Query psy4154
Match_columns 346
No_of_seqs 224 out of 407
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 18:16:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 89.1 29 0.001 42.7 21.9 23 259-281 2030-2052(3245)
2 1l8d_A DNA double-strand break 81.2 18 0.00062 28.4 10.7 11 216-226 48-58 (112)
3 3cw1_L U1 small nuclear ribonu 77.8 1.3 4.4E-05 33.9 2.6 47 217-267 5-51 (77)
4 3cve_A Homer protein homolog 1 75.7 14 0.00049 27.7 7.8 51 261-311 11-61 (72)
5 3oja_B Anopheles plasmodium-re 74.0 46 0.0016 33.2 13.7 22 260-281 540-561 (597)
6 3cvf_A Homer-3, homer protein 72.6 18 0.00061 27.7 7.8 50 261-310 17-66 (79)
7 3onj_A T-snare VTI1; helix, HA 70.6 36 0.0012 26.5 10.8 86 109-203 5-91 (97)
8 2dfs_A Myosin-5A; myosin-V, in 70.0 1.3E+02 0.0044 33.2 16.9 48 151-199 927-974 (1080)
9 2d9n_A Cleavage and polyadenyl 67.9 3.2 0.00011 31.2 2.6 29 24-61 6-34 (77)
10 2e5s_A Otthump00000018578; ZF- 66.5 4.8 0.00017 31.8 3.6 16 26-41 18-33 (98)
11 3d2q_A Muscleblind-like protei 65.4 2.8 9.5E-05 31.0 1.8 25 26-60 4-30 (70)
12 3na7_A HP0958; flagellar bioge 65.3 79 0.0027 28.5 20.8 26 292-317 146-171 (256)
13 2fc6_A Nuclear, target of EGR1 65.1 1.3 4.5E-05 31.1 -0.0 26 27-61 19-45 (50)
14 2cqe_A KIAA1064 protein; CCCH 64.3 3.9 0.00013 32.3 2.6 23 27-59 12-35 (98)
15 3d2n_A Muscleblind-like protei 64.0 3.4 0.00012 31.8 2.2 15 52-66 57-71 (83)
16 2rhk_C Cleavage and polyadenyl 61.9 3.8 0.00013 30.5 2.1 28 24-60 12-39 (72)
17 2lw1_A ABC transporter ATP-bin 61.2 39 0.0013 25.8 7.9 24 176-199 54-77 (89)
18 2dfs_A Myosin-5A; myosin-V, in 59.8 83 0.0028 34.7 13.0 8 29-36 726-733 (1080)
19 1lq7_A Alpha3W; three helix bu 54.9 25 0.00085 25.0 5.1 36 298-333 27-62 (67)
20 2rpp_A Muscleblind-like protei 51.5 9.3 0.00032 29.8 2.7 16 25-40 14-29 (89)
21 3d2q_A Muscleblind-like protei 48.9 6.5 0.00022 28.9 1.4 25 28-62 42-66 (70)
22 4b6x_A AVRRPS4, avirulence pro 48.1 91 0.0031 23.9 8.7 54 148-201 25-78 (90)
23 1gp8_A Protein (scaffolding pr 47.0 42 0.0014 22.3 4.9 33 302-334 7-39 (40)
24 1lq7_A Alpha3W; three helix bu 45.7 46 0.0016 23.6 5.3 35 153-187 26-60 (67)
25 3cvf_A Homer-3, homer protein 45.3 69 0.0023 24.4 6.7 44 123-166 23-66 (79)
26 1vcs_A Vesicle transport throu 40.4 1.3E+02 0.0043 23.5 7.9 85 108-203 8-92 (102)
27 3cve_A Homer protein homolog 1 39.3 1.2E+02 0.004 22.7 7.8 48 123-170 17-64 (72)
28 1m1j_B Fibrinogen beta chain; 38.7 3.1E+02 0.011 27.3 12.8 85 115-200 102-190 (464)
29 3efg_A Protein SLYX homolog; x 38.4 63 0.0022 24.3 5.6 33 141-173 31-63 (78)
30 2h8b_A Insulin-like 3; insulin 38.1 7.2 0.00025 23.5 0.1 9 33-41 18-26 (26)
31 1gp8_A Protein (scaffolding pr 37.8 24 0.00083 23.4 2.7 30 159-188 8-37 (40)
32 4afl_A P29ING4, inhibitor of g 37.7 1.4E+02 0.0048 23.0 8.0 71 118-195 23-100 (104)
33 1fxk_C Protein (prefoldin); ar 34.4 1.8E+02 0.006 23.3 11.5 46 263-312 87-132 (133)
34 3pwf_A Rubrerythrin; non heme 34.1 92 0.0031 26.6 6.6 13 214-226 137-149 (170)
35 1fxk_C Protein (prefoldin); ar 33.8 1.4E+02 0.0047 23.9 7.5 45 119-167 87-131 (133)
36 2k48_A Nucleoprotein; viral pr 32.7 1.9E+02 0.0065 23.1 7.7 58 115-172 37-102 (107)
37 2k48_A Nucleoprotein; viral pr 31.3 2E+02 0.0069 23.0 8.7 49 271-319 56-105 (107)
38 3mq9_A Bone marrow stromal ant 31.2 2.6E+02 0.0089 26.8 10.3 34 249-282 382-415 (471)
39 2yru_A Steroid receptor RNA ac 30.8 1.3E+02 0.0043 24.4 6.6 25 162-186 62-86 (118)
40 2odv_A Plectin 1, HD1; plakin 30.6 2.9E+02 0.01 24.7 9.9 53 149-202 169-221 (235)
41 3efg_A Protein SLYX homolog; x 29.1 92 0.0031 23.4 5.1 51 269-319 12-65 (78)
42 1f5n_A Interferon-induced guan 28.4 4.7E+02 0.016 26.7 11.9 42 152-193 541-582 (592)
43 2lw1_A ABC transporter ATP-bin 27.1 2E+02 0.0069 21.6 9.0 62 253-315 18-82 (89)
44 3vkg_A Dynein heavy chain, cyt 26.6 1E+03 0.035 29.7 19.9 58 114-171 1900-1960(3245)
45 4dgw_A PRE-mRNA-splicing facto 26.4 89 0.003 30.7 5.8 65 217-284 294-360 (402)
46 2xzr_A Immunoglobulin-binding 26.1 2.4E+02 0.0084 22.3 12.8 57 116-172 23-82 (114)
47 3us6_A Histidine-containing ph 25.4 2.9E+02 0.0098 22.8 9.7 73 259-332 43-120 (153)
48 3pxg_A Negative regulator of g 25.3 98 0.0033 30.2 6.0 49 153-201 395-443 (468)
49 1yuz_A Nigerythrin; rubrythrin 25.1 1.9E+02 0.0065 25.2 7.3 67 155-227 117-183 (202)
50 3mq7_A Bone marrow stromal ant 24.6 2.5E+02 0.0087 22.9 7.2 19 181-199 88-106 (121)
51 1x0t_A Ribonuclease P protein 23.8 2.8E+02 0.0096 22.2 9.1 62 156-229 18-79 (120)
52 1skh_A Major prion protein 2; 23.6 12 0.00042 23.4 -0.6 22 35-56 5-26 (30)
53 2lf0_A Uncharacterized protein 22.7 2.5E+02 0.0085 23.0 6.8 46 153-198 11-56 (123)
54 2dq0_A Seryl-tRNA synthetase; 22.7 1.6E+02 0.0055 29.0 7.0 11 258-268 195-205 (455)
55 3u9g_A Zinc finger CCCH-type a 21.8 32 0.0011 31.3 1.5 31 25-60 86-116 (229)
56 3r8n_T 30S ribosomal protein S 21.8 1.4E+02 0.0049 22.8 5.0 34 300-333 21-54 (85)
57 2k3r_A Ribonuclease P protein 21.6 2.1E+02 0.007 23.2 6.3 60 158-229 15-74 (123)
58 2qyw_A Vesicle transport throu 21.6 2.9E+02 0.0098 21.4 11.0 82 109-200 19-100 (102)
59 1e52_A Excinuclease ABC subuni 21.5 1.8E+02 0.0063 20.9 5.3 37 157-193 22-58 (63)
60 1i84_S Smooth muscle myosin he 21.1 2.9E+02 0.01 30.4 9.3 179 112-337 877-1064(1184)
61 3htk_A Structural maintenance 21.1 2.1E+02 0.0071 19.6 7.4 52 259-314 7-58 (60)
62 2d9m_A Zinc finger CCCH-type d 20.9 25 0.00085 26.2 0.5 24 29-61 21-44 (69)
63 2zdi_C Prefoldin subunit alpha 20.9 3.4E+02 0.011 22.2 7.7 44 263-310 97-140 (151)
64 4fi5_A Nucleoprotein; structur 20.2 3.5E+02 0.012 21.9 9.0 53 271-323 43-96 (113)
65 3lay_A Zinc resistance-associa 20.1 4.2E+02 0.014 22.7 8.3 50 152-201 85-136 (175)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.14 E-value=29 Score=42.71 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhh
Q psy4154 259 MEHLQAFISDCDRRTELAKQRLL 281 (346)
Q Consensus 259 ~r~L~~~i~d~DRrI~~ak~RL~ 281 (346)
+..++..+.+++.+|..-++.++
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666655555554
No 2
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.19 E-value=18 Score=28.43 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=8.7
Q ss_pred cccccchhhhc
Q psy4154 216 RVCEVCSAYLG 226 (346)
Q Consensus 216 ~vCdVCga~L~ 226 (346)
.+|+|||.-+.
T Consensus 48 ~~CPvCgs~l~ 58 (112)
T 1l8d_A 48 GKCPVCGRELT 58 (112)
T ss_dssp EECTTTCCEEC
T ss_pred CCCCCCCCcCC
Confidence 58999997654
No 3
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=77.83 E-value=1.3 Score=33.93 Aligned_cols=47 Identities=23% Similarity=0.499 Sum_probs=29.2
Q ss_pred ccccchhhhcccCcchhhhcccCCccccchHHHHHHHHHHHHHHHHHHHHh
Q psy4154 217 VCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHLQAFIS 267 (346)
Q Consensus 217 vCdVCga~L~~~d~~~R~~dH~~gK~H~g~~~lR~~~~El~~~r~L~~~i~ 267 (346)
-|+.|..||.- |+..=...|..|+.|.+ .++..|..+.. ...+.+|+
T Consensus 5 yCdYCd~~lt~-Ds~s~Rk~H~~G~kH~~--nv~~yy~~~~~-~~~~~~id 51 (77)
T 3cw1_L 5 YCDYCDTYLTH-DSPSVRKTHCSGRKHKE--NVKDYYCKWME-EQAQSLID 51 (77)
T ss_pred ccccCCceecC-CCHHHHHHHHccHHHHH--HHHHHHHHHHH-HHHHHHHH
Confidence 59999999863 33332358999999987 55555554331 23344444
No 4
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=75.74 E-value=14 Score=27.75 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=39.0
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy4154 261 HLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAK 311 (346)
Q Consensus 261 ~L~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~ekI~~ll~e 311 (346)
-++.=..+++.+|+..+.+|+.+..+......+...-+..|+.||.+|..=
T Consensus 11 ~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 11 EVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344445678889999999999887776666667777788899999887653
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.97 E-value=46 Score=33.18 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=10.3
Q ss_pred HHHHHHHhhhHHHHHHHHHhhh
Q psy4154 260 EHLQAFISDCDRRTELAKQRLL 281 (346)
Q Consensus 260 r~L~~~i~d~DRrI~~ak~RL~ 281 (346)
..++.=+..++++++..++++.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHH
Confidence 3334444445555555544443
No 6
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.63 E-value=18 Score=27.67 Aligned_cols=50 Identities=14% Similarity=0.082 Sum_probs=37.8
Q ss_pred HHHHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy4154 261 HLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLA 310 (346)
Q Consensus 261 ~L~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~ekI~~ll~ 310 (346)
-++.=..+++.+|+..+.+|+++..+......+...-+..|+.||.+|..
T Consensus 17 ~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 17 DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33444566788999999999988776666666777778888988887754
No 7
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=70.56 E-value=36 Score=26.53 Aligned_cols=86 Identities=9% Similarity=0.081 Sum_probs=52.3
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy4154 109 YYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIE 188 (346)
Q Consensus 109 ~yE~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e 188 (346)
+||.+|-..+ .++-++|.+.. ..+.++....+......+++..+-|..|--++..+| |....--.++.++.
T Consensus 5 ~YE~df~~~~----~~i~~~l~~~~---~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~~klr 75 (97)
T 3onj_A 5 SYESDFKTTL----EQAKASLAEAP---SQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYKAKLR 75 (97)
T ss_dssp HHHHHHHHHH----HHHHHHHHHGG---GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHh---ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHH
Confidence 6888875544 44545553321 111122223344556677777777777777777776 44555567888888
Q ss_pred HHHHHHHH-HHHhhcc
Q psy4154 189 DLRKKKAE-AEDTYRN 203 (346)
Q Consensus 189 ~lka~~de-L~~~~rn 203 (346)
..+..++. |...++.
T Consensus 76 ~Yk~dl~~~lk~~lk~ 91 (97)
T 3onj_A 76 EWKKTIQSDIKRPLQS 91 (97)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 88888887 7665543
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=69.96 E-value=1.3e+02 Score=33.23 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 151 ANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAED 199 (346)
Q Consensus 151 ~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~ 199 (346)
..+|.+|+.++.+..++...|-++...- ..++..++..|+..+++|+.
T Consensus 927 E~kl~eLq~rL~~~e~~n~~L~~~~~~~-~~~~~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNL-EITYSTETEKLRSDVERLRM 974 (1080)
T ss_dssp ------------------------CHHH-HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444433211 13344556666555555544
No 9
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.88 E-value=3.2 Score=31.20 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=19.2
Q ss_pred CCCCcchhhhhhcCCChhhhhhhCccCCCCCCccccHH
Q psy4154 24 KFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLA 61 (346)
Q Consensus 24 ~~~D~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~~ 61 (346)
.++-..||++||-|.|. +.| .|+..|+..
T Consensus 6 ~~~k~~~C~~fl~G~C~-------~G~--~C~fsH~~~ 34 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCK-------KGD--QCEFLHEYD 34 (77)
T ss_dssp SCCTTSBCHHHHTTCCS-------CTT--SSSSBCSCC
T ss_pred CCCcceeCHhHccCcCC-------CCC--CCCCccccc
Confidence 45556788888888882 222 577777754
No 10
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.49 E-value=4.8 Score=31.84 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=11.1
Q ss_pred CCcchhhhhhcCCChh
Q psy4154 26 FDSKVCKSFLLTCCPH 41 (346)
Q Consensus 26 ~D~~VCk~fL~g~CPh 41 (346)
+--.||++||-|.|..
T Consensus 18 ~k~~VCr~FlrG~C~r 33 (98)
T 2e5s_A 18 DKLEVCREFQRGNCAR 33 (98)
T ss_dssp SEEEBCSHHHHTCCSS
T ss_pred hhhhhhHHHhcCcCCC
Confidence 3347888888888853
No 11
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=65.37 E-value=2.8 Score=30.96 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=18.7
Q ss_pred CCcchhhhhhcCCChhhhhhhCccCCC--CCCccccH
Q psy4154 26 FDSKVCKSFLLTCCPHEILSSTRMDLG--ECPKIHDL 60 (346)
Q Consensus 26 ~D~~VCk~fL~g~CPhdLF~nTk~dlG--~C~k~H~~ 60 (346)
.--.||+.||-|.| .-| .|+..|+.
T Consensus 4 ~k~~vC~~f~~G~C----------~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 4 DRLEVCREYQRGNC----------NRGENDCRFAHPA 30 (70)
T ss_dssp CEEEBCHHHHTTCC----------SSCTTTCSSBCCC
T ss_pred ccchhCHHHhcCCC----------CCCCCCCCCccCc
Confidence 33469999999999 334 58888864
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.30 E-value=79 Score=28.52 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4154 292 AEKANAVHQLAEDIGKKLAKAEELGA 317 (346)
Q Consensus 292 ~~~~~~i~~l~ekI~~ll~eaE~LGe 317 (346)
.+....+..++..+..+..+.+.|..
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~ 171 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVE 171 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666777777666666644
No 13
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=65.12 E-value=1.3 Score=31.10 Aligned_cols=26 Identities=31% Similarity=0.864 Sum_probs=19.5
Q ss_pred Ccchhhhhhc-CCChhhhhhhCccCCCCCCccccHH
Q psy4154 27 DSKVCKSFLL-TCCPHEILSSTRMDLGECPKIHDLA 61 (346)
Q Consensus 27 D~~VCk~fL~-g~CPhdLF~nTk~dlG~C~k~H~~~ 61 (346)
--.||+-|=+ |+||+.+ .||..||..
T Consensus 19 ~~~iC~~FSayGwCp~G~---------~Cp~SHDiD 45 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGP---------QCPQSHDIS 45 (50)
T ss_dssp CSCBCSHHHHTCCCTTGG---------GCSSBCCCC
T ss_pred ccchhhhccccccCCCCC---------CCCccccCC
Confidence 3468988866 9999764 599999754
No 14
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=64.26 E-value=3.9 Score=32.32 Aligned_cols=23 Identities=26% Similarity=0.859 Sum_probs=15.0
Q ss_pred CcchhhhhhcCCChhhhhhhCccCCC-CCCcccc
Q psy4154 27 DSKVCKSFLLTCCPHEILSSTRMDLG-ECPKIHD 59 (346)
Q Consensus 27 D~~VCk~fL~g~CPhdLF~nTk~dlG-~C~k~H~ 59 (346)
-..||++|+-|.|.+ | .|+..|+
T Consensus 12 k~~lC~~f~~G~C~~----------G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCAR----------AENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSC----------STTCSSBSS
T ss_pred CCccCcccccCcCCC----------CCCCCCCCC
Confidence 445777777777754 3 3666666
No 15
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=63.99 E-value=3.4 Score=31.78 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=8.3
Q ss_pred CCCCccccHHHHHHH
Q psy4154 52 GECPKIHDLALRADY 66 (346)
Q Consensus 52 G~C~k~H~~~lk~~y 66 (346)
|.|+..|.+..-..|
T Consensus 57 ~~C~y~H~~~~l~~~ 71 (83)
T 3d2n_A 57 ENCKYLHPPPHLKTQ 71 (83)
T ss_dssp SSCSSCCCCHHHHHH
T ss_pred CCcceeCChHHHHHH
Confidence 457777766444433
No 16
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=61.92 E-value=3.8 Score=30.50 Aligned_cols=28 Identities=29% Similarity=0.543 Sum_probs=19.9
Q ss_pred CCCCcchhhhhhcCCChhhhhhhCccCCCCCCccccH
Q psy4154 24 KFFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDL 60 (346)
Q Consensus 24 ~~~D~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~ 60 (346)
.+.-..||++||-|.|.. .| .|+..|+.
T Consensus 12 ~~~k~~vCk~fl~G~C~~-------G~--~C~fsH~~ 39 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKK-------GD--QCEFLHEY 39 (72)
T ss_dssp SCCCCSBCHHHHTTCCCC-------GG--GSSSBCSC
T ss_pred CCCcCeeCHHHhcCCCCC-------CC--CCCCcccc
Confidence 455677999999999942 22 37777764
No 17
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.22 E-value=39 Score=25.75 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 176 FVEESLKLMTEIEDLRKKKAEAED 199 (346)
Q Consensus 176 ~VdeA~~~~~~~e~lka~~deL~~ 199 (346)
+.+..+.++.+.+.+..++++++.
T Consensus 54 d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 54 PHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555543
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.76 E-value=83 Score=34.72 Aligned_cols=8 Identities=38% Similarity=0.766 Sum_probs=3.6
Q ss_pred chhhhhhc
Q psy4154 29 KVCKSFLL 36 (346)
Q Consensus 29 ~VCk~fL~ 36 (346)
+.|...|-
T Consensus 726 ~~~~~il~ 733 (1080)
T 2dfs_A 726 QTCKNVLE 733 (1080)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 34544443
No 19
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=54.94 E-value=25 Score=25.03 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q psy4154 298 VHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTS 333 (346)
Q Consensus 298 i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~~e~ 333 (346)
|.+|..+-..+-.++|+||--|+|......+.+++.
T Consensus 27 ieelkkkweelkkkieelggggevkkveeevkklee 62 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEE 62 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 466777888889999999999999888887777664
No 20
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=51.52 E-value=9.3 Score=29.76 Aligned_cols=16 Identities=25% Similarity=0.750 Sum_probs=11.7
Q ss_pred CCCcchhhhhhcCCCh
Q psy4154 25 FFDSKVCKSFLLTCCP 40 (346)
Q Consensus 25 ~~D~~VCk~fL~g~CP 40 (346)
|.--.||+.||-|.|.
T Consensus 14 ~~~~~VCrdFlrG~C~ 29 (89)
T 2rpp_A 14 WLTLEVCRQFQRGTCS 29 (89)
T ss_dssp SSEECBCHHHHHTCCC
T ss_pred cchhhhchHHhcCCCC
Confidence 4444589999998884
No 21
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=48.90 E-value=6.5 Score=28.90 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=20.1
Q ss_pred cchhhhhhcCCChhhhhhhCccCCCCCCccccHHH
Q psy4154 28 SKVCKSFLLTCCPHEILSSTRMDLGECPKIHDLAL 62 (346)
Q Consensus 28 ~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~~l 62 (346)
-.||++||=|.|+ -|.|+..|.+..
T Consensus 42 ~~vC~~flkG~C~----------r~~C~y~H~~~~ 66 (70)
T 3d2q_A 42 VTVCMDYIKGRCS----------REKCKYFHPPAH 66 (70)
T ss_dssp EEBCHHHHTTCCC----------CTTCCSBCCCHH
T ss_pred ceeccccCcCCCC----------CCCcCeeCCHHH
Confidence 4789999999994 357999998753
No 22
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=48.08 E-value=91 Score=23.91 Aligned_cols=54 Identities=9% Similarity=0.068 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4154 148 AEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTY 201 (346)
Q Consensus 148 ~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~~~ 201 (346)
++..+.|..-+..|+.+..+.+..-++|+-.+--.--..++..++-+.+||+..
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~ 78 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRF 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 355677888888899999999999999998887777777788888888888754
No 23
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=46.95 E-value=42 Score=22.26 Aligned_cols=33 Identities=18% Similarity=0.125 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhh
Q psy4154 302 AEDIGKKLAKAEELGAEGFVEESLKLMTEQTSS 334 (346)
Q Consensus 302 ~ekI~~ll~eaE~LGeeG~VdeA~~l~~~~e~l 334 (346)
...|..+-+++..+-.+|+++.+-.|-.+++.|
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 456888889999999999999999999888765
No 24
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=45.69 E-value=46 Score=23.64 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q psy4154 153 AVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEI 187 (346)
Q Consensus 153 ~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~ 187 (346)
.|.+|..+-.++-+++|+||--|.|........++
T Consensus 26 rieelkkkweelkkkieelggggevkkveeevkkl 60 (67)
T 1lq7_A 26 RIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKL 60 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 45567777788888889999888886655444433
No 25
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.30 E-value=69 Score=24.40 Aligned_cols=44 Identities=14% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 123 SDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLA 166 (346)
Q Consensus 123 ~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~ 166 (346)
.+++.+|+..+.+|+....+......+...-+..|+.+|.++..
T Consensus 23 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 23 AELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSE 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45678888888888877655443334455556667777776654
No 26
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=40.42 E-value=1.3e+02 Score=23.50 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=46.4
Q ss_pred chhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q psy4154 108 YYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEI 187 (346)
Q Consensus 108 ~~yE~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~ 187 (346)
.+||.+|-... .++.++|.+.. .+ ..++....+.+....|++.++-|..|--++..+. ...--.++.++
T Consensus 8 e~YE~df~~l~----~~i~~kl~~i~-~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p----~~~R~~~~~kl 76 (102)
T 1vcs_A 8 EGYEQDFAVLT----AEITSKIARVP-RL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIP----PQSRGMYSNRM 76 (102)
T ss_dssp CCSHHHHHHHH----HHHHHHHHHGG-GS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC----TTTHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHhh-cc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHhHHHHHHHH
Confidence 37999886655 44555554321 11 1111122233444555555555555555555442 22334677888
Q ss_pred HHHHHHHHHHHHhhcc
Q psy4154 188 EDLRKKKAEAEDTYRN 203 (346)
Q Consensus 188 e~lka~~deL~~~~rn 203 (346)
...+..++.|...++.
T Consensus 77 r~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 77 RSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888776643
No 27
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=39.29 E-value=1.2e+02 Score=22.67 Aligned_cols=48 Identities=17% Similarity=0.077 Sum_probs=31.5
Q ss_pred HHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 123 SDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEE 170 (346)
Q Consensus 123 ~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~aE~ 170 (346)
.+++.+|+..+.+|+....+......+...-+..|+.+|.++..--..
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~ 64 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDN 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456788888888888776554433345555666777777777654333
No 28
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.69 E-value=3.1e+02 Score=27.34 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH-HHHHHH
Q psy4154 115 MEHLQAFISDCDRRTELAKQRLLETQEVLS---AEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLM-TEIEDL 190 (346)
Q Consensus 115 ~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~---~~~~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~-~~~e~l 190 (346)
++.|+..+.++..+...+...+...+.... ..+......|.+++..|.+....+.+.- ...+...+.++ ..++.+
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~-~~~~~~~i~~L~~~~~~l 180 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNL-DNNIPSSLRVLRAVIDSL 180 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHH
Confidence 667777777777766666655433222211 1122223344455555554444444332 22233333332 345556
Q ss_pred HHHHHHHHHh
Q psy4154 191 RKKKAEAEDT 200 (346)
Q Consensus 191 ka~~deL~~~ 200 (346)
+..+..|+..
T Consensus 181 ~~ki~~l~~~ 190 (464)
T 1m1j_B 181 HKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 29
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=38.43 E-value=63 Score=24.32 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4154 141 EVLSAEVAEKANAVHQLAEDIGKKLAKAEELGA 173 (346)
Q Consensus 141 ~~~~~~~~~~~~~i~~l~~~I~~~l~~aE~LGe 173 (346)
++++..+.+....|+.|..++..+..+...+..
T Consensus 31 eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 31 TELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444555556666666666666666555543
No 30
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=38.14 E-value=7.2 Score=23.46 Aligned_cols=9 Identities=56% Similarity=0.799 Sum_probs=7.3
Q ss_pred hhhcCCChh
Q psy4154 33 SFLLTCCPH 41 (346)
Q Consensus 33 ~fL~g~CPh 41 (346)
--|+++|||
T Consensus 18 QDLL~lCPh 26 (26)
T 2h8b_A 18 QDLLTLCPY 26 (26)
T ss_dssp HHHHTTCCC
T ss_pred HHHHhhCCC
Confidence 458899998
No 31
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=37.84 E-value=24 Score=23.39 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy4154 159 EDIGKKLAKAEELGAEGFVEESLKLMTEIE 188 (346)
Q Consensus 159 ~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e 188 (346)
..|..+-+++.....+|+++.+-.+-.+++
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~Le~QL~ 37 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKLKAKLK 37 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 456777788889999999998866555544
No 32
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=37.71 E-value=1.4e+02 Score=23.05 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=44.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q psy4154 118 LQAFISDCDRRTELAKQRLLETQE-------VLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDL 190 (346)
Q Consensus 118 L~~~I~dcdRkI~~ak~RLe~~~~-------~~~~~~~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~l 190 (346)
.-..|++.|.+.......++..-. ..++. .+...+ .+|.+.+.++..+|.+ +|.-|..+...|+.-
T Consensus 23 ~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~r~~~l-~~I~~~~~~~~~l~dE-Kv~lA~~~~dlvdkh 95 (104)
T 4afl_A 23 NFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSE-----EKLALL-KQIQEAYGKCKEFGDD-KVQLAMQTYEMVDKH 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHH-----HHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChh-----hhHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 335567777777666666644221 11111 122334 7899999999999887 677787777777766
Q ss_pred HHHHH
Q psy4154 191 RKKKA 195 (346)
Q Consensus 191 ka~~d 195 (346)
-..+|
T Consensus 96 irrLD 100 (104)
T 4afl_A 96 IRRLD 100 (104)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 33
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=34.45 E-value=1.8e+02 Score=23.26 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=25.7
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 263 QAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKA 312 (346)
Q Consensus 263 ~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~ekI~~ll~ea 312 (346)
..-+.-+++||.....+++.... ....+...+..+.+.|..+++++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~----~l~~l~~~i~~~~~~l~~~~~~~ 132 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGE----NLRAITDIMMKLSPQAEELLAAV 132 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555566788777777754321 12344455555666666655543
No 34
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.06 E-value=92 Score=26.63 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=9.7
Q ss_pred cccccccchhhhc
Q psy4154 214 KLRVCEVCSAYLG 226 (346)
Q Consensus 214 k~~vCdVCga~L~ 226 (346)
...+|.|||+.-.
T Consensus 137 ~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 137 KVYICPICGYTAV 149 (170)
T ss_dssp CEEECTTTCCEEE
T ss_pred CeeEeCCCCCeeC
Confidence 3457999998755
No 35
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.83 E-value=1.4e+02 Score=23.90 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 119 QAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAK 167 (346)
Q Consensus 119 ~~~I~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~ 167 (346)
+.-+..+++||.....+++..... .......+..+...|.+++..
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~----l~~l~~~i~~~~~~l~~~~~~ 131 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGEN----LRAITDIMMKLSPQAEELLAA 131 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhc
Confidence 344556677777777776544332 233445556666666666544
No 36
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=32.67 E-value=1.9e+02 Score=23.13 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhh-------hhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4154 115 MEHLQAFISDCDRRTELAKQRLLE-------TQEVLSAE-VAEKANAVHQLAEDIGKKLAKAEELG 172 (346)
Q Consensus 115 ~~~L~~~I~dcdRkI~~ak~RLe~-------~~~~~~~~-~~~~~~~i~~l~~~I~~~l~~aE~LG 172 (346)
+..|+.-|...+.....|..+|.. .+.+++.. .......+..|+.+|.++-...-.+.
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556666667777754 33333322 13344566677777776655544443
No 37
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.33 E-value=2e+02 Score=22.99 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhhhhhhhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4154 271 RRTELAKQRLLETQEVLSAE-VAEKANAVHQLAEDIGKKLAKAEELGAEG 319 (346)
Q Consensus 271 RrI~~ak~RL~~t~ee~~~~-~~~~~~~i~~l~ekI~~ll~eaE~LGeeG 319 (346)
.|...|.+-.+..|.+.... .......+..|+.||+.+-...-.+...|
T Consensus 56 QKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va~g 105 (107)
T 2k48_A 56 QKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVAAQ 105 (107)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555566666553 35666778889999998887776665544
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.25 E-value=2.6e+02 Score=26.82 Aligned_cols=34 Identities=12% Similarity=0.080 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q psy4154 249 IREKLAELQAMEHLQAFISDCDRRTELAKQRLLE 282 (346)
Q Consensus 249 lR~~~~El~~~r~L~~~i~d~DRrI~~ak~RL~~ 282 (346)
+...+.+......+......+.|+|.+.++.|.+
T Consensus 382 i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 415 (471)
T 3mq9_A 382 ITAARDGLRAVMEARNVTHLLQQELTEAQKGFQD 415 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHH
Confidence 4444555555556666667777778777777764
No 39
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.85 E-value=1.3e+02 Score=24.42 Aligned_cols=25 Identities=8% Similarity=-0.081 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHH
Q psy4154 162 GKKLAKAEELGAEGFVEESLKLMTE 186 (346)
Q Consensus 162 ~~~l~~aE~LGeeG~VdeA~~~~~~ 186 (346)
-..+.++-..-..|+.+.|.++...
T Consensus 62 ~~~L~~l~~al~~~dy~~A~~ih~~ 86 (118)
T 2yru_A 62 KKRMALLVQELLHHQWDAADDIHRS 86 (118)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444455567888888765543
No 40
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=30.63 E-value=2.9e+02 Score=24.66 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy4154 149 EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYR 202 (346)
Q Consensus 149 ~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~~~r 202 (346)
+....|..+++.|..+...+++|- +|+..+|-.+...+..+....+.|...++
T Consensus 169 ~ie~dL~~~e~~i~~l~~~a~~L~-~~~y~~a~~i~~r~~~l~~~w~~L~~~~~ 221 (235)
T 2odv_A 169 EVERDLDKADSMIRLLFNDVQTLK-DGRHPQGEQMYRRVYRLHKRLVAIRTEYN 221 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889998888888884 67788888899999999988888876553
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.13 E-value=92 Score=23.41 Aligned_cols=51 Identities=20% Similarity=0.053 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhhhh---hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy4154 269 CDRRTELAKQRLLE---TQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEG 319 (346)
Q Consensus 269 ~DRrI~~ak~RL~~---t~ee~~~~~~~~~~~i~~l~ekI~~ll~eaE~LGeeG 319 (346)
++.||..=..||+. |-++.+.........|+.|..++..|..+...+...|
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~~~ 65 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRSTL 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444444444443 2233344445666777778888888877777666543
No 42
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.43 E-value=4.7e+02 Score=26.66 Aligned_cols=42 Identities=33% Similarity=0.471 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy4154 152 NAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKK 193 (346)
Q Consensus 152 ~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~ 193 (346)
..+.+.+..|+.++++-+.|-.+|--.+|..+-.+++.|+..
T Consensus 541 ~~~~e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 541 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667777888888888888899877777777777766544
No 43
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.07 E-value=2e+02 Score=21.62 Aligned_cols=62 Identities=10% Similarity=0.200 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhhh---hhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 253 LAELQAMEHLQAFISDCDRRTELAKQRLLETQEV---LSAEVAEKANAVHQLAEDIGKKLAKAEEL 315 (346)
Q Consensus 253 ~~El~~~r~L~~~i~d~DRrI~~ak~RL~~t~ee---~~~~~~~~~~~i~~l~ekI~~ll~eaE~L 315 (346)
|.+-+.+..|..-|..++.+|..-...|.. |.- ..........++..+...+..++.+=++|
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~lad-p~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVAD-ASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555667778888888888888888863 321 11224456667777777777777766655
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.55 E-value=1e+03 Score=29.67 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 114 AMEHLQAFISDCDRRTELAKQRLLETQEVL---SAEVAEKANAVHQLAEDIGKKLAKAEEL 171 (346)
Q Consensus 114 ~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~---~~~~~~~~~~i~~l~~~I~~~l~~aE~L 171 (346)
++.....++..=...|...+.||+..-..+ ...+....+++...+.++.++.++++++
T Consensus 1900 li~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A 1900 FINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555555554432222 1223344455555555555555555544
No 45
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=26.40 E-value=89 Score=30.68 Aligned_cols=65 Identities=20% Similarity=0.353 Sum_probs=34.8
Q ss_pred ccccchhhhcccCcchhhhcccCCccccchHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHhhhhhh
Q psy4154 217 VCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLA--ELQAMEHLQAFISDCDRRTELAKQRLLETQ 284 (346)
Q Consensus 217 vCdVCga~L~~~d~~~R~~dH~~gK~H~g~~~lR~~~~--El~~~r~L~~~i~d~DRrI~~ak~RL~~t~ 284 (346)
-|..|.-. |.+..-...|+.||-|..=..-+.... |....+.++-+-...+..+....+|.+.|-
T Consensus 294 ~C~~c~K~---Fs~~~v~~~hL~GKkh~K~~~~~k~iA~~E~~I~~l~~~L~~~~~~Tk~nVERKqa~T~ 360 (402)
T 4dgw_A 294 YCPFCSRW---FKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTA 360 (402)
T ss_dssp CBTTTTBC---BSSHHHHHTTSSSHHHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCH
T ss_pred eehhhhhh---hccccccHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 47777655 345555689999998864221112222 333344444444444555555555555543
No 46
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=26.11 E-value=2.4e+02 Score=22.27 Aligned_cols=57 Identities=11% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4154 116 EHLQAFISDCDRRTELAKQRLLETQEVLSAEV---AEKANAVHQLAEDIGKKLAKAEELG 172 (346)
Q Consensus 116 ~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~---~~~~~~i~~l~~~I~~~l~~aE~LG 172 (346)
..+...|.-+|++|.++.+-++..+..+.+.+ ++....+...+.+|++..++..++.
T Consensus 23 ~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~a 82 (114)
T 2xzr_A 23 ARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIE 82 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34567788889999888888876555443222 3445677888888888887777664
No 47
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.42 E-value=2.9e+02 Score=22.84 Aligned_cols=73 Identities=8% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHH-----HHHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q psy4154 259 MEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLA-----EDIGKKLAKAEELGAEGFVEESLKLMTEQT 332 (346)
Q Consensus 259 ~r~L~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~-----ekI~~ll~eaE~LGeeG~VdeA~~l~~~~e 332 (346)
...+..|+.+..+.|..-+.-++..+..... .....-.|..-. .++..+-.++|.++..|+.+.+..++.++.
T Consensus 43 ~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~-l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~ 120 (153)
T 3us6_A 43 FEVVSLFFDDSERILKDLSFAVDQQSIDFKK-VDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCHHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3567788888888887766655432111111 222223332222 567788889999999999998888777665
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.35 E-value=98 Score=30.22 Aligned_cols=49 Identities=10% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy4154 153 AVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTY 201 (346)
Q Consensus 153 ~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~~~ 201 (346)
.|.++..+|..+..+.+.+...++.+.|..+..+.+.++.++++++...
T Consensus 395 ~i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (468)
T 3pxg_A 395 NLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443 (468)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777788887777888888999999999999999999999887643
No 49
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.12 E-value=1.9e+02 Score=25.23 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhcccccccchhhhcc
Q psy4154 155 HQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGI 227 (346)
Q Consensus 155 ~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~ 227 (346)
.+.++.+.++.+.|++. |+.+-|..+-.-++.-+..-+.+.....+.... ......+|.|||+...+
T Consensus 117 ~E~t~my~~~a~~A~eE---gd~~~a~~f~~i~~~E~~H~~~~~~ll~~l~~~---~~~~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 117 YETSDMYPAFIRKAQEE---GNSKAVHVFTRAKLAESVHAERYLAAYNDIDAP---DDDKFHLCPICGYIHKG 183 (202)
T ss_dssp HHHHTHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC---CSCCEEECSSSCCEEES
T ss_pred HHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEECCCCCEEcC
Confidence 34455566666555554 555444433232222222222233333332211 11245799999987654
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.57 E-value=2.5e+02 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy4154 181 LKLMTEIEDLRKKKAEAED 199 (346)
Q Consensus 181 ~~~~~~~e~lka~~deL~~ 199 (346)
+.+.++++.||..-..+-.
T Consensus 88 q~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 88 QDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchhhhh
Confidence 4455667777766655543
No 51
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=23.84 E-value=2.8e+02 Score=22.18 Aligned_cols=62 Identities=21% Similarity=0.261 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhcccccccchhhhcccC
Q psy4154 156 QLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHD 229 (346)
Q Consensus 156 ~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~~d 229 (346)
...+.|+-|.+-|..+ ..+..+-|...+..+..+... .+-..+ ...+...|.-||.+|+-+-
T Consensus 18 ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k-------~~irlp----~~~KR~~Ck~C~s~LiPG~ 79 (120)
T 1x0t_A 18 IAIERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKK-------AKVKIP----RKWKRRYCKRCHTFLIPGV 79 (120)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH-------HTCCCC----TTTTTSBCTTTCCBCCBTT
T ss_pred HHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-------hccCCC----HHHHHHhccCCCCEeECCC
Confidence 3466888888888888 567788787777766544322 221222 2346689999999999554
No 52
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=23.55 E-value=12 Score=23.41 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=20.1
Q ss_pred hcCCChhhhhhhCccCCCCCCc
Q psy4154 35 LLTCCPHEILSSTRMDLGECPK 56 (346)
Q Consensus 35 L~g~CPhdLF~nTk~dlG~C~k 56 (346)
.+||+-.-||.-|=+|+|-|.|
T Consensus 5 ~~~cwilvLfva~wsdvglcKK 26 (30)
T 1skh_A 5 KIGSWILVLFVAMWSDVGLCKK 26 (30)
T ss_dssp TTTTHHHHHHHHHHHHHTTSSS
T ss_pred cccHHHHHHHHHHHhHHHHhhc
Confidence 4788999999999999999987
No 53
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=22.74 E-value=2.5e+02 Score=22.96 Aligned_cols=46 Identities=13% Similarity=0.169 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 153 AVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAE 198 (346)
Q Consensus 153 ~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~ 198 (346)
+|..|+.+++..-.+...+-..|+.+---.+..+++.|.+++..|.
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444443
No 54
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.68 E-value=1.6e+02 Score=29.04 Aligned_cols=11 Identities=27% Similarity=0.078 Sum_probs=5.6
Q ss_pred HHHHHHHHHhh
Q psy4154 258 AMEHLQAFISD 268 (346)
Q Consensus 258 ~~r~L~~~i~d 268 (346)
..+.|..++.+
T Consensus 195 l~~aL~~~~~~ 205 (455)
T 2dq0_A 195 LDLALIRFALD 205 (455)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555554
No 55
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=21.82 E-value=32 Score=31.32 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=20.3
Q ss_pred CCCcchhhhhhcCCChhhhhhhCccCCCCCCccccH
Q psy4154 25 FFDSKVCKSFLLTCCPHEILSSTRMDLGECPKIHDL 60 (346)
Q Consensus 25 ~~D~~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~ 60 (346)
-.+=-.||+||.|-|++... .-..|...||-
T Consensus 86 C~~LHLCK~~l~G~C~~~~~-----~~~~Ck~SHdi 116 (229)
T 3u9g_A 86 CDSLHLCKLNLLGRCHYAQS-----QRNLCKYSHDV 116 (229)
T ss_dssp CCSBCCCHHHHTTCCGGGTC-----CSSCCSSCSCT
T ss_pred ccceeechhhhcCcCCcccC-----CCCCccccccc
Confidence 34445799999999954321 12568888864
No 56
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=21.77 E-value=1.4e+02 Score=22.82 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhh
Q psy4154 300 QLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTS 333 (346)
Q Consensus 300 ~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~~e~ 333 (346)
.+-+.+...+.+++.+.+.|+.++|+.++..+..
T Consensus 21 ~~kS~~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~ 54 (85)
T 3r8n_T 21 SRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQP 54 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788888999999999999999998865543
No 57
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=21.60 E-value=2.1e+02 Score=23.17 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhcccccccchhhhcccC
Q psy4154 158 AEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHD 229 (346)
Q Consensus 158 ~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~~d 229 (346)
-+.|+-|.+-|..+ ..++.+-|...+..+..+.. ..+-..+ ...+...|.-|+.+|+-+-
T Consensus 15 ~~Ri~~L~~~A~~~-~~~~p~LSr~Y~~~~~~Is~-------K~~irlp----~~~KR~~Ck~C~s~LIPG~ 74 (123)
T 2k3r_A 15 KERIDILFSLAERV-FPYSPELAKRYVELALLVQQ-------KAKVKIP----RKWKRRYCKKCHAFLVPGI 74 (123)
T ss_dssp CHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHH-------HHTCCCS----STTTTSBCTTTCCBCCBTT
T ss_pred HHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHH-------HhccCCC----HHHHHHhccCCCCEeECCC
Confidence 45677777777777 45566666666665543322 1222222 2346689999999999554
No 58
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.55 E-value=2.9e+02 Score=21.43 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q psy4154 109 YYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIE 188 (346)
Q Consensus 109 ~yE~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~~~~~~~~~~i~~l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e 188 (346)
+||.+|-..+ .++.++|.+...-. ..++....+.+....|++.++-|..|--++..+ ....-..+..++.
T Consensus 19 ~YE~df~~l~----~~i~~kl~~i~~~~--~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~----p~s~R~~~~~klr 88 (102)
T 2qyw_A 19 KLHEIFRGLL----EDLQGVPERLLGTA--GTEEKKKLVRDFDEKQQEANETLAEMEEELRYA----PLTFRNPMMSKLR 88 (102)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHTCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHhcccC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 7888876655 44455554321000 111111223333444555555555554444444 2334456777777
Q ss_pred HHHHHHHHHHHh
Q psy4154 189 DLRKKKAEAEDT 200 (346)
Q Consensus 189 ~lka~~deL~~~ 200 (346)
..|..++.|...
T Consensus 89 ~Yk~dL~~lk~e 100 (102)
T 2qyw_A 89 NYRKDLAKLHRE 100 (102)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 777777766554
No 59
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=21.52 E-value=1.8e+02 Score=20.91 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q psy4154 157 LAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKK 193 (346)
Q Consensus 157 l~~~I~~~l~~aE~LGeeG~VdeA~~~~~~~e~lka~ 193 (346)
+...|..+.++..++.++-+.++|..+-.++..|+..
T Consensus 22 ~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 22 LQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4556777777778888888888888777777766544
No 60
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=21.15 E-value=2.9e+02 Score=30.43 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCHHHHHHHHHH
Q psy4154 112 IDAMEHLQAFISDCDRRTELAKQRLLETQEVLS---AEVAEKANAVHQLAEDIGKKLAKAEELGA--EGFVEESLKLMTE 186 (346)
Q Consensus 112 ~e~~~~L~~~I~dcdRkI~~ak~RLe~~~~~~~---~~~~~~~~~i~~l~~~I~~~l~~aE~LGe--eG~VdeA~~~~~~ 186 (346)
.+.+..++.-+..+...+..++..|+....... ........++..+..++.++..+.+.+-+ .--..+-..+-.+
T Consensus 877 e~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~e 956 (1184)
T 1i84_S 877 EAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhccCCCCCchhhhcccccccchhhhcccCcchhhhcccCCccccchHHHHHHHHHHH-HHHHHHHH
Q psy4154 187 IEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQ-AMEHLQAF 265 (346)
Q Consensus 187 ~e~lka~~deL~~~~rn~~~~~~~~~~k~~vCdVCga~L~~~d~~~R~~dH~~gK~H~g~~~lR~~~~El~-~~r~L~~~ 265 (346)
++.++..++++...... +...+.+++ .+..++.-
T Consensus 957 l~~L~~eleele~~l~~---------------------------------------------l~~e~~~le~~l~~l~~e 991 (1184)
T 1i84_S 957 MLDLEEQLEEEEAARQK---------------------------------------------LQLEKVTADGKIKKMEDD 991 (1184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------HHHHHHHHHHHHHHHHHH
Q ss_pred HhhhHHHHHHHHHhhhhhhhhhhHhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhcCC
Q psy4154 266 ISDCDRRTELAKQRLLETQEVLSAEV---AEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSP 337 (346)
Q Consensus 266 i~d~DRrI~~ak~RL~~t~ee~~~~~---~~~~~~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~~e~l~~~ 337 (346)
+.....++....+++........... ....+++..+...+..+..+++.| +..+++......+++.....
T Consensus 992 l~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~el--e~~le~~e~~~~ele~~~~~ 1064 (1184)
T 1i84_S 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL--EVRLKKEEKSRQELEKIKRK 1064 (1184)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
No 61
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=21.14 E-value=2.1e+02 Score=19.64 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy4154 259 MEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEE 314 (346)
Q Consensus 259 ~r~L~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~ekI~~ll~eaE~ 314 (346)
...++..+.++..++..-+.++...... .....+.|..+.+.|.++-.+++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEK----INEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666655665555555543221 223445677777777777666654
No 62
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.91 E-value=25 Score=26.20 Aligned_cols=24 Identities=25% Similarity=0.693 Sum_probs=20.6
Q ss_pred chhhhhhcCCChhhhhhhCccCCCCCCccccHH
Q psy4154 29 KVCKSFLLTCCPHEILSSTRMDLGECPKIHDLA 61 (346)
Q Consensus 29 ~VCk~fL~g~CPhdLF~nTk~dlG~C~k~H~~~ 61 (346)
..|++|.-|.||+. ..|..-|.+.
T Consensus 21 ~LC~~~~~G~C~~G---------~~C~FAHG~~ 44 (69)
T 2d9m_A 21 SICDRYMNGTCPEG---------NSCKFAHGNA 44 (69)
T ss_dssp SBCHHHHHSCCSSC---------SSCSSBSSHH
T ss_pred ccCcccCcCCCCCC---------CccCCcCCHH
Confidence 99999999999974 4799999874
No 63
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.87 E-value=3.4e+02 Score=22.20 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHhhhHHHHHHHHHhhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Q psy4154 263 QAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLA 310 (346)
Q Consensus 263 ~~~i~d~DRrI~~ak~RL~~t~ee~~~~~~~~~~~i~~l~ekI~~ll~ 310 (346)
..-+.-+++||.....+++.... ....+.+.+..+.+.|..+++
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~----~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQG----ALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777776653321 122334444445555554443
No 64
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=20.20 E-value=3.5e+02 Score=21.85 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhhhhhhhhHh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Q psy4154 271 RRTELAKQRLLETQEVLSAE-VAEKANAVHQLAEDIGKKLAKAEELGAEGFVEE 323 (346)
Q Consensus 271 RrI~~ak~RL~~t~ee~~~~-~~~~~~~i~~l~ekI~~ll~eaE~LGeeG~Vde 323 (346)
.|...|.+-.+..|.+.+.. .......+..|+.+|..+-..+-.+...|+...
T Consensus 43 QKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va~~k~~~ 96 (113)
T 4fi5_A 43 QKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIATGKNLG 96 (113)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35556666666667776553 356677788999999999988888887776543
No 65
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.10 E-value=4.2e+02 Score=22.75 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHHHHHHHHHhh
Q psy4154 152 NAVHQLAEDIGKKLAKAEELGAEGFVEES--LKLMTEIEDLRKKKAEAEDTY 201 (346)
Q Consensus 152 ~~i~~l~~~I~~~l~~aE~LGeeG~VdeA--~~~~~~~e~lka~~deL~~~~ 201 (346)
.++..+..+|..+-.+...|-...+.|+| .++..++..++.++....-..
T Consensus 85 ~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 85 TQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777788888777766654 667777777777766554443
Done!