++ V D L + M++++ V + +G++Q E+ +IM KFR +F L
Sbjct: 257 TQAVVFCNTQMKV----DWLT--KKMLESNFTVCKMHAGMSQSERDDIMLKFRQCKFRVL 310
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T + GLD+ E+ LV+ +D S + R+GR+GR
Sbjct: 311 ISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGR 349
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 138 (53.6 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 30/98 (30%), Positives = 49/98 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR +L RE+ + +T K ++++
Sbjct: 329 GRTGRAGKKGIAMLFVTPRESGQLKNIERTTKRKMDRM 366
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 136 (52.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 35/111 (31%), Positives = 55/111 (49%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N ++ V + D +K V V + Q E+ IM FR G LI
Sbjct: 266 TQAVIFCNTKLKVNWLADQMKKQNFTV-----VAMHGDMKQDERDSIMNDFRRGNSRVLI 320
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQ 230
+T V G+D+ ++ LVI +D + R+GR+GR R G + L+T+
Sbjct: 321 STDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITK 371
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 136 (52.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 39/129 (30%), Positives = 66/129 (51%)
Query: 117 KGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ-SSGVTQQEQKEIMKKFRAGE 175
K + KV+IF + A+I ++K LE KAS+ SG TQ ++E ++ F+
Sbjct: 242 KADYEKVLIFCKTKYG-ADI--IVKALE---KASITAASLHSGKTQAVREEALQNFKDST 295
Query: 176 FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQG--R 232
L+AT V G+D+ I LVI ++ + P + R+GRT R ++G + + R
Sbjct: 296 LRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIR 355
Query: 233 EAHNFQTSM 241
+ N + S+
Sbjct: 356 QLTNIENSI 364
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G+F L+AT+V GLDI E+DLV+ K + R GRT
Sbjct: 470 GDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRT 529
Query: 217 GRK-RNGRCV 225
GR R G C+
Sbjct: 530 GRAGRTGVCI 539
>WB|WBGene00001599 [details] [associations]
symbol:glh-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 141 (54.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179
T K I+F + R + + +L + V A G Q+E+ E +++FR G L
Sbjct: 817 TKKTIVFVSQRAMADTLASILSSAQ--VPAITIHGARE---QRERSEALRQFRNGSKPVL 871
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLTQ 230
IAT+V E GLDI +D VI +D + + R+GRTGR N GR +++
Sbjct: 872 IATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISE 923
>UNIPROTKB|Q966L9 [details] [associations]
symbol:glh-2 "ATP-dependent RNA helicase glh-2"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:FO080958 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:U60194 EMBL:U60449 RefSeq:NP_491876.1
ProteinModelPortal:Q966L9 SMR:Q966L9 IntAct:Q966L9 STRING:Q966L9
PaxDb:Q966L9 EnsemblMetazoa:C55B7.1 GeneID:172361
KEGG:cel:CELE_C55B7.1 UCSC:C55B7.1.2 CTD:172361 WormBase:C55B7.1
HOGENOM:HOG000112735 InParanoid:Q966L9 OMA:PREGRNG NextBio:875199
Uniprot:Q966L9
Length = 974
Score = 141 (54.7 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 120 TTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTL 179
T K I+F + R + + +L + V A G Q+E+ E +++FR G L
Sbjct: 817 TKKTIVFVSQRAMADTLASILSSAQ--VPAITIHGARE---QRERSEALRQFRNGSKPVL 871
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLTQ 230
IAT+V E GLDI +D VI +D + + R+GRTGR N GR +++
Sbjct: 872 IATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTGRVGNAGRATSFISE 923
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 136 (52.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 273 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 326
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 327 ISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGR 365
>UNIPROTKB|Q5E9G8 [details] [associations]
symbol:LGP2 "Putative uncharacterized protein LGP2"
species:9913 "Bos taurus" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0045824 "negative
regulation of innate immune response" evidence=IEA] [GO:0039536
"negative regulation of RIG-I signaling pathway" evidence=IEA]
[GO:0039534 "negative regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:0032481 "positive regulation of type I interferon
production" evidence=IEA] [GO:0032480 "negative regulation of type
I interferon production" evidence=IEA] [GO:0009615 "response to
virus" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 CTD:79132 HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW
GO:GO:0032481 EMBL:DAAA02049179 EMBL:DAAA02049177 EMBL:DAAA02049178
EMBL:BT020952 IPI:IPI00693785 RefSeq:NP_001015545.1
UniGene:Bt.27564 Ensembl:ENSBTAT00000065738 GeneID:508378
KEGG:bta:508378 NextBio:20868490 Uniprot:Q5E9G8
Length = 680
Score = 139 (54.0 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/57 (47%), Positives = 41/57 (71%)
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGR 215
+TQ++Q+E+++KFR G N L+ATSV EEGLDI + ++V+ + + I MVQ GR
Sbjct: 418 MTQRDQQEVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGR 474
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 149 (57.5 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATSV EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
++L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YVMLADTDKIQSFEEDLKTYKA-IEKILRNK 589
Score = 42 (19.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 106 ILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQE 163
I + + +H+++ ++T + I ++ R V+ VL P A M V + + E
Sbjct: 281 INDCNVSVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKYIKHE 336
Query: 164 QKEIMKKF 171
Q+E+ +KF
Sbjct: 337 QEELHRKF 344
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 136 (52.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 147 VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSP 206
+ A++F G Q E+ ++ F+AG+ LIAT + GLDI ++ +VI F+ +SP
Sbjct: 280 ITAAVFHGDKG---QSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSP 336
Query: 207 IKMVQRLGRTGRKRNGRCVILLTQGREAHNF 237
+ R+GR+GR I L + H+F
Sbjct: 337 SDYMHRIGRSGRAGEVGLAISLIDHEDYHHF 367
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 137 (53.3 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 41/123 (33%), Positives = 60/123 (48%)
Query: 110 HFRLHAEKGETTKVIIFANYRVVVAEIFD-VLKPLEPMVKASMFVGQSSGVTQQEQKEIM 168
H L E T I+F N A++ + +L+ L V S+ S + Q E+ +
Sbjct: 340 HVLLSTESNITKSAIVFTN-TTKSADLLERLLRSLGHRV-TSLH----SLLPQSERNSNL 393
Query: 169 KKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVIL 227
+FRA L+AT V GLDI + LV+ F+ ++P V R+GRT R R G V L
Sbjct: 394 ARFRASAARVLVATDVASRGLDIPSVSLVVNFEVPRNPDDYVHRVGRTARAGRTGEAVTL 453
Query: 228 LTQ 230
+ Q
Sbjct: 454 VGQ 456
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 139 (54.0 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 99 KFIRLREI-LESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSS 157
K + L I ++S+ + + T K ++F + R + + +L + V A G
Sbjct: 584 KLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQ--VPAITIHGARE 641
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
Q+E+ E +++FR G LIAT+V E GLDI +D VI +D + + R+GRTG
Sbjct: 642 ---QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTG 698
Query: 218 RKRN-GRCVILLTQ 230
R N GR +++
Sbjct: 699 RVGNSGRATSFISE 712
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 139 (54.0 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 41/134 (30%), Positives = 68/134 (50%)
Query: 99 KFIRLREI-LESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSS 157
K + L I ++S+ + + T K ++F + R + + +L + V A G
Sbjct: 584 KLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQ--VPAITIHGARE 641
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
Q+E+ E +++FR G LIAT+V E GLDI +D VI +D + + R+GRTG
Sbjct: 642 ---QRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRIGRTG 698
Query: 218 RKRN-GRCVILLTQ 230
R N GR +++
Sbjct: 699 RVGNSGRATSFISE 712
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 139 (54.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 33/70 (47%), Positives = 41/70 (58%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G F L+AT+V GLDI E+DLVI K + R GRT
Sbjct: 469 GDIPQKQREITLKGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRT 528
Query: 217 GRK-RNGRCV 225
GR R G C+
Sbjct: 529 GRAGRTGVCI 538
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 148 (57.2 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATSV EEG+DI + +LV+ FD VQ GR +
Sbjct: 489 RKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 548
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
++L + +F+ ++T K+ +EKI+ NK
Sbjct: 549 N--YVMLADTDKIKSFEEDLKTYKA-IEKILRNK 579
Score = 42 (19.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 106 ILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQE 163
I + + +H+++ ++T + I ++ R V+ VL P A M V + + E
Sbjct: 271 INDCNVSVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKYIKHE 326
Query: 164 QKEIMKKF 171
Q+E+ +KF
Sbjct: 327 QEELHRKF 334
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 138 (53.6 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 33/78 (42%), Positives = 43/78 (55%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G F L+AT+V GLDI E+DLV+ K + R GRT
Sbjct: 396 GDIPQKQREITLKGFRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRT 455
Query: 217 GRK-RNGRCVILLTQGRE 233
GR R G C+ + E
Sbjct: 456 GRAGRTGICICFYQRKEE 473
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 148 (57.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 36/94 (38%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATSV EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
++L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YVMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 42 (19.8 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 106 ILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQE 163
I + + +H+++ ++T + I ++ R V+ VL P A M V + + E
Sbjct: 281 INDCNVAVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKYIKHE 336
Query: 164 QKEIMKKF 171
Q+E+ +KF
Sbjct: 337 QEELHRKF 344
>WB|WBGene00001090 [details] [associations]
symbol:drh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016246
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 HSSP:P10081
EMBL:AF480439 EMBL:FO080250 PIR:T32534 RefSeq:NP_501018.1
UniGene:Cel.32668 ProteinModelPortal:G5EDI8 SMR:G5EDI8
IntAct:G5EDI8 EnsemblMetazoa:F15B10.2 GeneID:177425
KEGG:cel:CELE_F15B10.2 CTD:177425 WormBase:F15B10.2 OMA:YRMINIR
NextBio:896758 Uniprot:G5EDI8
Length = 1037
Score = 140 (54.3 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 31/68 (45%), Positives = 43/68 (63%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
++Q+Q E +K F GE L++TSV EEGLD+ E LVI ++ + I VQR GR GR
Sbjct: 751 SKQKQMEKLKMFADGEIRILVSTSVAEEGLDVPECSLVIKYNYATNEIAHVQRRGR-GRA 809
Query: 220 RNGRCVIL 227
N CV++
Sbjct: 810 LNSECVLI 817
>POMBASE|SPCC285.03 [details] [associations]
symbol:SPCC285.03 "ATP-dependent RNA helicase Dbp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC285.03 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 EMBL:D89259 PIR:T41249 PIR:T43184
RefSeq:NP_588332.1 ProteinModelPortal:Q76PD3
EnsemblFungi:SPCC285.03.1 GeneID:2538809 KEGG:spo:SPCC285.03
HOGENOM:HOG000203294 OMA:HIDQTPG OrthoDB:EOG490BK3 NextBio:20799991
Uniprot:Q76PD3
Length = 604
Score = 137 (53.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 36/142 (25%), Positives = 65/142 (45%)
Query: 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ- 155
H+ + IL H +H++ T ++ F A + +L+ + + S G
Sbjct: 411 HVSVSSEKPILLYHL-IHSKN--LTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLF 467
Query: 156 SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGR 215
+S +++ E+K+I+ +F G+ N L+ + + G+D+ VI +D S V R+GR
Sbjct: 468 TSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGR 527
Query: 216 TGRKRNGRCVILLTQGREAHNF 237
T R L Q E H+F
Sbjct: 528 TARAGREGFAWTLVQSHEGHHF 549
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 138 (53.6 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 47/133 (35%), Positives = 67/133 (50%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
KF RL+++L+ E GE T I+F N + + K L+ KA V G
Sbjct: 563 KFFRLQKLLD-------ELGEKT-AIVFVNTK---KNCDSIAKNLD---KAGYRVTTLHG 608
Query: 159 VTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
QEQ+EI ++ FRA +N L+AT V G+DI ++ VI +D K R+GRTG
Sbjct: 609 GKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTG 668
Query: 218 RK-RNGRCVILLT 229
R ++G LT
Sbjct: 669 RAGKSGVATSFLT 681
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 137 (53.3 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 45/150 (30%), Positives = 70/150 (46%)
Query: 86 INIMSS-EYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLE 144
+N++ E+ S K +R+ E L+ + KV+IFA +V V I++ L
Sbjct: 415 LNVLQELEFVRSENKLVRVLECLQK---------TSPKVLIFAEKKVDVDNIYEYL---- 461
Query: 145 PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK 204
+VK G Q ++ ++ FR E + L+AT V +GLD I+ VI FD +
Sbjct: 462 -LVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPE 520
Query: 205 SPIKMVQRLGRTGRK-RNGRCVILLTQGRE 233
V R+GRTGR R G + + E
Sbjct: 521 DIENYVHRIGRTGRSGRKGLATTFINKKSE 550
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 140 (54.3 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 45/134 (33%), Positives = 69/134 (51%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASM-FVGQSS 157
+F+RL E+L +EKG K+++F + E D L M+K+S +
Sbjct: 762 RFLRLLELLGEW----SEKG---KILVFVQSQ----EKCDAL--YRDMIKSSYPCLSLHG 808
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
G Q +++ + F+ N LIATSV GLD+ E++LV+ FDA V R+GRTG
Sbjct: 809 GKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTG 868
Query: 218 RK-RNGRCVILLTQ 230
R R G V +++
Sbjct: 869 RAGRKGCAVTFISE 882
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 274 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 327
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 328 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 366
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 134 (52.2 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V ++ E M A+ V G + Q+E++EI+K FR+GE L
Sbjct: 272 TQAVIFCNTKKKVDQL------TEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVL 325
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I T + G+D+ ++ LVI +D + R+GR+GR
Sbjct: 326 ITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGR 364
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 278 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 370
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 278 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 370
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 278 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 370
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 278 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 370
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 278 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 370
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 278 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 331
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 332 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 370
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 279 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 332
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 333 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 371
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 134 (52.2 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/99 (35%), Positives = 56/99 (56%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M +A+ V G + Q+E++ IMK+FR+G L
Sbjct: 281 TQAVIFCNTKRKV----DWLT--EKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVL 334
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 335 ISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 373
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 147 (56.8 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
++L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YVMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 42 (19.8 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 103 LREILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160
L I + + +H+++ ++T + I ++ R V+ VL P A M V +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKHI 333
Query: 161 QQEQKEIMKKF 171
+ EQ+E+ +KF
Sbjct: 334 KHEQEELHRKF 344
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 147 (56.8 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 35/94 (37%), Positives = 57/94 (60%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPIS 558
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
++L + +F+ ++T K+ +EKI+ NK
Sbjct: 559 N--YVMLADTDKIKSFEEDLKTYKA-IEKILRNK 589
Score = 42 (19.8 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 103 LREILESHFRLHAEKGETTKVI--IFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160
L I + + +H+++ ++T + I ++ R V+ VL P A M V +
Sbjct: 278 LNFINDCNISVHSKERDSTLISKQILSDCRAVLV----VLGPWCADKVAGMMVRELQKHI 333
Query: 161 QQEQKEIMKKF 171
+ EQ+E+ +KF
Sbjct: 334 KHEQEELHRKF 344
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 136 (52.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
KF +L +I+ SH+R+ E +IIFAN++ V + L + + + G S
Sbjct: 424 KFNKLIKIIRSHWRVT----ENPLIIIFANFKHVCDSLSQELSSND--INNVVIHGSKS- 476
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
Q +++ + FR E LIAT V G+DI + LVI + K + + R+GRTGR
Sbjct: 477 --QDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGR 534
Query: 219 KRN 221
N
Sbjct: 535 AGN 537
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 136 (52.9 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
KF +L +I+ SH+R+ E +IIFAN++ V + L + + + G S
Sbjct: 424 KFNKLIKIIRSHWRVT----ENPLIIIFANFKHVCDSLSQELSSND--INNVVIHGSKS- 476
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
Q +++ + FR E LIAT V G+DI + LVI + K + + R+GRTGR
Sbjct: 477 --QDMREQAITNFRNHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGR 534
Query: 219 KRN 221
N
Sbjct: 535 AGN 537
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 148 (57.2 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 162 QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
++Q+E+++KFRA E N LIATS+ EEG+DI + +LV+ FD VQ GR +
Sbjct: 490 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPIS 549
Query: 222 GRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
I+L + F+ ++T K+ +EKI+ NK
Sbjct: 550 N--YIMLADSDKIKAFEEDLKTYKA-IEKILRNK 580
Score = 40 (19.1 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 103 LREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVK---ASMFVGQSSGV 159
L +++ + H+++ ++T + + ++++ VL L P A M V +
Sbjct: 268 LNFLIDCNISTHSKERDSTLIS-----KQILSDCQTVLLVLGPWCADKVAGMMVRELQKY 322
Query: 160 TQQEQKEIMKKF 171
+ EQ+E+ +KF
Sbjct: 323 IKHEQEELHRKF 334
>ZFIN|ZDB-GENE-120612-3 [details] [associations]
symbol:dhx58 "DEXH (Asp-Glu-X-His) box polypeptide
58" species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-120612-3 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:79132 KO:K12649 EMBL:JF970230 RefSeq:NP_001244086.1
UniGene:Dr.93597 GeneID:100148871 KEGG:dre:100148871 Uniprot:G3GMG3
Length = 679
Score = 136 (52.9 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 34/90 (37%), Positives = 47/90 (52%)
Query: 147 VKASMFVGQSSG---VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQ 203
+ A + G +G +TQ EQK ++ FR G N LI+TSV EEGLDI E +LV+ +
Sbjct: 400 ITAGILTGAGNGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEGLDIPECNLVVRYGLL 459
Query: 204 KSPIKMVQRLGRTGRKRNGRCVILLTQGRE 233
+ I Q GR + V+ GRE
Sbjct: 460 TNEIAQQQASGRARASNSVYSVVADVGGRE 489
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 134 (52.2 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 41/141 (29%), Positives = 66/141 (46%)
Query: 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS 156
H K RL +IL H ++G KV+ F Y+ + +L+ K G
Sbjct: 305 HEKEQRLVQILNRH-----QRGTPDKVLAFCLYKKEAMRVERLLR-----TKGFKVAGIH 354
Query: 157 SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
++QQE+ ++ F++G L+AT V GLDI + LV+ + V R+GRT
Sbjct: 355 GDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRT 414
Query: 217 GRK-RNGRCVILLTQGREAHN 236
GR +G + L T+ +A +
Sbjct: 415 GRAGADGHAITLFTETDKAQS 435
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 38/140 (27%), Positives = 71/140 (50%)
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178
+ + I+F R +A++ L+ + + + G+ + Q + + +FR G+ N
Sbjct: 245 QAERSIVFLKTRERLADLRAELEKAQ--IPCAWIQGE---MPQDRRNNAISRFREGDVNI 299
Query: 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNF 237
L+AT V G+D+ +I VI FD +S + R+GRTGR + G + L+ EAH+
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV----EAHD- 354
Query: 238 QTSMQTCKSYVEKIINNKSI 257
Q M + Y+++ + + I
Sbjct: 355 QPMMARVERYIKEEVKERFI 374
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 133 (51.9 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 38/140 (27%), Positives = 71/140 (50%)
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178
+ + I+F R +A++ L+ + + + G+ + Q + + +FR G+ N
Sbjct: 245 QAERSIVFLKTRERLADLRAELEKAQ--IPCAWIQGE---MPQDRRNNAISRFREGDVNI 299
Query: 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNF 237
L+AT V G+D+ +I VI FD +S + R+GRTGR + G + L+ EAH+
Sbjct: 300 LLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLV----EAHD- 354
Query: 238 QTSMQTCKSYVEKIINNKSI 257
Q M + Y+++ + + I
Sbjct: 355 QPMMARVERYIKEEVKERFI 374
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 137 (53.3 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 34/80 (42%), Positives = 45/80 (56%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G F L+AT+V GLDI E+DLV+ K + R GRT
Sbjct: 541 GDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRT 600
Query: 217 GRK-RNGRCVILLTQGREAH 235
GR R G C+ Q +E +
Sbjct: 601 GRAGRTGVCICFY-QNKEEY 619
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 137 (53.3 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 32/70 (45%), Positives = 42/70 (60%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G+F L+AT+V GLDI E+DLV+ K + R GRT
Sbjct: 541 GDIPQKQREITLKGFRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRT 600
Query: 217 GRK-RNGRCV 225
GR R G C+
Sbjct: 601 GRAGRTGICI 610
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 134 (52.2 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 42/133 (31%), Positives = 67/133 (50%)
Query: 104 REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQE 163
R++LE + H+ + KV+IFA Y+ A + LK V A ++QQ+
Sbjct: 343 RKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAI-----HGDLSQQQ 397
Query: 164 QKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNG 222
+ + + +F++G+ N L+AT V GLDI + VI + V R+GRTGR + G
Sbjct: 398 RTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTG 457
Query: 223 RCVILLTQGREAH 235
L T+ +E H
Sbjct: 458 TAHTLFTE-QEKH 469
>ZFIN|ZDB-GENE-031113-10 [details] [associations]
symbol:ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
21" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 InterPro:IPR017956 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00384 SMART:SM00490
ZFIN:ZDB-GENE-031113-10 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 CTD:9188 HOVERGEN:HBG051331
OrthoDB:EOG46143T EMBL:BC160629 IPI:IPI00611974
RefSeq:NP_001120807.1 UniGene:Dr.104447 ProteinModelPortal:B1H1J4
STRING:B1H1J4 GeneID:799650 KEGG:dre:799650 NextBio:20933916
Uniprot:B1H1J4
Length = 759
Score = 136 (52.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 41/120 (34%), Positives = 57/120 (47%)
Query: 118 GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS-SGVTQQEQKEI-MKKFRAGE 175
G + I+F + E+ L +K S QS G Q+Q+E+ +K FR G
Sbjct: 416 GSHGRTIVFCETKKEATEL-----SLNTSIKQS---AQSLHGDIPQKQREVTLKGFRNGS 467
Query: 176 FNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREA 234
F L+AT+V GLDI E+DLVI + R GRTGR R G C+ + E+
Sbjct: 468 FEVLVATNVAARGLDIPEVDLVIQSSPPNDVESYIHRSGRTGRAGRTGICICFYQRKEES 527
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 136 (52.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 41/114 (35%), Positives = 60/114 (52%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V++FA+ + V EI + L A++ G Q + E ++KF++G + LIAT
Sbjct: 476 VLVFASKKATVDEI-EAQLTLNSFKVAALH-GDKD---QASRMETLQKFKSGVHHVLIAT 530
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK--RNGRCVILLTQGREA 234
V GLDI + V+ +D K V R+GRTGR R+G L+TQ REA
Sbjct: 531 DVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQ-REA 583
>UNIPROTKB|F5H5W6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
GO:GO:0005524 GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671
HGNC:HGNC:19102 ChiTaRS:DDX58 IPI:IPI01012440
ProteinModelPortal:F5H5W6 SMR:F5H5W6 Ensembl:ENST00000545044
UCSC:uc011lnr.1 ArrayExpress:F5H5W6 Bgee:F5H5W6 Uniprot:F5H5W6
Length = 536
Score = 134 (52.2 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 39/114 (34%), Positives = 64/114 (56%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK--PLEPMVKASMFVG-----QSSG 158
IL+ + L+ E T I+F R +V + + ++ P +K + G Q++G
Sbjct: 414 ILQEEYHLNPE----TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTG 469
Query: 159 VTQQEQKEIMKKFRA-GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQ 211
+T QK I+ F+A G+ N LIATSV +EG+DI + +LVI ++ + IKM+Q
Sbjct: 470 MTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQ 523
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 133 (51.9 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 33/108 (30%), Positives = 57/108 (52%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
+Q + + KF++G+ L+AT V GLDI +DLVI +D + P V R+GRT R
Sbjct: 337 SQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARA 396
Query: 220 -RNGRCVILLTQG--REAHNFQTSM-QTCKSYVEKIINNKSIYANLAK 263
R G V ++T+ + H + + + + Y +K+I + ++K
Sbjct: 397 GRGGLAVSIITETDVKLIHKIEEEVGKKMEPYNKKVITDSLEVTKVSK 444
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 133 (51.9 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ ++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 270 GIHGDLTQAKRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 214 GRTGRK-RNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR + G + +T RE + QT K ++++
Sbjct: 330 GRTGRAGKTGMAMTFITP-REKSMLRAIEQTTKRKMDRM 367
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 135 (52.6 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 32/70 (45%), Positives = 41/70 (58%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR G F L+AT+V GLDI E+DLV+ K + R GRT
Sbjct: 465 GDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRT 524
Query: 217 GRK-RNGRCV 225
GR R G C+
Sbjct: 525 GRAGRTGVCI 534
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
++Q +++ + FR G FN L+AT V GLD+ +DL+I ++ + V R GRTGR
Sbjct: 382 ISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGR 441
Query: 219 K-RNGRCVILLTQ 230
+ G +++ +Q
Sbjct: 442 AGKKGSAILIYSQ 454
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 53/190 (27%), Positives = 82/190 (43%)
Query: 92 EYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASM 151
EY H K L +IL +H G T +IF + + + + L + A+
Sbjct: 425 EYVEDHDKRSVLLDILHTH-------GTTGLTLIFVETKRMADALSEFL--INQRFPATA 475
Query: 152 FVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQ 211
G TQ+E++ ++ FR+G + L+AT+V GLDI + VI +D V
Sbjct: 476 IHGDR---TQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVH 532
Query: 212 RLGRTGRKRN-GRCVILLTQG-----REAHNF-QTSMQTCKSYVEKIINNKSIYANLAKN 264
R+GRTGR N G +G R+ + + + Q S++E I S Y
Sbjct: 533 RIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESIAREGSGYGGRGGR 592
Query: 265 GPRMIPAHVT 274
G R A+ T
Sbjct: 593 GGRGRGANAT 602
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 40/138 (28%), Positives = 68/138 (49%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
KF + +++++ + +A + K++IFA Y+ + I + LK V A
Sbjct: 379 KFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAI-----HGD 433
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
++QQ++ + F++G+ N L+AT V GLDI + +VI + V R+GRTGR
Sbjct: 434 LSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGR 493
Query: 219 K-RNGRCVILLTQGREAH 235
G L T+ E H
Sbjct: 494 AGAKGTAHTLFTED-EKH 510
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/96 (33%), Positives = 51/96 (53%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G +Q ++EI ++ FR+G+ L+ATSV GLDI + VI FD + V R+GRT
Sbjct: 451 GDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRT 510
Query: 217 GRKRN-GRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GR N G+ V + H Q+ ++ +++
Sbjct: 511 GRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEV 546
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 35/114 (30%), Positives = 58/114 (50%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V + D ++ + V A+ + Q + IM++FR+G LI
Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSAT-----HGDMDQNTRDIIMREFRSGSSRVLI 333
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQGRE 233
T + G+D+ ++ LVI FD P + R+GR+GR R G + +T+ E
Sbjct: 334 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 43/154 (27%), Positives = 77/154 (50%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
+F+R+ EI+ +F L A G+ K+IIF +V+ D L + +K G G
Sbjct: 320 RFLRVCEIV--NF-LTAAHGQNYKMIIFVKSKVMA----DHLSS-DFCMKGINSQGLHGG 371
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
+Q +++ + R+GE L+AT + G+D+ +I V+ +D + V R+GRTGR
Sbjct: 372 RSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGR 431
Query: 219 K-RNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
R G + L + NF+ +Q + +++
Sbjct: 432 AGRKGEAMSFLWWN-DRSNFEGLIQILEKSEQEV 464
>GENEDB_PFALCIPARUM|PFL0100c [details] [associations]
symbol:PFL0100c "ATP dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014188 GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 KO:K01509
RefSeq:XP_001350429.2 GeneID:811073 KEGG:pfa:PFL0100c
EuPathDB:PlasmoDB:PF3D7_1202000 HOGENOM:HOG000281143
ProtClustDB:CLSZ2433078 Uniprot:Q8I625
Length = 841
Score = 140 (54.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 47/157 (29%), Positives = 77/157 (49%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDV--LKPLEPMVKASMFVGQS 156
KF+ E + R +A+K K IIFAN + V +++++ LKP M+ + +
Sbjct: 487 KFVNNSEKEGNMKRSNADK--INKCIIFANTKEEVEKLYEISLLKPHAVMMHSEL----- 539
Query: 157 SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
+T Q+ + I F+ G+ N LI T + GLDI + ++ + SP + R GRT
Sbjct: 540 --LTIQKNENI-NLFKVGKKNVLITTDIISRGLDIDNVIFILNYSPPTSPNDYIHRSGRT 596
Query: 217 GR-KRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252
GR K G C+ + + E N M+ K+ E I+
Sbjct: 597 GRGKEKGICLTMYHK-YEYRNVDKIMKYTKNKFEVIL 632
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 343 DIRTCFE--NITKKKKTFIDFLTQSSGEPVSAMDDEVVIVQNKIKPMQRKR 391
+I T E I K+KK I ++ +++I+ K + +RKR
Sbjct: 779 EINTLIELPPIIKEKKNIIRRKKKAPWITYKLQKKKIIILGRKTEKYKRKR 829
>UNIPROTKB|Q8I625 [details] [associations]
symbol:PFL0100c "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 EMBL:AE014188 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
KO:K01509 RefSeq:XP_001350429.2 GeneID:811073 KEGG:pfa:PFL0100c
EuPathDB:PlasmoDB:PF3D7_1202000 HOGENOM:HOG000281143
ProtClustDB:CLSZ2433078 Uniprot:Q8I625
Length = 841
Score = 140 (54.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 47/157 (29%), Positives = 77/157 (49%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDV--LKPLEPMVKASMFVGQS 156
KF+ E + R +A+K K IIFAN + V +++++ LKP M+ + +
Sbjct: 487 KFVNNSEKEGNMKRSNADK--INKCIIFANTKEEVEKLYEISLLKPHAVMMHSEL----- 539
Query: 157 SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
+T Q+ + I F+ G+ N LI T + GLDI + ++ + SP + R GRT
Sbjct: 540 --LTIQKNENI-NLFKVGKKNVLITTDIISRGLDIDNVIFILNYSPPTSPNDYIHRSGRT 596
Query: 217 GR-KRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252
GR K G C+ + + E N M+ K+ E I+
Sbjct: 597 GRGKEKGICLTMYHK-YEYRNVDKIMKYTKNKFEVIL 632
Score = 37 (18.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 343 DIRTCFE--NITKKKKTFIDFLTQSSGEPVSAMDDEVVIVQNKIKPMQRKR 391
+I T E I K+KK I ++ +++I+ K + +RKR
Sbjct: 779 EINTLIELPPIIKEKKNIIRRKKKAPWITYKLQKKKIIILGRKTEKYKRKR 829
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/159 (30%), Positives = 78/159 (49%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPM-VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181
+I+F N + V A+I + K + M KA V G Q+ +++ + F+ EF+ L+A
Sbjct: 970 IIVFVNQKKV-ADI--ISKSITKMKYKA---VALHGGKAQEIREQTLSAFKNAEFDILVA 1023
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNFQTS 240
T V G+D+ + LVI FD K R+GRTGR G + +T+ ++H F
Sbjct: 1024 TDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITE-HDSHLFYD- 1081
Query: 241 MQTCKSYVEKIINNKSIYANLAKN-GPRMIPAHV--TPR 276
K ++ I +N + LA N ++ P V TP+
Sbjct: 1082 ---LKQFL--ISSNNIVPLELANNPASKVKPGTVMQTPK 1115
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 48/159 (30%), Positives = 78/159 (49%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPM-VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181
+I+F N + V A+I + K + M KA V G Q+ +++ + F+ EF+ L+A
Sbjct: 970 IIVFVNQKKV-ADI--ISKSITKMKYKA---VALHGGKAQEIREQTLSAFKNAEFDILVA 1023
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNFQTS 240
T V G+D+ + LVI FD K R+GRTGR G + +T+ ++H F
Sbjct: 1024 TDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITE-HDSHLFYD- 1081
Query: 241 MQTCKSYVEKIINNKSIYANLAKN-GPRMIPAHV--TPR 276
K ++ I +N + LA N ++ P V TP+
Sbjct: 1082 ---LKQFL--ISSNNIVPLELANNPASKVKPGTVMQTPK 1115
>UNIPROTKB|H0YJS3 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0006259 "DNA metabolic
process" evidence=IEA] InterPro:IPR006166 InterPro:IPR020819
SMART:SM00891 GO:GO:0003677 GO:GO:0006259 GO:GO:0090305
InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004518 InterPro:IPR010994
SUPFAM:SSF47781 HGNC:HGNC:23168 Gene3D:3.40.50.10130 EMBL:AL121809
Ensembl:ENST00000556250 Bgee:H0YJS3 Uniprot:H0YJS3
Length = 1564
Score = 124 (48.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 34/111 (30%), Positives = 63/111 (56%)
Query: 90 SSEYAWSHLKFIRLREILESHFRL-HAE-----KGETTKVIIFANYRVVVAEIFDVLKPL 143
+ ++ +SH K +L E++ HF+ +AE K + T+V+IF+++R V EI ++L
Sbjct: 25 NKKFVYSHPKLKKLEEVVIEHFKSWNAENTTEKKRDETRVMIFSSFRDSVQEIAEMLSQH 84
Query: 144 EPMVKASMFVGQSSG-----VTQQEQKEIMKKFRAGEFNTLIATSVGEEGL 189
+P+++ FVG +SG TQ+EQ EI + ++ + + A S + L
Sbjct: 85 QPIIRVMTFVGHASGKSTKGFTQKEQLEIYNQSQSNKRSIYKAISSNRQVL 135
Score = 60 (26.2 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 351 ITKKKKTFIDFLTQSSGEPVSAMDDEV--VIVQNKIKP 386
IT KK +FI + Q S V D+E ++ Q IKP
Sbjct: 326 ITHKKSSFIKNINQGSSSSVIESDEECAEIVKQTHIKP 363
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 32/87 (36%), Positives = 48/87 (55%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G +Q ++EI ++ FR+G+ L+ATSV GLDI + VI FD + V R+GRT
Sbjct: 451 GDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRT 510
Query: 217 GRKRN-GRCVILLTQGREAHNFQTSMQ 242
GR N G+ V + H Q+ ++
Sbjct: 511 GRCGNTGKAVSFFDDQSDGHLVQSLLK 537
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 129 (50.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/111 (31%), Positives = 58/111 (52%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N R V + D ++ +A+ V G + Q+E+ IM+ FR G L
Sbjct: 265 TQAVIFCNTRRKVDWLTDKMR------EANFTVSSMHGEMPQKERDSIMQDFRQGNSRVL 318
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
I+T V G+D+ ++ LVI +D + + R+GR+GR R G + +T
Sbjct: 319 ISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVT 369
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 37/133 (27%), Positives = 67/133 (50%)
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178
+T +IIF N ++ + L +K+ G+ +TQ ++ + F+ ++N
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNLG--LKSICLHGK---LTQNQRLSSLNSFKVNKYNI 448
Query: 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNF 237
LI+T VG GLD+ +I +VI FD + + R+GRT R R+G+ + +TQ + NF
Sbjct: 449 LISTQVGARGLDLQDIKIVINFDICSCK-EYIHRVGRTARAGRSGKSITFVTQ-YDVENF 506
Query: 238 QTSMQTCKSYVEK 250
+ ++K
Sbjct: 507 LAIEKQLNKKIDK 519
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 37/133 (27%), Positives = 67/133 (50%)
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178
+T +IIF N ++ + L +K+ G+ +TQ ++ + F+ ++N
Sbjct: 394 QTRNIIIFTNTCATAQKLNFFCRNLG--LKSICLHGK---LTQNQRLSSLNSFKVNKYNI 448
Query: 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNF 237
LI+T VG GLD+ +I +VI FD + + R+GRT R R+G+ + +TQ + NF
Sbjct: 449 LISTQVGARGLDLQDIKIVINFDICSCK-EYIHRVGRTARAGRSGKSITFVTQ-YDVENF 506
Query: 238 QTSMQTCKSYVEK 250
+ ++K
Sbjct: 507 LAIEKQLNKKIDK 519
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 129 (50.5 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V + D ++ + V A+ + Q + IM++FR+G LI
Sbjct: 281 TQSVIFVNTRRKVDWLTDKMRSRDHTVSAT-----HGDMDQNTRDIIMREFRSGSSRVLI 335
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQGRE 233
T + G+D+ ++ LVI FD P + R+GR+GR R G + +T E
Sbjct: 336 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSEDE 389
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 133 (51.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 32/99 (32%), Positives = 50/99 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G +TQ ++ ++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 270 GIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRI 329
Query: 214 GRTGRK-RNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR + G + +T RE + QT K ++++
Sbjct: 330 GRTGRAGKTGMAMTFITP-REKDMLRAIEQTTKRKMDRM 367
Score = 37 (18.1 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 375 DEVVIVQNKIKPMQRKRKNNP 395
D V +V IK M ++ N P
Sbjct: 411 DSVTVVAAAIKMMTKEPDNTP 431
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 42/136 (30%), Positives = 69/136 (50%)
Query: 116 EKGETTKVIIFANYRVVVAEIFDVL-KPLEPMVKASMFVGQSSGVTQQEQKEI-MKKFRA 173
E+G +IIF N + + DVL K LE M + + G QEQ+E + +A
Sbjct: 659 EQGFDPPIIIFVNQK----KGCDVLAKSLEKMGYNACTLHGGKG---QEQREFALSNLKA 711
Query: 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGR 232
G + L+AT V G+DI ++ +V+ +D K+ + R+GRTGR ++G + LT+
Sbjct: 712 GAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 771
Query: 233 EAHNFQTSMQTCKSYV 248
A ++ +S V
Sbjct: 772 SAVFYELKQAILESPV 787
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 42/136 (30%), Positives = 69/136 (50%)
Query: 116 EKGETTKVIIFANYRVVVAEIFDVL-KPLEPMVKASMFVGQSSGVTQQEQKEI-MKKFRA 173
E+G +IIF N + + DVL K LE M + + G QEQ+E + +A
Sbjct: 660 EQGFDPPIIIFVNQK----KGCDVLAKSLEKMGYNACTLHGGKG---QEQREFALSNLKA 712
Query: 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGR 232
G + L+AT V G+DI ++ +V+ +D K+ + R+GRTGR ++G + LT+
Sbjct: 713 GAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
Query: 233 EAHNFQTSMQTCKSYV 248
A ++ +S V
Sbjct: 773 SAVFYELKQAILESPV 788
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 42/136 (30%), Positives = 69/136 (50%)
Query: 116 EKGETTKVIIFANYRVVVAEIFDVL-KPLEPMVKASMFVGQSSGVTQQEQKEI-MKKFRA 173
E+G +IIF N + + DVL K LE M + + G QEQ+E + +A
Sbjct: 660 EQGFDPPIIIFVNQK----KGCDVLAKSLEKMGYNACTLHGGKG---QEQREFALSNLKA 712
Query: 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGR 232
G + L+AT V G+DI ++ +V+ +D K+ + R+GRTGR ++G + LT+
Sbjct: 713 GAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
Query: 233 EAHNFQTSMQTCKSYV 248
A ++ +S V
Sbjct: 773 SAVFYELKQAILESPV 788
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 132 (51.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 42/136 (30%), Positives = 69/136 (50%)
Query: 116 EKGETTKVIIFANYRVVVAEIFDVL-KPLEPMVKASMFVGQSSGVTQQEQKEI-MKKFRA 173
E+G +IIF N + + DVL K LE M + + G QEQ+E + +A
Sbjct: 660 EQGFDPPIIIFVNQK----KGCDVLAKSLEKMGYNACTLHGGKG---QEQREFALSNLKA 712
Query: 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGR 232
G + L+AT V G+DI ++ +V+ +D K+ + R+GRTGR ++G + LT+
Sbjct: 713 GAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKED 772
Query: 233 EAHNFQTSMQTCKSYV 248
A ++ +S V
Sbjct: 773 SAVFYELKQAILESPV 788
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 128 (50.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 41/140 (29%), Positives = 67/140 (47%)
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNT 178
E T+ I+F R V E+ + L+ E + G+ + Q ++ E +K+ G N
Sbjct: 247 EATRSIVFVRKRERVHELANWLR--EAGINNCYLEGE---MVQGKRNEAIKRLTEGRVNV 301
Query: 179 LIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNF 237
L+AT V G+DI ++ V FD +S + R+GRT R R G + L+ EAH+
Sbjct: 302 LVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV----EAHD- 356
Query: 238 QTSMQTCKSYVEKIINNKSI 257
+ Y+E+ I + I
Sbjct: 357 HLLLGKVGRYIEEPIKARVI 376
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/161 (23%), Positives = 72/161 (44%)
Query: 112 RLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171
R ++ + +IF +V ++++D LK L + G + Q +++ +MK F
Sbjct: 236 RFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLG--YNCAELHGD---IPQAKRERVMKSF 290
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQG 231
R + LIAT V GLD+ + V +D + + R+GRTGR I
Sbjct: 291 REAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAA 350
Query: 232 REAHNFQTSMQTCKSYVEKIINNKSIYANLAKNG-PRMIPA 271
++ + + +T + +++ I + + +NG P PA
Sbjct: 351 KDEKHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPLPKPA 391
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 38/161 (23%), Positives = 72/161 (44%)
Query: 112 RLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171
R ++ + +IF +V ++++D LK L + G + Q +++ +MK F
Sbjct: 236 RFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLG--YNCAELHGD---IPQAKRERVMKSF 290
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQG 231
R + LIAT V GLD+ + V +D + + R+GRTGR I
Sbjct: 291 REAKIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAA 350
Query: 232 REAHNFQTSMQTCKSYVEKIINNKSIYANLAKNG-PRMIPA 271
++ + + +T + +++ I + + +NG P PA
Sbjct: 351 KDEKHLEEIEKTLGAPIQREIIEQPKIKRVDENGKPLPKPA 391
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 44/167 (26%), Positives = 85/167 (50%)
Query: 98 LKFIRL-REILE-SHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQ 155
LK+++ ++I + +++A+ T V++F VV +I L ++ + S+ G
Sbjct: 273 LKYLQFDKDIFTWKYMQVNAQSFCTDVVVVFVQLHVVADDIASDLG-VQGVPVQSLH-GD 330
Query: 156 SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGR 215
Q ++++ + F+ G+ L+AT + GLD+ +I V FD ++ + V R+GR
Sbjct: 331 RE---QCDREQALDDFKKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGR 387
Query: 216 TGRK-RNGRCVILLTQG--REAHNFQTSMQTCKSYV-EKIINNKSIY 258
TGR R G+ V L+T+ + A +Q K V +++I+ Y
Sbjct: 388 TGRAGRTGKAVTLITKKDWKAASELIDILQRAKQVVPDELISMAERY 434
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 127 (49.8 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V + + K E S G + Q E+ IM++FR+G LI
Sbjct: 269 TQAVIFCNTRRKVDTLTE--KMTENQFTVSCLHGD---MDQAERDTIMREFRSGSSRVLI 323
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQ 230
T + G+D+ ++ LVI +D + + R+GR+GR R G + +T+
Sbjct: 324 TTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTE 374
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 135 (52.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 47/155 (30%), Positives = 76/155 (49%)
Query: 112 RLHAEKGETTKVIIFANYRVVVAEIFDVLKPL---EP---MVKASMFVGQS-----SGVT 160
R+ EK E IIF + R + + +++ + EP V VG S S +
Sbjct: 376 RMKLEKAEHLSAIIFVDQRYIAYSLLLMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDS 435
Query: 161 Q---QEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
Q + Q E++++F E N LIATSV EEG+D+ + +LVI FD VQ GR
Sbjct: 436 QGLHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRA- 494
Query: 218 RKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKII 252
R+ R VI + + ++ + ++ + +EKI+
Sbjct: 495 RRAGSRYVITVEE-KDTAACDSDLKDFQQ-IEKIL 527
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V + D ++ + V A+ + Q + IM++FR+G LI
Sbjct: 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSAT-----HGDMDQNTRDIIMREFRSGSSRVLI 333
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
T + G+D+ ++ LVI FD P + R+GR+GR R G + +T
Sbjct: 334 TTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 127 (49.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 42/145 (28%), Positives = 71/145 (48%)
Query: 122 KVIIFANYRVVVAEIFDVLKPLE-PMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
+ ++FAN R V + L E P V G+ + Q ++ + +++F+ GE L+
Sbjct: 259 RTVVFANKRETVQYLSGKLYAEELPCV---WLEGK---MPQDKRNKAIERFKKGEVKVLV 312
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLTQGREAHNFQT 239
AT V GLDI +I VI FD + + R+GRTGR + G + L+ EAH+
Sbjct: 313 ATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGKKGTAISLV----EAHDMGV 368
Query: 240 SMQTCKSYVEKIINNKSIYANLAKN 264
+ + Y ++ ++ + I KN
Sbjct: 369 -IGKIERYTKERLSRRFIQELRPKN 392
>UNIPROTKB|F1NJ30 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR012562 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 GO:GO:0004386 GeneTree:ENSGT00680000100003
EMBL:AADN02028008 IPI:IPI00593310 ProteinModelPortal:F1NJ30
Ensembl:ENSGALT00000040804 ArrayExpress:F1NJ30 Uniprot:F1NJ30
Length = 271
Score = 123 (48.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 30/66 (45%), Positives = 35/66 (53%)
Query: 169 KKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVIL 227
K FR G F LIAT+V GLDI E+DLVI K + R GRTGR R G C+
Sbjct: 1 KGFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICF 60
Query: 228 LTQGRE 233
+ E
Sbjct: 61 YQRKEE 66
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 126 (49.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N R V D L E M +A+ V G + Q+E+ IM+ FR G L
Sbjct: 261 TQAVIFCNSRRKV----DWLT--EKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVL 314
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
I T + G+D+ ++ LVI +D + + R+GR+GR R G + +T
Sbjct: 315 ICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVT 365
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 130 (50.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 156 SSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGR 215
S +TQ ++ + KF+AGE N L+ T V GLDI +D+VI +D + + R+GR
Sbjct: 291 SGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIHRVGR 350
Query: 216 TGRK-RNGRCVILLTQ 230
T R R+G + L+ Q
Sbjct: 351 TARAGRSGVGISLVNQ 366
Score = 37 (18.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 340 QSNDIRTCFENITKKKKTFIDFLTQSSGEPVSAMDDE 376
+ +++ + E + + KK + +S G DDE
Sbjct: 389 EEDEVLSLLERVAEAKKLSAMNMKESGGRKRRGEDDE 425
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 126 (49.4 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 157 SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
SG Q +++I+ F++G+ L+AT++ GLDIGE+ VI +D + R+GRT
Sbjct: 280 SGRAQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRT 339
Query: 217 GRK-RNGRCVILLTQ 230
GR +G + L+++
Sbjct: 340 GRAGASGEAISLVSK 354
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 130 (50.8 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 48/161 (29%), Positives = 82/161 (50%)
Query: 99 KFIRLREILESH---FRLH-AEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154
+F+RLR E + LH ++ T +VI+F + + V L +KA+ G
Sbjct: 518 EFVRLRPGREDKRLGYLLHLCKEVYTGRVIVFFRQKKEAHRVRIVFGLLG--LKAAELHG 575
Query: 155 QSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLG 214
S Q+++ + ++ FR G N L+AT + GLDI ++ VI ++A +S V R+G
Sbjct: 576 SMS---QEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVG 632
Query: 215 RTGRK-RNGR-CVILLTQGREAHNFQTSMQTCKSYVEKIIN 253
RT R R+GR C I R+ + +++ K+ KI++
Sbjct: 633 RTARAGRSGRACTIAAEPDRKV--VKAAVKAGKAQGAKIVS 671
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 129 (50.5 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 41/144 (28%), Positives = 69/144 (47%)
Query: 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181
K+IIF + V + ++ V+ G S Q E+ ++++FR+G+ N L+A
Sbjct: 532 KIIIFVETKRRVDNLVRFIRSFG--VRCGAIHGDKS---QSERDFVLREFRSGKSNILVA 586
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-GRCVILLTQGREAHNFQTS 240
T V GLD+ I VI FD ++ + R+GRTGR G T+ A +
Sbjct: 587 TDVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNN-AKQAKAL 645
Query: 241 MQTCKSYVEKIINNKSIYANLAKN 264
+ + ++I N ++ NLA+N
Sbjct: 646 VDVLREANQEI--NPAL-ENLARN 666
>UNIPROTKB|I3LRT7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000031627 OMA:VGDERTM Uniprot:I3LRT7
Length = 290
Score = 123 (48.4 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR 220
Q+E+++ + FR G+ L+ATSV GLDI + VI FD + + V R+GRTGR
Sbjct: 143 QREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 202
Query: 221 N-GRCVILLTQGREAH 235
N GR + + ++H
Sbjct: 203 NTGRAISFFDES-DSH 217
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 126 (49.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 104 REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQE 163
+E L HF L EK + ++IIF R + +L E + A V S + Q +
Sbjct: 233 KEALLQHF-LVTEKSQ--QIIIFTATRSDTDRLAKLLT--EQNLNA---VALSGELNQGQ 284
Query: 164 QKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
+ +IM+ F G+ L+ T + GLD+ + VI FD K + V R+GRTGR
Sbjct: 285 RNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGR 339
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 126 (49.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 38/115 (33%), Positives = 57/115 (49%)
Query: 104 REILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQE 163
+E L HF L EK + ++IIF R + +L E + A V S + Q +
Sbjct: 233 KEALLQHF-LVTEKSQ--QIIIFTATRSDTDRLAKLLT--EQNLNA---VALSGELNQGQ 284
Query: 164 QKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
+ +IM+ F G+ L+ T + GLD+ + VI FD K + V R+GRTGR
Sbjct: 285 RNQIMESFSKGQHKILVTTDLASRGLDLINVSHVINFDMPKHTEEFVHRIGRTGR 339
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 127 (49.8 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 26/73 (35%), Positives = 44/73 (60%)
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
++Q ++ + KF++ + N L+AT V GLDI +D+VI +D + R+GRT R
Sbjct: 396 LSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTAR 455
Query: 219 K-RNGRCVILLTQ 230
R+G+ + L+TQ
Sbjct: 456 AGRSGKSISLITQ 468
>DICTYBASE|DDB_G0269986 [details] [associations]
symbol:DDB_G0269986 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269986
GO:GO:0005524 EMBL:AAFI02000005 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_646448.1
EnsemblProtists:DDB0190716 GeneID:8617407 KEGG:ddi:DDB_G0269986
InParanoid:Q55CN3 Uniprot:Q55CN3
Length = 796
Score = 129 (50.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 39/105 (37%), Positives = 52/105 (49%)
Query: 164 QKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-G 222
+ E K F G+ L+AT + G+DIG ID VI FD +PI + R+GRT R N G
Sbjct: 685 RSENWKSFLNGDKEFLVATDIASRGIDIGLIDHVILFDFPSNPIDYLHRIGRTARAGNRG 744
Query: 223 RCVILLTQGRE--AHNFQTSMQTCKSY-VEKIINNKSIYANLAKN 264
L+T A + S++ K Y +E I NN Y N N
Sbjct: 745 LVTCLITHKDRYLADEIKESIR--KGYTLENISNNN--YNNKNNN 785
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 31/70 (44%), Positives = 40/70 (57%)
Query: 158 GVTQQEQKEI-MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G Q+Q+EI +K FR F L+AT+V GLDI E+DLV+ K + R GRT
Sbjct: 349 GDIPQKQREITLKGFRNDNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRT 408
Query: 217 GRK-RNGRCV 225
GR R G C+
Sbjct: 409 GRAGRTGVCI 418
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 125 (49.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 37/111 (33%), Positives = 57/111 (51%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE-IMKKFRAGEFNTL 179
T+ +IF N R V + D L + V A G +Q Q++ IMK+FR+G L
Sbjct: 265 TQAVIFCNTRRKVDWLTDKLTARDFTVSAM------HGDMEQAQRDVIMKEFRSGSSRVL 318
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
IAT + G+D+ ++ LVI +D + + R+GR GR R G + +T
Sbjct: 319 IATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVT 369
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 126 (49.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 31/99 (31%), Positives = 50/99 (50%)
Query: 154 GQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRL 213
G ++Q ++ +++KF+ G L+AT V GLDI + V FD + P V R+
Sbjct: 269 GIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTHVYNFDIPQDPESYVHRI 328
Query: 214 GRTGRK-RNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
GRTGR + G + +T RE +T K +E++
Sbjct: 329 GRTGRAGKTGVAMTFVTP-REIGQLHHIERTTKRKMERM 366
>TAIR|locus:2167903 [details] [associations]
symbol:PRH75 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IEA;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0001510 "RNA methylation" evidence=RCA] [GO:0051604 "protein
maturation" evidence=RCA] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0017151 "DEAD/H-box RNA helicase binding"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730
GO:GO:0003723 GO:GO:0016070 GO:GO:0017151 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB019235 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 EMBL:X99938 EMBL:AY039576 EMBL:AY056137
EMBL:BT008581 IPI:IPI00520493 RefSeq:NP_201025.1 UniGene:At.22598
ProteinModelPortal:Q39189 SMR:Q39189 IntAct:Q39189 STRING:Q39189
PaxDb:Q39189 PRIDE:Q39189 EnsemblPlants:AT5G62190.1 GeneID:836340
KEGG:ath:AT5G62190 GeneFarm:918 TAIR:At5g62190 InParanoid:Q39189
OMA:QCEPPRE PhylomeDB:Q39189 ProtClustDB:CLSN2687322
Genevestigator:Q39189 GermOnline:AT5G62190 Uniprot:Q39189
Length = 671
Score = 128 (50.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEI-MKKFRAGEFNTLI 180
+ IIFA +V V+E+ +L + G Q Q+E+ + FR G+F TL+
Sbjct: 352 QTIIFAETKVQVSELSGLLDGSRAL----------HGEIPQSQREVTLAGFRNGKFATLV 401
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREA 234
AT+V GLDI ++ L+I + + + R GRTGR N + L R++
Sbjct: 402 ATNVAARGLDINDVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVAVTLYDSRKS 455
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 126 (49.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
G+ Q+++ +M FR G+F L+AT V G+DI I VI +D V R GRTG
Sbjct: 275 GMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTG 334
Query: 218 RKRN-GRCVILLT 229
R N G+ + +T
Sbjct: 335 RAGNSGKAITFIT 347
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 126 (49.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
G+ Q+++ +M FR G+F L+AT V G+DI I VI +D V R GRTG
Sbjct: 275 GMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTG 334
Query: 218 RKRN-GRCVILLT 229
R N G+ + +T
Sbjct: 335 RAGNSGKAITFIT 347
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 130 (50.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASM-FVGQSS 157
KF++L E+L H++ EKG VIIF + + E D L L+ +++AS +
Sbjct: 604 KFLKLLELL-GHYQ---EKGS---VIIFVDKQ----EHADGL--LKDLMRASYPCLSLHG 650
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
G+ Q ++ I+ F+ G L+ATSV GLD+ ++ LV+ + V R GRTG
Sbjct: 651 GIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTG 710
Query: 218 RKRN-GRCVILLTQ 230
R N G +T+
Sbjct: 711 RAGNKGFAYTFITE 724
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 126 (49.4 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ + FRAG+ LI T++ G+D ++LVI +D S ++ + R+GRTGR
Sbjct: 339 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 398
Query: 220 RN-GRCVILLTQ 230
N G+ + T+
Sbjct: 399 GNKGKAITFFTE 410
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ + FRAG+ LI T++ G+D ++LVI +D S ++ + R+GRTGR
Sbjct: 448 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 507
Query: 220 RN-GRCVILLTQ 230
N G+ V T+
Sbjct: 508 GNRGKAVTFFTE 519
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 127 (49.8 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ + FRAG+ LI T++ G+D ++LVI +D S ++ + R+GRTGR
Sbjct: 448 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 507
Query: 220 RN-GRCVILLTQ 230
N G+ V T+
Sbjct: 508 GNRGKAVTFFTE 519
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 127 (49.8 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 37/126 (29%), Positives = 62/126 (49%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ ++ FR+G+ LI T++ G+D I+LVI +D S ++ + R+GRTGR
Sbjct: 449 TQQQRDNVVSSFRSGKIWVLICTALLARGIDFKGINLVINYDFPTSAVEYIHRIGRTGRA 508
Query: 220 -RNGRCVILLTQGREA--HNFQTSMQTCKSYV-EKIINNKSIYANL----AKNGPRMIPA 271
G+ V T+ + + T ++ V + +I K I + L PR
Sbjct: 509 GHKGKAVTFFTEDDKPLLRSIATVIKKAGCPVPDYMIGFKKIKSKLKHQLVTKPPRRAAI 568
Query: 272 HVTPRI 277
TPR+
Sbjct: 569 RTTPRM 574
>UNIPROTKB|Q9KNA4 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0016070 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT ProtClustDB:CLSK869483
PIR:C82506 RefSeq:NP_232462.1 ProteinModelPortal:Q9KNA4
DNASU:2612119 GeneID:2612119 KEGG:vch:VCA0061 PATRIC:20084709
Uniprot:Q9KNA4
Length = 452
Score = 125 (49.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 41/140 (29%), Positives = 65/140 (46%)
Query: 107 LESHFRL--HAEKGETT--KVIIFANYRVVV---AEIFDVLKPLEPMVKASM-FVGQSSG 158
+ HF L H + E +++ A YR V+ A D + E + + ++ V S
Sbjct: 224 ITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGN 283
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
+ Q ++ IM +F F L+ T V GLDI + VI FD K + V R+GRTGR
Sbjct: 284 LNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGR 343
Query: 219 KRNGRCVILLTQGREAHNFQ 238
N + L ++ +F+
Sbjct: 344 AGNKGDAMSLVGPKDWESFK 363
>TIGR_CMR|VC_A0061 [details] [associations]
symbol:VC_A0061 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PKFIVAT
ProtClustDB:CLSK869483 PIR:C82506 RefSeq:NP_232462.1
ProteinModelPortal:Q9KNA4 DNASU:2612119 GeneID:2612119
KEGG:vch:VCA0061 PATRIC:20084709 Uniprot:Q9KNA4
Length = 452
Score = 125 (49.1 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 41/140 (29%), Positives = 65/140 (46%)
Query: 107 LESHFRL--HAEKGETT--KVIIFANYRVVV---AEIFDVLKPLEPMVKASM-FVGQSSG 158
+ HF L H + E +++ A YR V+ A D + E + + ++ V S
Sbjct: 224 ITQHFYLCDHLDHKEALLDRILADAEYRQVIIFTATRADTDRLTEKLNQNNLKAVALSGN 283
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
+ Q ++ IM +F F L+ T V GLDI + VI FD K + V R+GRTGR
Sbjct: 284 LNQTQRNTIMGQFERAVFKILVTTDVASRGLDIPAVTHVINFDMPKHTEEYVHRVGRTGR 343
Query: 219 KRNGRCVILLTQGREAHNFQ 238
N + L ++ +F+
Sbjct: 344 AGNKGDAMSLVGPKDWESFK 363
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 126 (49.4 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 168 MKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN-GRCVI 226
+ KF+ G + L+AT V GLDI +DLVI +D + + V R+GRT R N GR +
Sbjct: 401 LNKFKQGTKSILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSGRAIT 460
Query: 227 LLTQ 230
++TQ
Sbjct: 461 IVTQ 464
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 127 (49.8 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 38/132 (28%), Positives = 68/132 (51%)
Query: 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-V 159
+RL+ + + F L EK + + + F N + VLK L K S V + SG +
Sbjct: 428 LRLKPL--TVFAL-VEKYKWKRFLCFTNSSDQATRLTFVLKVL--FQKYSTKVSELSGNL 482
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
+ + + E ++ F AG+ N LI + G+D+ ++D+V+ ++ + + R+GRT R
Sbjct: 483 SAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLSYETPRHITTYIHRVGRTARA 542
Query: 220 -RNGRCVILLTQ 230
R G V +LT+
Sbjct: 543 GRKGTAVTVLTE 554
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 126 (49.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ + FRAG+ LI T++ G+D ++LVI +D S ++ + R+GRTGR
Sbjct: 447 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 506
Query: 220 RN-GRCVILLTQ 230
N G+ + T+
Sbjct: 507 GNKGKAITFFTE 518
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 126 (49.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ ++ FRAG+ LI T++ G+D +++VI +D S ++ + R+GRTGR
Sbjct: 441 TQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRA 500
Query: 220 -RNGRCVILLTQ 230
G+ V T+
Sbjct: 501 GHTGKAVTFFTE 512
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 126 (49.4 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ ++ FRAG+ LI T++ G+D +++VI +D S ++ + R+GRTGR
Sbjct: 442 TQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVINYDLPTSAVEYIHRIGRTGRA 501
Query: 220 -RNGRCVILLTQ 230
G+ V T+
Sbjct: 502 GHTGKAVTFFTE 513
>FB|FBgn0010220 [details] [associations]
symbol:Dbp45A "DEAD box protein 45A" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS;NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE013599
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
GeneTree:ENSGT00670000098028 EMBL:L13612 EMBL:Z23266 EMBL:AY058728
PIR:S38329 RefSeq:NP_476927.1 UniGene:Dm.4231
ProteinModelPortal:Q07886 SMR:Q07886 PaxDb:Q07886
EnsemblMetazoa:FBtr0088564 GeneID:35917 KEGG:dme:Dmel_CG12759
CTD:35917 FlyBase:FBgn0010220 InParanoid:Q07886 OMA:CQLLSMT
OrthoDB:EOG431ZDJ PhylomeDB:Q07886 GenomeRNAi:35917 NextBio:795815
Bgee:Q07886 GermOnline:CG12759 Uniprot:Q07886
Length = 521
Score = 125 (49.1 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 36/129 (27%), Positives = 63/129 (48%)
Query: 106 ILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQK 165
+L R + E+ E V+IF N + + LK +E + G + Q+E+
Sbjct: 237 VLIEALRKYREENENANVMIFTNTKKYCQLLSMTLKNME--IDNVCLHGF---MRQKERV 291
Query: 166 EIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRC 224
+ +F++ + TLIAT V GLDI ++LV+ ++P + + R+GRT R R G
Sbjct: 292 AALSRFKSNQIRTLIATDVAARGLDIPSVELVMNHMLPRTPKEYIHRVGRTARAGRKGMS 351
Query: 225 VILLTQGRE 233
+ + R+
Sbjct: 352 ISIFRFPRD 360
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 124 (48.7 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 39/127 (30%), Positives = 63/127 (49%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE-IMKKFRAGEFNTL 179
T+ +IF N R V D L E M V G +Q++++ IMK+FR+G L
Sbjct: 273 TQAVIFINTRRKV----DWLT--EKMHARDFTVSALHGDMEQKERDVIMKEFRSGSSRVL 326
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQG--REAHN 236
I T + G+D+ ++ LVI +D + + R+GR GR R G + ++T+ R +
Sbjct: 327 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMITEDDKRTLRD 386
Query: 237 FQTSMQT 243
+T T
Sbjct: 387 IETFYNT 393
Score = 39 (18.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 40 ENLVTYGLRSFYNNLV-EVSKEDGSCPI 66
E L G+R FY N+ E K D C +
Sbjct: 239 EELTLEGIRQFYINVEKEEWKLDTLCDL 266
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 126 (49.4 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 37/125 (29%), Positives = 62/125 (49%)
Query: 109 SHFRLHAEK-GETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE- 166
SH + + T KVI+F + + V D L ++ ++ V G +Q +E
Sbjct: 475 SHMQTFLQSMSSTDKVIVFVSRKAVA----DHLS--SDLILGNISVESLHGDREQRDREK 528
Query: 167 IMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCV 225
++ F+ G+ LIAT + GLD+ ++ V FD ++ + V R+GRTGR R G +
Sbjct: 529 ALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSI 588
Query: 226 ILLTQ 230
LT+
Sbjct: 589 TTLTR 593
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 123 (48.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 37/111 (33%), Positives = 56/111 (50%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE-IMKKFRAGEFNTL 179
T+ +IF N R V + D L + V A G Q Q++ IMK+FR+G L
Sbjct: 263 TQAVIFCNTRRKVDWLTDKLTARDFTVSAM------HGDMDQAQRDLIMKEFRSGSSRVL 316
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
IAT + G+D+ ++ LVI +D + + R+GR GR R G + +T
Sbjct: 317 IATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVAINFVT 367
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 123 (48.4 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 35/111 (31%), Positives = 57/111 (51%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE-IMKKFRAGEFNTL 179
T+ II+ N R V D+L + M V G Q+ ++ IM++FR+G L
Sbjct: 263 TQSIIYCNTRKKV----DILT--QEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 316
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
+ T + G+D+ ++ LVI +D SP + R+GR+GR R G + +T
Sbjct: 317 VTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVT 367
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 123 (48.4 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 35/111 (31%), Positives = 57/111 (51%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE-IMKKFRAGEFNTL 179
T+ II+ N R V D+L + M V G Q+ ++ IM++FR+G L
Sbjct: 263 TQSIIYCNTRKKV----DILT--QEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVL 316
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
+ T + G+D+ ++ LVI +D SP + R+GR+GR R G + +T
Sbjct: 317 VTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGVAINFVT 367
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 123 (48.4 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 33/112 (29%), Positives = 60/112 (53%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKE-IMKKFRAGEFNTL 179
T+ +IF N + V D L + +++++ V G +QE+++ +M FR G L
Sbjct: 266 TQCVIFCNTKKKV----DWLS--QRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVL 319
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLTQ 230
I+T V G+D+ ++ LVI +D + + R+GR+GR R G + +T+
Sbjct: 320 ISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITK 371
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 123 (48.4 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 33/99 (33%), Positives = 52/99 (52%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG-VTQQEQKEIMKKFRAGEFNTL 179
T+ +IF N + V D L E M + V G + Q+E+ IM +FR+G+ L
Sbjct: 275 TQAVIFCNTKRKV----DYLS--EKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVL 328
Query: 180 IATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
I T V G+D+ ++ LVI +D + + R+GR+GR
Sbjct: 329 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 367
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 126 (49.4 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR 220
Q+E+++ + FR G L+ATSV GLDI ++ V+ FD S + V R+GRTGR
Sbjct: 565 QREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCG 624
Query: 221 N-GRCV 225
N GR V
Sbjct: 625 NTGRAV 630
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 125 (49.1 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 434 VLIFAKKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 488
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 489 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 527
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 125 (49.1 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 435 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 125 (49.1 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 435 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 125 (49.1 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 435 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 125 (49.1 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 435 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 125 (49.1 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 435 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 489
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 490 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 528
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 453 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 507
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 508 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 546
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 41/138 (29%), Positives = 65/138 (47%)
Query: 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS 156
H I R + R G+ K + F N + EI + LK M KA+ ++
Sbjct: 212 HTYIICERREKNDYVRRIMHMGDV-KAVAFLNDPFRLDEITEKLK-FRKM-KAAALHAEA 268
Query: 157 SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
S +QE++ M+ FR G+ L+AT + G+DI ++ VI + + + + R GRT
Sbjct: 269 S---KQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHVIHLELPDTVDQYIHRSGRT 325
Query: 217 GRK-RNGRCVILLTQGRE 233
GR + G V L+T E
Sbjct: 326 GRMGKEGTVVSLVTPQEE 343
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 462 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT 516
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 517 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 555
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
Identities = 27/62 (43%), Positives = 39/62 (62%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQ+E++E ++ FR+G+ L+AT+V GLDI + VI FD + V R+GRTGR
Sbjct: 594 TQKEREEALRCFRSGDCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRM 653
Query: 220 RN 221
N
Sbjct: 654 GN 655
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
++Q + + KF++G +TL+AT V GLDI +D+VI +D + R+GRT R
Sbjct: 319 LSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTAR 378
Query: 219 K-RNGRCVILLTQ 230
R G+ + L+TQ
Sbjct: 379 AGRAGKSIALVTQ 391
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM-VKASMFVGQSSGVTQQEQKEIMKKF 171
+ AE + T IIF N + V +I V K L+ A+ G + Q ++ + F
Sbjct: 245 IDAEGEKCTNAIIFCNRKTDV-DI--VAKSLQKYGYDAAPIHGD---LDQSQRTRTLDGF 298
Query: 172 RAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVIL 227
R G+ L+A+ V GLD+ + V FD P V R+GRTGR R+G+ + L
Sbjct: 299 REGKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITL 355
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 43/175 (24%), Positives = 80/175 (45%)
Query: 86 INIMSSEYAWSHLKFIRLREIL---ESHFRL--HAEK---GETTKVIIFANYRVVVAEIF 137
+NI S + + +H + ++ E++ E R+ H EK K ++F + + EI
Sbjct: 346 VNIGSMDLSANH-RITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEIT 404
Query: 138 DVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLV 197
L+ + A G QQE+ ++ +F+ G+ ++AT V G+D+ +I V
Sbjct: 405 RFLR--QDGWPALSIHGDKQ---QQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHV 459
Query: 198 ICFDAQKSPIKMVQRLGRTGRK-RNGRCVILLT--QGREAHNFQTSMQTCKSYVE 249
I +D + V R+GRTGR G + T ++A + T + K ++
Sbjct: 460 INYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQID 514
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
Identities = 48/171 (28%), Positives = 81/171 (47%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
KF RL E+L ++ + + +IF R A+ ++L+ L + K + G
Sbjct: 611 KFNRLLELLGELYK----DDDDVRSLIFVE-RQEKAD--ELLREL--LRKGYGCMSLHGG 661
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
Q ++ + F++G +IATSV GLD+ ++ LV+ +DA V R GRTGR
Sbjct: 662 KDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGR 721
Query: 219 KRN-GRCVILLTQGRE--AHNFQTSM-QTCKSYVEKIINNKSIYANLAKNG 265
N G V +T+ +E A ++ Q+ + EK+I + + K G
Sbjct: 722 AGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKLIEMRKAFREKVKAG 772
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 153 VGQSSG-VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQ 211
VG G + Q +++E + KFR GE LIAT + G+D + +VI FD +S +
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
Query: 212 RLGRTGRKRN-GRCVILLTQ 230
R+GRTGR N G+ V T+
Sbjct: 375 RIGRTGRAGNTGQAVTFFTK 394
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 33/107 (30%), Positives = 53/107 (49%)
Query: 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181
K I+FAN + V ++FD L ++ + G V Q+++ +I+++F G + L+A
Sbjct: 255 KAIVFANTKHVCEKVFDHLNA--DKIRVGLLTGD---VPQKKRLKILEEFTDGTVDILVA 309
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK-RNGRCVIL 227
T V GL I + V +D V R+GRTGR G + L
Sbjct: 310 TDVAARGLHIPSVTHVFNYDLPDDCQDYVHRIGRTGRAGETGHAISL 356
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 34/99 (34%), Positives = 51/99 (51%)
Query: 123 VIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIAT 182
V+IFA + V I + L ++K V G Q+E+ + ++ FR G+ + L+AT
Sbjct: 431 VLIFAEKKADVDAIHEYL-----LLKGVEAVAIHGGKDQEERTKAIEAFRDGKKDVLVAT 485
Query: 183 SVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRN 221
V +GLD I VI +D + V R+GRTGR N
Sbjct: 486 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGN 524
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 160 TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK 219
TQQ++ + FRAG+ LI T++ G+D ++LVI +D S ++ + R+GRTGR
Sbjct: 355 TQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRA 414
Query: 220 -RNGRCVILLTQ 230
G+ V T+
Sbjct: 415 GHKGKAVTFFTE 426
>POMBASE|SPAC1093.05 [details] [associations]
symbol:SPAC1093.05 "ATP-dependent RNA helicase Hca4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1093.05 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
OMA:MFERKNQ OrthoDB:EOG4R53B0 PIR:T50068 RefSeq:NP_594652.1
ProteinModelPortal:Q9UTP9 SMR:Q9UTP9 STRING:Q9UTP9
EnsemblFungi:SPAC1093.05.1 GeneID:2541630 KEGG:spo:SPAC1093.05
NextBio:20802723 Uniprot:Q9UTP9
Length = 735
Score = 125 (49.1 bits), Expect = 0.00012, P = 0.00012
Identities = 40/148 (27%), Positives = 66/148 (44%)
Query: 105 EILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQ 164
+IL R H + K I+F + V +++ + + P + G+ T+ E
Sbjct: 272 DILFGFIRTHLK----FKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTE- 326
Query: 165 KEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGR 223
+ KF + L T + GLD +D VI DA + + R+GRT R R+G
Sbjct: 327 --VTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGN 384
Query: 224 CVILLTQGREAHNFQTSMQTCKSYVEKI 251
++LL EA F +++ K VE+I
Sbjct: 385 ALLLLLPSEEA--FLKRLESKKIAVERI 410
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160
IR R+ L+ KG +++V++F + + VL L +K S G +T
Sbjct: 354 IRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLG--LKVSELHG---ALT 408
Query: 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK- 219
Q+++ + +K F++ E LI T + GLDI +I+LVI +D K+ + R+GRT R
Sbjct: 409 QEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAG 468
Query: 220 RNGRCVILLTQGRE 233
R+G + + + +
Sbjct: 469 RDGTSITFVGESSQ 482
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 101 IRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVT 160
IR R+ L+ KG +++V++F + + VL L +K S G +T
Sbjct: 354 IRKRDQLKPALLYQLLKGVSSRVVVFVARKETAHRLRIVLGLLG--LKVSELHG---ALT 408
Query: 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRK- 219
Q+++ + +K F++ E LI T + GLDI +I+LVI +D K+ + R+GRT R
Sbjct: 409 QEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAG 468
Query: 220 RNGRCVILLTQGRE 233
R+G + + + +
Sbjct: 469 RDGTSITFVGESSQ 482
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR 220
Q+E+++ + FR+G+ L+ATSV GLDI ++ V+ FD + V R+GRTGR
Sbjct: 469 QREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRTGRCG 528
Query: 221 N-GRCV 225
N GR V
Sbjct: 529 NTGRAV 534
>FB|FBgn0029880 [details] [associations]
symbol:CG14443 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:AE014298 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:NP_572330.2 ProteinModelPortal:Q9W3Y5 SMR:Q9W3Y5
IntAct:Q9W3Y5 MINT:MINT-1614529 PRIDE:Q9W3Y5 GeneID:31595
KEGG:dme:Dmel_CG14443 UCSC:CG14443-RA FlyBase:FBgn0029880
OrthoDB:EOG4DFN5J PhylomeDB:Q9W3Y5 GenomeRNAi:31595 NextBio:774378
Bgee:Q9W3Y5 GermOnline:CG14443 Uniprot:Q9W3Y5
Length = 438
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 34/107 (31%), Positives = 53/107 (49%)
Query: 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181
KV+I+ + VV E+ D+++ P G G T QE + I+ F G +N ++A
Sbjct: 283 KVVIYVKRQKVVEELVDLIRNCVPCE------GIHGGRTAQENQGIIHDFGTGAYNIIVA 336
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG-RKRNGRCVIL 227
T + LD+ I VI +D + K VQR+ RTG N C ++
Sbjct: 337 TQMTSNCLDVPGIRYVINYDFPDNIDKYVQRMSRTGCLSYNRNCEVI 383
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 36/132 (27%), Positives = 64/132 (48%)
Query: 90 SSEYAWSHLKFI---RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM 146
+S+ H+ F+ R RE+L SH KG +V++F + + + L +
Sbjct: 216 ASDQVTQHVHFVDKKRKRELL-SHM---IGKGNWQQVLVFTRTKHGANHLAEQLN--KDG 269
Query: 147 VKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSP 206
++++ G S Q + + F++G+ L+AT + GLDI E+ V+ ++ P
Sbjct: 270 IRSAAIHGNKS---QGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVP 326
Query: 207 IKMVQRLGRTGR 218
V R+GRTGR
Sbjct: 327 EDYVHRIGRTGR 338
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 128 (50.1 bits), Expect = 0.00013, P = 0.00013
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 146 MVKASMFVGQSSGVTQ--QEQKEIM--KKFRAGEFNTLIATSVGEEGLDIGEIDLVICFD 201
MV S ++ + + + Q+ +++ +KFR+G N L+ATSV EEG+D+ +LVICFD
Sbjct: 464 MVGTSRYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCNLVICFD 523
Query: 202 AQKSPIKMVQRLGRTGRKRNGRCVILLTQ 230
+ +QR GR R R + +++ +
Sbjct: 524 MPANLKSFIQRRGRA-RMRESKLHLMIEE 551
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
Identities = 41/151 (27%), Positives = 70/151 (46%)
Query: 97 HLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQS 156
H KF++L E+L ++ E+G + I+F + + +I D L A +
Sbjct: 535 HQKFLKLLELLGMYY----EEGSS---IVFVDKQEKADDIVDQLMRTGYNSVAPLH---- 583
Query: 157 SGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT 216
G+ Q ++ + F+ G L+ATSV GLD+ + LV+ +D V R+GRT
Sbjct: 584 GGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRT 643
Query: 217 GRKRNGRCVILLTQGREAHNFQTSMQTCKSY 247
GR GR T H + + + C+++
Sbjct: 644 GRA--GRKGYAYTFVLPEHQEKMAGEICRAF 672
>TIGR_CMR|CJE_0778 [details] [associations]
symbol:CJE_0778 "excinuclease ABC, B subunit"
species:195099 "Campylobacter jejuni RM1221" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0009380 "excinuclease repair complex"
evidence=ISS] [GO:0009381 "excinuclease ABC activity" evidence=ISS]
HAMAP:MF_00204 InterPro:IPR001650 InterPro:IPR001943
InterPro:IPR004807 InterPro:IPR006935 Pfam:PF00271 Pfam:PF02151
Pfam:PF04851 PROSITE:PS50151 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0090305 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006289
GO:GO:0009432 GO:GO:0009381 eggNOG:COG0556 HOGENOM:HOG000073580
KO:K03702 ProtClustDB:PRK05298 Gene3D:4.10.860.10
InterPro:IPR024759 PANTHER:PTHR24029 Pfam:PF12344 SUPFAM:SSF46600
TIGRFAMs:TIGR00631 OMA:CIYGLGI RefSeq:YP_178784.1
ProteinModelPortal:Q5HVA1 SMR:Q5HVA1 STRING:Q5HVA1 GeneID:3230730
KEGG:cjr:CJE0778 PATRIC:20043305 BioCyc:CJEJ195099:GJC0-794-MONOMER
Uniprot:Q5HVA1
Length = 657
Score = 124 (48.7 bits), Expect = 0.00013, P = 0.00013
Identities = 46/171 (26%), Positives = 80/171 (46%)
Query: 119 ETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG-----QSSGVTQQEQKEIMKKFRA 173
+ K +I N RV+V + K E + + + +G S + E+ EI++ R+
Sbjct: 437 DEAKKVIQRNERVLVTVL--TKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRS 494
Query: 174 GEFNTLIATSVGEEGLDIGEIDLVICFDAQK-----SPIKMVQRLGRTGRKRNGRCVILL 228
G F+ LI ++ EGLD+ E+ L+ DA K S ++Q +GR R NG+ +LL
Sbjct: 495 GAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGK--VLL 552
Query: 229 TQGREAHNFQTSMQTCKSYVE-KIINNKSIYANLAKNGPRMIPAHVTPRIK 278
+ + Q +M T + ++ NK Y N+ P + H+ +K
Sbjct: 553 FCKKITKSMQEAMDTTNERRKLQMAYNKK-Y-NIT---PTSVKRHIEESLK 598
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 127 (49.8 bits), Expect = 0.00014, P = 0.00014
Identities = 45/147 (30%), Positives = 73/147 (49%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASM-FVGQSS 157
KF +L E+L ++ E G +I+F + + E D+L L ++KAS +
Sbjct: 743 KFFKLLELLG----IYQEAGS---IIVFVDKQ----ENADIL--LRDLMKASYPCMSLHG 789
Query: 158 GVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTG 217
G+ Q ++ + F++G+ LIATSV GLD+ ++ LV+ +D V R GRTG
Sbjct: 790 GIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTG 849
Query: 218 RK-RNGRCVILLT--QGREAHNFQTSM 241
R + G +T Q R A + +M
Sbjct: 850 RAGKKGSAYTFITPEQSRYAGDIIRAM 876
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V + + L+ V A + + Q E+ IMK+FR+G LI
Sbjct: 263 TQAVIFCNTRSKVEFLTNKLREQHFTVSAI-----HADLPQAERDTIMKEFRSGSSRILI 317
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
+T + G+D+ ++ LVI +D + + R+GR GR R G + +T
Sbjct: 318 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 367
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 34/110 (30%), Positives = 56/110 (50%)
Query: 121 TKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLI 180
T+ +IF N R V + + L+ V A + + Q E+ IMK+FR+G LI
Sbjct: 263 TQAVIFCNTRSKVEFLTNKLREQHFTVSAI-----HADLPQAERDTIMKEFRSGSSRILI 317
Query: 181 ATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR-KRNGRCVILLT 229
+T + G+D+ ++ LVI +D + + R+GR GR R G + +T
Sbjct: 318 STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 367
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 161 QQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKR 220
Q+E+++ + FR G+ L+ATSV GLDI + VI FD + + V R+GRTGR
Sbjct: 549 QREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 608
Query: 221 N-GRCVILLTQGREAH 235
N GR + + H
Sbjct: 609 NTGRAISFFDTDSDNH 624
WARNING: HSPs involving 145 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 395 340 0.00095 116 3 11 22 0.38 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 395
No. of states in DFA: 598 (64 KB)
Total size of DFA: 209 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.51u 0.07s 24.58t Elapsed: 00:00:17
Total cpu time: 24.54u 0.07s 24.61t Elapsed: 00:00:17
Start: Thu Aug 15 12:36:38 2013 End: Thu Aug 15 12:36:55 2013
WARNINGS ISSUED: 2