RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4150
(395 letters)
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 106 bits (264), Expect = 8e-27
Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 15/220 (6%)
Query: 27 RDFHVTHSLASALENLVTYGLRSFYNNLVEVSKEDGSCPILGKDNDLQNLLQQLKPKLDI 86
+ L A+E L T GL + + ++ +E + + +++K + +
Sbjct: 74 LYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSD--KRMKKAISL 131
Query: 87 NIMSSEYAWSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPM 146
+ + E H K +L+EI+ ++ + +K+I+F NYR +I + L +
Sbjct: 132 LVQAKEIGLDHPKMDKLKEIIREQL----QRKQNSKIIVFTNYRETAKKIVNELV--KDG 185
Query: 147 VKASMFVGQSSGV-----TQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFD 201
+KA FVGQ+S +Q+EQK I+ +F GEFN L+ATSVGEEGLD+ E+DLV+ ++
Sbjct: 186 IKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYE 245
Query: 202 AQKSPIKMVQRLGRTGRKRNGRCVILLTQGR--EAHNFQT 239
S I+ +QR GRTGR GR +IL+ +G EA+ + +
Sbjct: 246 PVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYWSS 285
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 78.0 bits (192), Expect = 8e-17
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 10/135 (7%)
Query: 113 LHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKA-----SMFVGQSSGVTQQEQKEI 167
L KG + +IF + + E+ L L A + V +SG +
Sbjct: 31 LEVIKGG--RHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDA 88
Query: 168 MKKFRAGEFNTLIATSV---GEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGRKRNGRC 224
+ G+F+++I + + + + + QR GRTGR + G
Sbjct: 89 LMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGRGKPGIY 148
Query: 225 VILLTQGREAHNFQT 239
+ R + F +
Sbjct: 149 RFVAPGERPSGMFDS 163
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 56.4 bits (135), Expect = 5e-10
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
K +LREILE H K+IIF + +++ + + ++S
Sbjct: 80 KIRKLREILERH--------RKDKIIIFTRH-------NELVYRISKVFLIPAITHRTS- 123
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
++E++EI++ FR G F ++++ V +EG+D+ + ++ + S + +QRLGR R
Sbjct: 124 --REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR 181
Query: 219 K-RNGRCVILLT 229
+ + +L
Sbjct: 182 PSKGKKEAVLYE 193
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 52.1 bits (124), Expect = 1e-08
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 151 MFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQK-----S 205
S + E+ EI++ R G+++ L+ ++ EGLDI E+ LV DA K S
Sbjct: 57 KVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS 116
Query: 206 PIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKIINNK 255
++Q +GR R NG ++ ++ + +++ N K
Sbjct: 117 ERSLIQTIGRAARNANGHVIMYADTITKSMEIAIQETKRRRAIQEEYNRK 166
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 50.7 bits (120), Expect = 3e-08
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 20/162 (12%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
K+ L ++ +S T+ +IF N R V E+ L+ + V A S
Sbjct: 14 KYECLTDLYDSI--------SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIY-----SD 60
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
+ QQE+ IMK+FR+G LI+T + G+D+ ++ LVI +D + + R+GR GR
Sbjct: 61 LPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 120
Query: 219 KRNGRCVILLTQGREAHN-------FQTSMQTCKSYVEKIIN 253
I + + T ++ S + ++N
Sbjct: 121 FGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN 162
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 49.6 bits (117), Expect = 5e-08
Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
+F L +L++ ++F + E+ +L+ + A
Sbjct: 16 RFEALCRLLKNK---------EFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLS--- 63
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
Q +++++++ F+ + LIAT V G+D+ +++ VI + ++P + R+GRTGR
Sbjct: 64 --QSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGR 121
Query: 219 KRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
I + RE + + K ++K+
Sbjct: 122 AGKKGKAISIINRREYKKLRYIERAMKLKIKKL 154
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 49.4 bits (117), Expect = 2e-07
Identities = 25/158 (15%), Positives = 44/158 (27%), Gaps = 29/158 (18%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
L ILE II+A EI++ LK G
Sbjct: 13 SISTLSSILEKLGT---------GGIIYARTGEEAEEIYESLK-----------NKFRIG 52
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIG-----EIDLVICFDAQKSPIKMVQRL 213
+ +K +KF GE + LI T+ L G I + +
Sbjct: 53 IVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRVTI 108
Query: 214 GRTGRKRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
+L R + + + +++++
Sbjct: 109 EDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEV 146
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 48.0 bits (113), Expect = 3e-07
Identities = 34/153 (22%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
KF L ++ ++ T+ +IF N + V + + ++ V +
Sbjct: 21 KFDTLCDLYDTL--------TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMP--- 69
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRTGR 218
Q+E++ IMK+FR+G LI+T V GLD+ ++ L+I +D + + R+GR+GR
Sbjct: 70 --QKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGR 127
Query: 219 KRNGRCVILLTQGREAHNFQTSMQTCKSYVEKI 251
I + + + Q + ++++
Sbjct: 128 YGRKGVAINFVKNDDIRILRDIEQYYSTQIDEM 160
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 46.6 bits (110), Expect = 4e-07
Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 17/124 (13%)
Query: 112 RLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKF 171
L KG + +IF + + E+ L L + +
Sbjct: 29 PLEVIKGG--RHLIFCHSKKKCDELAAKLVALGINA------------VAYYRGLDVSVI 74
Query: 172 RAGEFNTLIATSVGEEGLDIGE---IDLVICFDAQKSPIKMVQRLGRTGRKRNGRCVILL 228
++AT G ID + + QR GRTGR + G +
Sbjct: 75 PTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGRGKPGIYRFVA 134
Query: 229 TQGR 232
R
Sbjct: 135 PGER 138
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 46.1 bits (108), Expect = 3e-06
Identities = 26/162 (16%), Positives = 45/162 (27%), Gaps = 33/162 (20%)
Query: 95 WSHLKFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVG 154
+ I R H + KG K + F +I L+ V
Sbjct: 156 MDEEREIPERSWNSGHEWVTDFKG---KTVWFVPSIKAGNDIAACLRKNGKKVIQ----- 207
Query: 155 QSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIK------ 208
++++ K R +++ ++ T + E G + + VI P+
Sbjct: 208 ----LSRKTFDSEYIKTRTNDWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEE 262
Query: 209 --------------MVQRLGRTGRKRNGRCVILLTQGREAHN 236
QR GR GR + G N
Sbjct: 263 RVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGEPLEN 304
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 206
Score = 41.3 bits (96), Expect = 7e-05
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Query: 141 KPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDL-VIC 199
+ + ++Q+E+ +M +F G ++ L++T+V E G+D+ ++ VI
Sbjct: 56 YLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIE 115
Query: 200 FDAQKSPIKMVQRLGRTGRKRNGRCVILLTQGREAHNFQTSMQTC 244
+ ++ Q GR GR L+ +
Sbjct: 116 NPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFFT 160
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 35.7 bits (82), Expect = 0.006
Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 29/140 (20%)
Query: 122 KVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSGVTQQEQKEIMKKFRAGEFNTLIA 181
F + L+ V + ++ + + + + ++A
Sbjct: 38 PTAWFLPSIRAANVMAASLRKAGKSVVV---------LNRKTFEREYPTIKQKKPDFILA 88
Query: 182 TSVGEEGLDIGEIDLVICFDAQKSPIK-------------------MVQRLGRTGRKRNG 222
T + E G ++ ++ V+ P+ QR GR GR N
Sbjct: 89 TDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
Query: 223 RCVILLTQGREAHNFQTSMQ 242
+ N +
Sbjct: 148 DGDSYYYSEPTSENNAHHVC 167
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 33.3 bits (75), Expect = 0.028
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 163 EQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVIC-------FDAQKSPIKMVQRLGR 215
+++ + FR G ++AT G+++ +++ + + + Q GR
Sbjct: 108 QRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGR 167
Query: 216 TGRKRN---GRCVILLTQGREAHNFQ 238
GR G +I++ + +
Sbjct: 168 AGRPGMDERGEAIIIVGKRDREIAVK 193
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 32.6 bits (73), Expect = 0.075
Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 10/136 (7%)
Query: 99 KFIRLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLKPLEPMVKASMFVGQSSG 158
K + L IL ++K V++ +NY + + + G S
Sbjct: 102 KMLVLDYILAMTRTTTSDK-----VVLVSNYTQTLDLFEKLCRNR--RYLYVRLDGTMSI 154
Query: 159 VTQQEQKEIMKKFRAGEFNTLIATSVGEEGLDIGEIDLVICFDAQKSPIKMVQRLGRT-- 216
+ + E + EF ++++ G GL++ + ++ FD +P Q + R
Sbjct: 155 KKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWR 214
Query: 217 -GRKRNGRCVILLTQG 231
G+K+ LL+ G
Sbjct: 215 DGQKKTCYIYRLLSTG 230
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator
PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Length = 118
Score = 26.6 bits (58), Expect = 2.4
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 102 RLREILESHFRLHAEKGETTKVIIFANYRVVVAEIFDVLK 141
+R ++ S+ + + I+ + RV E+ + L+
Sbjct: 6 TVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLR 45
>d1qsaa2 d.2.1.6 (A:451-618) 70 kDa soluble lytic transglycosylase,
SLT70 {Escherichia coli [TaxId: 562]}
Length = 168
Score = 27.2 bits (59), Expect = 2.4
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 245 KSYVEKIINNKSIYANLAKNGPRMIPAHVTPR 276
+ YV+ ++ + Y + P ++ A R
Sbjct: 135 RGYVKNVLAYDAYYRYFMGDKPTLMSATEWGR 166
>d1vi0a2 a.121.1.1 (A:78-194) Hypothetical transcriptional regulator
YsiA {Bacillus subtilis [TaxId: 1423]}
Length = 117
Score = 26.2 bits (57), Expect = 4.1
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 102 RLREILESHFRLHAEKGETTKVIIFANYRV---VVAEIFDVLKPLEPMVKASMFVGQSSG 158
+L ++ HF L A V + + +I ++LK ++ + G SG
Sbjct: 5 KLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSG 64
Query: 159 V 159
Sbjct: 65 E 65
>d1pn5a1 a.77.1.5 (A:59-151) NALP1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 93
Score = 24.7 bits (54), Expect = 7.5
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 15/93 (16%)
Query: 35 LASALENLVTYGLRSFYNNLVEVSKEDGSCPILG---KDNDLQNLLQQLKPKLDINIMSS 91
LA LE L L+ F L + S + + L +
Sbjct: 9 LACYLEFLKKEELKEFQLLLANKAHSRSSSGETPAQPEKTSGMEVASYL-----VAQYGE 63
Query: 92 EYAW----SHLKFIRLREILESHFRLHAEKGET 120
+ AW + + LR + + G +
Sbjct: 64 QRAWDLALHTWEQMGLRSLCA---QAQEGAGHS 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.369
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,373,831
Number of extensions: 62608
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 25
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)