RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4154
(346 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 8e-10
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 33/172 (19%)
Query: 98 DYEKASKNRDYYYDIDAMEH-LQAFISDCD-RRTELAKQRLLETQEVLSAEVAEKANAVH 155
D+E + Y Y D + AF+ + D + + + +L +E+ + +AV
Sbjct: 8 DFE--TGEHQYQYK-DILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVS 62
Query: 156 QLAEDIGKKLAKAEELGAEGFVEESLK-----LMTEIEDLRKKKAEAEDTYRNSMPASSY 210
L+K EE + FVEE L+ LM+ I K E SM Y
Sbjct: 63 GTLRLFWTLLSKQEE-MVQKFVEEVLRINYKFLMSPI------KTEQRQP---SMMTRMY 112
Query: 211 QQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIREKLAELQAMEHL 262
+Q+ R ++++++ A + +L ++K+R+ L EL+ +++
Sbjct: 113 IEQRDR----------LYNDNQVFAKYNVSRLQP-YLKLRQALLELRPAKNV 153
Score = 54.5 bits (130), Expect = 3e-08
Identities = 59/318 (18%), Positives = 104/318 (32%), Gaps = 78/318 (24%)
Query: 22 NVKFFDSKVCKSFLLTCCPHEILSSTR----MD-LGECPKIHDLALRADYEKASKNRDY- 75
NV+ ++K +F L+C +IL +TR D L H + D+ + D
Sbjct: 252 NVQ--NAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTH---ISLDHHSMTLTPDEV 303
Query: 76 ------YYDIDRMDL-GECPKIHDLALR--ADYEKASKNR-DYY--YDIDAMEH-LQAFI 122
Y D DL E + L A+ + D + + D + +++ +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 123 SDCDRRTELAKQRLLETQEVL--SAEVAEK------ANAVHQLAEDIGKKLAKAEELGAE 174
+ + E +++ + V SA + + + + KL K
Sbjct: 364 NVLE-PAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY------ 414
Query: 175 GFVEESLKLMT-EIEDLR---KKKAEAEDTYRNSMPASSYQQQKLRVCEVCSA------- 223
VE+ K T I + K K E E S+ Y K +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 224 --YLGIHDNDRRLADHFGGK----LHLGFI--KIREK----------LAELQAMEHLQAF 265
++G H + + L F+ KIR L LQ ++ + +
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY 533
Query: 266 ISDCDRRTELAKQRLLET 283
I D D + E RL+
Sbjct: 534 ICDNDPKYE----RLVNA 547
Score = 36.8 bits (84), Expect = 0.012
Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 243 HLGFIKIREKLAELQAMEH---------LQAFISDCD-RRTELAKQRLLETQEVLSAEVA 292
H+ F E ++ AF+ + D + + + +L +E+ +
Sbjct: 6 HMDF--------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHII 55
Query: 293 EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLK 326
+AV L+K EE + FVEE L+
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEE-MVQKFVEEVLR 88
Score = 29.8 bits (66), Expect = 1.5
Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 50/141 (35%)
Query: 5 YIF---------ANFSINFPGESNKY-NVKFFDSKVCKSFLLTCCPHEILSSTRMDLGEC 54
Y + + + +F + K+ IL++
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT-------- 523
Query: 55 PKIHDLALRADYEK-ASKNRDYYYDIDRM--DL-------------GECPKIHDLALRAD 98
+ L Y+ N Y +R+ + + + +AL A+
Sbjct: 524 --LQQLKF---YKPYICDNDPKY---ERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 99 YEKASKNRDYYYDIDAMEHLQ 119
E ++ +A + +Q
Sbjct: 576 DE-------AIFE-EAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 5e-04
Identities = 39/221 (17%), Positives = 71/221 (32%), Gaps = 82/221 (37%)
Query: 189 DLRKKKAEAEDTYRNSMPASSYQQQKL--RVCEVCSAYLGIHDNDRRLADHFGGKLHLGF 246
DL K A+D + A ++ + + ++ + +N L HFGG+
Sbjct: 1634 DLYKTSKAAQDVWNR---ADNHFKDTYGFSILDI------VINNPVNLTIHFGGE---KG 1681
Query: 247 IKIREKLAEL-----------------QAMEHLQAFISDCDR----RTELAKQRLLETQE 285
+IRE + + + EH ++ ++ T+ Q L E
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT-QPALTLME 1740
Query: 286 VLSAEVAEK-----ANAV---HQL----A----------EDI-------GKKLAKA---E 313
+ E + A+A H L A E + G + A +
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 314 ELG--------------AEGFVEESLKLMTEQTSSCSPGHV 340
ELG A F +E+L+ + E+ + V
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Score = 38.1 bits (88), Expect = 0.004
Identities = 33/149 (22%), Positives = 55/149 (36%), Gaps = 50/149 (33%)
Query: 102 ASKNRDYYYDI--DAMEHL--------QAF---------ISDCDRRTE------LAKQRL 136
+ + + ++ A+ L +A+ + D E L+ L
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 137 LETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEEL--GAEGFV----EESLK-LMTEIED 189
TQE + V K N+ L K++ + L GA+ V +SL L
Sbjct: 345 --TQEQVQDYV-NKTNS--HLPAG--KQVEIS--LVNGAKNLVVSGPPQSLYGLNLT--- 392
Query: 190 LRKKKAEAE-DTYRNSMPASSYQQQKLRV 217
LRK KA + D R +P S ++KL+
Sbjct: 393 LRKAKAPSGLDQSR--IPFS---ERKLKF 416
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.30
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 28/52 (53%)
Query: 293 EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPGHVPLMS 344
EK + + KKL + SLKL + P ++
Sbjct: 18 EK--------QAL-KKL------------QASLKLY-------ADDSAPALA 41
Score = 29.9 bits (66), Expect = 0.79
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 37/59 (62%)
Query: 149 EKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAEDTYRNSMPA 207
EK + + KKL + SLKL A+D S PA
Sbjct: 18 EK--------QAL-KKL------------QASLKLY------------ADD----SAPA 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.3 bits (71), Expect = 0.55
Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 7/187 (3%)
Query: 132 AKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIEDLR 191
A+ L E + +A K + ++ ++ ++ + EE + E K+ ++ DL
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQ-LQAEKKKMQQQMLDLE 961
Query: 192 KKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFIKIRE 251
++ E E + K++ I + + + L ++ +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIK-----KMEDDILIMEDQNNKLTKERKLLE-ERVSD 1015
Query: 252 KLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAK 311
L E ++ + E L + E +L + +
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 312 AEELGAE 318
EL A+
Sbjct: 1076 IAELQAQ 1082
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 31.1 bits (69), Expect = 0.63
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 113 DAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVA-EKANAVHQLAEDIGKKLAKAEEL 171
+ + L ++ E ++ E + L+ ++ ++ + + + KL + E+L
Sbjct: 501 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 560
Query: 172 GAEGFVEESLKLMTEIEDLRKKKAEAE 198
EGF +ES + EI+DL+ K +
Sbjct: 561 LKEGFQKESRIMKNEIQDLQTKMRRRK 587
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI,
protein structure initiative, northeast structural
genomics consortium; HET: DNA; NMR {Thermus
thermophilus} SCOP: c.15.1.2
Length = 92
Score = 28.0 bits (63), Expect = 1.2
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 159 EDIGKKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAE 198
E+ G KL KA LG EE L + +E KKAE
Sbjct: 52 ENPGSKLEKARALGVPTLTEEELYRL--LEARTGKKAEEL 89
Score = 27.7 bits (62), Expect = 1.5
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 303 EDIGKKLAKAEELGAEGFVEESLKLMTEQ 331
E+ G KL KA LG EE L + E
Sbjct: 52 ENPGSKLEKARALGVPTLTEEELYRLLEA 80
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural
genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Length = 113
Score = 28.3 bits (63), Expect = 1.7
Identities = 7/43 (16%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 159 EDIGKKLAKAEELG----AEGFVEESLKLMTEIEDLRKKKAEA 197
E + KK+ + +E +E F+++ +++L +
Sbjct: 58 EKMNKKMEEVKEANIRVVSEDFLQDVSASTKSLQELFLAHILS 100
Score = 27.2 bits (60), Expect = 3.4
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 303 EDIGKKLAKAEELGAEGFVEESLKLMTEQTSS 334
E + KK+ + +E E+ L+ ++ T S
Sbjct: 58 EKMNKKMEEVKEANIRVVSEDFLQDVSASTKS 89
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 29.1 bits (66), Expect = 2.9
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 17/78 (21%)
Query: 113 DAMEHLQAFISDCDRRT--ELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEE 170
D M L A++ D T +A++ E E E E+A +L ++ +L E
Sbjct: 372 DPM--LLAYLLDPSNTTPEGVARRYGGEWTE----EAGERAALSERLFANLWGRLEGEER 425
Query: 171 LGAEGFVEESLKLMTEIE 188
L L L E+E
Sbjct: 426 L---------LWLYREVE 434
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A
{Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2
PDB: 1v9p_A*
Length = 667
Score = 28.6 bits (65), Expect = 3.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 303 EDIGKKLAKAEELGAEGFVEESLKLMTEQTSSCSPG 338
E+ G KL KA LG EE ++ + P
Sbjct: 632 ENPGSKLEKARALGVAVLTEEEFWRFLKEKGAPVPA 667
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 28.7 bits (65), Expect = 3.6
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 88 PKIHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEV 147
DL L A Y A + + +R + + VL+ +
Sbjct: 105 GVSFDLLL-AAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHL 163
Query: 148 AEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKLMTEIE 188
KA A+ +L +L + E +L+ E+E
Sbjct: 164 VRKAAAIWELERPFLDELRR----------NEQDRLLVELE 194
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel
beta-sheet, DNA replication, clamp loader, RFC1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 112
Score = 27.0 bits (60), Expect = 4.0
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 159 EDIG-KKLAKAEELGAEGFVEESLKLMTEIEDLRKKKAEAE 198
D G K KA LG + E+ L + I + KK++ E
Sbjct: 68 RDSGQSKSDKAAALGTKIIDEDGLLNL--IRTMPGKKSKYE 106
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 27.9 bits (61), Expect = 4.9
Identities = 28/156 (17%), Positives = 58/156 (37%), Gaps = 12/156 (7%)
Query: 69 ASKNRDYYYDIDRMDLGECPKIHDLALRADYEKASKNRDYYYDI--DAMEHLQAFISDCD 126
A + M L I+ L L D + + D + L A ++ +
Sbjct: 55 AEAGKVSIQQQSHMPLQY---IYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIE 111
Query: 127 RRTELAKQRLLETQEVL--SAEVAEKANAV-HQLAEDIGKKLAKAEELGAEGFVEESLKL 183
+ + K++ ++ Q+ + + + +A Q +ED+ + + E A K
Sbjct: 112 KWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQ 171
Query: 184 MTEI----EDLRKKKAEAEDTYRNSMPASSYQQQKL 215
E+ + K EAE Y+ + ++ +QQ L
Sbjct: 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDL 207
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 27.6 bits (62), Expect = 6.0
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 147 VAEKANAVHQLAEDIG-KKLAKAEELGAEGFV 177
+A+ + + D+ + + A+ GA+ +
Sbjct: 190 IAKAVSGATIIGVDVREEAVEAAKRAGADYVI 221
Score = 27.6 bits (62), Expect = 6.0
Identities = 5/32 (15%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 291 VAEKANAVHQLAEDIG-KKLAKAEELGAEGFV 321
+A+ + + D+ + + A+ GA+ +
Sbjct: 190 IAKAVSGATIIGVDVREEAVEAAKRAGADYVI 221
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 27.7 bits (62), Expect = 6.8
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 186 EIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHD---NDRRLADHFGGKL 242
I+ R KA E + C VC G + ++ H G +
Sbjct: 331 PIKQERAPKALEELLSKGETTMKKLDDWTHYTCNVCRNADGKNVVAIGEKYWKIHLGSRR 390
Query: 243 HLGFIKIREKLAELQ 257
H +K + A+ +
Sbjct: 391 HKSNLKRNTRQADFE 405
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.8 bits (62), Expect = 7.1
Identities = 14/127 (11%), Positives = 40/127 (31%), Gaps = 3/127 (2%)
Query: 188 EDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLHLGFI 247
LR + S Q+ +R Y L + +
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMM--AKR 904
Query: 248 KIREKLAELQAMEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQLAEDIGK 307
++++ E +++E + + + ++++ E + + + + N + + +
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET-E 963
Query: 308 KLAKAEE 314
KL E
Sbjct: 964 KLRSDVE 970
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 27.1 bits (61), Expect = 7.7
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 26/135 (19%)
Query: 42 EILSSTRMDLGECPKIHDLALRADY------------EKASKNRDYYYDIDRMDLGECPK 89
++ + + K +LA D+ + + + I +
Sbjct: 85 SVIRKVAIPAQDFRKSMELAREFDFAVALELNEGVFVNRLTPTVEQIAGIVEHPVPPVVD 144
Query: 90 IHDLALRADYEKASKNRDYYYDIDAMEHLQAFISDCD--RRTELAKQRLLETQEVLSAEV 147
I ++ R + + +Y+D +A + + +S R L +V A
Sbjct: 145 IEEMFERKECCQLC----FYFDEEAEQKVMPLLSGLSATRWHPLF-------ADVNVAGT 193
Query: 148 AEKANAVHQLAEDIG 162
KA + A+
Sbjct: 194 -SKATGLSLFADYYR 207
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 27.0 bits (59), Expect = 7.8
Identities = 26/209 (12%), Positives = 65/209 (31%), Gaps = 12/209 (5%)
Query: 127 RRTELAKQ---RLLETQEVLSAEVAEKANAVHQLAEDIGKKLAKAEELGAEGFVEESLKL 183
+ L KQ +LL+ + +++ ++ + + ++ L K E + ++
Sbjct: 34 EGSALGKQLNLKLLDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQ-------EM 86
Query: 184 MTEIEDLRKKKAEAEDTYRNSMPASSYQQQKLRVCEVCSAYLGIHDNDRRLADHFGGKLH 243
++E+++ K D ++ ++ G L +
Sbjct: 87 SKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGE 146
Query: 244 LGFIKIREKLAELQA--MEHLQAFISDCDRRTELAKQRLLETQEVLSAEVAEKANAVHQL 301
+ R + L+ + R E K+ A+ E + + +
Sbjct: 147 EMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEK 206
Query: 302 AEDIGKKLAKAEELGAEGFVEESLKLMTE 330
A+ + L + E F L + E
Sbjct: 207 AKPALEDLRQGLLPVLESFKVSFLSALEE 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.376
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,308,716
Number of extensions: 323373
Number of successful extensions: 896
Number of sequences better than 10.0: 1
Number of HSP's gapped: 891
Number of HSP's successfully gapped: 61
Length of query: 346
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 252
Effective length of database: 4,077,219
Effective search space: 1027459188
Effective search space used: 1027459188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)